FFCP PHASE1:Mm9::chr8:12395892..12395919,+: Difference between revisions
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{{FFCP|EntrezGene=20664|HGNC=|MCL_coexpression_id=443|UniProt=Q80XF2|association_with_transcript=373bp_to_NM_009233,uc009kwa.2_5end|description=CAGE_peak_4_at_Sox1_5end|id=chr8:12395892..12395919,+|ontology_enrichment_celltype=CL:0000117!2.19e-19!23;CL:0000337!2.19e-19!23;CL:0002319!5.08e-15!43;CL:0000221!1.87e-14!44;CL:0000133!1.87e-14!44;CL:0000055!1.46e-11!50;CL:0000540!3.29e-11!33;CL:0000047!3.29e-11!33;CL:0000031!3.29e-11!33;CL:0000404!3.29e-11!33;CL:0000393!2.05e-08!39;CL:0000211!2.05e-08!39|ontology_enrichment_celltype_v019_2=CL:0000117,7.67e-22,23;CL:0000337,7.67e-22,23;CL:0002319,2.02e-17,43;CL:0000221,6.89e-17,44;CL:0000133,6.89e-17,44;CL:0000540,8.31e-14,33;CL:0000047,8.31e-14,33;CL:0000031,8.31e-14,33;CL:0000404,8.31e-14,33;CL:0000393,5.47e-11,39;CL:0000211,5.47e-11,39;CL:0002321,1.86e-08,70;CL:0002610,5.31e-07,3;CL:0002614,6.35e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!5.45e-43!73;UBERON:0005743!5.45e-43!73;UBERON:0000955!1.21e-41!50;UBERON:0006238!1.21e-41!50;UBERON:0000073!2.68e-41!75;UBERON:0001016!2.68e-41!75;UBERON:0002616!2.35e-40!49;UBERON:0001049!2.57e-40!52;UBERON:0005068!2.57e-40!52;UBERON:0006241!2.57e-40!52;UBERON:0007135!2.57e-40!52;UBERON:0000033!1.13e-37!63;UBERON:0002346!1.34e-34!71;UBERON:0003075!1.34e-34!71;UBERON:0007284!1.34e-34!71;UBERON:0004121!2.06e-33!102;UBERON:0000924!2.06e-33!102;UBERON:0006601!2.06e-33!102;UBERON:0003080!2.54e-32!40;UBERON:0003056!4.70e-32!49;UBERON:0002780!4.67e-31!39;UBERON:0001890!4.67e-31!39;UBERON:0006240!4.67e-31!39;UBERON:0002020!5.79e-29!34;UBERON:0002791!6.85e-27!29;UBERON:0003528!6.85e-27!29;UBERON:0001893!6.85e-27!29;UBERON:0007811!8.66e-23!86;UBERON:0000153!2.27e-19!94;UBERON:0000956!1.09e-18!21;UBERON:0001869!1.09e-18!21;UBERON:0000203!1.09e-18!21;UBERON:0002619!1.71e-15!17;UBERON:0000025!9.68e-10!114;UBERON:0002021!1.72e-09!10;UBERON:0000411!1.72e-09!10;UBERON:0001950!1.72e-09!10;UBERON:0002420!2.92e-09!8;UBERON:0007245!2.92e-09!8;UBERON:0010009!2.92e-09!8;UBERON:0010011!2.92e-09!8;UBERON:0000454!2.92e-09!8;UBERON:0004111!3.41e-08!122;UBERON:0003076!3.99e-08!12;UBERON:0003057!3.99e-08!12;UBERON:0002298!1.05e-07!6;UBERON:0001954!1.97e-07!7;UBERON:0003022!1.97e-07!7;UBERON:0002421!1.97e-07!7;UBERON:0000349!1.97e-07!7;UBERON:0002600!1.97e-07!7|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.08e-50,73;UBERON:0000073,1.32e-49,54;UBERON:0001016,4.58e-49,75;UBERON:0001049,1.04e-45,52;UBERON:0005068,1.04e-45,52;UBERON:0006241,1.04e-45,52;UBERON:0007135,1.04e-45,52;UBERON:0000955,1.31e-43,47;UBERON:0006238,1.31e-43,47;UBERON:0002616,1.09e-41,46;UBERON:0004121,1.47e-36,95;UBERON:0000924,1.47e-36,95;UBERON:0006601,1.47e-36,95;UBERON:0002346,2.33e-35,64;UBERON:0003075,2.33e-35,64;UBERON:0007284,2.33e-35,64;UBERON:0002020,6.44e-35,34;UBERON:0003080,2.28e-34,40;UBERON:0003528,2.95e-33,29;UBERON:0002791,2.95e-33,29;UBERON:0001893,2.95e-33,29;UBERON:0002780,1.72e-32,39;UBERON:0001890,1.72e-32,39;UBERON:0006240,1.72e-32,39;UBERON:0010371,7.90e-30,73;UBERON:0003056,1.29e-26,49;UBERON:0010314,1.04e-21,92;UBERON:0000956,3.14e-20,21;UBERON:0001869,3.14e-20,21;UBERON:0000203,3.14e-20,21;UBERON:0002619,2.63e-17,17;UBERON:0000025,1.07e-15,114;UBERON:0002420,1.79e-14,8;UBERON:0007245,1.79e-14,8;UBERON:0010009,1.79e-14,8;UBERON:0010011,1.79e-14,8;UBERON:0000454,1.79e-14,8;UBERON:0004111,4.73e-14,122;UBERON:0011216,1.63e-12,194;UBERON:0002021,2.32e-12,10;UBERON:0000411,2.32e-12,10;UBERON:0001950,2.32e-12,10;UBERON:0003076,5.39e-11,12;UBERON:0003057,5.39e-11,12;UBERON:0000369,3.75e-09,5;UBERON:0002435,3.75e-09,5;UBERON:0000204,3.75e-09,5;UBERON:0010082,3.75e-09,5;UBERON:0002950,6.87e-09,4;UBERON:0001891,6.87e-09,4;UBERON:0009616,6.87e-09,4;UBERON:0010286,6.87e-09,4;UBERON:0004733,5.36e-08,6;UBERON:0004732,5.36e-08,6;UBERON:0002028,5.36e-08,6;UBERON:0007277,5.36e-08,6;UBERON:0000483,4.27e-07,174;UBERON:0004684,5.31e-07,3;UBERON:0002275,5.31e-07,3;UBERON:0002038,6.35e-07,3;UBERON:0009663,6.35e-07,3;UBERON:0009661,6.35e-07,3;UBERON:0000125,6.35e-07,3;UBERON:0002308,6.35e-07,3;UBERON:0000119,6.50e-07,176|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.765389611359628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.63088047331563,1.75748946187577,0.777719596297134,0.979904951377538,2.87505128729943,0,0,0,0,0,0,2.22548106945558,4.23192783417626,0.633831403506179,0,0,0,0,0,3.59520132622086,6.14749288514487,1.8664130215526,1.35005938331691,0.630974884054146,1.99955689082663,1.10434270475807,1.95985278743926,4.31304619582064,0.919218786610021,6.60695285996332,3.70293280447044,5.9906547969935,1.71452174049252,1.9212405156506,2.6045668527838,4.18774498502071,5.6276261003168,5.50073691996516,2.35702868378934,0.711858403995515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150722640552623,0.117588707135705,0,0,0,0,0,0,0,0,3.80615036115011,2.72280718857492,0,0,0,0,7.18995069143149,8.23501085073528,3.39266750704734,3.82413504423008,4.34716277461562,5.81806524766768,6.32740925964255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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:20664 | |||
|HGNC= | |||
|MCL_coexpression_id=443 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q80XF2 | |||
|association_with_transcript=373bp_to_NM_009233,uc009kwa.2_5end | |||
|cluster_id=chr8:12395892..12395919,+ | |||
|description=CAGE_peak_4_at_Sox1_5end | |||
|id=chr8:12395892..12395919,+ | |||
|ontology_enrichment_celltype=CL:0000117!2.19e-19!23;CL:0000337!2.19e-19!23;CL:0002319!5.08e-15!43;CL:0000221!1.87e-14!44;CL:0000133!1.87e-14!44;CL:0000055!1.46e-11!50;CL:0000540!3.29e-11!33;CL:0000047!3.29e-11!33;CL:0000031!3.29e-11!33;CL:0000404!3.29e-11!33;CL:0000393!2.05e-08!39;CL:0000211!2.05e-08!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,7.67e-22,23;CL:0000337,7.67e-22,23;CL:0002319,2.02e-17,43;CL:0000221,6.89e-17,44;CL:0000133,6.89e-17,44;CL:0000540,8.31e-14,33;CL:0000047,8.31e-14,33;CL:0000031,8.31e-14,33;CL:0000404,8.31e-14,33;CL:0000393,5.47e-11,39;CL:0000211,5.47e-11,39;CL:0002321,1.86e-08,70;CL:0002610,5.31e-07,3;CL:0002614,6.35e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!5.45e-43!73;UBERON:0005743!5.45e-43!73;UBERON:0000955!1.21e-41!50;UBERON:0006238!1.21e-41!50;UBERON:0000073!2.68e-41!75;UBERON:0001016!2.68e-41!75;UBERON:0002616!2.35e-40!49;UBERON:0001049!2.57e-40!52;UBERON:0005068!2.57e-40!52;UBERON:0006241!2.57e-40!52;UBERON:0007135!2.57e-40!52;UBERON:0000033!1.13e-37!63;UBERON:0002346!1.34e-34!71;UBERON:0003075!1.34e-34!71;UBERON:0007284!1.34e-34!71;UBERON:0004121!2.06e-33!102;UBERON:0000924!2.06e-33!102;UBERON:0006601!2.06e-33!102;UBERON:0003080!2.54e-32!40;UBERON:0003056!4.70e-32!49;UBERON:0002780!4.67e-31!39;UBERON:0001890!4.67e-31!39;UBERON:0006240!4.67e-31!39;UBERON:0002020!5.79e-29!34;UBERON:0002791!6.85e-27!29;UBERON:0003528!6.85e-27!29;UBERON:0001893!6.85e-27!29;UBERON:0007811!8.66e-23!86;UBERON:0000153!2.27e-19!94;UBERON:0000956!1.09e-18!21;UBERON:0001869!1.09e-18!21;UBERON:0000203!1.09e-18!21;UBERON:0002619!1.71e-15!17;UBERON:0000025!9.68e-10!114;UBERON:0002021!1.72e-09!10;UBERON:0000411!1.72e-09!10;UBERON:0001950!1.72e-09!10;UBERON:0002420!2.92e-09!8;UBERON:0007245!2.92e-09!8;UBERON:0010009!2.92e-09!8;UBERON:0010011!2.92e-09!8;UBERON:0000454!2.92e-09!8;UBERON:0004111!3.41e-08!122;UBERON:0003076!3.99e-08!12;UBERON:0003057!3.99e-08!12;UBERON:0002298!1.05e-07!6;UBERON:0001954!1.97e-07!7;UBERON:0003022!1.97e-07!7;UBERON:0002421!1.97e-07!7;UBERON:0000349!1.97e-07!7;UBERON:0002600!1.97e-07!7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.08e-50,73;UBERON:0000073,1.32e-49,54;UBERON:0001016,4.58e-49,75;UBERON:0001049,1.04e-45,52;UBERON:0005068,1.04e-45,52;UBERON:0006241,1.04e-45,52;UBERON:0007135,1.04e-45,52;UBERON:0000955,1.31e-43,47;UBERON:0006238,1.31e-43,47;UBERON:0002616,1.09e-41,46;UBERON:0004121,1.47e-36,95;UBERON:0000924,1.47e-36,95;UBERON:0006601,1.47e-36,95;UBERON:0002346,2.33e-35,64;UBERON:0003075,2.33e-35,64;UBERON:0007284,2.33e-35,64;UBERON:0002020,6.44e-35,34;UBERON:0003080,2.28e-34,40;UBERON:0003528,2.95e-33,29;UBERON:0002791,2.95e-33,29;UBERON:0001893,2.95e-33,29;UBERON:0002780,1.72e-32,39;UBERON:0001890,1.72e-32,39;UBERON:0006240,1.72e-32,39;UBERON:0010371,7.90e-30,73;UBERON:0003056,1.29e-26,49;UBERON:0010314,1.04e-21,92;UBERON:0000956,3.14e-20,21;UBERON:0001869,3.14e-20,21;UBERON:0000203,3.14e-20,21;UBERON:0002619,2.63e-17,17;UBERON:0000025,1.07e-15,114;UBERON:0002420,1.79e-14,8;UBERON:0007245,1.79e-14,8;UBERON:0010009,1.79e-14,8;UBERON:0010011,1.79e-14,8;UBERON:0000454,1.79e-14,8;UBERON:0004111,4.73e-14,122;UBERON:0011216,1.63e-12,194;UBERON:0002021,2.32e-12,10;UBERON:0000411,2.32e-12,10;UBERON:0001950,2.32e-12,10;UBERON:0003076,5.39e-11,12;UBERON:0003057,5.39e-11,12;UBERON:0000369,3.75e-09,5;UBERON:0002435,3.75e-09,5;UBERON:0000204,3.75e-09,5;UBERON:0010082,3.75e-09,5;UBERON:0002950,6.87e-09,4;UBERON:0001891,6.87e-09,4;UBERON:0009616,6.87e-09,4;UBERON:0010286,6.87e-09,4;UBERON:0004733,5.36e-08,6;UBERON:0004732,5.36e-08,6;UBERON:0002028,5.36e-08,6;UBERON:0007277,5.36e-08,6;UBERON:0000483,4.27e-07,174;UBERON:0004684,5.31e-07,3;UBERON:0002275,5.31e-07,3;UBERON:0002038,6.35e-07,3;UBERON:0009663,6.35e-07,3;UBERON:0009661,6.35e-07,3;UBERON:0000125,6.35e-07,3;UBERON:0002308,6.35e-07,3;UBERON:0000119,6.50e-07,176 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.765389611359628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.63088047331563,1.75748946187577,0.777719596297134,0.979904951377538,2.87505128729943,0,0,0,0,0,0,2.22548106945558,4.23192783417626,0.633831403506179,0,0,0,0,0,3.59520132622086,6.14749288514487,1.8664130215526,1.35005938331691,0.630974884054146,1.99955689082663,1.10434270475807,1.95985278743926,4.31304619582064,0.919218786610021,6.60695285996332,3.70293280447044,5.9906547969935,1.71452174049252,1.9212405156506,2.6045668527838,4.18774498502071,5.6276261003168,5.50073691996516,2.35702868378934,0.711858403995515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150722640552623,0.117588707135705,0,0,0,0,0,0,0,0,3.80615036115011,2.72280718857492,0,0,0,0,7.18995069143149,8.23501085073528,3.39266750704734,3.82413504423008,4.34716277461562,5.81806524766768,6.32740925964255,0,0,0,0,0,0.229902104433473,0,0.150704817835715,0.204109497453984,0.12811372028485,0.0937017245597288,0.517406741478031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.20579897128254,4.01327988279209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.88991061978026,2.57865710502847,0,0,0,0,0,0,0,0,0,0,0,6.10510501201433,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.900305470156551,1.03486947026204,1.50035924522115,0.354680467284547,0,0.493647061806363,0.608929898229199,0,0,0,0,0,0,0,0,0,3.8939313422207,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564751842617067,1.38097570952153,1.14579102687879,1.03111909406213,2.05524755931193,2.2661816921691,2.02506750069542,2.2516060161211,2.71885445390523,4.65984280576638,0.103787347584177,0.399024873401031,0.341467211508268,0.486213434136588,0.419226325255965,0.367687016900028,0,0.618105171716683,0.320919209591815,0,0,0.565879024158229,0.280924522409647,0.128050304809739,0.287177344778066,0,0.231768651889711,0,0.412085900803307,0,0.342869252385415,0,0.238436189947321,0,0.0941093804153306,0.0846146078916765,0.182927972872773,0.526139422875686,0.271608227691724,0.561142271657738,0.118635018124174,0.0985044823755635,0,0.154936841185966,0,1.49886346762768,0.233931608445408,0,0,0,0 | |||
|short_description=p4@Sox1 | |||
}} |
Revision as of 01:31, 6 August 2015
Short description: | p4@Sox1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Sox1_5end |
Coexpression cluster: | MCL_coexpression_mm9:443 |
Association with transcript: | 373bp_to_NM_009233, uc009kwa.2_5end |
EntrezGene: | 20664 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 7.67e-22 | 23 |
neuroblast (sensu Vertebrata) | 7.67e-22 | 23 |
neural cell | 2.02e-17 | 43 |
ectodermal cell | 6.89e-17 | 44 |
neurectodermal cell | 6.89e-17 | 44 |
neuron | 8.31e-14 | 33 |
neuronal stem cell | 8.31e-14 | 33 |
neuroblast | 8.31e-14 | 33 |
electrically signaling cell | 8.31e-14 | 33 |
electrically responsive cell | 5.47e-11 | 39 |
electrically active cell | 5.47e-11 | 39 |
embryonic cell | 1.86e-08 | 70 |
raphe nuclei neuron | 5.31e-07 | 3 |
neuron of the substantia nigra | 6.35e-07 | 3 |