FFCP PHASE1:Hg19::chr8:68864487..68864512,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=80243|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=22950|TSSclassifier=S|UniProt=Q70Z35|association_with_transcript=-90bp_to_ENST00000529398,NM_024870,NM_025170,uc003xxu.1,uc003xxv.1,uc011lez.1_5end|coexpression_cluster_id=C1544|description=CAGE_peak_4_at_PREX2_5end|id=chr8:68864487..68864512,+|ontology_enrichment_celltype=CL:0002139!3.81e-18!24;CL:0000115!6.10e-14!35;CL:0000071!5.36e-13!18;CL:0002546!5.36e-13!18;CL:0002078!1.92e-09!44;CL:0000047!1.97e-08!8;CL:0005020!8.64e-07!6;CL:0002138!8.64e-07!6;CL:0005022!8.64e-07!6|ontology_enrichment_celltype_v019=CL:0002139;2.08e-10;24|ontology_enrichment_celltype_v019_2=CL:0002139,1.64e-10,24;CL:0000115,1.83e-08,36;CL:0000047,3.02e-08,8|ontology_enrichment_development_v019=UBERON:0006601;1.20e-12;82!UBERON:0006215;1.89e-07;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!5.37e-59!115;UBERON:0001017!1.90e-50!82;UBERON:0005743!1.85e-48!86;UBERON:0001049!2.17e-46!57;UBERON:0005068!2.17e-46!57;UBERON:0006241!2.17e-46!57;UBERON:0007135!2.17e-46!57;UBERON:0000073!4.96e-43!94;UBERON:0001016!4.96e-43!94;UBERON:0000955!1.74e-38!69;UBERON:0006238!1.74e-38!69;UBERON:0002616!3.41e-38!59;UBERON:0002780!4.89e-37!41;UBERON:0001890!4.89e-37!41;UBERON:0006240!4.89e-37!41;UBERON:0003080!8.47e-36!42;UBERON:0003075!3.57e-33!86;UBERON:0007284!3.57e-33!86;UBERON:0001893!4.55e-31!34;UBERON:0002346!9.87e-31!90;UBERON:0002020!1.11e-30!34;UBERON:0003528!1.11e-30!34;UBERON:0002791!6.16e-30!33;UBERON:0001869!2.46e-29!32;UBERON:0004111!4.87e-23!241;UBERON:0004121!4.87e-23!169;UBERON:0003056!2.57e-22!61;UBERON:0000924!6.71e-22!173;UBERON:0006601!6.71e-22!173;UBERON:0000956!8.83e-22!25;UBERON:0000203!8.83e-22!25;UBERON:0002619!2.39e-21!22;UBERON:0000025!4.44e-21!194;UBERON:0000153!1.00e-20!129;UBERON:0007811!1.00e-20!129;UBERON:0000033!3.82e-20!123;UBERON:0001950!3.41e-19!20;UBERON:0000477!8.16e-18!286;UBERON:0001986!5.36e-13!18;UBERON:0004638!5.36e-13!18;UBERON:0004852!5.36e-13!18;UBERON:0003076!1.88e-11!15;UBERON:0003057!1.88e-11!15;UBERON:0000483!8.98e-11!309;UBERON:0002420!1.35e-10!9;UBERON:0007245!1.35e-10!9;UBERON:0010009!1.35e-10!9;UBERON:0010011!1.35e-10!9;UBERON:0000454!1.35e-10!9;UBERON:0000119!2.07e-10!312;UBERON:0002308!2.30e-10!9;UBERON:0000125!2.30e-10!9;UBERON:0000487!1.08e-09!22;UBERON:0004732!1.30e-09!13;UBERON:0000468!3.70e-09!659;UBERON:0004733!8.19e-09!12;UBERON:0002028!8.19e-09!12;UBERON:0007277!8.19e-09!12;UBERON:0009663!1.40e-08!7;UBERON:0001871!2.31e-08!7;UBERON:0000922!2.32e-08!612;UBERON:0000467!4.56e-08!625;UBERON:0000480!5.50e-08!626;UBERON:0000064!5.69e-08!219;UBERON:0006914!5.99e-08!25;UBERON:0001894!2.65e-07!7;UBERON:0006222!2.65e-07!7;UBERON:0000200!2.73e-07!6;UBERON:0000349!6.48e-07!5;UBERON:0002298!9.93e-07!8|ontology_enrichment_uberon_v019=UBERON:0001869;1.67e-39;32!UBERON:0001893;2.30e-37;34!UBERON:0002791;8.72e-37;32!UBERON:0003528;4.98e-35;34!UBERON:0002020;4.98e-35;34!UBERON:0002780;1.62e-34;41!UBERON:0001890;1.62e-34;41!UBERON:0000073;3.67e-31;53!UBERON:0002616;3.67e-31;53!UBERON:0000956;4.10e-30;25!UBERON:0000203;4.10e-30;25!UBERON:0002619;7.57e-29;22!UBERON:0001950;2.86e-25;20!UBERON:0001017;8.04e-22;75!UBERON:0000955;1.41e-21;68!UBERON:0001016;1.20e-18;83!UBERON:0002420;1.02e-13;9!UBERON:0007245;1.02e-13;9!UBERON:0010009;1.02e-13;9!UBERON:0010011;1.02e-13;9!UBERON:0000454;1.02e-13;9!UBERON:0007023;1.28e-13;114!UBERON:0004732;3.80e-11;13!UBERON:0000125;7.68e-11;9!UBERON:0002308;7.68e-11;9!UBERON:0009663;1.53e-10;7!UBERON:0000349;1.94e-10;5!UBERON:0004733;6.83e-10;12!UBERON:0002028;6.83e-10;12!UBERON:0002021;2.56e-09;5!UBERON:0000369;3.93e-09;4!UBERON:0002435;3.93e-09;4!UBERON:0000204;3.93e-09;4!UBERON:0000200;2.68e-08;6!UBERON:0002298;3.31e-08;6!UBERON:0005383;3.04e-07;3!UBERON:0005382;3.04e-07;3!UBERON:0011216;3.15e-07;132!UBERON:0001870;9.86e-07;3|ontology_enrichment_uberon_v019_2=UBERON:0001049,6.31e-59,56;UBERON:0005068,6.31e-59,56;UBERON:0006241,6.31e-59,56;UBERON:0007135,6.31e-59,56;UBERON:0001017,1.78e-58,81;UBERON:0000073,9.75e-57,53;UBERON:0002616,9.75e-57,53;UBERON:0001016,3.94e-53,89;UBERON:0002780,5.36e-48,41;UBERON:0001890,5.36e-48,41;UBERON:0003080,5.36e-48,41;UBERON:0006240,5.36e-48,41;UBERON:0000955,5.39e-48,68;UBERON:0006238,5.39e-48,68;UBERON:0001893,3.38e-43,34;UBERON:0001869,6.18e-43,32;UBERON:0003075,7.07e-42,82;UBERON:0007284,7.07e-42,82;UBERON:0003528,5.90e-40,34;UBERON:0002020,5.90e-40,34;UBERON:0002791,1.45e-39,32;UBERON:0002346,2.90e-39,86;UBERON:0007023,3.16e-37,114;UBERON:0010371,1.23e-31,104;UBERON:0003056,9.37e-31,61;UBERON:0000956,1.44e-30,25;UBERON:0000203,1.44e-30,25;UBERON:0002619,2.76e-29,22;UBERON:0010314,9.91e-27,132;UBERON:0001950,8.77e-26,20;UBERON:0004121,1.18e-25,171;UBERON:0000924,1.18e-25,171;UBERON:0006601,1.18e-25,171;UBERON:0000025,4.46e-23,192;UBERON:0004111,4.50e-21,240;UBERON:0011216,3.92e-20,223;UBERON:0002420,1.05e-13,9;UBERON:0007245,1.05e-1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0,0.22589216407792,0,0,0.308696632431779,0.874238242015829,0,1.22574160876953,0,3.53355240806901,2.0793248022896,0.8453114551668,0,0.0939839179798536,0.193373663920732,0,0,0,0,1.46067277649303,0.458729283404541,0.716697915757256,0,1.69978725477287,1.30905207102113,2.645134202577,0,0,0,0.883164973845552,0.655593431782173,0,0,0.534434810531121,0.18378979906969,0,0.227336094654718,0.267964130156178,2.48750831837634,1.75836092965222,0.639701945702943,2.14257988317366,0,0.248298857183432,0,0.445530107947154,2.42540626749863,0.870866991587845,1.71116650542641,0.0673520530145875,0.286888821570705,2.32862249582209,0,0,0,0,0,0.977931553462932,1.22068853494722,0.665756774185513,1.40891655513718,0|short_description=p4@PREX2}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=80243 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=22950 | |||
|TSSclassifier=S | |||
|UniProt=Q70Z35 | |||
|association_with_transcript=-90bp_to_ENST00000529398,NM_024870,NM_025170,uc003xxu.1,uc003xxv.1,uc011lez.1_5end | |||
|coexpression_cluster_id=C1544 | |||
|description=CAGE_peak_4_at_PREX2_5end | |||
|id=chr8:68864487..68864512,+ | |||
|ontology_enrichment_celltype=CL:0002139!3.81e-18!24;CL:0000115!6.10e-14!35;CL:0000071!5.36e-13!18;CL:0002546!5.36e-13!18;CL:0002078!1.92e-09!44;CL:0000047!1.97e-08!8;CL:0005020!8.64e-07!6;CL:0002138!8.64e-07!6;CL:0005022!8.64e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0002139;2.08e-10;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,1.64e-10,24;CL:0000115,1.83e-08,36;CL:0000047,3.02e-08,8 | |||
|ontology_enrichment_development_v019=UBERON:0006601;1.20e-12;82!UBERON:0006215;1.89e-07;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0001869;1.67e-39;32!UBERON:0001893;2.30e-37;34!UBERON:0002791;8.72e-37;32!UBERON:0003528;4.98e-35;34!UBERON:0002020;4.98e-35;34!UBERON:0002780;1.62e-34;41!UBERON:0001890;1.62e-34;41!UBERON:0000073;3.67e-31;53!UBERON:0002616;3.67e-31;53!UBERON:0000956;4.10e-30;25!UBERON:0000203;4.10e-30;25!UBERON:0002619;7.57e-29;22!UBERON:0001950;2.86e-25;20!UBERON:0001017;8.04e-22;75!UBERON:0000955;1.41e-21;68!UBERON:0001016;1.20e-18;83!UBERON:0002420;1.02e-13;9!UBERON:0007245;1.02e-13;9!UBERON:0010009;1.02e-13;9!UBERON:0010011;1.02e-13;9!UBERON:0000454;1.02e-13;9!UBERON:0007023;1.28e-13;114!UBERON:0004732;3.80e-11;13!UBERON:0000125;7.68e-11;9!UBERON:0002308;7.68e-11;9!UBERON:0009663;1.53e-10;7!UBERON:0000349;1.94e-10;5!UBERON:0004733;6.83e-10;12!UBERON:0002028;6.83e-10;12!UBERON:0002021;2.56e-09;5!UBERON:0000369;3.93e-09;4!UBERON:0002435;3.93e-09;4!UBERON:0000204;3.93e-09;4!UBERON:0000200;2.68e-08;6!UBERON:0002298;3.31e-08;6!UBERON:0005383;3.04e-07;3!UBERON:0005382;3.04e-07;3!UBERON:0011216;3.15e-07;132!UBERON:0001870;9.86e-07;3 | |||
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|short_description=p4@PREX2 | |||
}} |
Revision as of 05:55, 14 September 2013
Short description: | p4@PREX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_PREX2_5end |
Coexpression cluster: | C1544_caudate_globus_optic_locus_spinal_hippocampus_thalamus |
Association with transcript: | -90bp_to_ENST00000529398, NM_024870, NM_025170, uc003xxu.1, uc003xxv.1, uc011lez.1_5end |
EntrezGene: | PREX2 |
HGNC: | 22950 |
UniProt: | Q70Z35 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 1.64e-10 | 24 |
endothelial cell | 1.83e-08 | 36 |
neuronal stem cell | 3.02e-08 | 8 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.