FF:11850-124I5: Difference between revisions

Revision as of 09:53, 28 November 2014

Name:	CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool1
Species:	Mouse (Mus musculus)
Library ID:	CNhs13242
Sample type:	primary cells
Genomic View:	UCSC
CAGEd-oPOSSUM:	link

Additional information

Sample information

strain	Balb/c
tissue	ileum
dev stage	adult
sex	male
age	NA
cell type	enterocyte
cell line	NA
company	NA
collaboration	Shinji Fukuda (RCAI)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	RANKL_Ep+_a
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005872

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13242		CAGE		DRX008762		DRR009634

Accession ID Mm9

Library id		BAM		CTSS
CNhs13242		DRZ001059		DRZ002444

Download raw sequence, BAM & CTSS

Mm9

BAM	CTSS
[{{{mm9bam}}} download]	[{{{mm9ctss}}} donwload]

Mm10

BAM	CTSS
[{{{mm10bam}}} download]	[{{{mm10ctss}}} donwload]

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

CNhs13242

0	0
1	0
10	0
100	0
1000	-0.0355
1001	-0.0706
1002	-0.116
1003	-0.156
1004	0
1005	0.943
1006	-0.42
1007	0.217
1008	1.06
1009	-0.19
101	-0.409
1010	0
1011	-0.337
1012	0
1013	0.419
1014	-0.0874
1015	-0.364
1016	-0.465
1017	0
1018	0.579
1019	0
102	0
1020	0
1021	0
1022	0
1023	0
1024	-0.307
1025	0
1026	0
1027	-0.048
1028	0
1029	-0.176
103	-0.0848
1030	0
1031	-0.781
1032	1.094
1033	0
1034	0
1035	0
1036	-0.183
1037	0
1038	0.157
1039	0.0126
104	0
1040	-0.376
1041	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13242

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0181
MA0003.1	MA0003.1	0.377
MA0004.1	MA0004.1	0.718
MA0006.1	MA0006.1	0.0454
MA0007.1	MA0007.1	0.277
MA0009.1	MA0009.1	0.152
MA0014.1	MA0014.1	0.05
MA0017.1	MA0017.1	5.43916e-34
MA0018.2	MA0018.2	0.0267
MA0019.1	MA0019.1	0.0258
MA0024.1	MA0024.1	2.55729e-5
MA0025.1	MA0025.1	0.248
MA0027.1	MA0027.1	0.676
MA0028.1	MA0028.1	0.0377
MA0029.1	MA0029.1	0.892
MA0030.1	MA0030.1	0.345
MA0031.1	MA0031.1	0.201
MA0035.2	MA0035.2	3.27086e-6
MA0038.1	MA0038.1	0.686
MA0039.2	MA0039.2	7.2344e-6
MA0040.1	MA0040.1	0.178
MA0041.1	MA0041.1	0.22
MA0042.1	MA0042.1	0.271
MA0043.1	MA0043.1	0.11
MA0046.1	MA0046.1	4.40257e-51
MA0047.2	MA0047.2	0.0328
MA0048.1	MA0048.1	0.276
MA0050.1	MA0050.1	1.69843e-4
MA0051.1	MA0051.1	1.06129e-6
MA0052.1	MA0052.1	0.957
MA0055.1	MA0055.1	0.239
MA0057.1	MA0057.1	0.053
MA0058.1	MA0058.1	0.817
MA0059.1	MA0059.1	0.391
MA0060.1	MA0060.1	0.841
MA0061.1	MA0061.1	0.00179
MA0062.2	MA0062.2	4.08608e-5
MA0065.2	MA0065.2	6.59578e-17
MA0066.1	MA0066.1	0.124
MA0067.1	MA0067.1	0.375
MA0068.1	MA0068.1	0.11
MA0069.1	MA0069.1	0.899
MA0070.1	MA0070.1	0.384
MA0071.1	MA0071.1	0.0472
MA0072.1	MA0072.1	0.827
MA0073.1	MA0073.1	0.912
MA0074.1	MA0074.1	0.369
MA0076.1	MA0076.1	0.0857
MA0077.1	MA0077.1	0.46
MA0078.1	MA0078.1	0.806
MA0079.2	MA0079.2	0.0769
MA0080.2	MA0080.2	9.02861e-5
MA0081.1	MA0081.1	0.89
MA0083.1	MA0083.1	0.697
MA0084.1	MA0084.1	0.192
MA0087.1	MA0087.1	0.278
MA0088.1	MA0088.1	0.748
MA0090.1	MA0090.1	0.319
MA0091.1	MA0091.1	0.0398
MA0092.1	MA0092.1	0.708
MA0093.1	MA0093.1	0.756
MA0099.2	MA0099.2	1.49328e-14
MA0100.1	MA0100.1	0.793
MA0101.1	MA0101.1	2.48815e-6
MA0102.2	MA0102.2	0.836
MA0103.1	MA0103.1	2.31916e-6
MA0104.2	MA0104.2	0.0729
MA0105.1	MA0105.1	0.479
MA0106.1	MA0106.1	0.615
MA0107.1	MA0107.1	1.04385e-6
MA0108.2	MA0108.2	3.0289e-4
MA0111.1	MA0111.1	0.357
MA0112.2	MA0112.2	0.0174
MA0113.1	MA0113.1	0.939
MA0114.1	MA0114.1	3.31427e-42
MA0115.1	MA0115.1	6.66596e-18
MA0116.1	MA0116.1	0.905
MA0117.1	MA0117.1	0.137
MA0119.1	MA0119.1	0.0959
MA0122.1	MA0122.1	0.935
MA0124.1	MA0124.1	0.667
MA0125.1	MA0125.1	0.852
MA0131.1	MA0131.1	0.628
MA0135.1	MA0135.1	0.177
MA0136.1	MA0136.1	4.58941e-8
MA0137.2	MA0137.2	0.0226
MA0138.2	MA0138.2	0.975
MA0139.1	MA0139.1	0.338
MA0140.1	MA0140.1	0.0849
MA0141.1	MA0141.1	1.85482e-7
MA0142.1	MA0142.1	0.0154
MA0143.1	MA0143.1	0.11
MA0144.1	MA0144.1	0.00171
MA0145.1	MA0145.1	0.00394
MA0146.1	MA0146.1	0.0882
MA0147.1	MA0147.1	0.0679
MA0148.1	MA0148.1	0.048
MA0149.1	MA0149.1	0.0411
MA0150.1	MA0150.1	0.00367
MA0152.1	MA0152.1	0.178
MA0153.1	MA0153.1	1.35869e-42
MA0154.1	MA0154.1	0.103
MA0155.1	MA0155.1	0.776
MA0156.1	MA0156.1	1.43499e-5
MA0157.1	MA0157.1	0.908
MA0159.1	MA0159.1	8.89128e-4
MA0160.1	MA0160.1	1.73404e-6
MA0162.1	MA0162.1	0.91
MA0163.1	MA0163.1	0.735
MA0164.1	MA0164.1	0.799
MA0258.1	MA0258.1	0.133
MA0259.1	MA0259.1	0.467

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13242

Novel motif	Logo	P-value
1	1	0.306
10	10	0.556
100	100	0.818
101	101	0.852
102	102	0.848
103	103	0.945
104	104	0.646
105	105	0.114
106	106	0.0171
107	107	0.162
108	108	0.411
109	109	0.109
11	11	0.261
110	110	0.584
111	111	0.202
112	112	0.045
113	113	0.255
114	114	0.278
115	115	0.501
116	116	0.0746
117	117	0.089
118	118	0.713
119	119	0.158
12	12	0.656
120	120	0.526
121	121	0.265
122	122	0.601
123	123	0.0899
124	124	0.279
125	125	0.648
126	126	0.102
127	127	0.164
128	128	0.138
129	129	0.291
13	13	1.87764e-5
130	130	0.639
131	131	0.949
132	132	0.586
133	133	0.416
134	134	0.793
135	135	0.112
136	136	0.00993
137	137	0.765
138	138	0.231
139	139	0.251
14	14	0.69
140	140	0.73
141	141	0.292
142	142	0.655
143	143	0.119
144	144	0.252
145	145	0.236
146	146	0.231
147	147	0.744
148	148	0.995
149	149	0.902
15	15	0.221
150	150	0.327
151	151	0.947
152	152	0.0201
153	153	0.582
154	154	0.556
155	155	0.37
156	156	0.163
157	157	0.325
158	158	0.465
159	159	0.697
160	160	0.394
161	161	0.801
162	162	0.745
163	163	0.057
164	164	0.247
165	165	0.261
166	166	0.709
167	167	0.786
168	168	0.965
169	169	0.0904
17	17	0.0322
18	18	0.801
19	19	0.413
2	2	0.58
20	20	0.317
21	21	0.93
22	22	0.211
23	23	0.223
24	24	0.805
25	25	0.472
26	26	0.0257
27	27	0.634
28	28	0.22
29	29	0.314
3	3	0.306
30	30	0.217
31	31	0.899
32	32	0.484
33	33	0.225
34	34	0.92
35	35	0.876
36	36	0.647
37	37	0.0237
38	38	0.534
39	39	0.448
4	4	0.394
40	40	0.391
41	41	0.219
42	42	0.861
43	43	0.438
44	44	0.264
45	45	0.223
46	46	0.65
47	47	0.691
48	48	0.39
49	49	0.534
5	5	0.977
50	50	0.355
51	51	0.697
52	52	0.106
53	53	0.483
54	54	0.342
55	55	0.438
56	56	0.668
57	57	0.506
58	58	0.314
59	59	0.218
6	6	0.724
60	60	0.0214
61	61	0.64
62	62	0.282
63	63	0.147
64	64	0.914
65	65	0.396
66	66	0.682
67	67	0.398
68	68	0.0496
69	69	0.94
7	7	0.0651
70	70	0.0165
71	71	0.423
72	72	0.359
73	73	0.0132
74	74	0.708
75	75	0.0413
76	76	0.987
77	77	0.0494
78	78	0.0219
79	79	0.682
8	8	0.936
80	80	0.958
81	81	0.945
82	82	0.0711
83	83	0.703
84	84	0.0341
85	85	0.126
86	86	0.0945
87	87	0.0057
88	88	0.207
89	89	0.627
9	9	0.986
90	90	0.938
91	91	0.902
92	92	0.704
93	93	0.262
94	94	0.407
95	95	0.0054
96	96	0.897
97	97	0.855
98	98	0.594
99	99	0.634

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13242

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011113 mouse CD326-positive enterocyte isolated from mice- treated with RANKL- day03 sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000075 (columnar/cuboidal epithelial cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0002563 (intestinal epithelial cell)
0000255 (eukaryotic cell)
0000239 (brush border epithelial cell)
0000677 (gut absorptive cell)
0000212 (absorptive cell)
0002076 (endo-epithelial cell)
0002251 (epithelial cell of alimentary canal)
0000584 (enterocyte)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000160 (intestine)
0000483 (epithelium)
0001242 (intestinal mucosa)
0000479 (tissue)
0001007 (digestive system)
0000344 (mucosa)
0000064 (organ part)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0005911 (endo-epithelium)
0004923 (organ component layer)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0000060 (anatomical wall)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0000490 (unilaminar epithelium)
0001262 (wall of intestine)
0004786 (gastrointestinal system mucosa)
0000485 (simple columnar epithelium)
0003350 (epithelium of mucosa)
0003929 (gut epithelium)
0004808 (gastrointestinal system epithelium)
0001277 (intestinal epithelium)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0005409 (gastrointestinal system)

FF: FANTOM5
0000102 (sample by type)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000350 (experimentally modified sample)
0000383 (3 days sample)
0000627 (RANK ligand treatment sample)
0011113 (mouse CD326-positive enterocyte isolated from mice- treated with RANKL- day03 sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000223 (endodermal cell)

@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr10:80555320..80555378,-!p1@Creb3l3!2.95!1025.64!Creb3l3;;chr3:3634145..3634161,+!p1@Hnf4g!2.60!398.88!Hnf4g;;chr7:51787434..51787448,-!p1@Spib!2.59!549.99!Spib;;chr2:163372884..163372904,+!p1@Hnf4a!2.58!376.54!Hnf4a;;chr6:86619104..86619119,-!p1@Mxd1!2.44!2099.79!Mxd1;;chr5:148118639..148118715,-!p1@Cdx2!2.09!122.14!Cdx2;;chr16:38294860..38294924,-!p1@Nr1i2!2.01!100.50!Nr1i2;;chr1:193007123..193007139,-!p1@Atf3!1.93!445.64!Atf3;;chr1:137155026..137155042,-!p1@Elf3!1.88!411.79!Elf3;;chr10:88969376..88969395,-!p1@Nr1h4!1.88!75.38!Nr1h4;;chr14:63864056..63864102,-!p1@Gata4!1.85!118.30!Gata4;;chr5:115421065..115421088,-!p1@Hnf1a!1.85!70.14!Hnf1a;;chr8:77396591..77396639,+!p1@Isx!1.84!67.70!Isx;;chr2:180069370..180069409,-!p1@Gata5!1.81!73.98!Gata5;;chr12:86814833..86814846,+!p1@Fos!1.75!1204.31!Fos;;chr18:64499674..64499696,+!p1@Onecut2!1.74!90.38!Onecut2;;chr4:122673187..122673201,+!p2@Mycl1!1.73!91.08!Mycl1;;chr10:80555398..80555409,-!p2@Creb3l3!1.72!50.95!Creb3l3;;chr4:124805061..124805087,-!p1@Zc3h12a!1.68!140.29!Zc3h12a;;chr5:135582751..135582788,+!p1@Mlxipl!1.67!174.14!Mlxipl;;chr1:173144100..173144138,+!p2@Nr1i3!1.64!42.23!Nr1i3;;chr5:120121169..120121171,+!p4@Tbx3!1.60!68.75!Tbx3;;chr19:5560600..5560617,-!p1@Ovol1!1.59!45.72!Ovol1;;chr2:163372869..163372882,+!p3@Hnf4a!1.57!36.29!Hnf4a;;chr15:97738692..97738747,-!p1@Vdr!1.56!184.96!Vdr;;chr2:163332558..163332596,+!p2@Hnf4a!1.55!34.20!Hnf4a;;chr8:87502608..87502623,-!p1@Junb!1.53!511.95!Junb;;chr19:53384910..53384937,+!p3@Mxi1!1.53!91.08!Mxi1;;chr6:39068163..39068176,-!p2@Parp12!1.52!58.63!Parp12;;chr1:194979315..194979359,+!p1@Irf6!1.47!168.90!Irf6;;chr18:64499706..64499721,+!p2@Onecut2!1.47!40.13!Onecut2;;chr19:6996243..6996293,-!p1@Esrra!1.46!292.09!Esrra;;chr18:61195865..61195880,-!p1@Cdx1!1.46!27.92!Cdx1;;chr2:133377954..133377973,+!p1@Bmp2!1.45!84.80!Bmp2;;chr17:25707623..25707639,-!p1@Sox8!1.44!110.63!Sox8;;chr18:61195843..61195864,-!p2@Cdx1!1.43!26.17!Cdx1;;chr15:79177964..79177986,+!p1@Maff!1.42!84.45!Maff;;chr3:3508024..3508069,+!p2@Hnf4g!1.42!25.13!Hnf4g;;chr11:53583544..53583559,+!p1@Irf1!1.41!391.90!Irf1;;chr8:77397095..77397127,+!p2@Isx!1.41!24.78!Isx;;chr8:77397492..77397514,+!p3@Isx!1.38!23.03!Isx;;chr14:99697871..99697934,+!p1@Klf5!1.37!422.96!Klf5;;chr7:19895384..19895399,-!p2@Fosb!1.37!31.76!Fosb;;chr12:78063146..78063159,-!p2@Max!1.36!56.19!Max;;chr19:46380235..46380277,+!p3@Nfkb2!1.36!46.76!Nfkb2;;chr1:39250584..39250643,+!p1@Npas2!1.35!103.99!Npas2;;chr8:77396650..77396662,+!p4@Isx!1.35!21.64!Isx;;chr4:148178459..148178482,+!p4@Casz1!1.35!21.29!Casz1;;chr7:19895354..19895369,-!p1@Fosb!1.32!27.22!Fosb;;chr5:148118840..148118857,-!p2@Cdx2!1.31!19.54!Cdx2;;chr3:94176733..94176794,+!p1@Rorc!1.29!139.59!Rorc;;chr7:20214704..20214800,-!p1@Relb!1.29!58.98!Relb;;chr7:20213752..20213778,-!p2@Relb!1.28!18.15!Relb;;chr10:80555285..80555291,-!p4@Creb3l3!1.28!18.15!Creb3l3;;chr8:77397190..77397202,+!p5@Isx!1.26!17.10!Isx;;chr12:56593574..56593592,-!p1@Nfkbia!1.25!837.19!Nfkbia;;chr19:53384985..53385042,+!p1@Mxi1!1.25!505.32!Mxi1;;chr8:87643578..87643593,-!p1@Zfp791!1.24!33.85!Zfp791;;chr1:173144144..173144176,+!p1@Nr1i3!1.24!16.40!Nr1i3;;chr10:80555299..80555306,-!p3@Creb3l3!1.23!16.05!Creb3l3;;chr4:55545337..55545357,-!p1@Klf4!1.22!224.04!Klf4;;chr1:120524520..120524528,+!p1@Tfcp2l1!1.22!43.97!Tfcp2l1;;chr18:35020854..35020869,+!p1@Egr1!1.20!560.45!Egr1;;chr3:135354384..135354443,-!p1@Nfkb1!1.20!88.64!Nfkb1;;chr4:133109285..133109308,+!p1@Nr0b2!1.20!15.01!Nr0b2;;chr6:37391910..37391928,-!p3@Creb3l2!1.19!16.40!Creb3l2;;chr16:55822241..55822258,-!p1@Nfkbiz!1.18!434.13!Nfkbiz;;chr7:20408047..20408125,-!p1@Bcl3!1.18!159.48!Bcl3;;chr8:123260252..123260264,+!p1@Irf8!1.18!98.76!Irf8;;chr4:148178559..148178603,+!p1@Casz1!1.18!40.13!Casz1;;chr5:140267510..140267555,+!p2@Mafk!1.18!33.15!Mafk;;chr14:76887526..76887555,+!p10@Tsc22d1!1.18!14.31!Tsc22d1;;chr7:148452314..148452329,-!p1@Irf7!1.17!94.92!Irf7;;chr19:55816546..55816556,+!p3@Tcf7l2!1.17!52.00!Tcf7l2;;chr2:173044380..173044432,-!p1@Zbp1!1.17!32.45!Zbp1;;chr8:118231678..118231692,-!p2@Maf!1.16!120.40!Maf;;chr6:86619130..86619158,-!p2@Mxd1!1.15!185.31!Mxd1;;chr19:46379199..46379301,+!p1@Nfkb2!1.15!75.03!Nfkb2;;chr5:148118792..148118806,-!p3@Cdx2!1.15!13.26!Cdx2;;chr11:70500401..70500460,-!p3@Camta2!1.15!13.26!Camta2;;chr15:35225845..35225867,+!p1@Osr2!1.14!32.11!Osr2;;chr9:31720843..31720888,-!p1@Barx2!1.14!14.31!Barx2;;chr4:94718861..94718872,-!p2@Jun!1.13!93.18!Jun;;chr3:89197057..89197114,-!p1@Zbtb7b!1.13!42.57!Zbtb7b;;chr3:89197216..89197258,-!p3@Zbtb7b!1.10!24.43!Zbtb7b;;chr1:135320989..135321043,-!p1@Sox13!1.09!124.24!Sox13;;chr13:30076280..30076334,-!p3@E2f3!1.09!34.20!E2f3;;chr7:31206743..31206761,+!p1@Nfkbid!1.09!15.35!Nfkbid;;chr5:148118614..148118625,-!p4@Cdx2!1.09!11.17!Cdx2;;chr8:124806048..124806094,+!p1@Zfpm1!1.08!101.90!Zfpm1;;chr8:79426176..79426275,+!p1@Nr3c2!1.08!54.79!Nr3c2;;chr7:29551464..29551487,-!p2@Nfkbib!1.08!42.92!Nfkbib;;chr19:53385060..53385069,+!p6@Mxi1!1.08!15.70!Mxi1;;chr2:28477452..28477483,-!p1@Gfi1b!1.08!13.61!Gfi1b;;chr5:140267476..140267493,+!p1@Mafk!1.07!61.07!Mafk;;chr2:160192793..160192809,-!p1@Mafb!1.06!159.48!Mafb;;chr6:39068181..39068206,-!p3@Parp12!1.06!21.99!Parp12;;chr8:118231350..118231385,-!p7@Maf!1.06!15.35!Maf;;chr10:80600749..80600766,+!p2@Zbtb7a!1.05!53.74!Zbtb7a;;chr3:87329568..87329589,+!p2@Etv3!1.05!14.31!Etv3;;chr1:194979361..194979373,+!p2@Irf6!1.05!13.96!Irf6;;chr19:6996294..6996324,-!p2@Esrra!1.04!67.00!Esrra;;chr2:166888058..166888105,-!p2@Znfx1!1.04!32.45!Znfx1;;chr18:11052485..11052508,+!p2@Gata6!1.03!27.57!Gata6;;chr2:75543089..75543122,-!p3@Nfe2l2!1.03!9.77!Nfe2l2;;chr5:148118809..148118832,-!p5@Cdx2!1.03!9.77!Cdx2;;chr13:5860776..5860796,+!p1@Klf6!1.02!231.72!Klf6;;chr6:39068210..39068251,-!p1@Parp12!1.02!44.67!Parp12;;chr1:189433521..189433548,+!p5@Esrrg!1.02!9.42!Esrrg;;chr10:126727842..126727859,+!p1@Ddit3!1.01!268.36!Ddit3;;chr11:96690797..96690813,-!p1@Nfe2l1!1.01!181.47!Nfe2l1;;chr12:85657780..85657815,+!p2@Zfp410!1.01!24.43!Zfp410;;chr11:98636508..98636524,-!p3@Nr1d1!1.01!11.52!Nr1d1;;chr3:128916868..128916890,+!p1@Pitx2!1.00!12.56!Pitx2;;chr8:73222425..73222444,+!p2@Jund!1.00!9.07!Jund;;chr7:29551488..29551529,-!p1@Nfkbib!0.99!286.86!Nfkbib;;chr7:134519473..134519502,-!p3@Zfp747!0.99!11.87!Zfp747;;chr1:135320962..135320981,-!p2@Sox13!0.98!29.66!Sox13;;chr17:45692642..45692663,+!p1@Nfkbie!0.98!28.27!Nfkbie;;chr14:32978970..32978984,+!p2@Gm6768,p2@Ncoa4!0.98!13.61!Ncoa4;;chr19:5560570..5560582,-!p2@Ovol1!0.97!8.38!Ovol1;;chr2:91035197..91035237,-!p1@Nr1h3!0.96!17.10!Nr1h3;;chr7:19608891..19608895,-!p1@Foxa3!0.96!10.82!Foxa3;;chr19:5447692..5447711,+!p2@Fosl1!0.96!8.03!Fosl1;;chr14:63890519..63890539,-!p3@Gata4!0.96!8.03!Gata4;;chr4:94718879..94718898,-!p1@Jun!0.95!592.21!Jun;;chr11:100948597..100948637,+!p1@Mlx!0.95!195.08!Mlx;;chr18:75527009..75527027,+!p1@Smad7!0.95!171.00!Smad7;;chr2:91035254..91035271,-!p3@Nr1h3!0.94!9.77!Nr1h3;;chr5:32438831..32438878,+!p1@Fosl2!0.93!79.57!Fosl2;;chr5:120121020..120121049,+!p1@Tbx3!0.93!47.11!Tbx3;;chr11:98636531..98636559,-!p1@Nr1d1!0.93!43.97!Nr1d1;;chr8:125778192..125778217,+!p2@Zfp276!0.92!21.29!Zfp276;;chr5:76733981..76734018,-!p3@Clock!0.92!16.05!Clock;;chr15:85566051..85566080,+!p4@Ppara!0.92!8.72!Ppara;;chr2:180069410..180069421,-!p3@Gata5!0.92!7.33!Gata5;;chr8:118231705..118231722,-!p3@Maf!0.90!57.58!Maf;;chr7:134519511..134519534,-!p2@Zfp747!0.90!13.26!Zfp747;;chr9:31720903..31720918,-!p2@Barx2!0.90!6.98!Barx2;;chr14:63890545..63890560,-!p5@Gata4!0.90!6.98!Gata4;;chr5:32438894..32438908,+!p2@Fosl2!0.89!14.66!Fosl2;;chr17:45692676..45692695,+!p2@Nfkbie!0.89!14.31!Nfkbie;;chr18:36953486..36953503,+!p2@Zmat2!0.89!11.52!Zmat2;;chr4:43575544..43575565,+!p2@Creb3!0.88!40.48!Creb3;;chr7:20214018..20214024,-!p4@Relb!0.88!6.63!Relb;;chr2:147871627..147871641,-!p1@Foxa2!0.88!6.63!Foxa2;;chr18:75527030..75527055,+!p2@Smad7!0.87!42.92!Smad7;;chr3:30993616..30993634,+!p3@Skil!0.87!11.87!Skil;;chr4:148275237..148275311,+!p2@Casz1!0.86!26.87!Casz1;;chr10:44178521..44178557,-!p1@Prdm1!0.86!11.52!Prdm1;;chr19:6164433..6164446,+!p2@Batf2!0.86!6.28!Batf2;;chr18:11052642..11052659,+!p1@Gata6!0.85!32.80!Gata6;;chr11:53164533..53164548,+!p4@Aff4!0.85!18.50!Aff4;;chr18:36441119..36441158,+!p2@Pura!0.85!15.35!Pura;;chr12:32635051..32635062,-!p2@Hbp1!0.85!9.07!Hbp1;;chr3:89197551..89197606,-!p2@Zbtb7b!0.84!21.64!Zbtb7b;;chr3:135354452..135354475,-!p5@Nfkb1!0.84!15.70!Nfkb1;;chr5:53981592..53981616,+!p3@Rbpj!0.84!11.52!Rbpj;;chr2:173044357..173044377,-!p2@Zbp1!0.84!8.72!Zbp1;;chr9:63869890..63869908,-!p6@Smad6!0.84!8.03!Smad6;;chr9:31721051..31721068,-!p3@Barx2!0.84!5.93!Barx2;;chr5:148081686..148081715,+!p1@Pdx1!0.84!5.93!Pdx1;;chr7:35904304..35904320,+!p1@Cebpa!0.83!124.93!Cebpa;;chrX:7339938..7339963,+!p1@Tfe3!0.83!31.41!Tfe3;;chr5:65194752..65194769,+!p1@Klf3!0.82!204.50!Klf3;;chr8:77397026..77397036,+!p6@Isx!0.82!5.58!Isx;;chr18:64499879..64499895,+!p3@Onecut2!0.82!5.58!Onecut2;;chr17:28408632..28408682,+!p1@1810013A23Rik,p4@Ppard!0.82!5.58!Ppard;;chr8:72519989..72520007,-!p5@Gatad2a!0.81!28.27!Gatad2a;;chr7:20162663..20162678,+!p1@Zfp296!0.81!7.33!Zfp296;;chr14:79880971..79880992,+!p2@Elf1!0.80!73.28!Elf1;;chr4:119960301..119960359,-!p1@Foxo6!0.79!17.80!Foxo6;;chr10:80598209..80598236,+!p4@Zbtb7a!0.79!9.07!Zbtb7a;;chr15:85565338..85565355,+!p7@Ppara!0.79!5.23!Ppara;;chr2:180069640..180069660,-!p4@Gata5!0.79!5.23!Gata5;;chr3:87329494..87329565,+!p1@Etv3!0.78!83.75!Etv3;;chr7:87170879..87170914,+!p2@Zfp710!0.78!12.56!Zfp710;;chr13:112476264..112476282,+!p3@Mier3!0.78!7.33!Mier3;;chr12:58646974..58647003,-!p1@Foxa1!0.78!6.98!Foxa1;;chr19:10315179..10315241,-!p1@Gm98!0.77!56.19!Gm98;;chr4:124805092..124805135,-!p2@Zc3h12a!0.77!22.33!Zc3h12a;;chr13:112476433..112476448,+!p2@Mier3!0.77!9.77!Mier3;;chr10:80598968..80599012,+!p5@Zbtb7a!0.77!6.63!Zbtb7a;;chr8:77397169..77397182,+!p7@Isx!0.77!4.89!Isx;;chr1:194979383..194979393,+!p3@Irf6!0.77!4.89!Irf6;;chr17:27865882..27865901,-!p1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3032..78063043,-!p4@Max!0.58!4.19!Max;;chr14:63864337..63864381,-!p6@Gata4!0.58!2.79!Gata4;;chr2:24278519..24278530,-!p3@Pax8!0.58!2.79!Pax8;;chr2:180069423..180069434,-!p2@Gata5!0.58!2.79!Gata5;;chr1:92950128..92950139,+!p4@Lrrfip1!0.58!2.79!Lrrfip1;;chr6:52664439..52664461,+!p4@Tax1bp1!0.58!2.79!Tax1bp1;;chr11:83664365..83664383,+!p1@Hnf1b!0.58!2.79!Hnf1b;;chr11:98614335..98614349,+!p8@Thra!0.58!2.79!Thra;;chr11:83664334..83664353,+!p2@Hnf1b!0.58!2.79!Hnf1b;;chr18:11052516..11052525,+!p5@Gata6!0.58!2.79!Gata6;;chr5:138187195..138187255,+!p1@Tsc22d4!0.57!143.08!Tsc22d4;;chr17:21625946..21626024,+!p1@Zfp53!0.57!36.29!Zfp53;;chr6:115310872..115310899,+!p2@Pparg!0.57!5.23!Pparg;;chr10:80600465..80600489,+!p7@Zbtb7a!0.57!5.23!Zbtb7a;;chr9:122775126..122775133,-!p3@Zfp445!0.57!4.89!Zfp445;;chr2:75542527..75542590,-!p1@Nfe2l2!0.56!291.74!Nfe2l2;;chr5:53981692..53981768,+!p2@Rbpj!0.56!58.98!Rbpj;;chr5:104183219..104183236,+!p2@Aff1!0.56!22.33!Aff1;;chr17:15701263..15701277,-!p2@Prdm9!0.56!7.33!Prdm9;;chr10:44178474..44178487,-!p4@Prdm1!0.56!4.19!Prdm1;;chr18:73863393..73863460,-!p1@Smad4!0.55!288.60!Smad4;;chr8:73905806..73905876,-!p1@Nr2f6!0.55!67.70!Nr2f6;;chr17:48061409..48061431,-!p4@Foxp4!0.55!16.40!Foxp4;;chr17:46693153..46693169,-!p2@Srf!0.55!16.05!Srf;;chr15:85566184..85566238,+!p1@Ppara!0.55!4.19!Ppara;;chr14:14845141..14845207,+!p1@Atxn7!0.54!21.99!Atxn7;;chr6:108610513..108610528,+!p3@Bhlhe40!0.54!4.19!Bhlhe40;;chr5:115420882..115420896,-!p3@Hnf1a!0.54!2.44!Hnf1a;;chr5:138526401..138526410,+!p3@Zkscan1!0.54!2.44!Zkscan1;;chr10:61595830..61595846,+!p1@Neurog3!0.54!2.44!Neurog3;;chr11:5420973..5420992,+!p1@Xbp1!0.53!323.50!Xbp1;;chr6:37392095..37392154,-!p1@Creb3l2!0.53!96.67!Creb3l2;;chr2:83484658..83484678,+!p2@Zc3h15!0.53!48.16!Zc3h15;;chr17:24806629..24806672,+!p1@Zfp598!0.53!33.85!Zfp598;;chr14:19071466..19071550,-!p1@Nr1d2!0.53!20.59!Nr1d2;;chrX:7339915..7339935,+!p4@Tfe3!0.53!6.28!Tfe3;;chr17:47874123..47874156,+!p2@Tfeb!0.53!6.28!Tfeb;;chr1:13364477..13364492,-!p6@Ncoa2!0.53!3.14!Ncoa2;;chr15:75672337..75672362,-!p1@Zc3h3!0.52!33.85!Zc3h3;;chr6:72849808..72849837,-!p4@Kcmf1!0.52!8.38!Kcmf1;;chr10:67000609..67000625,+!p1@Egr2!0.52!6.28!Egr2;;chr4:99322820..99322845,+!p1@Foxd3!0.52!3.14!Foxd3;;chr10:127707602..127707633,+!p1@Stat2!0.51!25.48!Stat2;;chr7:52960555..52960662,+!p1@Dbp!0.51!24.78!Dbp;;chr5:145992626..145992652,+!p2@Zfp655!0.51!20.24!Zfp655;;chr17:15701286..15701323,-!p1@Prdm9!0.51!11.17!Prdm9;;chr11:102178937..102178956,-!p5@Ubtf!0.51!8.38!Ubtf;;chr3:51144740..51144743,-!p7@Elf2!0.51!4.19!Elf2;;chr4:135700687..135700719,+!p2@Id3!0.51!3.84!Id3;;chr10:107769229..107769238,+!p3@Pawr!0.51!3.49!Pawr;;chr16:8672238..8672254,-!p2@Carhsp1,p2@Gm9791!0.51!3.49!Carhsp1;;chr4:43575485..43575542,+!p1@Creb3!0.50!80.61!Creb3;;chr11:53164378..53164392,+!p2@Aff4!0.50!24.78!Aff4;;chr10:127984472..127984504,-!p2@Zc3h10!0.50!8.72!Zc3h10;;chr7:91558392..91558434,-!p1@Arnt2!0.50!7.33!Arnt2;;chr15:37162796..37162828,+!p1@Grhl2!0.50!4.19!Grhl2;;chr8:47825203..47825225,+!p3@Irf2!0.50!3.14!Irf2;;chr8:109817363..109817383,+!p2@Nfat5!0.49!57.93!Nfat5;;chr12:72116953..72117050,+!p1@Arid4a!0.49!33.50!Arid4a;;chr5:31504603..31504702,-!p1@Zfp513!0.49!27.92!Zfp513;;chr3:14578786..14578807,+!p2@E2f5!0.49!10.12!E2f5;;chr8:72498217..72498232,-!p8@Gatad2a!0.49!10.12!Gatad2a;;chr12:78063057..78063070,-!p3@Max!0.49!5.23!Max;;chr5:31262699..31262712,-!p2@Preb!0.49!3.84!Preb;;chr2:70313168..70313184,+!p1@Sp5!0.49!3.49!Sp5;;chr1:138846009..138846038,-!p3@Nr5a2!0.49!2.44!Nr5a2;;chr2:28477422..28477433,-!p2@Gfi1b!0.49!2.09!Gfi1b;;chr1:64579145..64579168,+!p6@Creb1!0.49!2.09!Creb1;;chr5:104182725..104182737,+!p17@Aff1!0.49!2.09!Aff1;;chr2:75543161..75543173,-!p5@Nfe2l2!0.49!2.09!Nfe2l2;;chr14:63890491..63890516,-!p2@Gata4!0.49!2.09!Gata4;;chr15:35225873..35225889,+!p2@Osr2!0.49!2.09!Osr2;;chr13:44825163..44825176,+!p18@Jarid2!0.49!2.09!Jarid2;;chr12:36219283..36219298,-!p2@Ahr!0.49!2.09!Ahr;;chr7:31065553..31065603,+!p@chr7:31065553..31065603,+!0.49!2.09!Thap8;;chr16:38294929..38294940,-!p2@Nr1i2!0.49!2.09!Nr1i2;;chr19:5447886..5447905,+!p1@Fosl1!0.49!2.09!Fosl1;;chr5:148081722..148081744,+!p2@Pdx1!0.49!2.09!Pdx1;;chr16:11176363..11176458,-!p1@Zc3h7a!0.48!132.96!Zc3h7a;;chr15:101097270..101097290,+!p1@Nr4a1!0.48!27.92!Nr4a1;;chr15:75672367..75672384,-!p2@Zc3h3!0.48!5.23!Zc3h3;;chr5:67698263..67698272,+!p3@Slc30a9!0.48!3.49!Slc30a9;;chr11:98636373..98636387,-!p5@Nr1d1!0.48!2.44!Nr1d1;;chr16:95924055..95924077,+!p1@Ets2!0.47!145.17!Ets2;;chr9:113840256..113840306,+!p1@Ubp1!0.47!56.88!Ubp1;;chr15:38230448..38230470,-!p1@Klf10!0.47!55.49!Klf10;;chr2:33324013..33324092,-!p1@Zbtb43!0.47!35.60!Zbtb43;;chr1:179372411..179372509,+!p1@Zfp238!0.47!33.15!Zfp238;;chr6:72849716..72849805,-!p1@Kcmf1!0.47!33.15!Kcmf1;;chr13:5860749..5860772,+!p2@Klf6!0.47!25.48!Klf6;;chr10:13685585..13685645,+!p2@Hivep2!0.47!8.72!Hivep2;;chr14:52634536..52634572,-!p4@Zfp219!0.47!7.33!Zfp219;;chr3:32264530..32264544,-!p2@Zmat3!0.47!3.49!Zmat3;;chr10:127080091..127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@@ Line 45: / Line 45: @@
 |is_obsolete=
 |library_id=CNhs13242
-|library_id_phase_based=1:CNhs13242
+|library_id_phase_based=2:CNhs13242
 |name=CD326+ enterocyte isolated from mice, treated with RANKL, day03, pool1
 |namespace=
@@ Line 51: / Line 51: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13242,LSID1006,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
 |repeat_enrich_byfamily=0.101465850761473,0,0,0,0,0,-0.096531696483695,0,0,0,0,-0.0843392403965415,0,0,0,0,0.114962552917919,0,-0.191893350882575,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.428418759941879,0,0.311102189727974,0,0,0,-0.209322725495826,-0.145425676608916,0.273665167649399,-0.984211366477826,-0.0399435321745141,0,0,0,0,0,0,0,0,0,0,0,0,-0.0660055475634404,0,0,0,0,0.0871570772992776,0,-0.130696565450787,0,0,-0.0437919914684825,-0.243225778194271,-0.310650657339386,-0.158091042771083,-0.104094974270439,0,-0.0780086007519514,-0.0364377460272736,0,0,0,-0.0438703969701547,0.11959920496952,-0.465910848358417,0.15109351099593,0,0,0,0,0,0.229925105835837,-0.0851089148667383,-0.55553555477302,0.014460461061529,0,0,0,0,0

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FF:11850-124I5: Difference between revisions

From FANTOM5_SSTAR

Revision as of 09:53, 28 November 2014

CNhs13242

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0