FF:12163-128H3: Difference between revisions

Revision as of 22:30, 9 July 2012

Name:	MC1+Gr1+ myeloid-derived suppressor cells cancer, donor3 (0128 3LL)
Species:	Mouse (Mus musculus)
Library ID:	{{{library_id}}}
Sample type:	{{{sample_category}}}
Genomic View:	UCSC
CAGEd-oPOSSUM:	link

Additional information

Sample information

strain	NA
tissue	bone marrow
dev stage	NA
sex	NA
age	NA
cell type	stem cell
cell line	NA
company	NA
collaboration	Hozumi Motohashi (Tohoku University Graduate School of Medicine)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	NA

Download raw sequence, BAM & CTSS

Mm9

BAM	CTSS
[{{{mm9bam}}} download]	[{{{mm9ctss}}} donwload]

Mm10

BAM	CTSS
[{{{mm10bam}}} download]	[{{{mm10ctss}}} donwload]

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

CNhs12542

0	0
1	0
10	0
100	0
1000	-0.0355
1001	-0.0749
1002	-0.116
1003	-0.123
1004	0
1005	1.244
1006	-0.3
1007	-0.186
1008	0
1009	-0.2
101	-0.235
1010	0
1011	-0.115
1012	0
1013	-0.0868
1014	-0.0874
1015	-0.12
1016	-0.594
1017	0
1018	0
1019	0
102	0
1020	0
1021	0
1022	-0.315
1023	0.617
1024	-0.14
1025	-0.0611
1026	0
1027	-0.048
1028	0
1029	0.00687
103	-0.0887
1030	0
1031	-0.911
1032	-0.768
1033	0.148
1034	0
1035	0
1036	0.214
1037	0
1038	-0.585
1039	-0.638
104	0
1040	-0.315
1041	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data no result for this sample

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12542

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	4.57167e-12
MA0003.1	MA0003.1	0.905
MA0004.1	MA0004.1	0.582
MA0006.1	MA0006.1	0.218
MA0007.1	MA0007.1	0.47
MA0009.1	MA0009.1	0.925
MA0014.1	MA0014.1	0.177
MA0017.1	MA0017.1	0.258
MA0018.2	MA0018.2	0.545
MA0019.1	MA0019.1	0.855
MA0024.1	MA0024.1	0.875
MA0025.1	MA0025.1	0.143
MA0027.1	MA0027.1	0.518
MA0028.1	MA0028.1	2.21434e-6
MA0029.1	MA0029.1	0.576
MA0030.1	MA0030.1	0.671
MA0031.1	MA0031.1	0.135
MA0035.2	MA0035.2	0.724
MA0038.1	MA0038.1	0.237
MA0039.2	MA0039.2	0.0478
MA0040.1	MA0040.1	0.135
MA0041.1	MA0041.1	0.562
MA0042.1	MA0042.1	0.852
MA0043.1	MA0043.1	0.00122
MA0046.1	MA0046.1	1.37792e-10
MA0047.2	MA0047.2	0.154
MA0048.1	MA0048.1	0.115
MA0050.1	MA0050.1	2.23317e-6
MA0051.1	MA0051.1	8.33824e-5
MA0052.1	MA0052.1	4.88255e-4
MA0055.1	MA0055.1	0.0816
MA0057.1	MA0057.1	0.884
MA0058.1	MA0058.1	0.828
MA0059.1	MA0059.1	0.587
MA0060.1	MA0060.1	0.753
MA0061.1	MA0061.1	0.0272
MA0062.2	MA0062.2	5.33287e-20
MA0065.2	MA0065.2	0.175
MA0066.1	MA0066.1	0.2
MA0067.1	MA0067.1	0.0237
MA0068.1	MA0068.1	0.83
MA0069.1	MA0069.1	0.535
MA0070.1	MA0070.1	0.488
MA0071.1	MA0071.1	0.4
MA0072.1	MA0072.1	0.145
MA0073.1	MA0073.1	0.697
MA0074.1	MA0074.1	0.451
MA0076.1	MA0076.1	1.95043e-7
MA0077.1	MA0077.1	0.111
MA0078.1	MA0078.1	0.844
MA0079.2	MA0079.2	0.377
MA0080.2	MA0080.2	2.72352e-15
MA0081.1	MA0081.1	2.40404e-4
MA0083.1	MA0083.1	0.146
MA0084.1	MA0084.1	0.799
MA0087.1	MA0087.1	0.566
MA0088.1	MA0088.1	0.579
MA0090.1	MA0090.1	0.0252
MA0091.1	MA0091.1	0.996
MA0092.1	MA0092.1	0.601
MA0093.1	MA0093.1	0.57
MA0099.2	MA0099.2	0.0306
MA0100.1	MA0100.1	0.0125
MA0101.1	MA0101.1	0.0211
MA0102.2	MA0102.2	2.13315e-8
MA0103.1	MA0103.1	0.824
MA0104.2	MA0104.2	0.172
MA0105.1	MA0105.1	1.4307e-4
MA0106.1	MA0106.1	0.531
MA0107.1	MA0107.1	0.0361
MA0108.2	MA0108.2	0.00838
MA0111.1	MA0111.1	0.647
MA0112.2	MA0112.2	0.00109
MA0113.1	MA0113.1	0.467
MA0114.1	MA0114.1	0.607
MA0115.1	MA0115.1	0.563
MA0116.1	MA0116.1	6.86261e-4
MA0117.1	MA0117.1	0.284
MA0119.1	MA0119.1	0.498
MA0122.1	MA0122.1	0.502
MA0124.1	MA0124.1	0.599
MA0125.1	MA0125.1	0.0447
MA0131.1	MA0131.1	0.438
MA0135.1	MA0135.1	0.78
MA0136.1	MA0136.1	4.0494e-32
MA0137.2	MA0137.2	0.00669
MA0138.2	MA0138.2	0.0876
MA0139.1	MA0139.1	0.361
MA0140.1	MA0140.1	0.893
MA0141.1	MA0141.1	0.282
MA0142.1	MA0142.1	0.185
MA0143.1	MA0143.1	0.116
MA0144.1	MA0144.1	0.0243
MA0145.1	MA0145.1	0.304
MA0146.1	MA0146.1	0.0746
MA0147.1	MA0147.1	0.157
MA0148.1	MA0148.1	0.322
MA0149.1	MA0149.1	0.297
MA0150.1	MA0150.1	1.2134e-4
MA0152.1	MA0152.1	0.421
MA0153.1	MA0153.1	0.00616
MA0154.1	MA0154.1	0.0363
MA0155.1	MA0155.1	0.804
MA0156.1	MA0156.1	1.73228e-29
MA0157.1	MA0157.1	0.254
MA0159.1	MA0159.1	0.0188
MA0160.1	MA0160.1	0.301
MA0162.1	MA0162.1	0.349
MA0163.1	MA0163.1	0.00517
MA0164.1	MA0164.1	0.495
MA0258.1	MA0258.1	0.00848
MA0259.1	MA0259.1	0.645

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12542

Novel motif	Logo	P-value
1	1	0.148
10	10	0.0491
100	100	0.727
101	101	0.698
102	102	0.383
103	103	0.102
104	104	0.918
105	105	0.514
106	106	0.112
107	107	0.8
108	108	0.82
109	109	0.0426
11	11	0.0842
110	110	0.181
111	111	0.52
112	112	0.0378
113	113	0.91
114	114	0.146
115	115	0.706
116	116	0.843
117	117	4.89974e-4
118	118	0.485
119	119	0.485
12	12	0.69
120	120	0.0727
121	121	0.667
122	122	0.502
123	123	0.319
124	124	0.909
125	125	0.2
126	126	0.406
127	127	0.209
128	128	0.266
129	129	0.337
13	13	0.049
130	130	0.468
131	131	0.681
132	132	0.92
133	133	0.195
134	134	0.836
135	135	0.258
136	136	0.338
137	137	0.0481
138	138	0.358
139	139	0.0699
14	14	0.385
140	140	0.834
141	141	0.594
142	142	0.0472
143	143	0.00159
144	144	0.965
145	145	0.102
146	146	0.896
147	147	0.691
148	148	0.298
149	149	0.946
15	15	0.0427
150	150	0.35
151	151	0.243
152	152	0.329
153	153	0.39
154	154	0.897
155	155	0.591
156	156	0.247
157	157	0.87
158	158	0.0906
159	159	0.674
160	160	0.946
161	161	0.0996
162	162	0.513
163	163	0.435
164	164	0.0132
165	165	0.17
166	166	0.547
167	167	0.726
168	168	0.327
169	169	0.00864
17	17	0.237
18	18	0.0888
19	19	0.576
2	2	0.325
20	20	0.0352
21	21	0.374
22	22	0.421
23	23	0.413
24	24	0.0913
25	25	0.174
26	26	0.135
27	27	0.767
28	28	0.128
29	29	0.012
3	3	0.0525
30	30	0.436
31	31	0.747
32	32	0.665
33	33	0.186
34	34	0.776
35	35	0.538
36	36	0.148
37	37	0.0653
38	38	0.281
39	39	0.786
4	4	0.702
40	40	0.234
41	41	0.0181
42	42	0.251
43	43	0.159
44	44	0.791
45	45	0.955
46	46	0.335
47	47	0.203
48	48	0.162
49	49	0.123
5	5	0.142
50	50	0.698
51	51	0.658
52	52	0.668
53	53	0.485
54	54	0.648
55	55	0.455
56	56	0.277
57	57	0.633
58	58	0.189
59	59	0.409
6	6	0.606
60	60	0.302
61	61	0.253
62	62	0.117
63	63	0.632
64	64	0.625
65	65	0.306
66	66	0.569
67	67	0.141
68	68	0.842
69	69	0.591
7	7	0.126
70	70	0.0928
71	71	0.0415
72	72	0.176
73	73	0.0507
74	74	0.121
75	75	0.00638
76	76	0.151
77	77	0.865
78	78	0.101
79	79	0.51
8	8	0.287
80	80	0.0315
81	81	0.578
82	82	0.579
83	83	0.679
84	84	0.872
85	85	0.328
86	86	0.122
87	87	0.165
88	88	0.47
89	89	0.739
9	9	0.43
90	90	0.088
91	91	0.592
92	92	0.55
93	93	0.679
94	94	0.0512
95	95	0.00657
96	96	0.822
97	97	0.86
98	98	0.419
99	99	0.264

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12542

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000268 cancer related muscle derived stem cell (Mouse) sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0002371 (somatic cell)
0000034 (stem cell)
0000355 (multi-potent skeletal muscle stem cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0060100 (musculoskeletal system cancer)
4045 (muscle cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001134 (skeletal muscle tissue)
0000479 (tissue)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002036 (striated muscle tissue)
0002385 (muscle tissue)
0010317 (germ layer / neural crest derived structure)
0001015 (musculature)
0002204 (musculoskeletal system)
0000383 (musculature of body)

FF: FANTOM5
0000102 (sample by type)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000267 (mouse muscle derived stem cell sample)
0000268 (cancer related muscle derived stem cell (Mouse) sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000355 (multi-potent skeletal muscle stem cell)

@@ Line 10: / Line 10: @@
 |def=
 |expression_enrichment_score=chr14:55330976..55330990,-!p1@Cebpe!2.23!167.53!Cebpe;;chr6:86619104..86619119,-!p1@Mxd1!2.02!793.66!Mxd1;;chr11:11586218..11586285,+!p1@Ikzf1!2.00!305.74!Ikzf1;;chr15:103085802..103085817,-!p4@Nfe2!1.96!110.46!Nfe2;;chr11:16908650..16908690,-!p1@Plek!1.91!469.60!Plek;;chr2:90936901..90936945,+!p1@Sfpi1!1.89!384.79!Sfpi1;;chr2:90936978..90937023,+!p3@Sfpi1!1.79!110.46!Sfpi1;;chr15:103085660..103085681,-!p1@Nfe2!1.78!87.43!Nfe2;;chr2:90936947..90936977,+!p2@Sfpi1!1.74!103.66!Sfpi1;;chr14:55330957..55330971,-!p2@Cebpe!1.73!52.35!Cebpe;;chr2:90922554..90922575,+!p4@Sfpi1!1.68!83.76!Sfpi1;;chr13:59923965..59924003,-!p2@Zcchc6!1.65!51.83!Zcchc6;;chr4:63064364..63064384,-!p1@Akna!1.64!120.41!Akna;;chr1:87546583..87546595,+!p1@Sp100!1.64!59.68!Sp100;;chr1:52065454..52065495,+!p1@Stat4!1.60!62.30!Stat4;;chr16:92826249..92826325,-!p1@Runx1!1.55!83.24!Runx1;;chr5:92391466..92391471,+!p2@Thap6!1.52!45.55!Thap6;;chr15:103085864..103085876,-!p5@Nfe2!1.52!32.46!Nfe2;;chr2:173044380..173044432,-!p1@Zbp1!1.47!65.96!Zbp1;;chr17:33766353..33766393,+!p2@Zfp414!1.46!74.86!Zfp414;;chr8:87225329..87225396,+!p1@Lyl1!1.42!93.71!Lyl1;;chr11:100683839..100683890,-!p2@Stat5b!1.39!53.92!Stat5b;;chr1:52065508..52065522,+!p2@Stat4!1.36!25.65!Stat4;;chr19:37511197..37511206,+!p3@Hhex!1.34!20.94!Hhex;;chr2:90922519..90922544,+!p6@Sfpi1!1.33!22.51!Sfpi1;;chr9:32348943..32349001,-!p1@Fli1!1.31!152.87!Fli1;;chr14:55331234..55331245,-!p4@Cebpe!1.31!19.37!Cebpe;;chr12:78063057..78063070,-!p3@Max!1.29!38.22!Max;;chr12:78063032..78063043,-!p4@Max!1.29!25.13!Max;;chr19:37509324..37509337,+!p1@Hhex!1.27!122.50!Hhex;;chr15:103085690..103085710,-!p3@Nfe2!1.27!19.37!Nfe2;;chr6:86619130..86619158,-!p2@Mxd1!1.26!241.34!Mxd1;;chr11:120491830..120491851,-!p10@Mafg!1.26!17.28!Mafg;;chr2:90936886..90936898,+!p5@Sfpi1!1.25!19.89!Sfpi1;;chr19:5447692..5447711,+!p2@Fosl1!1.25!16.75!Fosl1;;chr16:15887371..15887385,+!p1@Cebpd!1.22!516.19!Cebpd;;chr4:124805061..124805087,-!p1@Zc3h12a!1.22!48.16!Zc3h12a;;chr14:55331167..55331204,-!p3@Cebpe!1.19!14.66!Cebpe;;chr13:5860872..5860883,+!p3@Klf6!1.18!28.27!Klf6;;chr11:120491440..120491474,-!p3@Mafg!1.17!20.42!Mafg;;chr7:87170879..87170914,+!p2@Zfp710!1.16!30.89!Zfp710;;chr16:95680889..95680991,-!p1@Erg!1.15!106.80!Erg;;chr1:186556410..186556424,-!p1@Hlx!1.15!41.36!Hlx;;chr7:148452314..148452329,-!p1@Irf7!1.14!89.00!Irf7;;chr1:87497610..87497645,+!p1@Gm2427,p1@Sp140!1.13!12.56!Sp140;;chr12:86814833..86814846,+!p1@Fos!1.12!282.18!Fos;;chr12:78063146..78063159,-!p2@Max!1.12!31.93!Max;;chr15:103083199..103083215,-!p8@Nfe2!1.12!12.04!Nfe2;;chr4:63064395..63064410,-!p2@Akna!1.11!20.42!Akna;;chr2:120996813..120996829,-!p2@Zscan29!1.10!19.37!Zscan29;;chr5:108155037..108155060,-!p2@Gfi1!1.06!10.47!Gfi1;;chr10:80870405..80870428,-!p4@Nfic!1.04!27.22!Nfic;;chr2:173044357..173044377,-!p2@Zbp1!1.03!14.14!Zbp1;;chr2:90936867..90936874,+!p7@Sfpi1!1.02!9.42!Sfpi1;;chr11:100800641..100800669,-!p3@Stat3!1.01!16.23!Stat3;;chr1:92949999..92950097,+!p1@Lrrfip1!0.98!233.49!Lrrfip1;;chr8:87502608..87502623,-!p1@Junb!0.97!138.21!Junb;;chr1:52176315..52176343,+!p1@Stat1!0.96!119.89!Stat1;;chr5:145962698..145962742,-!p1@Zkscan14!0.96!38.74!Zkscan14;;chr12:87027598..87027652,+!p1@Batf!0.95!18.85!Batf;;chr5:32438894..32438908,+!p2@Fosl2!0.95!17.28!Fosl2;;chr5:140267510..140267555,+!p2@Mafk!0.92!17.80!Mafk;;chr16:92826232..92826245,-!p4@Runx1!0.92!7.33!Runx1;;chr5:32438831..32438878,+!p1@Fosl2!0.91!76.96!Fosl2;;chrX:137077716..137077734,-!p1@Tsc22d3!0.91!52.88!Tsc22d3;;chr6:92042363..92042413,+!p3@Nr2c2!0.91!17.80!Nr2c2;;chr6:16848395..16848416,-!p2@Tfec!0.91!8.38!Tfec;;chr14:79915425..79915501,+!p1@Elf1!0.90!63.87!Elf1;;chr14:56223010..56223067,+!p1@Irf9!0.90!57.59!Irf9;;chr8:74842952..74842970,+!p1@Klf2!0.89!477.45!Klf2;;chr16:55822241..55822258,-!p1@Nfkbiz!0.89!221.97!Nfkbiz;;chr16:23988711..23988727,-!p1@Bcl6!0.89!84.29!Bcl6;;chr14:98568532..98568561,-!p4@Dach1!0.89!10.47!Dach1;;chr13:5860776..5860796,+!p1@Klf6!0.88!169.62!Klf6;;chr16:3872286..3872315,-!p3@Zfp597!0.88!13.09!Zfp597;;chr11:11585678..11585745,+!p5@Ikzf1!0.88!9.95!Ikzf1;;chr7:31206743..31206761,+!p1@Nfkbid!0.87!8.90!Nfkbid;;chr19:53384985..53385042,+!p1@Mxi1!0.85!202.08!Mxi1;;chr14:32978970..32978984,+!p2@Gm6768,p2@Ncoa4!0.85!9.95!Ncoa4;;chr5:138187195..138187255,+!p1@Tsc22d4!0.84!269.09!Tsc22d4;;chr1:36364590..36364608,+!p1@Arid5a!0.84!63.87!Arid5a;;chr11:23670953..23671028,-!p1@Rel!0.83!35.08!Rel;;chr10:79389784..79389833,+!p1@Arid3a!0.83!32.98!Arid3a;;chr19:53384910..53384937,+!p3@Mxi1!0.83!17.28!Mxi1;;chr6:16848347..16848391,-!p1@Tfec!0.83!7.85!Tfec;;chr10:127080031..127080090,+!p1@Stat6!0.82!131.93!Stat6;;chr8:125778192..125778217,+!p2@Zfp276!0.82!16.75!Zfp276;;chr15:25914114..25914128,+!p2@Zfp622!0.81!23.56!Zfp622;;chr16:8672238..8672254,-!p2@Carhsp1,p2@Gm9791!0.81!7.85!Carhsp1;;chr8:72520139..72520157,-!p6@Gatad2a!0.80!22.51!Gatad2a;;chr12:86940338..86940357,+!p1@Jdp2!0.79!56.02!Jdp2;;chr5:53981578..53981590,+!p4@Rbpj!0.79!6.81!Rbpj;;chr2:91490176..91490193,-!p2@Zfp408!0.79!6.81!Zfp408;;chr3:89191054..89191070,-!p5@Zbtb7b!0.79!5.24!Zbtb7b;;chr15:103083245..103083260,-!p7@Nfe2!0.79!5.24!Nfe2;;chr1:87495371..87495397,-!p1@Sp110!0.79!5.24!Sp110;;chr18:3337249..3337274,-!p17@Crem!0.79!5.24!Crem;;chr2:72817045..72817123,-!p1@Sp3!0.78!176.43!Sp3;;chr13:67461490..67461531,-!p1@Zfp595,p1@Zfp953!0.78!22.51!Zfp953;;chr7:19895384..19895399,-!p2@Fosb!0.78!7.33!Fosb;;chrX:45807329..45807370,-!p1@Elf4!0.77!37.69!Elf4;;chr5:77524231..77524245,-!p3@Hopx!0.77!13.09!Hopx;;chr6:124959131..124959160,+!p4@Zfp384!0.76!14.14!Zfp384;;chr12:113917014..113917034,+!p1@Zbtb42!0.76!8.90!Zbtb42;;chr11:98822093..98822104,+!p16@Rara!0.76!4.71!Rara;;chr15:103085821..103085828,-!p6@Nfe2!0.76!4.71!Nfe2;;chr1:52065530..52065548,+!p3@Stat4!0.76!4.71!Stat4;;chr14:98568971..98569025,-!p1@Dach1!0.75!39.26!Dach1;;chr2:169956656..169956684,-!p1@Zfp217!0.75!34.55!Zfp217;;chr11:100800671..100800770,-!p1@Stat3!0.74!162.82!Stat3;;chr3:89197216..89197258,-!p3@Zbtb7b!0.74!9.95!Zbtb7b;;chr8:123260252..123260264,+!p1@Irf8!0.73!34.55!Irf8;;chr10:82226833..82226864,-!p3@Nfyb!0.73!25.13!Nfyb;;chr11:3191741..3191769,+!p5@Patz1!0.73!5.76!Patz1;;chr7:49761065..49761106,-!p1@ENSMUST00000174407,p1@uc009gmb.1!0.72!25.65!Zfp141;;chr18:70727922..70728052,+!p1@Mbd2!0.71!167.00!Mbd2;;chrX:103123886..103123922,-!p3@Atrx!0.71!12.04!Atrx;;chr16:3872255..3872283,-!p4@Zfp597!0.71!6.28!Zfp597;;chr12:56593574..56593592,-!p1@Nfkbia!0.70!234.54!Nfkbia;;chr4:43575544..43575565,+!p2@Creb3!0.69!25.65!Creb3;;chr10:79390075..79390115,+!p2@Arid3a!0.69!14.66!Arid3a;;chr16:55966492..55966517,+!p2@Rpl24,p2@Zbtb11!0.69!5.24!Zbtb11;;chr1:87546602..87546617,+!p2@Sp100!0.69!4.71!Sp100;;chr11:53583544..53583559,+!p1@Irf1!0.68!72.25!Irf1;;chr7:135381498..135381509,-!p2@9130023H24Rik!0.68!6.81!9130023H24Rik;;chr10:127080091..127080100,+!p4@Stat6!0.68!5.76!Stat6;;chr11:98822081..98822092,+!p14@Rara!0.67!3.66!Rara;;chr14:98568502..98568516,-!p7@Dach1!0.67!3.66!Dach1;;chr1:170362273..170362317,-!p1@Pbx1!0.66!119.89!Pbx1;;chr16:87699206..87699229,+!p3@Bach1!0.66!22.51!Bach1;;chr5:138187181..138187192,+!p5@Tsc22d4!0.66!10.47!Tsc22d4;;chr18:3337339..3337397,-!p5@Crem!0.66!7.85!Crem;;chr14:79915502..79915514,+!p4@Elf1!0.66!5.76!Elf1;;chr2:126501847..126501876,-!p5@Gabpb1!0.66!4.19!Gabpb1;;chr12:72116953..72117050,+!p1@Arid4a!0.65!48.69!Arid4a;;chr17:21625946..21626024,+!p1@Zfp53!0.65!43.98!Zfp53;;chr19:40969182..40969226,+!p1@Zfp518a!0.65!34.03!Zfp518a;;chr17:47873985..47874056,+!p1@Tfeb!0.65!33.51!Tfeb;;chr17:88840082..88840127,+!p1@Foxn2!0.65!28.27!Foxn2;;chr4:135728581..135728668,+!p1@E2f2!0.65!18.85!E2f2;;chrX:7339829..7339855,+!p3@Tfe3!0.65!10.47!Tfe3;;chr18:83080278..83080293,+!p5@Zfp516!0.65!8.90!Zfp516;;chr18:55152206..55152251,-!p1@Zfp608!0.64!38.74!Zfp608;;chr9:57684520..57684612,-!p1@Arid3b!0.64!34.55!Arid3b;;chr3:135354289..135354334,-!p3@Nfkb1!0.64!19.89!Nfkb1;;chr14:79915521..79915539,+!p5@Elf1!0.64!4.19!Elf1;;chr18:39650303..39650371,-!p1@Nr3c1!0.63!44.50!Nr3c1;;chr7:56136362..56136400,-!p1@E2f8!0.63!24.61!E2f8;;chr2:48805015..48805042,+!p2@Mbd5!0.63!23.04!Mbd5;;chr7:50834947..50835010,+!p2@Zfp719!0.63!20.42!Zfp719;;chr6:29476690..29476724,+!p1@Irf5!0.63!17.80!Irf5;;chr7:19895354..19895369,-!p1@Fosb!0.63!4.71!Fosb;;chr8:47825107..47825145,+!p1@Irf2!0.62!151.30!Irf2;;chr10:82226781..82226825,-!p1@Nfyb!0.62!46.59!Nfyb;;chr8:72520162..72520197,-!p4@Gatad2a!0.62!19.37!Gatad2a;;chr16:55973950..55973977,+!p4@Rpl24,p4@Zbtb11!0.62!17.28!Zbtb11;;chr17:45692642..45692663,+!p1@Nfkbie!0.62!11.52!Nfkbie;;chrX:48558950..48559016,-!p1@Mbnl3!0.62!11.52!Mbnl3;;chr11:90249521..90249551,-!p3@Hlf!0.62!3.14!Hlf;;chr10:77517570..77517581,+!p1@Dnmt3l!0.62!3.14!Dnmt3l;;chr5:92391970..92391984,+!p5@Thap6!0.62!3.14!Thap6;;chr6:99385340..99385362,-!p11@Foxp1!0.62!3.14!Foxp1;;chr17:51972603..51972624,-!p9@Satb1!0.62!3.14!Satb1;;chr1:92950128..92950139,+!p4@Lrrfip1!0.62!3.14!Lrrfip1;;chr1:87546619..87546627,+!p3@Sp100!0.62!3.14!Sp100;;chr13:59924433..59924504,-!p1@Zcchc6!0.61!81.67!Zcchc6;;chr18:80904854..80904919,-!p2@Nfatc1!0.61!43.45!Nfatc1;;chr11:100800621..100800633,-!p5@Stat3!0.61!3.66!Stat3;;chr2:75542527..75542590,-!p1@Nfe2l2!0.60!321.44!Nfe2l2;;chr17:45570455..45570479,-!p2@Cdc5l!0.59!12.56!Cdc5l;;chr5:138186979..138187025,+!p4@Tsc22d4!0.59!12.56!Tsc22d4;;chr1:74634786..74634804,-!p5@Zfp142!0.59!4.19!Zfp142;;chr18:80904923..80904933,-!p3@Nfatc1!0.59!4.19!Nfatc1;;chr2:72817659..72817725,-!p5@Sp3!0.58!14.14!Sp3;;chr3:135271185..135271254,-!p4@Nfkb1!0.58!5.76!Nfkb1;;chr15:96118197..96118200,+!p3@Arid2!0.58!5.24!Arid2;;chr1:170361633..170361644,-!p11@Pbx1!0.58!5.24!Pbx1;;chr13:55431084..55431137,-!p1@Mxd3!0.57!25.65!Mxd3;;chr8:72663098..72663160,-!p2@LOC100048268,p2@Rfxank!0.57!16.23!Rfxank;;chr19:26681226..26681299,+!p7@Smarca2!0.57!7.33!Smarca2;;chr16:23988686..23988693,-!p2@Bcl6!0.57!6.28!Bcl6;;chr3:135354349..135354371,-!p6@Nfkb1!0.57!6.28!Nfkb1;;chr12:113916993..113917009,+!p2@Zbtb42!0.57!5.24!Zbtb42;;chr11:11585912..11585950,+!p6@Ikzf1!0.57!3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Zmat1!0.44!17.80!Zmat1;;chr5:140267476..140267493,+!p1@Mafk!0.44!13.61!Mafk;;chr7:56137011..56137041,-!p2@E2f8!0.44!4.19!E2f8;;chr5:104183477..104183548,+!p6@Aff1!0.44!4.19!Aff1;;chr5:67698263..67698272,+!p3@Slc30a9!0.44!3.14!Slc30a9;;chr4:135728181..135728203,+!p2@E2f2!0.44!2.62!E2f2;;chr5:31262609..31262693,-!p1@Preb!0.43!125.12!Preb;;chr10:22451112..22451136,-!p1@Tbpl1!0.43!58.63!Tbpl1;;chr2:75542592..75542609,-!p2@Nfe2l2!0.43!41.88!Nfe2l2;;chr11:4604645..4604705,+!p1@Zmat5!0.43!31.41!Zmat5;;chr1:133904183..133904211,+!p1@Elk4!0.43!20.42!Elk4;;chr14:98568761..98568814,-!p2@Dach1!0.43!16.23!Dach1;;chr10:85379814..85379844,-!p2@Prdm4!0.43!5.24!Prdm4;;chr18:55149778..55149798,-!p11@Zfp608!0.43!2.62!Zfp608;;chr16:11176363..11176458,-!p1@Zc3h7a!0.42!116.22!Zc3h7a;;chr3:19957802..19957857,+!p1@Hltf!0.42!41.36!Hltf;;chr3:152059628..152059666,+!p2@Gm8261,p2@Zzz3!0.42!19.89!Zzz3;;chr7:133838869..133838945,+!p2@Bola2!0.42!9.42!Bola2;;chr19:53384965..53384984,+!p4@Mxi1!0.42!6.28!Mxi1;;chr19:26679596..26679607,+!p8@Smarca2!0.42!4.19!Smarca2;;chr6:52664406..52664434,+!p3@Tax1bp1!0.42!2.09!Tax1bp1;;chr1:92950099..92950109,+!p3@Lrrfip1!0.42!2.09!Lrrfip1;;chr11:5420973..5420992,+!p1@Xbp1!0.41!246.58!Xbp1;;chr2:167514456..167514473,+!p1@Cebpb!0.41!104.18!Cebpb;;chr10:126727842..126727859,+!p1@Ddit3!0.41!66.49!Ddit3;;chr3:95021853..95021911,-!p1@Gabpb2!0.41!17.28!Gabpb2;;chr19:26679615..26679646,+!p3@Smarca2!0.41!15.71!Smarca2;;chr5:104121391..104121450,+!p3@Aff1!0.41!11.52!Aff1;;chr11:62272010..62272050,-!p2@Ncor1!0.41!6.81!Ncor1;;chr2:162880306..162880319,+!p3@Mybl2!0.41!2.62!Mybl2;;chr3:135354375..135354381,-!p10@Nfkb1!0.41!2.09!Nfkb1;;chr2:91076997..91077012,-!p4@Ddb2!0.41!1.57!Ddb2;;chr4:134708909..134708939,+!p3@Runx3!0.41!1.57!Runx3;;chr17:51972575..51972595,-!p13@Satb1!0.41!1.57!Satb1;;chr17:47906140..47906150,+!p6@Tfeb!0.41!1.57!Tfeb;;chr19:37511111..37511115,+!p2@Hhex!0.41!1.57!Hhex;;chr8:108582687..108582734,+!p4@Nfatc3!0.41!1.57!Nfatc3;;chr9:32349051..32349061,-!p5@Fli1!0.41!1.57!Fli1;;chr16:87699149..87699204,+!p2@Bach1!0.40!17.80!Bach1;;chr2:120996843..120996894,-!p1@Zscan29!0.40!13.61!Zscan29;;chr3:30995296..30995300,+!p6@Skil!0.40!2.09!Skil;;chr14:98568683..98568698,-!p6@Dach1!0.40!2.09!Dach1;;chr19:4397052..4397098,-!p1@Kdm2a!0.39!58.11!Kdm2a;;chr15:102236700..102236764,+!p1@Sp1!0.39!32.98!Sp1;;chr12:110031156..110031198,+!p2@Yy1!0.39!31.41!Yy1;;chr11:72990702..72990737,+!p1@LOC100047518,p1@Tax1bp3!0.39!20.94!Tax1bp3;;chr7:50568603..50568655,-!p1@Zfp715!0.39!12.56!Zfp715;;chr12:110031227..110031254,+!p3@Yy1!0.39!12.04!Yy1;;chr14:79881330..79881415,+!p3@Elf1!0.39!6.81!Elf1;;chr18:83080305..83080335,+!p2@Zfp516!0.39!6.28!Zfp516;;chr1:13364153..13364156,-!p5@Ncoa2!0.39!2.62!Ncoa2;;chr3:19957878..19957885,+!p2@Hltf!0.39!2.09!Hltf;;chr18:70728080..70728160,+!p2@Mbd2!0.38!41.88!Mbd2;;chr9:55785900..55785950,-!p1@Scaper!0.38!21.46!Scaper;;chr16:3744162..3744180,+!p2@Zfp263!0.38!5.24!Zfp263;;chr6:115803317..115803361,-!p2@Mbd4!0.38!4.71!Mbd4;;chr16:3884438..3884470,-!p2@Zfp597!0.38!4.19!Zfp597;;chr1:170361777..170361797,-!p10@Pbx1!0.38!3.14!Pbx1;;chr1:186556375..186556404,-!p3@Hlx!0.38!3.14!Hlx;;chr4:134708451..134708469,+!p1@Runx3!0.38!3.14!Runx3;;chr5:92391948..92391968,+!p3@Thap6!0.38!2.62!Thap6;;chrX:48559029..48559051,-!p7@Mbnl3!0.38!2.09!Mbnl3;;chr6:52663725..52663794,+!p1@Tax1bp1!0.37!320.92!Tax1bp1;;chr9:113840256..113840306,+!p1@Ubp1!0.37!45.55!Ubp1;;chr12:4484016..4484074,-!p1@Ncoa1!0.37!34.55!Ncoa1;;chr16:3884472..3884572,-!p1@Zfp597!0.37!16.75!Zfp597;;chr9:96620228..96620308,-!p3@Zbtb38!0.37!9.42!Zbtb38;;chr7:135020438..135020468,+!p1@Zfp646!0.37!8.38!Zfp646;;chr13:53076382..53076393,-!p2@Nfil3!0.37!2.62!Nfil3;;chrX:137077682..137077692,-!p5@Tsc22d3!0.37!2.62!Tsc22d3;;chr7:31208285..31208312,+!p3@Nfkbid!0.37!1.57!Nfkbid;;chr2:165818125..165818167,+!p1@Ncoa3!0.36!55.49!Ncoa3;;chr13:67627072..67627115,-!p1@Zfp58!0.36!38.74!Zfp87;;chr1:162836503..162836591,+!p1@Rc3h1!0.36!36.65!Rc3h1;;chr3:94819338..94819384,-!p1@Zfp687!0.36!18.85!Zfp687;;chr5:137043177..137043190,-!p2@Cux1!0.36!16.75!Cux1;;chr8:125778131..125778178,+!p1@Zfp276!0.36!8.90!Zfp276;;chr2:126501274..126501308,-!p2@Gabpb1!0.36!7.85!Gabpb1;;chr3:89197057..89197114,-!p1@Zbtb7b!0.36!6.28!Zbtb7b;;chr10:20880629..20880683,-!p1@Myb!0.36!5.24!Myb;;chr7:49761111..49761128,-!p2@ENSMUST00000174407,p2@uc009gmb.1!0.36!3.66!Zfp141;;chr12:85559762..85559778,-!p5@C130039O16Rik!0.36!2.62!C130039O16Rik;;chr15:25914138..25914146,+!p4@Zfp622!0.36!2.62!Zfp622;;chr8:112229401..112229419,+!p3@Zfp821!0.36!2.09!Zfp821;;chr3:87329568..87329589,+!p2@Etv3!0.36!2.09!Etv3;;chr5:9161692..9161762,-!p1@Dmtf1!0.35!87.95!Dmtf1;;chr15:25914152..25914206,+!p1@Zfp622!0.35!48.16!Zfp622;;chr18:76401546..76401613,+!p1@Smad2!0.35!42.41!Smad2;;chr10:33670996..33671069,-!p1@Zufsp!0.35!39.79!Zufsp;;chr14:47896467..47896523,-!p1@Wdhd1!0.35!24.08!Wdhd1;;chr5:65194720..65194738,+!p2@Klf3!0.35!10.47!Klf3;;chr10:126726021..126726053,-!p4@Mbd6!0.35!6.28!Mbd6;;chr10:41996471..41996487,-!p4@Fox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48818,-!p4@Nr3c1!0.08!1.05!Nr3c1;;chr18:3337503..3337536,-!p7@Crem!0.08!1.05!Crem;;chr17:44873393..44873418,-!p4@Runx2!0.08!1.05!Runx2;;chr11:106993257..106993268,-!p4@Bptf!0.08!1.05!Bptf;;chr3:133207369..133207376,-!p3@Tet2!0.08!0.52!Tet2;;chr2:32219200..32219213,+!p5@Ciz1!0.08!0.52!Ciz1;;chr16:3744192..3744206,+!p4@Zfp263!0.08!0.52!Zfp263;;chr7:30553662..30553669,+!p2@Zfp84!0.08!0.52!Zfp84;;chr5:125538905..125538910,-!p4@Ncor2!0.08!0.52!Ncor2;;chr10:127896346..127896384,+!p1@Smarcc2!0.07!41.36!Smarcc2;;chr5:139060930..139060975,-!p1@Zfp68!0.07!38.22!Zfp68;;chr10:67741461..67741483,-!p1@Arid5b!0.07!28.27!Arid5b;;chr4:116480137..116480178,-!p1@Toe1!0.07!10.99!Toe1;;chr13:42147211..42147244,+!p2@Hivep1!0.07!2.62!Hivep1;;chr2:166888058..166888105,-!p2@Znfx1!0.07!2.62!Znfx1;;chr18:55150011..55150059,-!p3@Zfp608!0.07!2.62!Zfp608;;chr18:39649534..39649569,-!p3@Nr3c1!0.07!2.62!Nr3c1;;chrX:98449805..98449834,+!p3@Foxo4!0.07!2.09!Foxo4;;chr14:75684121..75684132,+!p2@Zc3h13!0.07!2.09!Zc3h13;;chr16:43363152..43363186,+!p3@Zbtb20!0.07!1.57!Zbtb20;;chr8:72498246..72498263,-!p11@Gatad2a!0.07!1.57!Gatad2a;;chr14:75684203..75684214,+!p4@Zc3h13!0.07!1.05!Zc3h13;;chr6:92041489..92041500,+!p4@Nr2c2!0.07!1.05!Nr2c2;;chr10:80599248..80599261,+!p3@Zbtb7a!0.07!1.05!Zbtb7a;;chr11:96691273..96691286,-!p6@Nfe2l1!0.07!0.52!Nfe2l1;;chr11:4604619..4604634,+!p2@Zmat5!0.07!0.52!Zmat5;;chr10:80598968..80599012,+!p5@Zbtb7a!0.07!0.52!Zbtb7a;;chr7:20162663..20162678,+!p1@Zfp296!0.07!0.52!Zfp296;;chr8:47825203..47825225,+!p3@Irf2!0.07!0.52!Irf2;;chr17:44873258..44873281,-!p5@Runx2!0.07!0.52!Runx2;;chr15:79178013..79178028,+!p3@Maff!0.07!0.52!Maff;;chr11:99091744..99091778,-!p1@Smarce1!0.06!43.45!Smarce1;;chr5:21290933..21291050,-!p1@Dnajc2!0.06!38.74!Dnajc2;;chr2:153067094..153067130,-!p1@Plagl2!0.06!25.13!Plagl2;;chr4:102787007..102787050,+!p1@Mier1!0.06!16.23!Mier1;;chr2:73730596..73730612,-!p3@Atf2,p3@LOC100047997!0.06!12.56!Atf2;;chr15:101097270..101097290,+!p1@Nr4a1!0.06!9.95!Nr4a1;;chr6:47785649..47785724,+!p1@Zfp398!0.06!7.85!Zfp398;;chr8:125897750..125897758,+!p2@Tcf25!0.06!6.28!Tcf25;;chr6:97757008..97757061,+!p1@Mitf!0.06!3.66!Mitf;;chr7:134169810..134169824,-!p7@Maz!0.06!3.14!Maz;;chr18:84758852..84758878,-!p2@Zfp407!0.06!3.14!Zfp407;;chr7:4866835..4866858,+!p2@Zfp628!0.06!3.14!Zfp628;;chr15:57526206..57526241,+!p2@Zhx2!0.06!2.62!Zhx2;;chr12:77471500..77471515,+!p2@Zbtb1!0.06!2.09!Zbtb1;;chr7:30875418..30875454,-!p2@Zfp566,p2@Zfp82!0.06!2.09!Zfp566;;chr19:28086084..28086124,-!p6@Rfx3!0.06!2.09!Rfx3;;chr5:138187583..138187602,+!p6@Tsc22d4!0.06!1.05!Tsc22d4;;chr4:45024818..45024846,-!p4@Zbtb5!0.06!1.05!Zbtb5;;chr1:95651267..95651284,-!p4@Thap4!0.06!1.05!Thap4;;chr7:56136402..56136420,-!p3@E2f8!0.06!1.05!E2f8;;chr19:23215554..23215567,+!p5@Klf9!0.06!0.52!Klf9;;chr10:41996451..41996462,-!p5@Foxo3!0.06!0.52!Foxo3;;chr6:99471147..99471161,-!p9@Foxp1!0.06!0.52!Foxp1;;chr7:134169459..134169468,-!p15@Maz!0.06!0.52!Maz;;chr1:64168228..64168250,-!p7@Klf7!0.06!0.52!Klf7;;chr4:118967105..118967123,-!p1@Ybx1!0.05!29.84!Ybx1;;chr14:52899256..52899305,+!p1@Tox4!0.05!25.13!Tox4;;chr15:38230448..38230470,-!p1@Klf10!0.05!20.42!Klf10;;chr1:93309740..93309811,-!p1@Hes6!0.05!19.89!Hes6;;chr1:72629819..72629856,+!p1@Smarcal1!0.05!18.32!Smarcal1;;chr11:6375995..6376105,-!p1@Purb!0.05!17.28!Purb;;chr10:127984778..127984824,-!p1@Zc3h10!0.05!10.47!Zc3h10;;chr5:36826883..36826951,-!p1@Tada2b!0.05!6.81!Tada2b;;chr13:64254457..64254497,-!p1@Zfp367!0.05!3.66!Zfp367;;chr16:33380881..33380909,+!p1@Zfp148!0.05!3.66!Zfp148;;chr19:28085485..28085544,-!p5@Rfx3!0.05!3.14!Rfx3;;chr17:27693525..27693538,+!p5@Hmga1!0.05!2.62!Hmga1;;chr1:138521510..138521526,+!p2@Zfp281!0.05!2.09!Zfp281;;chr5:147760339..147760350,+!p3@Gtf3a!0.05!2.09!Gtf3a;;chr1:138521574..138521597,+!p3@Zfp281!0.05!1.57!Zfp281;;chr15:50720601..50720630,-!p2@Trps1!0.05!1.57!Trps1;;chr13:112476433..112476448,+!p2@Mier3!0.05!1.05!Mier3;;chr15:25914217..25914232,+!p3@Zfp622!0.05!1.05!Zfp622;;chr5:3647720..3647733,-!p3@Gatad1!0.05!1.05!Gatad1;;chr5:139060979..139060986,-!p4@Zfp68!0.05!1.05!Zfp68;;chr17:21145981..21145998,+!p2@Zfp160!0.05!1.05!Zfp160;;chr17:84586544..84586592,-!p3@Zfp36l2!0.05!0.52!Zfp36l2;;
+|ffid_belonging_in_development=CL:0000355
 |fonse_cell_line=
 |fonse_cell_line_closure=

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FF:12163-128H3: Difference between revisions

From FANTOM5_SSTAR

Revision as of 22:30, 9 July 2012

CNhs12542

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0