FFCP PHASE1:Mm9::chr18:31476933..31476961,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=19762|HGNC=|MCL_coexpression_id=20|UniProt=F8WGU6|association_with_transcript=0bp_to_ENSMUST00000082070_5end|description=CAGE_peak_3_at_Rit2_5end|id=chr18:31476933..31476961,-|ontology_enrichment_celltype=CL:0000117!2.88e-12!23;CL:0000337!2.88e-12!23;CL:0000540!6.00e-08!33;CL:0000047!6.00e-08!33;CL:0000031!6.00e-08!33;CL:0000404!6.00e-08!33|ontology_enrichment_celltype_v019_2=CL:0000117,4.21e-12,23;CL:0000337,4.21e-12,23;CL:0002610,1.89e-09,3;CL:0002614,2.93e-09,3;CL:0000540,9.34e-08,33;CL:0000047,9.34e-08,33;CL:0000031,9.34e-08,33;CL:0000404,9.34e-08,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.56e-24!75;UBERON:0001016!1.56e-24!75;UBERON:0000033!3.07e-24!63;UBERON:0001049!2.02e-23!52;UBERON:0005068!2.02e-23!52;UBERON:0006241!2.02e-23!52;UBERON:0007135!2.02e-23!52;UBERON:0001017!2.72e-23!73;UBERON:0005743!2.72e-23!73;UBERON:0000955!2.89e-23!50;UBERON:0006238!2.89e-23!50;UBERON:0002616!2.61e-22!49;UBERON:0004121!2.21e-21!102;UBERON:0000924!2.21e-21!102;UBERON:0006601!2.21e-21!102;UBERON:0002346!3.39e-21!71;UBERON:0003075!3.39e-21!71;UBERON:0007284!3.39e-21!71;UBERON:0002020!4.83e-19!34;UBERON:0003056!4.58e-17!49;UBERON:0003080!3.19e-16!40;UBERON:0002791!8.41e-16!29;UBERON:0003528!8.41e-16!29;UBERON:0001893!8.41e-16!29;UBERON:0002780!3.44e-15!39;UBERON:0001890!3.44e-15!39;UBERON:0006240!3.44e-15!39;UBERON:0007811!3.78e-14!86;UBERON:0000153!7.41e-12!94;UBERON:0002021!8.22e-12!10;UBERON:0000411!8.22e-12!10;UBERON:0001950!8.22e-12!10;UBERON:0002619!1.08e-09!17;UBERON:0002420!1.36e-09!8;UBERON:0007245!1.36e-09!8;UBERON:0010009!1.36e-09!8;UBERON:0010011!1.36e-09!8;UBERON:0000454!1.36e-09!8;UBERON:0002298!6.70e-09!6;UBERON:0000956!1.71e-08!21;UBERON:0001869!1.71e-08!21;UBERON:0000203!1.71e-08!21;UBERON:0003076!6.07e-08!12;UBERON:0003057!6.07e-08!12|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.34e-41,54;UBERON:0001049,1.08e-36,52;UBERON:0005068,1.08e-36,52;UBERON:0006241,1.08e-36,52;UBERON:0007135,1.08e-36,52;UBERON:0001017,1.92e-33,73;UBERON:0001016,2.21e-32,75;UBERON:0000955,2.14e-29,47;UBERON:0006238,2.14e-29,47;UBERON:0002346,1.11e-28,64;UBERON:0003075,1.11e-28,64;UBERON:0007284,1.11e-28,64;UBERON:0002616,1.16e-27,46;UBERON:0002020,7.36e-26,34;UBERON:0010371,2.14e-24,73;UBERON:0004121,3.20e-24,95;UBERON:0000924,3.20e-24,95;UBERON:0006601,3.20e-24,95;UBERON:0003080,1.31e-21,40;UBERON:0002780,9.53e-20,39;UBERON:0001890,9.53e-20,39;UBERON:0006240,9.53e-20,39;UBERON:0003528,2.99e-19,29;UBERON:0002791,2.99e-19,29;UBERON:0001893,2.99e-19,29;UBERON:0002021,4.77e-19,10;UBERON:0000411,4.77e-19,10;UBERON:0001950,4.77e-19,10;UBERON:0010314,4.26e-18,92;UBERON:0003056,8.32e-17,49;UBERON:0003076,1.91e-16,12;UBERON:0003057,1.91e-16,12;UBERON:0000025,2.03e-13,114;UBERON:0002619,4.93e-13,17;UBERON:0000956,2.38e-12,21;UBERON:0001869,2.38e-12,21;UBERON:0000203,2.38e-12,21;UBERON:0004111,3.92e-12,122;UBERON:0002950,8.39e-12,4;UBERON:0001891,8.39e-12,4;UBERON:0009616,8.39e-12,4;UBERON:0010286,8.39e-12,4;UBERON:0002240,8.21e-11,6;UBERON:0005174,8.21e-11,6;UBERON:0001137,8.21e-11,6;UBERON:0004684,1.89e-09,3;UBERON:0002275,1.89e-09,3;UBERON:0002038,2.93e-09,3;UBERON:0009663,2.93e-09,3;UBERON:0009661,2.93e-09,3;UBERON:0000125,2.93e-09,3;UBERON:0002308,2.93e-09,3;UBERON:0011216,1.71e-08,194;UBERON:0001948,2.38e-08,5;UBERON:0002315,2.38e-08,5;UBERON:0002420,2.56e-08,8;UBERON:0007245,2.56e-08,8;UBERON:0010009,2.56e-08,8;UBERON:0010011,2.56e-08,8;UBERON:0000454,2.56e-08,8;UBERON:0004733,2.43e-07,6;UBERON:0004732,2.43e-07,6;UBERON:0002028,2.43e-07,6;UBERON:0007277,2.43e-07,6;UBERON:0001896,7.15e-07,2;UBERON:0002298,7.15e-07,2;UBERON:0005290,7.15e-07,2;UBERON:0010096,7.15e-07,2|phase1_expression=0.480446541314382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.72138528483423,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.809265843438391,0.528990979272033,0.633831403506179,0,0,0,0,0,0,0,0,0,0,4.28476476605705,5.30084498283872,0,0.191690942036473,0,6.60695285996332,19.1531007127782,22.4265538554115,0.791317726381163,1.09785172322892,0.52091337055676,22.0554569211091,6.19038871034848,11.4598685832608,2.65165726926301,3.55929201997757,0,0.075726193333184,0.226714680320357,0,0,0,0,0,0,0.842666520790511,0,0,0,0.14084341977668,0,0,0,0,0,0,0.11418387971906,0,0.445326417194474,0,0,0,0,0.117588707135705,0,0,0,0,0,0,0,0,3.80615036115011,1.46612694769419,0,0,0,0,10.9347166765521,7.32000964509802,0.628271760564322,2.60736480288415,3.06858548796397,9.55825004973976,7.78758062725237,0,0,0,0.631325567659422,0,0,0,0.150704817835715,0.0680364991513279,0,0.374806898238915,0.258703370739016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164167464079095,0,0,0,0,2.94405927989778,0.205809224758569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199141273254367,0,0,0,0,0,0,0.0632365371242573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159454768657487,0,0,0,0,0,0,0,11.7201930691088,13.5965556446956,0,0,0,0,0,0,0,0,0,0,0,1.92792789853084,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|EntrezGene=19762 | |||
|HGNC= | |||
|MCL_coexpression_id=20 | |||
|UniProt=F8WGU6 | |||
|association_with_transcript=0bp_to_ENSMUST00000082070_5end | |||
|description=CAGE_peak_3_at_Rit2_5end | |||
|id=chr18:31476933..31476961,- | |||
|ontology_enrichment_celltype=CL:0000117!2.88e-12!23;CL:0000337!2.88e-12!23;CL:0000540!6.00e-08!33;CL:0000047!6.00e-08!33;CL:0000031!6.00e-08!33;CL:0000404!6.00e-08!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.21e-12,23;CL:0000337,4.21e-12,23;CL:0002610,1.89e-09,3;CL:0002614,2.93e-09,3;CL:0000540,9.34e-08,33;CL:0000047,9.34e-08,33;CL:0000031,9.34e-08,33;CL:0000404,9.34e-08,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.56e-24!75;UBERON:0001016!1.56e-24!75;UBERON:0000033!3.07e-24!63;UBERON:0001049!2.02e-23!52;UBERON:0005068!2.02e-23!52;UBERON:0006241!2.02e-23!52;UBERON:0007135!2.02e-23!52;UBERON:0001017!2.72e-23!73;UBERON:0005743!2.72e-23!73;UBERON:0000955!2.89e-23!50;UBERON:0006238!2.89e-23!50;UBERON:0002616!2.61e-22!49;UBERON:0004121!2.21e-21!102;UBERON:0000924!2.21e-21!102;UBERON:0006601!2.21e-21!102;UBERON:0002346!3.39e-21!71;UBERON:0003075!3.39e-21!71;UBERON:0007284!3.39e-21!71;UBERON:0002020!4.83e-19!34;UBERON:0003056!4.58e-17!49;UBERON:0003080!3.19e-16!40;UBERON:0002791!8.41e-16!29;UBERON:0003528!8.41e-16!29;UBERON:0001893!8.41e-16!29;UBERON:0002780!3.44e-15!39;UBERON:0001890!3.44e-15!39;UBERON:0006240!3.44e-15!39;UBERON:0007811!3.78e-14!86;UBERON:0000153!7.41e-12!94;UBERON:0002021!8.22e-12!10;UBERON:0000411!8.22e-12!10;UBERON:0001950!8.22e-12!10;UBERON:0002619!1.08e-09!17;UBERON:0002420!1.36e-09!8;UBERON:0007245!1.36e-09!8;UBERON:0010009!1.36e-09!8;UBERON:0010011!1.36e-09!8;UBERON:0000454!1.36e-09!8;UBERON:0002298!6.70e-09!6;UBERON:0000956!1.71e-08!21;UBERON:0001869!1.71e-08!21;UBERON:0000203!1.71e-08!21;UBERON:0003076!6.07e-08!12;UBERON:0003057!6.07e-08!12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,3.34e-41,54;UBERON:0001049,1.08e-36,52;UBERON:0005068,1.08e-36,52;UBERON:0006241,1.08e-36,52;UBERON:0007135,1.08e-36,52;UBERON:0001017,1.92e-33,73;UBERON:0001016,2.21e-32,75;UBERON:0000955,2.14e-29,47;UBERON:0006238,2.14e-29,47;UBERON:0002346,1.11e-28,64;UBERON:0003075,1.11e-28,64;UBERON:0007284,1.11e-28,64;UBERON:0002616,1.16e-27,46;UBERON:0002020,7.36e-26,34;UBERON:0010371,2.14e-24,73;UBERON:0004121,3.20e-24,95;UBERON:0000924,3.20e-24,95;UBERON:0006601,3.20e-24,95;UBERON:0003080,1.31e-21,40;UBERON:0002780,9.53e-20,39;UBERON:0001890,9.53e-20,39;UBERON:0006240,9.53e-20,39;UBERON:0003528,2.99e-19,29;UBERON:0002791,2.99e-19,29;UBERON:0001893,2.99e-19,29;UBERON:0002021,4.77e-19,10;UBERON:0000411,4.77e-19,10;UBERON:0001950,4.77e-19,10;UBERON:0010314,4.26e-18,92;UBERON:0003056,8.32e-17,49;UBERON:0003076,1.91e-16,12;UBERON:0003057,1.91e-16,12;UBERON:0000025,2.03e-13,114;UBERON:0002619,4.93e-13,17;UBERON:0000956,2.38e-12,21;UBERON:0001869,2.38e-12,21;UBERON:0000203,2.38e-12,21;UBERON:0004111,3.92e-12,122;UBERON:0002950,8.39e-12,4;UBERON:0001891,8.39e-12,4;UBERON:0009616,8.39e-12,4;UBERON:0010286,8.39e-12,4;UBERON:0002240,8.21e-11,6;UBERON:0005174,8.21e-11,6;UBERON:0001137,8.21e-11,6;UBERON:0004684,1.89e-09,3;UBERON:0002275,1.89e-09,3;UBERON:0002038,2.93e-09,3;UBERON:0009663,2.93e-09,3;UBERON:0009661,2.93e-09,3;UBERON:0000125,2.93e-09,3;UBERON:0002308,2.93e-09,3;UBERON:0011216,1.71e-08,194;UBERON:0001948,2.38e-08,5;UBERON:0002315,2.38e-08,5;UBERON:0002420,2.56e-08,8;UBERON:0007245,2.56e-08,8;UBERON:0010009,2.56e-08,8;UBERON:0010011,2.56e-08,8;UBERON:0000454,2.56e-08,8;UBERON:0004733,2.43e-07,6;UBERON:0004732,2.43e-07,6;UBERON:0002028,2.43e-07,6;UBERON:0007277,2.43e-07,6;UBERON:0001896,7.15e-07,2;UBERON:0002298,7.15e-07,2;UBERON:0005290,7.15e-07,2;UBERON:0010096,7.15e-07,2 | |||
|phase1_expression=0.480446541314382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.72138528483423,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.809265843438391,0.528990979272033,0.633831403506179,0,0,0,0,0,0,0,0,0,0,4.28476476605705,5.30084498283872,0,0.191690942036473,0,6.60695285996332,19.1531007127782,22.4265538554115,0.791317726381163,1.09785172322892,0.52091337055676,22.0554569211091,6.19038871034848,11.4598685832608,2.65165726926301,3.55929201997757,0,0.075726193333184,0.226714680320357,0,0,0,0,0,0,0.842666520790511,0,0,0,0.14084341977668,0,0,0,0,0,0,0.11418387971906,0,0.445326417194474,0,0,0,0,0.117588707135705,0,0,0,0,0,0,0,0,3.80615036115011,1.46612694769419,0,0,0,0,10.9347166765521,7.32000964509802,0.628271760564322,2.60736480288415,3.06858548796397,9.55825004973976,7.78758062725237,0,0,0,0.631325567659422,0,0,0,0.150704817835715,0.0680364991513279,0,0.374806898238915,0.258703370739016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164167464079095,0,0,0,0,2.94405927989778,0.205809224758569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199141273254367,0,0,0,0,0,0,0.0632365371242573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.159454768657487,0,0,0,0,0,0,0,11.7201930691088,13.5965556446956,0,0,0,0,0,0,0,0,0,0,0,1.92792789853084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.36175842301515,0,0,0,0,0,0.164549020602121,0,0,0,0,0,0,0,0,0,0,12.6089205367147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12950368523413,1.38097570952153,2.29158205375759,0.859265911718438,4.7955776383945,7.55393897389701,4.05013500139084,3.15224842256954,5.43770890781046,6.21312374102184,0,0,0,0,0,0,0.222246727801615,0.206035057238894,0.64183841918363,0,0.25347929989024,0.188626341386076,0.561849044819294,0.192075457214608,0.114870937911227,0,0.115884325944855,0,0,0.147198920134397,0,0,0.476872379894642,0.145346416632329,0.376437521661322,0.169229215783353,0.548783918618318,0,0.135804113845862,0,0,0.29551344712669,0.409231043169689,0.309873682371932,0.192906610981141,0.249810577937946,0.233931608445408,0,0.382576664137687,0,0.231867835620421 | |||
|short_description=p3@Rit2 | |||
}} |
Revision as of 15:52, 13 September 2013
Short description: | p3@Rit2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Rit2_5end |
Coexpression cluster: | MCL_coexpression_mm9:20 |
Association with transcript: | 0bp_to_ENSMUST00000082070_5end |
EntrezGene: | Rit2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.21e-12 | 23 |
neuroblast (sensu Vertebrata) | 4.21e-12 | 23 |
raphe nuclei neuron | 1.89e-09 | 3 |
neuron of the substantia nigra | 2.93e-09 | 3 |
neuron | 9.34e-08 | 33 |
neuronal stem cell | 9.34e-08 | 33 |
neuroblast | 9.34e-08 | 33 |
electrically signaling cell | 9.34e-08 | 33 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.