FFCP PHASE1:Mm9::chr2:22478133..22478157,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|EntrezGene=14417|HGNC=|MCL_coexpression_id=251|UniProt=P48320,Q548L4,Q3URJ3|association_with_transcript=286bp_to_NM_008078,uc008ini.1,uc008inj.1,uc008ink.1_5end|description=CAGE_peak_3_at_Gad2_5end|id=chr2:22478133..22478157,+|ontology_enrichment_celltype=CL:0000117!6.22e-17!23;CL:0000337!6.22e-17!23;CL:0000540!4.87e-09!33;CL:0000047!4.87e-09!33;CL:0000031!4.87e-09!33;CL:0000404!4.87e-09!33;CL:0002319!2.33e-07!43;CL:0000221!5.36e-07!44;CL:0000133!5.36e-07!44|ontology_enrichment_celltype_v019_2=CL:0000117,2.64e-24,23;CL:0000337,2.64e-24,23;CL:0000540,6.06e-15,33;CL:0000047,6.06e-15,33;CL:0000031,6.06e-15,33;CL:0000404,6.06e-15,33;CL:0000393,1.11e-11,39;CL:0000211,1.11e-11,39;CL:0002319,4.97e-10,43;CL:0000221,1.15e-09,44;CL:0000133,1.15e-09,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!1.77e-30!63;UBERON:0002346!2.64e-30!71;UBERON:0003075!2.64e-30!71;UBERON:0007284!2.64e-30!71;UBERON:0001049!4.80e-29!52;UBERON:0005068!4.80e-29!52;UBERON:0006241!4.80e-29!52;UBERON:0007135!4.80e-29!52;UBERON:0000955!1.36e-28!50;UBERON:0006238!1.36e-28!50;UBERON:0002616!1.45e-27!49;UBERON:0003056!3.82e-27!49;UBERON:0000073!6.96e-26!75;UBERON:0001016!6.96e-26!75;UBERON:0001017!2.51e-25!73;UBERON:0005743!2.51e-25!73;UBERON:0004121!2.27e-24!102;UBERON:0000924!2.27e-24!102;UBERON:0006601!2.27e-24!102;UBERON:0002020!4.43e-22!34;UBERON:0003080!5.88e-22!40;UBERON:0002780!5.17e-21!39;UBERON:0001890!5.17e-21!39;UBERON:0006240!5.17e-21!39;UBERON:0002791!1.13e-18!29;UBERON:0003528!1.13e-18!29;UBERON:0001893!1.13e-18!29;UBERON:0007811!3.72e-17!86;UBERON:0000153!5.78e-14!94;UBERON:0000956!1.94e-12!21;UBERON:0001869!1.94e-12!21;UBERON:0000203!1.94e-12!21;UBERON:0002619!2.07e-10!17;UBERON:0002021!5.65e-09!10;UBERON:0000411!5.65e-09!10;UBERON:0001950!5.65e-09!10;UBERON:0002420!1.47e-07!8;UBERON:0007245!1.47e-07!8;UBERON:0010009!1.47e-07!8;UBERON:0010011!1.47e-07!8;UBERON:0000454!1.47e-07!8;UBERON:0003076!1.71e-07!12;UBERON:0003057!1.71e-07!12;UBERON:0002298!9.57e-07!6|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.72e-39,54;UBERON:0002346,4.78e-39,64;UBERON:0003075,4.78e-39,64;UBERON:0007284,4.78e-39,64;UBERON:0001049,5.50e-36,52;UBERON:0005068,5.50e-36,52;UBERON:0006241,5.50e-36,52;UBERON:0007135,5.50e-36,52;UBERON:0001017,3.48e-34,73;UBERON:0002020,2.01e-33,34;UBERON:0001016,6.60e-33,75;UBERON:0004121,1.19e-32,95;UBERON:0000924,1.19e-32,95;UBERON:0006601,1.19e-32,95;UBERON:0010371,1.47e-32,73;UBERON:0003056,3.72e-31,49;UBERON:0000955,8.35e-31,47;UBERON:0006238,8.35e-31,47;UBERON:0002616,2.50e-29,46;UBERON:0003528,5.68e-28,29;UBERON:0002791,5.68e-28,29;UBERON:0001893,5.68e-28,29;UBERON:0003080,6.24e-26,40;UBERON:0002780,1.54e-24,39;UBERON:0001890,1.54e-24,39;UBERON:0006240,1.54e-24,39;UBERON:0010314,4.66e-23,92;UBERON:0000956,4.75e-18,21;UBERON:0001869,4.75e-18,21;UBERON:0000203,4.75e-18,21;UBERON:0002619,1.85e-16,17;UBERON:0002021,2.06e-13,10;UBERON:0000411,2.06e-13,10;UBERON:0001950,2.06e-13,10;UBERON:0002420,3.73e-11,8;UBERON:0007245,3.73e-11,8;UBERON:0010009,3.73e-11,8;UBERON:0010011,3.73e-11,8;UBERON:0000454,3.73e-11,8;UBERON:0003076,3.75e-10,12;UBERON:0003057,3.75e-10,12;UBERON:0000025,4.13e-10,114;UBERON:0004111,1.55e-09,122;UBERON:0002240,1.45e-07,6;UBERON:0005174,1.45e-07,6;UBERON:0001137,1.45e-07,6;UBERON:0002950,3.82e-07,4;UBERON:0001891,3.82e-07,4;UBERON:0009616,3.82e-07,4;UBERON:0010286,3.82e-07,4;UBERON:0000369,4.57e-07,5;UBERON:0002435,4.57e-07,5;UBERON:0000204,4.57e-07,5;UBERON:0010082,4.57e-07,5|phase1_expression=0,0,0,0,0,0,0,0.129123323441576,0.140788722151667,0,0,0,0,0,0,0,0,0,0,0,5.27268398936633,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288851619751275,0.166234645358492,0,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0,0,0,0,0,0,0,0,0,0,4.04632921719196,5.28990979272033,5.70448263155561,0,0,0,0,0,0.898800331555214,0,1.03689612308478,1.08004750665353,0.630974884054146,5.14171771926846,6.18431914664518,13.1065155160001,11.3097655801519,15.6267193723704,38.540558349786,30.2618991261895,41.3201574459295,6.06676923558892,3.11057988248193,4.68822033501084,27.3599339021353,15.757353080887,22.1557459276375,9.42811473515737,7.40332740155335,3.54158947068071,0.075726193333184,0.604572480854284,0,0,0,0,0,0,0.842666520790511,0.170430322578058,0,0,0,0,0,0,0,0,0,0.79928715803342,0,0,0.173485326766136,0.304465478312141,0.230615497256059,0.150722640552623,0,0,0,0,0,0,0,0,0,14.3462590535658,14.0329293565015,0,0,0,0,40.2936819998973,69.9975922312499,15.0785222535437,20.5112697826886,18.1557974704535,51.3236470062113,47.3744488157852,0,0,0,0.631325567659422,0.260240885925407,1.60931473103431,3.42118046630164,2.86339153887859,7.55205140579739,6.53379973452734,4.31027932974753,2.06962696591213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.462801338662135,0,0,0.116765342367169,0,0,0,0,0.219550115291051,0,19.5569652164638,3.39585220851639,0,0,0,0,0,0,0,0,0,0,0.251335208800269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189491411770485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.7477225684984,20.5120451536356,0,0,0,0,0,0,0,0,0,0,0,53.33933852602,0.141940085208269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.36175842301515,0.540183282093931,0.129358683782755,0.214337035031592,0.177340233642274,0,0.329098041204242,0.304464949114599,0,0,0.220528398054962,0,0,0,0,0,0,10.7546675166096,0,0,0,0,0,0,1.35982743995084,0.419854356970974,0.414599921413271,0,0,0,0,0,0,0,0,0,0,0,0.56369293868419,0,0,0,0,0,0.117357238645754,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.5487352250963,12.9892923801925,19.7939851698086,9.73922372846974,11.6860163993708,14.3867329151835,20.3956352295219,11.4753825039407,10.8077088773813,12.6879874515577,11.39072685854,0.415149390336707,1.99512436700516,1.19513524027894,0.972426868273176,1.46729213839588,0.919217542250071,0.44449345560323,0.824140228955577,0.962757628775446,0.505394423527595,1.2673964994512,0.943131706930381,0.749132059759059,0.576226371643824,0.918967503289812,0.952587382566147,0.579421629724277,0.192909220463705,0.824171801606613,0.588795680537589,1.37147700954166,0.354951612318675,0,0.436039249896986,1.69396884747595,1.01537529470012,1.09756783723664,0.789209134313529,0.407412341537585,1.12228454331548,0.830445126869219,0.394017929502254,0.409231043169689,0.154936841185966,0.771626443924566,1.99848462350357,0.935726433781634,1.28922632428979,0.191288332068843,0.220591419119515,0.231867835620421|short_description=p3@Gad2}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:14417 | |||
|HGNC= | |||
|MCL_coexpression_id=251 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:P48320,uniprot:Q548L4,uniprot:Q3URJ3 | |||
|association_with_transcript=286bp_to_NM_008078,uc008ini.1,uc008inj.1,uc008ink.1_5end | |||
|cluster_id=chr2:22478133..22478157,+ | |||
|description=CAGE_peak_3_at_Gad2_5end | |||
|id=chr2:22478133..22478157,+ | |||
|ontology_enrichment_celltype=CL:0000117!6.22e-17!23;CL:0000337!6.22e-17!23;CL:0000540!4.87e-09!33;CL:0000047!4.87e-09!33;CL:0000031!4.87e-09!33;CL:0000404!4.87e-09!33;CL:0002319!2.33e-07!43;CL:0000221!5.36e-07!44;CL:0000133!5.36e-07!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.64e-24,23;CL:0000337,2.64e-24,23;CL:0000540,6.06e-15,33;CL:0000047,6.06e-15,33;CL:0000031,6.06e-15,33;CL:0000404,6.06e-15,33;CL:0000393,1.11e-11,39;CL:0000211,1.11e-11,39;CL:0002319,4.97e-10,43;CL:0000221,1.15e-09,44;CL:0000133,1.15e-09,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!1.77e-30!63;UBERON:0002346!2.64e-30!71;UBERON:0003075!2.64e-30!71;UBERON:0007284!2.64e-30!71;UBERON:0001049!4.80e-29!52;UBERON:0005068!4.80e-29!52;UBERON:0006241!4.80e-29!52;UBERON:0007135!4.80e-29!52;UBERON:0000955!1.36e-28!50;UBERON:0006238!1.36e-28!50;UBERON:0002616!1.45e-27!49;UBERON:0003056!3.82e-27!49;UBERON:0000073!6.96e-26!75;UBERON:0001016!6.96e-26!75;UBERON:0001017!2.51e-25!73;UBERON:0005743!2.51e-25!73;UBERON:0004121!2.27e-24!102;UBERON:0000924!2.27e-24!102;UBERON:0006601!2.27e-24!102;UBERON:0002020!4.43e-22!34;UBERON:0003080!5.88e-22!40;UBERON:0002780!5.17e-21!39;UBERON:0001890!5.17e-21!39;UBERON:0006240!5.17e-21!39;UBERON:0002791!1.13e-18!29;UBERON:0003528!1.13e-18!29;UBERON:0001893!1.13e-18!29;UBERON:0007811!3.72e-17!86;UBERON:0000153!5.78e-14!94;UBERON:0000956!1.94e-12!21;UBERON:0001869!1.94e-12!21;UBERON:0000203!1.94e-12!21;UBERON:0002619!2.07e-10!17;UBERON:0002021!5.65e-09!10;UBERON:0000411!5.65e-09!10;UBERON:0001950!5.65e-09!10;UBERON:0002420!1.47e-07!8;UBERON:0007245!1.47e-07!8;UBERON:0010009!1.47e-07!8;UBERON:0010011!1.47e-07!8;UBERON:0000454!1.47e-07!8;UBERON:0003076!1.71e-07!12;UBERON:0003057!1.71e-07!12;UBERON:0002298!9.57e-07!6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.72e-39,54;UBERON:0002346,4.78e-39,64;UBERON:0003075,4.78e-39,64;UBERON:0007284,4.78e-39,64;UBERON:0001049,5.50e-36,52;UBERON:0005068,5.50e-36,52;UBERON:0006241,5.50e-36,52;UBERON:0007135,5.50e-36,52;UBERON:0001017,3.48e-34,73;UBERON:0002020,2.01e-33,34;UBERON:0001016,6.60e-33,75;UBERON:0004121,1.19e-32,95;UBERON:0000924,1.19e-32,95;UBERON:0006601,1.19e-32,95;UBERON:0010371,1.47e-32,73;UBERON:0003056,3.72e-31,49;UBERON:0000955,8.35e-31,47;UBERON:0006238,8.35e-31,47;UBERON:0002616,2.50e-29,46;UBERON:0003528,5.68e-28,29;UBERON:0002791,5.68e-28,29;UBERON:0001893,5.68e-28,29;UBERON:0003080,6.24e-26,40;UBERON:0002780,1.54e-24,39;UBERON:0001890,1.54e-24,39;UBERON:0006240,1.54e-24,39;UBERON:0010314,4.66e-23,92;UBERON:0000956,4.75e-18,21;UBERON:0001869,4.75e-18,21;UBERON:0000203,4.75e-18,21;UBERON:0002619,1.85e-16,17;UBERON:0002021,2.06e-13,10;UBERON:0000411,2.06e-13,10;UBERON:0001950,2.06e-13,10;UBERON:0002420,3.73e-11,8;UBERON:0007245,3.73e-11,8;UBERON:0010009,3.73e-11,8;UBERON:0010011,3.73e-11,8;UBERON:0000454,3.73e-11,8;UBERON:0003076,3.75e-10,12;UBERON:0003057,3.75e-10,12;UBERON:0000025,4.13e-10,114;UBERON:0004111,1.55e-09,122;UBERON:0002240,1.45e-07,6;UBERON:0005174,1.45e-07,6;UBERON:0001137,1.45e-07,6;UBERON:0002950,3.82e-07,4;UBERON:0001891,3.82e-07,4;UBERON:0009616,3.82e-07,4;UBERON:0010286,3.82e-07,4;UBERON:0000369,4.57e-07,5;UBERON:0002435,4.57e-07,5;UBERON:0000204,4.57e-07,5;UBERON:0010082,4.57e-07,5 | |||
|phase1_expression=0,0,0,0,0,0,0,0.129123323441576,0.140788722151667,0,0,0,0,0,0,0,0,0,0,0,5.27268398936633,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288851619751275,0.166234645358492,0,0,0,0,0,0,0,0,0,0,0,0.218025156380447,0,0,0,0,0,0,0,0,0,0,4.04632921719196,5.28990979272033,5.70448263155561,0,0,0,0,0,0.898800331555214,0,1.03689612308478,1.08004750665353,0.630974884054146,5.14171771926846,6.18431914664518,13.1065155160001,11.3097655801519,15.6267193723704,38.540558349786,30.2618991261895,41.3201574459295,6.06676923558892,3.11057988248193,4.68822033501084,27.3599339021353,15.757353080887,22.1557459276375,9.42811473515737,7.40332740155335,3.54158947068071,0.075726193333184,0.604572480854284,0,0,0,0,0,0,0.842666520790511,0.170430322578058,0,0,0,0,0,0,0,0,0,0.79928715803342,0,0,0.173485326766136,0.304465478312141,0.230615497256059,0.150722640552623,0,0,0,0,0,0,0,0,0,14.3462590535658,14.0329293565015,0,0,0,0,40.2936819998973,69.9975922312499,15.0785222535437,20.5112697826886,18.1557974704535,51.3236470062113,47.3744488157852,0,0,0,0.631325567659422,0.260240885925407,1.60931473103431,3.42118046630164,2.86339153887859,7.55205140579739,6.53379973452734,4.31027932974753,2.06962696591213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.462801338662135,0,0,0.116765342367169,0,0,0,0,0.219550115291051,0,19.5569652164638,3.39585220851639,0,0,0,0,0,0,0,0,0,0,0.251335208800269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189491411770485,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.7477225684984,20.5120451536356,0,0,0,0,0,0,0,0,0,0,0,53.33933852602,0.141940085208269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.36175842301515,0.540183282093931,0.129358683782755,0.214337035031592,0.177340233642274,0,0.329098041204242,0.304464949114599,0,0,0.220528398054962,0,0,0,0,0,0,10.7546675166096,0,0,0,0,0,0,1.35982743995084,0.419854356970974,0.414599921413271,0,0,0,0,0,0,0,0,0,0,0,0.56369293868419,0,0,0,0,0,0.117357238645754,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.5487352250963,12.9892923801925,19.7939851698086,9.73922372846974,11.6860163993708,14.3867329151835,20.3956352295219,11.4753825039407,10.8077088773813,12.6879874515577,11.39072685854,0.415149390336707,1.99512436700516,1.19513524027894,0.972426868273176,1.46729213839588,0.919217542250071,0.44449345560323,0.824140228955577,0.962757628775446,0.505394423527595,1.2673964994512,0.943131706930381,0.749132059759059,0.576226371643824,0.918967503289812,0.952587382566147,0.579421629724277,0.192909220463705,0.824171801606613,0.588795680537589,1.37147700954166,0.354951612318675,0,0.436039249896986,1.69396884747595,1.01537529470012,1.09756783723664,0.789209134313529,0.407412341537585,1.12228454331548,0.830445126869219,0.394017929502254,0.409231043169689,0.154936841185966,0.771626443924566,1.99848462350357,0.935726433781634,1.28922632428979,0.191288332068843,0.220591419119515,0.231867835620421 | |||
|short_description=p3@Gad2 | |||
}} |
Revision as of 19:23, 4 August 2015
Short description: | p3@Gad2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Gad2_5end |
Coexpression cluster: | MCL_coexpression_mm9:251 |
Association with transcript: | 286bp_to_NM_008078, uc008ini.1, uc008inj.1, uc008ink.1_5end |
EntrezGene: | 14417 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.64e-24 | 23 |
neuroblast (sensu Vertebrata) | 2.64e-24 | 23 |
neuron | 6.06e-15 | 33 |
neuronal stem cell | 6.06e-15 | 33 |
neuroblast | 6.06e-15 | 33 |
electrically signaling cell | 6.06e-15 | 33 |
electrically responsive cell | 1.11e-11 | 39 |
electrically active cell | 1.11e-11 | 39 |
neural cell | 4.97e-10 | 43 |
ectodermal cell | 1.15e-09 | 44 |
neurectodermal cell | 1.15e-09 | 44 |