FF:11645-122D7: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005951 | |||
|accession_numbers=CAGE;DRX008842;DRR009714;DRZ001139;DRZ002524;DRZ012489;DRZ013874 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0004121,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0004684,UBERON:0001016,UBERON:0002275 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0004121,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0004684,UBERON:0001016,UBERON:0002275 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000540,CL:0000003,CL:0000548,CL:0002371,CL:0002319,CL:0000117,CL:0000393,CL:0000211,CL:0000404,CL:0000255,CL:0002610 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000540,CL:0000003,CL:0000548,CL:0002371,CL:0002319,CL:0000117,CL:0000393,CL:0000211,CL:0000404,CL:0000255,CL:0002610 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr16:91270004..91270023,+!p1@Olig1!2.45!316.12!Olig1;;chr5:138199361..138199441,+!p2@Tsc22d4!1.85!127.80!Tsc22d4;;chr15:76353005..76353021,-!p2@Scrt1!1.71!50.08!Scrt1;;chr17:48015839..48015915,-!p3@Foxp4!1.62!48.08!Foxp4;;chr7:116154364..116154444,+!p1@Tub!1.60!65.59!Tub;;chr9:91260616..91260653,-!p2@Zic1!1.59!37.94!Zic1;;chr1:42752574..42752621,+!p@chr1:42752574..42752621,+!1.55!43.32!Pou3f3;;chr8:24780125..24780143,+!p1@Zmat4!1.54!47.93!Zmat4;;chr19:19185671..19185693,-!p1@Rorb!1.53!77.26!Rorb;;chr12:30219426..30219506,+!p2@Myt1l!1.53!32.72!Myt1l;;chr16:91225808..91225824,+!p1@Olig2!1.53!32.56!Olig2;;chrX:34442872..34442899,-!p1@Nkrf!1.51!40.40!Nkrf;;chr3:95032091..95032183,-!p1@Mllt11!1.47!233.33!Mllt11;;chr18:36441119..36441158,+!p2@Pura!1.46!65.74!Pura;;chr15:76352434..76352488,-!p4@Scrt1!1.45!27.50!Scrt1;;chr10:67375368..67375433,-!p1@Zfp365!1.44!45.93!Zfp365;;chr7:146768691..146768707,-!p1@Nkx6-2!1.42!25.19!Nkx6-2;;chr9:91260594..91260612,-!p1@Zic1!1.40!24.27!Zic1;;chr17:25707623..25707639,-!p1@Sox8!1.39!98.15!Sox8;;chr4:150482563..150482655,-!p2@Camta1!1.39!82.64!Camta1;;chr15:76352677..76352737,-!p3@Scrt1!1.39!23.81!Scrt1;;chr10:67375146..67375208,-!p2@Zfp365!1.36!33.03!Zfp365;;chr6:55631042..55631102,-!p1@Neurod6!1.36!21.97!Neurod6;;chr2:163051181..163051205,+!p2@Tox2!1.33!20.28!Tox2;;chr4:58956447..58956510,+!p1@Zkscan16!1.30!41.01!Zkscan16;;chr2:65683890..65683907,+!p1@Csrnp3!1.30!36.25!Csrnp3;;chr19:55969923..55969944,+!p6@Tcf7l2!1.28!17.97!Tcf7l2;;chr2:127347067..127347093,-!p1@Kcnip3!1.25!27.96!Kcnip3;;chr15:78994907..78994926,-!p1@Sox10!1.23!40.86!Sox10;;chr12:54349410..54349461,+!p1@Npas3!1.23!19.35!Npas3;;chr2:168427068..168427115,-!p3@Nfatc2!1.23!15.98!Nfatc2;;chrX:108009761..108009788,+!p1@Pou3f4!1.21!15.21!Pou3f4;;chr9:69137716..69137744,+!p1@Rora!1.18!88.02!Rora;;chr7:148008023..148008092,-!p1@Zfp941!1.18!34.41!Zfp941;;chrX:34442842..34442866,-!p3@Nkrf!1.18!14.29!Nkrf;;chr11:98190918..98190951,-!p1@Neurod2!1.17!13.67!Neurod2;;chr11:98636531..98636559,-!p1@Nr1d1!1.15!75.27!Nr1d1;;chr1:6477388..6477419,+!p3@St18!1.15!13.21!St18;;chr19:55969946..55969973,+!p8@Tcf7l2!1.15!13.21!Tcf7l2;;chr15:103170533..103170556,-!p1@Zfp385a!1.13!46.24!Zfp385a;;chr4:150513630..150513686,-!p4@Camta1!1.13!14.29!Camta1;;chr16:91270091..91270143,+!p2@Olig1!1.13!12.60!Olig1;;chr19:55968967..55968991,+!p7@Tcf7l2!1.12!12.13!Tcf7l2;;chr6:134780163..134780197,+!p2@Crebl2!1.11!27.50!Crebl2;;chr3:95032197..95032208,-!p3@Mllt11!1.11!14.90!Mllt11;;chr8:112603658..112603674,+!p2@Zfp612!1.10!21.66!Zfp612;;chr3:34548909..34548927,+!p1@Sox2!1.10!19.66!Sox2;;chr8:107793688..107793736,+!p1@Hsf4!1.09!14.59!Hsf4;;chr2:163030186..163030204,+!p4@Tox2!1.09!11.37!Tox2;;chr10:84218800..84218829,+!p2@Rfx4!1.09!11.21!Rfx4;;chr11:96685444..96685473,-!p5@Nfe2l1!1.09!11.21!Nfe2l1;;chr6:145814003..145814056,-!p1@Bhlhe41!1.07!31.64!Bhlhe41;;chr19:19185697..19185711,-!p2@Rorb!1.06!13.52!Rorb;;chr7:17062114..17062141,-!p1@Npas1!1.06!10.60!Npas1;;chr19:26681865..26681900,+!p6@Smarca2!1.05!29.95!Smarca2;;chr6:145813905..145813932,-!p2@Bhlhe41!1.05!19.66!Bhlhe41;;chr2:163030219..163030258,+!p5@Tox2!1.05!10.14!Tox2;;chr7:52960700..52960719,+!p2@Dbp!1.03!11.98!Dbp;;chr3:95032184..95032195,-!p4@Mllt11!1.03!11.98!Mllt11;;chr3:95032213..95032226,-!p6@Mllt11!1.03!11.67!Mllt11;;chr11:84339016..84339044,-!p1@Lhx1!1.02!9.37!Lhx1;;chr3:34548946..34548972,+!p2@Sox2!1.01!10.29!Sox2;;chr7:52960555..52960662,+!p1@Dbp!1.00!78.65!Dbp;;chr3:95032515..95032553,-!p5@Mllt11!0.98!10.45!Mllt11;;chr3:101814061..101814094,+!p1@Nhlh2!0.98!8.60!Nhlh2;;chr2:81893535..81893548,+!p1@Zfp804a!0.98!8.60!Zfp804a;;chr8:12395603..12395621,+!p1@Sox1!0.98!8.60!Sox1;;chr10:67375342..67375365,-!p3@Zfp365!0.98!8.60!Zfp365;;chr14:19071466..19071550,-!p1@Nr1d2!0.97!58.37!Nr1d2;;chr3:95032558..95032641,-!p2@Mllt11!0.97!48.23!Mllt11;;chr15:103170516..103170531,-!p2@Zfp385a!0.97!20.28!Zfp385a;;chr2:127347094..127347111,-!p2@Kcnip3!0.97!13.82!Kcnip3;;chr15:103164702..103164778,-!p3@Zfp385a!0.97!9.98!Zfp385a;;chr1:91827756..91827773,-!p1@Gbx2!0.96!8.14!Gbx2;;chr19:10315179..10315241,-!p1@Gm98!0.95!85.10!Gm98;;chr7:91558392..91558434,-!p1@Arnt2!0.95!22.58!Arnt2;;chr6:145813964..145813994,-!p3@Bhlhe41!0.95!10.29!Bhlhe41;;chr4:154335024..154335039,+!p1@Hes5!0.95!9.68!Hes5;;chr5:28492230..28492257,+!p1@En2!0.95!7.99!En2;;chr5:98609885..98609900,+!p1@Prdm8!0.95!7.83!Prdm8;;chr14:49287186..49287225,-!p1@Otx2!0.95!7.83!Otx2;;chr16:91225654..91225671,+!p2@Olig2!0.95!7.83!Olig2;;chr11:90252223..90252240,-!p1@Hlf!0.94!66.36!Hlf;;chr4:22415443..22415506,-!p1@Pou3f2!0.94!7.68!Pou3f2;;chr5:122499831..122499891,-!p1@Cux2!0.93!11.67!Cux2;;chr7:91558472..91558512,-!p2@Arnt2!0.93!10.75!Arnt2;;chr9:69137672..69137702,+!p2@Rora!0.92!32.10!Rora;;chr7:52960888..52960902,+!p7@Dbp!0.92!7.37!Dbp;;chr11:90252108..90252134,-!p6@Hlf!0.92!7.37!Hlf;;chr11:96685487..96685512,-!p7@Nfe2l1!0.92!7.37!Nfe2l1;;chr2:163030164..163030178,+!p6@Tox2!0.92!7.37!Tox2;;chr12:72149325..72149343,+!p2@Arid4a!0.91!10.14!Arid4a;;chr11:90252071..90252093,-!p7@Hlf!0.91!7.22!Hlf;;chr4:150482353..150482386,-!p6@Camta1!0.91!7.22!Camta1;;chr10:84218895..84218909,+!p1@Rfx4!0.91!7.07!Rfx4;;chr12:30213247..30213333,+!p1@Myt1l!0.91!7.07!Myt1l;;chr11:70501419..70501483,-!p1@Camta2,p1@LOC100048818!0.90!75.11!Camta2;;chr2:81893447..81893468,+!p2@Zfp804a!0.90!6.91!Zfp804a;;chr11:90250944..90250982,-!p2@Hlf!0.89!11.52!Hlf;;chr14:122874619..122874634,+!p1@Zic2!0.89!6.76!Zic2;;chr2:65768174..65768247,+!p2@Csrnp3!0.88!6.61!Csrnp3;;chr2:127347042..127347058,-!p3@Kcnip3!0.87!6.45!Kcnip3;;chr11:90250894..90250916,-!p5@Hlf!0.87!6.45!Hlf;;chrX:137083127..137083138,-!p9@Tsc22d3!0.87!6.45!Tsc22d3;;chr7:52960663..52960677,+!p6@Dbp!0.87!6.45!Dbp;;chr3:54559463..54559493,+!p3@Smad9!0.86!11.83!Smad9;;chr2:168427120..168427138,-!p4@Nfatc2!0.86!6.30!Nfatc2;;chr19:55967803..55967834,+!p12@Tcf7l2!0.86!6.30!Tcf7l2;;chr2:25562263..25562314,+!p2@Bmyc!0.85!25.04!Bmyc;;chr11:90251852..90251855,-!p4@Hlf!0.85!7.53!Hlf;;chrX:55283799..55283813,+!p1@Zic3!0.85!6.14!Zic3;;chr10:67375223..67375240,-!p4@Zfp365!0.84!6.76!Zfp365;;chr11:21901608..21901634,-!p1@Otx1!0.84!5.99!Otx1;;chr8:12395892..12395919,+!p4@Sox1!0.84!5.99!Sox1;;chr7:6683123..6683142,-!p1@Peg3!0.83!319.19!Peg3;;chr1:170361991..170362015,-!p6@Pbx1!0.83!13.52!Pbx1;;chr7:91558537..91558558,-!p4@Arnt2!0.83!7.07!Arnt2;;chr1:179374784..179374800,+!p2@Zfp238!0.83!6.91!Zfp238;;chr19:55972767..55972779,+!p20@Tcf7l2!0.83!5.84!Tcf7l2;;chr1:122498955..122498968,+!p1@En1!0.83!5.68!En1;;chr2:181501745..181501778,+!p1@Myt1!0.83!5.68!Myt1;;chr4:124334894..124334899,+!p1@Pou3f1!0.82!7.53!Pou3f1;;chr13:44936126..44936164,+!p6@Jarid2!0.82!6.61!Jarid2;;chr8:112603610..112603656,+!p1@Zfp612!0.81!26.57!Zfp612;;chr2:77541432..77541474,-!p5@Zfp385b!0.81!5.53!Zfp385b;;chrX:137077151..137077227,-!p2@Tsc22d3!0.80!39.78!Tsc22d3;;chr9:69137648..69137656,+!p5@Rora!0.80!7.68!Rora;;chr14:118636238..118636257,-!p2@Sox21!0.80!5.38!Sox21;;chr19:55970060..55970071,+!p25@Tcf7l2!0.80!5.38!Tcf7l2;;chr3:66785201..66785226,-!p3@Shox2!0.80!5.38!Shox2;;chr7:30092993..30093076,+!p1@Dpf1!0.79!9.22!Dpf1;;chr12:86939997..86940040,+!p4@Jdp2!0.79!5.22!Jdp2;;chrX:95345005..95345053,+!p1@Ar!0.79!5.22!Ar;;chr7:52960730..52960762,+!p3@Dbp!0.78!6.61!Dbp;;chr3:66785181..66785199,-!p2@Shox2!0.78!5.07!Shox2;;chr9:106356278..106356292,+!p3@Pcbp4!0.77!8.91!Pcbp4;;chr18:36441165..36441172,+!p6@Pura!0.77!4.92!Pura;;chr14:34791937..34791977,-!p1@Zfp488!0.77!4.92!Zfp488;;chr2:151907546..151907561,+!p1@Scrt2!0.77!4.92!Scrt2;;chr7:17200307..17200370,-!p2@Grlf1!0.76!38.25!Grlf1;;chr10:80893711..80893784,-!p3@Nfic!0.76!27.03!Nfic;;chr11:69579401..69579427,+!p2@Zbtb4!0.76!19.97!Zbtb4;;chr11:116196664..116196679,-!p1@Foxj1!0.76!7.68!Foxj1;;chr8:79423672..79423727,+!p2@Nr3c2!0.76!6.14!Nr3c2;;chr6:117813087..117813121,+!p1@Zfp239!0.75!19.35!Zfp239;;chr7:38554763..38554780,-!p1@Zfp536!0.75!8.91!Zfp536;;chr15:103170561..103170572,-!p4@Zfp385a!0.75!7.07!Zfp385a;;chr17:87153028..87153049,+!p2@Epas1!0.74!103.07!Epas1;;chr11:69579472..69579529,+!p1@Zbtb4!0.74!25.35!Zbtb4;;chr13:72766250..72766273,+!p1@Irx2!0.74!7.37!Irx2;;chr12:30220074..30220102,+!p3@Myt1l!0.74!4.45!Myt1l;;chr19:55967842..55967878,+!p13@Tcf7l2!0.74!4.45!Tcf7l2;;chr1:140739014..140739032,-!p1@Lhx9!0.73!5.68!Lhx9;;chr8:87297878..87297935,-!p3@Nfix!0.72!10.14!Nfix;;chr14:52935860..52935874,-!p3@Sall2!0.72!6.45!Sall2;;chr3:34549096..34549111,+!p3@Sox2!0.72!4.30!Sox2;;chr2:181501710..181501742,+!p2@Myt1!0.72!4.30!Myt1;;chr11:98603160..98603171,+!p3@Thra!0.71!21.81!Thra;;chr2:25562315..25562344,+!p3@Bmyc!0.71!15.05!Bmyc;;chr2:56967334..56967366,-!p1@Nr4a2!0.71!9.06!Nr4a2;;chr5:120881900..120881914,+!p1@Lhx5!0.71!4.15!Lhx5;;chr7:91520922..91520956,-!p5@Arnt2!0.71!4.15!Arnt2;;chr1:189821714..189821761,+!p1@Esrrg!0.70!7.99!Esrrg;;chrX:90531838..90531861,+!p1@Arx!0.70!5.22!Arx;;chr11:98603119..98603130,+!p2@Thra!0.69!38.09!Thra;;chr8:125897750..125897758,+!p2@Tcf25!0.69!29.95!Tcf25;;chr7:25292160..25292213,+!p3@Zfp428!0.69!10.60!Zfp428;;chr8:79423144..79423178,+!p3@Nr3c2!0.69!5.68!Nr3c2;;chr13:78338076..78338104,-!p4@Nr2f1!0.69!5.07!Nr2f1;;chr1:38684414..38684427,-!p7@Aff3!0.69!4.76!Aff3;;chr14:104867201..104867258,-!p1@Pou4f1!0.68!5.53!Pou4f1;;chr19:23216166..23216191,+!p6@Klf9!0.68!5.22!Klf9;;chr18:36441100..36441113,+!p3@Pura!0.68!4.45!Pura;;chr15:95485240..95485257,-!p1@Dbx2!0.68!3.84!Dbx2;;chr1:191994550..191994623,-!p1@Prox1!0.67!29.03!Prox1;;chr17:48015645..48015689,-!p9@Foxp4!0.67!4.92!Foxp4;;chr2:38206744..38206766,+!p1@Lhx2!0.67!4.61!Lhx2;;chr8:107793737..107793757,+!p2@Hsf4!0.67!4.30!Hsf4;;chr8:12395874..12395885,+!p2@Sox1!0.67!3.69!Sox1;;chr2:162769220..162769252,+!p1@L3mbtl1!0.67!3.69!L3mbtl1;;chr2:65768149..65768173,+!p4@Csrnp3!0.67!3.69!Csrnp3;;chr5:122500142..122500167,-!p2@Cux2!0.66!8.45!Cux2;;chr13:72101161..72101177,-!p2@Irx1!0.66!5.22!Irx1;;chr11:98636508..98636524,-!p3@Nr1d1!0.66!4.61!Nr1d1;;chr15:76352832..76352900,-!p1@Scrt1!0.66!3.53!Scrt1;;chr9:99776566..99776612,-!p1@Sox14!0.66!3.53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| |expression_enrichment_score=chr16:91270004..91270023,+!p1@Olig1!2.45!316.12!Olig1;;chr5:138199361..138199441,+!p2@Tsc22d4!1.85!127.80!Tsc22d4;;chr15:76353005..76353021,-!p2@Scrt1!1.71!50.08!Scrt1;;chr17:48015839..48015915,-!p3@Foxp4!1.62!48.08!Foxp4;;chr7:116154364..116154444,+!p1@Tub!1.60!65.59!Tub;;chr9:91260616..91260653,-!p2@Zic1!1.59!37.94!Zic1;;chr1:42752574..42752621,+!p@chr1:42752574..42752621,+!1.55!43.32!Pou3f3;;chr8:24780125..24780143,+!p1@Zmat4!1.54!47.93!Zmat4;;chr19:19185671..19185693,-!p1@Rorb!1.53!77.26!Rorb;;chr12:30219426..30219506,+!p2@Myt1l!1.53!32.72!Myt1l;;chr16:91225808..91225824,+!p1@Olig2!1.53!32.56!Olig2;;chrX:34442872..34442899,-!p1@Nkrf!1.51!40.40!Nkrf;;chr3:95032091..95032183,-!p1@Mllt11!1.47!233.33!Mllt11;;chr18:36441119..36441158,+!p2@Pura!1.46!65.74!Pura;;chr15:76352434..76352488,-!p4@Scrt1!1.45!27.50!Scrt1;;chr10:67375368..67375433,-!p1@Zfp365!1.44!45.93!Zfp365;;chr7:146768691..146768707,-!p1@Nkx6-2!1.42!25.19!Nkx6-2;;chr9:91260594..91260612,-!p1@Zic1!1.40!24.27!Zic1;;chr17:25707623..25707639,-!p1@Sox8!1.39!98.15!Sox8;;chr4:150482563..150482655,-!p2@Camta1!1.39!82.64!Camta1;;chr15:76352677..76352737,-!p3@Scrt1!1.39!23.81!Scrt1;;chr10:67375146..67375208,-!p2@Zfp365!1.36!33.03!Zfp365;;chr6:55631042..55631102,-!p1@Neurod6!1.36!21.97!Neurod6;;chr2:163051181..163051205,+!p2@Tox2!1.33!20.28!Tox2;;chr4:58956447..58956510,+!p1@Zkscan16!1.30!41.01!Zkscan16;;chr2:65683890..65683907,+!p1@Csrnp3!1.30!36.25!Csrnp3;;chr19:55969923..55969944,+!p6@Tcf7l2!1.28!17.97!Tcf7l2;;chr2:127347067..127347093,-!p1@Kcnip3!1.25!27.96!Kcnip3;;chr15:78994907..78994926,-!p1@Sox10!1.23!40.86!Sox10;;chr12:54349410..54349461,+!p1@Npas3!1.23!19.35!Npas3;;chr2:168427068..168427115,-!p3@Nfatc2!1.23!15.98!Nfatc2;;chrX:108009761..108009788,+!p1@Pou3f4!1.21!15.21!Pou3f4;;chr9:69137716..69137744,+!p1@Rora!1.18!88.02!Rora;;chr7:148008023..148008092,-!p1@Zfp941!1.18!34.41!Zfp941;;chrX:34442842..34442866,-!p3@Nkrf!1.18!14.29!Nkrf;;chr11:98190918..98190951,-!p1@Neurod2!1.17!13.67!Neurod2;;chr11:98636531..98636559,-!p1@Nr1d1!1.15!75.27!Nr1d1;;chr1:6477388..6477419,+!p3@St18!1.15!13.21!St18;;chr19:55969946..55969973,+!p8@Tcf7l2!1.15!13.21!Tcf7l2;;chr15:103170533..103170556,-!p1@Zfp385a!1.13!46.24!Zfp385a;;chr4:150513630..150513686,-!p4@Camta1!1.13!14.29!Camta1;;chr16:91270091..91270143,+!p2@Olig1!1.13!12.60!Olig1;;chr19:55968967..55968991,+!p7@Tcf7l2!1.12!12.13!Tcf7l2;;chr6:134780163..134780197,+!p2@Crebl2!1.11!27.50!Crebl2;;chr3:95032197..95032208,-!p3@Mllt11!1.11!14.90!Mllt11;;chr8:112603658..112603674,+!p2@Zfp612!1.10!21.66!Zfp612;;chr3:34548909..34548927,+!p1@Sox2!1.10!19.66!Sox2;;chr8:107793688..107793736,+!p1@Hsf4!1.09!14.59!Hsf4;;chr2:163030186..163030204,+!p4@Tox2!1.09!11.37!Tox2;;chr10:84218800..84218829,+!p2@Rfx4!1.09!11.21!Rfx4;;chr11:96685444..96685473,-!p5@Nfe2l1!1.09!11.21!Nfe2l1;;chr6:145814003..145814056,-!p1@Bhlhe41!1.07!31.64!Bhlhe41;;chr19:19185697..19185711,-!p2@Rorb!1.06!13.52!Rorb;;chr7:17062114..17062141,-!p1@Npas1!1.06!10.60!Npas1;;chr19:26681865..26681900,+!p6@Smarca2!1.05!29.95!Smarca2;;chr6:145813905..145813932,-!p2@Bhlhe41!1.05!19.66!Bhlhe41;;chr2:163030219..163030258,+!p5@Tox2!1.05!10.14!Tox2;;chr7:52960700..52960719,+!p2@Dbp!1.03!11.98!Dbp;;chr3:95032184..95032195,-!p4@Mllt11!1.03!11.98!Mllt11;;chr3:95032213..95032226,-!p6@Mllt11!1.03!11.67!Mllt11;;chr11:84339016..84339044,-!p1@Lhx1!1.02!9.37!Lhx1;;chr3:34548946..34548972,+!p2@Sox2!1.01!10.29!Sox2;;chr7:52960555..52960662,+!p1@Dbp!1.00!78.65!Dbp;;chr3:95032515..95032553,-!p5@Mllt11!0.98!10.45!Mllt11;;chr3:101814061..101814094,+!p1@Nhlh2!0.98!8.60!Nhlh2;;chr2:81893535..81893548,+!p1@Zfp804a!0.98!8.60!Zfp804a;;chr8:12395603..12395621,+!p1@Sox1!0.98!8.60!Sox1;;chr10:67375342..67375365,-!p3@Zfp365!0.98!8.60!Zfp365;;chr14:19071466..19071550,-!p1@Nr1d2!0.97!58.37!Nr1d2;;chr3:95032558..95032641,-!p2@Mllt11!0.97!48.23!Mllt11;;chr15:103170516..103170531,-!p2@Zfp385a!0.97!20.28!Zfp385a;;chr2:127347094..127347111,-!p2@Kcnip3!0.97!13.82!Kcnip3;;chr15:103164702..103164778,-!p3@Zfp385a!0.97!9.98!Zfp385a;;chr1:91827756..91827773,-!p1@Gbx2!0.96!8.14!Gbx2;;chr19:10315179..10315241,-!p1@Gm98!0.95!85.10!Gm98;;chr7:91558392..91558434,-!p1@Arnt2!0.95!22.58!Arnt2;;chr6:145813964..145813994,-!p3@Bhlhe41!0.95!10.29!Bhlhe41;;chr4:154335024..154335039,+!p1@Hes5!0.95!9.68!Hes5;;chr5:28492230..28492257,+!p1@En2!0.95!7.99!En2;;chr5:98609885..98609900,+!p1@Prdm8!0.95!7.83!Prdm8;;chr14:49287186..49287225,-!p1@Otx2!0.95!7.83!Otx2;;chr16:91225654..91225671,+!p2@Olig2!0.95!7.83!Olig2;;chr11:90252223..90252240,-!p1@Hlf!0.94!66.36!Hlf;;chr4:22415443..22415506,-!p1@Pou3f2!0.94!7.68!Pou3f2;;chr5:122499831..122499891,-!p1@Cux2!0.93!11.67!Cux2;;chr7:91558472..91558512,-!p2@Arnt2!0.93!10.75!Arnt2;;chr9:69137672..69137702,+!p2@Rora!0.92!32.10!Rora;;chr7:52960888..52960902,+!p7@Dbp!0.92!7.37!Dbp;;chr11:90252108..90252134,-!p6@Hlf!0.92!7.37!Hlf;;chr11:96685487..96685512,-!p7@Nfe2l1!0.92!7.37!Nfe2l1;;chr2:163030164..163030178,+!p6@Tox2!0.92!7.37!Tox2;;chr12:72149325..72149343,+!p2@Arid4a!0.91!10.14!Arid4a;;chr11:90252071..90252093,-!p7@Hlf!0.91!7.22!Hlf;;chr4:150482353..150482386,-!p6@Camta1!0.91!7.22!Camta1;;chr10:84218895..84218909,+!p1@Rfx4!0.91!7.07!Rfx4;;chr12:30213247..30213333,+!p1@Myt1l!0.91!7.07!Myt1l;;chr11:70501419..70501483,-!p1@Camta2,p1@LOC100048818!0.90!75.11!Camta2;;chr2:81893447..81893468,+!p2@Zfp804a!0.90!6.91!Zfp804a;;chr11:90250944..90250982,-!p2@Hlf!0.89!11.52!Hlf;;chr14:122874619..122874634,+!p1@Zic2!0.89!6.76!Zic2;;chr2:65768174..65768247,+!p2@Csrnp3!0.88!6.61!Csrnp3;;chr2:127347042..127347058,-!p3@Kcnip3!0.87!6.45!Kcnip3;;chr11:90250894..90250916,-!p5@Hlf!0.87!6.45!Hlf;;chrX:137083127..137083138,-!p9@Tsc22d3!0.87!6.45!Tsc22d3;;chr7:52960663..52960677,+!p6@Dbp!0.87!6.45!Dbp;;chr3:54559463..54559493,+!p3@Smad9!0.86!11.83!Smad9;;chr2:168427120..168427138,-!p4@Nfatc2!0.86!6.30!Nfatc2;;chr19:55967803..55967834,+!p12@Tcf7l2!0.86!6.30!Tcf7l2;;chr2:25562263..25562314,+!p2@Bmyc!0.85!25.04!Bmyc;;chr11:90251852..90251855,-!p4@Hlf!0.85!7.53!Hlf;;chrX:55283799..55283813,+!p1@Zic3!0.85!6.14!Zic3;;chr10:67375223..67375240,-!p4@Zfp365!0.84!6.76!Zfp365;;chr11:21901608..21901634,-!p1@Otx1!0.84!5.99!Otx1;;chr8:12395892..12395919,+!p4@Sox1!0.84!5.99!Sox1;;chr7:6683123..6683142,-!p1@Peg3!0.83!319.19!Peg3;;chr1:170361991..170362015,-!p6@Pbx1!0.83!13.52!Pbx1;;chr7:91558537..91558558,-!p4@Arnt2!0.83!7.07!Arnt2;;chr1:179374784..179374800,+!p2@Zfp238!0.83!6.91!Zfp238;;chr19:55972767..55972779,+!p20@Tcf7l2!0.83!5.84!Tcf7l2;;chr1:122498955..122498968,+!p1@En1!0.83!5.68!En1;;chr2:181501745..181501778,+!p1@Myt1!0.83!5.68!Myt1;;chr4:124334894..124334899,+!p1@Pou3f1!0.82!7.53!Pou3f1;;chr13:44936126..44936164,+!p6@Jarid2!0.82!6.61!Jarid2;;chr8:112603610..112603656,+!p1@Zfp612!0.81!26.57!Zfp612;;chr2:77541432..77541474,-!p5@Zfp385b!0.81!5.53!Zfp385b;;chrX:137077151..137077227,-!p2@Tsc22d3!0.80!39.78!Tsc22d3;;chr9:69137648..69137656,+!p5@Rora!0.80!7.68!Rora;;chr14:118636238..118636257,-!p2@Sox21!0.80!5.38!Sox21;;chr19:55970060..55970071,+!p25@Tcf7l2!0.80!5.38!Tcf7l2;;chr3:66785201..66785226,-!p3@Shox2!0.80!5.38!Shox2;;chr7:30092993..30093076,+!p1@Dpf1!0.79!9.22!Dpf1;;chr12:86939997..86940040,+!p4@Jdp2!0.79!5.22!Jdp2;;chrX:95345005..95345053,+!p1@Ar!0.79!5.22!Ar;;chr7:52960730..52960762,+!p3@Dbp!0.78!6.61!Dbp;;chr3:66785181..66785199,-!p2@Shox2!0.78!5.07!Shox2;;chr9:106356278..106356292,+!p3@Pcbp4!0.77!8.91!Pcbp4;;chr18:36441165..36441172,+!p6@Pura!0.77!4.92!Pura;;chr14:34791937..34791977,-!p1@Zfp488!0.77!4.92!Zfp488;;chr2:151907546..151907561,+!p1@Scrt2!0.77!4.92!Scrt2;;chr7:17200307..17200370,-!p2@Grlf1!0.76!38.25!Grlf1;;chr10:80893711..80893784,-!p3@Nfic!0.76!27.03!Nfic;;chr11:69579401..69579427,+!p2@Zbtb4!0.76!19.97!Zbtb4;;chr11:116196664..116196679,-!p1@Foxj1!0.76!7.68!Foxj1;;chr8:79423672..79423727,+!p2@Nr3c2!0.76!6.14!Nr3c2;;chr6:117813087..117813121,+!p1@Zfp239!0.75!19.35!Zfp239;;chr7:38554763..38554780,-!p1@Zfp536!0.75!8.91!Zfp536;;chr15:103170561..103170572,-!p4@Zfp385a!0.75!7.07!Zfp385a;;chr17:87153028..87153049,+!p2@Epas1!0.74!103.07!Epas1;;chr11:69579472..69579529,+!p1@Zbtb4!0.74!25.35!Zbtb4;;chr13:72766250..72766273,+!p1@Irx2!0.74!7.37!Irx2;;chr12:30220074..30220102,+!p3@Myt1l!0.74!4.45!Myt1l;;chr19:55967842..55967878,+!p13@Tcf7l2!0.74!4.45!Tcf7l2;;chr1:140739014..140739032,-!p1@Lhx9!0.73!5.68!Lhx9;;chr8:87297878..87297935,-!p3@Nfix!0.72!10.14!Nfix;;chr14:52935860..52935874,-!p3@Sall2!0.72!6.45!Sall2;;chr3:34549096..34549111,+!p3@Sox2!0.72!4.30!Sox2;;chr2:181501710..181501742,+!p2@Myt1!0.72!4.30!Myt1;;chr11:98603160..98603171,+!p3@Thra!0.71!21.81!Thra;;chr2:25562315..25562344,+!p3@Bmyc!0.71!15.05!Bmyc;;chr2:56967334..56967366,-!p1@Nr4a2!0.71!9.06!Nr4a2;;chr5:120881900..120881914,+!p1@Lhx5!0.71!4.15!Lhx5;;chr7:91520922..91520956,-!p5@Arnt2!0.71!4.15!Arnt2;;chr1:189821714..189821761,+!p1@Esrrg!0.70!7.99!Esrrg;;chrX:90531838..90531861,+!p1@Arx!0.70!5.22!Arx;;chr11:98603119..98603130,+!p2@Thra!0.69!38.09!Thra;;chr8:125897750..125897758,+!p2@Tcf25!0.69!29.95!Tcf25;;chr7:25292160..25292213,+!p3@Zfp428!0.69!10.60!Zfp428;;chr8:79423144..79423178,+!p3@Nr3c2!0.69!5.68!Nr3c2;;chr13:78338076..78338104,-!p4@Nr2f1!0.69!5.07!Nr2f1;;chr1:38684414..38684427,-!p7@Aff3!0.69!4.76!Aff3;;chr14:104867201..104867258,-!p1@Pou4f1!0.68!5.53!Pou4f1;;chr19:23216166..23216191,+!p6@Klf9!0.68!5.22!Klf9;;chr18:36441100..36441113,+!p3@Pura!0.68!4.45!Pura;;chr15:95485240..95485257,-!p1@Dbx2!0.68!3.84!Dbx2;;chr1:191994550..191994623,-!p1@Prox1!0.67!29.03!Prox1;;chr17:48015645..48015689,-!p9@Foxp4!0.67!4.92!Foxp4;;chr2:38206744..38206766,+!p1@Lhx2!0.67!4.61!Lhx2;;chr8:107793737..107793757,+!p2@Hsf4!0.67!4.30!Hsf4;;chr8:12395874..12395885,+!p2@Sox1!0.67!3.69!Sox1;;chr2:162769220..162769252,+!p1@L3mbtl1!0.67!3.69!L3mbtl1;;chr2:65768149..65768173,+!p4@Csrnp3!0.67!3.69!Csrnp3;;chr5:122500142..122500167,-!p2@Cux2!0.66!8.45!Cux2;;chr13:72101161..72101177,-!p2@Irx1!0.66!5.22!Irx1;;chr11:98636508..98636524,-!p3@Nr1d1!0.66!4.61!Nr1d1;;chr15:76352832..76352900,-!p1@Scrt1!0.66!3.53!Scrt1;;chr9:99776566..99776612,-!p1@Sox14!0.66!3.53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| ||
Line 41: | Line 44: | ||
|is_a=EFO:0002091;;FF:0000205 | |is_a=EFO:0002091;;FF:0000205 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12619 | |||
|library_id_phase_based=2:CNhs12619 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;11645 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;11645 | |||
|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.primary_cell.hCAGE/Mouse%2520Neurons%2520-%2520raphe%252c%2520donor3.CNhs12619.11645-122D7.mm10.nobarcode.bam | |||
|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.primary_cell.hCAGE/Mouse%2520Neurons%2520-%2520raphe%252c%2520donor3.CNhs12619.11645-122D7.mm10.nobarcode.ctss.bed.gz | |||
|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.hCAGE/Mouse%2520Neurons%2520-%2520raphe%252c%2520donor3.CNhs12619.11645-122D7.mm9.nobarcode.bam | |||
|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.hCAGE/Mouse%2520Neurons%2520-%2520raphe%252c%2520donor3.CNhs12619.11645-122D7.mm9.ctss.bed.gz | |||
|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.hCAGE/Mouse%2520Neurons%2520-%2520raphe%252c%2520donor3.CNhs12619.11645-122D7.mm9.nobarcode.rdna.fa.gz | |||
|name=Mouse Neurons - raphe, donor3 | |name=Mouse Neurons - raphe, donor3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 46: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12619,LSID952,release012,COMPLETED | |profile_hcage=CNhs12619,LSID952,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|repeat_enrich_byfamily=-0.0354973027683022,0,0,0,0,0,0.206471895496942,0,0,0,0,-0.0843392403965415,0,0,0,0,0,0,0.0555969339203949,0,0,0,0,0,0,0,0,0,0,0,0,0.416929868811959,-0.558422792324031,0,0,0,0,0.041140765924383,-0.178293872027852,0.208018178957679,0.0191618416807156,0.444018987541094,0.371540395990803,0.317069529519254,0,0.0620577069359474,0,0,0,0,0,0,0,0,0.0620577069359474,-0.0660055475634404,0,0,0,0,0.0192107518530726,0,0.0310288534679737,0,0,0,-0.0619709369809365,-0.310650657339386,0.295728342864667,-0.0890592743848848,0,-0.015950893816004,0.149797035350353,0.238191401330745,0,0,0.107407020119075,0.236351793317782,0.140847188566632,-0.0788315948399074,0,0,0,0,0,0,0.131225716049621,-0.0631889439166442,0.0605456219163789,0,0,0.557664898603858,0.377025398968837,0 | |repeat_enrich_byfamily=-0.0354973027683022,0,0,0,0,0,0.206471895496942,0,0,0,0,-0.0843392403965415,0,0,0,0,0,0,0.0555969339203949,0,0,0,0,0,0,0,0,0,0,0,0,0.416929868811959,-0.558422792324031,0,0,0,0,0.041140765924383,-0.178293872027852,0.208018178957679,0.0191618416807156,0.444018987541094,0.371540395990803,0.317069529519254,0,0.0620577069359474,0,0,0,0,0,0,0,0,0.0620577069359474,-0.0660055475634404,0,0,0,0,0.0192107518530726,0,0.0310288534679737,0,0,0,-0.0619709369809365,-0.310650657339386,0.295728342864667,-0.0890592743848848,0,-0.015950893816004,0.149797035350353,0.238191401330745,0,0,0.107407020119075,0.236351793317782,0.140847188566632,-0.0788315948399074,0,0,0,0,0,0,0.131225716049621,-0.0631889439166442,0.0605456219163789,0,0,0.557664898603858,0.377025398968837,0 | ||
Line 83: | Line 97: | ||
|top_motifs=REST:2.79022320535;ZBTB6:2.75645727888;MTF1:2.74894616104;HAND1,2:2.32277866445;MYFfamily:2.32031364292;POU6F1:2.29606180865;KLF4:2.25762578795;MED-1{core}:2.21944248001;ZFP161:2.21666926598;EGR1..3:2.21451895639;TFAP2B:2.20430096889;LMO2:2.18571710212;ATF2:2.10676240667;UFEwm:2.0695335349;NHLH1,2:2.06370593284;HIC1:2.05095860891;EVI1:2.0403742895;PAX6:2.01853556764;ZIC1..3:2.00174665381;AHR_ARNT_ARNT2:1.8937151267;OCT4_SOX2{dimer}:1.8773812321;PAX5:1.79573110646;MTE{core}:1.79052308976;FOXD3:1.77966870518;BREu{core}:1.77672486205;MAFB:1.76901605366;RORA:1.75396445177;PBX1:1.74181576881;JUN:1.63717264758;CUX2:1.53926049272;NFIL3:1.5024092922;PRDM1:1.48743366239;GTF2I:1.44923012108;RBPJ:1.44307789959;GATA4:1.42835620173;FOXM1:1.4277457772;CREB1:1.42487178087;PRRX1,2:1.4124329799;TFDP1:1.37681131098;NRF1:1.37238823179;POU3F1..4:1.36475079093;DBP:1.36455857105;RFX1:1.34710776986;NKX2-2,8:1.32386146575;FOX{I1,J2}:1.31587711904;TGIF1:1.28858537837;PAX4:1.28797021898;HMGA1,2:1.22518637647;ARID5B:1.21564517332;ADNP_IRX_SIX_ZHX:1.20979932245;SMAD1..7,9:1.18152319326;GFI1B:1.16058915364;HBP1_HMGB_SSRP1_UBTF:1.15568278933;ZNF143:1.13713318309;TFAP2{A,C}:1.11796751805;FOXP3:1.0946073963;SREBF1,2:1.08142288008;MZF1:1.07275854763;CDC5L:1.06838699849;ATF5_CREB3:1.04007934151;IKZF1:1.03130694522;PATZ1:1.02993846774;MYOD1:1.01282423029;NANOG:0.944390457717;STAT1,3:0.925566733657;SOX2:0.920812193996;ONECUT1,2:0.87674883031;NR3C1:0.865104371231;HSF1,2:0.857146430424;NFE2L2:0.846606100671;FOXN1:0.842615003218;RFX2..5_RFXANK_RFXAP:0.814949000073;ZEB1:0.810664665142;NFE2:0.804644239691;AIRE:0.799659876876;RREB1:0.795852895267;GTF2A1,2:0.785374204558;HMX1:0.779734615971;PPARG:0.775872627253;NKX3-2:0.757829620713;SPZ1:0.743293078056;TEF:0.743084319188;ZNF423:0.736984814765;PAX2:0.657505660791;HES1:0.65646941833;ALX1:0.652088635435;FOXQ1:0.626517156611;MAZ:0.626149292956;HOXA9_MEIS1:0.590471554757;SOX5:0.583778199964;YY1:0.556766774784;SOX{8,9,10}:0.511580727538;TFAP4:0.498763209999;NR5A1,2:0.460331968944;EBF1:0.424132498663;POU5F1:0.403286957204;FOX{F1,F2,J1}:0.391491323821;LHX3,4:0.370451211221;GZF1:0.35270540034;PAX8:0.286247493653;TBX4,5:0.273034822777;VSX1,2:0.254513918796;NKX6-1,2:0.235218588654;ESRRA:0.22457802358;GLI1..3:0.214587357914;LEF1_TCF7_TCF7L1,2:0.13823443471;SP1:0.127139491025;SOX17:0.118940642933;NR1H4:0.115187433601;ZNF384:0.0319166707482;ATF4:0.0244382065985;NFE2L1:0.00272895393563;TFCP2:-0.00786608486715;MYBL2:-0.0117081071982;GCM1,2:-0.055567441221;bHLH_family:-0.130761251434;NKX2-3_NKX2-5:-0.161716816766;SNAI1..3:-0.167981663837;NKX2-1,4:-0.178194226766;POU1F1:-0.181953596611;PDX1:-0.211600598785;NFATC1..3:-0.227517612873;HIF1A:-0.232422320336;PAX1,9:-0.271179011314;CRX:-0.30016517695;BPTF:-0.31440006008;NKX3-1:-0.339761546168;TLX1..3_NFIC{dimer}:-0.343058766403;HLF:-0.348988101708;AR:-0.350744518873;XCPE1{core}:-0.357177281532;ZBTB16:-0.358621974091;FOXA2:-0.36168305884;HOX{A4,D4}:-0.413239964823;MEF2{A,B,C,D}:-0.416464785163;NANOG{mouse}:-0.419268958609;TAL1_TCF{3,4,12}:-0.421134606072;TP53:-0.440842451883;RXR{A,B,G}:-0.45469833697;CDX1,2,4:-0.461765507911;ZNF148:-0.482803485132;EN1,2:-0.493925052119;EP300:-0.50034431199;TOPORS:-0.566455996165;HOX{A5,B5}:-0.572847661609;NFY{A,B,C}:-0.58042288896;ATF6:-0.616632179789;SPI1:-0.633838841088;FOSL2:-0.638503418857;ELK1,4_GABP{A,B1}:-0.650234751703;IKZF2:-0.663885794705;STAT2,4,6:-0.665587989664;MYB:-0.684749019143;HNF4A_NR2F1,2:-0.721115981272;ZNF238:-0.748979775793;ESR1:-0.779377716784;T:-0.810646489123;BACH2:-0.814740146346;FOXL1:-0.829574298987;FOXO1,3,4:-0.837607408292;GATA6:-0.864886859083;POU2F1..3:-0.883769424351;HNF1A:-0.884905063385;RUNX1..3:-0.891122304635;CEBPA,B_DDIT3:-0.899739296262;NFIX:-1.01182383384;FOS_FOS{B,L1}_JUN{B,D}:-1.02619380628;STAT5{A,B}:-1.03206693599;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.03968579883;ALX4:-1.07579175025;FOX{D1,D2}:-1.09672794316;IRF1,2:-1.1375587602;TEAD1:-1.13999972705;NFKB1_REL_RELA:-1.14679788271;DMAP1_NCOR{1,2}_SMARC:-1.15109395243;IRF7:-1.17043847159;ETS1,2:-1.24607715917;FOXP1:-1.28363796852;NR6A1:-1.30408059951;ELF1,2,4:-1.33619874211;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.58195605269;SPIB:-1.58649057779;TBP:-1.67558096402;RXRA_VDR{dimer}:-1.68658383462;E2F1..5:-1.71345062585;GFI1:-1.8321427635;SRF:-1.94066607851;TLX2:-1.96635238321;PITX1..3:-2.10611627389 | |top_motifs=REST:2.79022320535;ZBTB6:2.75645727888;MTF1:2.74894616104;HAND1,2:2.32277866445;MYFfamily:2.32031364292;POU6F1:2.29606180865;KLF4:2.25762578795;MED-1{core}:2.21944248001;ZFP161:2.21666926598;EGR1..3:2.21451895639;TFAP2B:2.20430096889;LMO2:2.18571710212;ATF2:2.10676240667;UFEwm:2.0695335349;NHLH1,2:2.06370593284;HIC1:2.05095860891;EVI1:2.0403742895;PAX6:2.01853556764;ZIC1..3:2.00174665381;AHR_ARNT_ARNT2:1.8937151267;OCT4_SOX2{dimer}:1.8773812321;PAX5:1.79573110646;MTE{core}:1.79052308976;FOXD3:1.77966870518;BREu{core}:1.77672486205;MAFB:1.76901605366;RORA:1.75396445177;PBX1:1.74181576881;JUN:1.63717264758;CUX2:1.53926049272;NFIL3:1.5024092922;PRDM1:1.48743366239;GTF2I:1.44923012108;RBPJ:1.44307789959;GATA4:1.42835620173;FOXM1:1.4277457772;CREB1:1.42487178087;PRRX1,2:1.4124329799;TFDP1:1.37681131098;NRF1:1.37238823179;POU3F1..4:1.36475079093;DBP:1.36455857105;RFX1:1.34710776986;NKX2-2,8:1.32386146575;FOX{I1,J2}:1.31587711904;TGIF1:1.28858537837;PAX4:1.28797021898;HMGA1,2:1.22518637647;ARID5B:1.21564517332;ADNP_IRX_SIX_ZHX:1.20979932245;SMAD1..7,9:1.18152319326;GFI1B:1.16058915364;HBP1_HMGB_SSRP1_UBTF:1.15568278933;ZNF143:1.13713318309;TFAP2{A,C}:1.11796751805;FOXP3:1.0946073963;SREBF1,2:1.08142288008;MZF1:1.07275854763;CDC5L:1.06838699849;ATF5_CREB3:1.04007934151;IKZF1:1.03130694522;PATZ1:1.02993846774;MYOD1:1.01282423029;NANOG:0.944390457717;STAT1,3:0.925566733657;SOX2:0.920812193996;ONECUT1,2:0.87674883031;NR3C1:0.865104371231;HSF1,2:0.857146430424;NFE2L2:0.846606100671;FOXN1:0.842615003218;RFX2..5_RFXANK_RFXAP:0.814949000073;ZEB1:0.810664665142;NFE2:0.804644239691;AIRE:0.799659876876;RREB1:0.795852895267;GTF2A1,2:0.785374204558;HMX1:0.779734615971;PPARG:0.775872627253;NKX3-2:0.757829620713;SPZ1:0.743293078056;TEF:0.743084319188;ZNF423:0.736984814765;PAX2:0.657505660791;HES1:0.65646941833;ALX1:0.652088635435;FOXQ1:0.626517156611;MAZ:0.626149292956;HOXA9_MEIS1:0.590471554757;SOX5:0.583778199964;YY1:0.556766774784;SOX{8,9,10}:0.511580727538;TFAP4:0.498763209999;NR5A1,2:0.460331968944;EBF1:0.424132498663;POU5F1:0.403286957204;FOX{F1,F2,J1}:0.391491323821;LHX3,4:0.370451211221;GZF1:0.35270540034;PAX8:0.286247493653;TBX4,5:0.273034822777;VSX1,2:0.254513918796;NKX6-1,2:0.235218588654;ESRRA:0.22457802358;GLI1..3:0.214587357914;LEF1_TCF7_TCF7L1,2:0.13823443471;SP1:0.127139491025;SOX17:0.118940642933;NR1H4:0.115187433601;ZNF384:0.0319166707482;ATF4:0.0244382065985;NFE2L1:0.00272895393563;TFCP2:-0.00786608486715;MYBL2:-0.0117081071982;GCM1,2:-0.055567441221;bHLH_family:-0.130761251434;NKX2-3_NKX2-5:-0.161716816766;SNAI1..3:-0.167981663837;NKX2-1,4:-0.178194226766;POU1F1:-0.181953596611;PDX1:-0.211600598785;NFATC1..3:-0.227517612873;HIF1A:-0.232422320336;PAX1,9:-0.271179011314;CRX:-0.30016517695;BPTF:-0.31440006008;NKX3-1:-0.339761546168;TLX1..3_NFIC{dimer}:-0.343058766403;HLF:-0.348988101708;AR:-0.350744518873;XCPE1{core}:-0.357177281532;ZBTB16:-0.358621974091;FOXA2:-0.36168305884;HOX{A4,D4}:-0.413239964823;MEF2{A,B,C,D}:-0.416464785163;NANOG{mouse}:-0.419268958609;TAL1_TCF{3,4,12}:-0.421134606072;TP53:-0.440842451883;RXR{A,B,G}:-0.45469833697;CDX1,2,4:-0.461765507911;ZNF148:-0.482803485132;EN1,2:-0.493925052119;EP300:-0.50034431199;TOPORS:-0.566455996165;HOX{A5,B5}:-0.572847661609;NFY{A,B,C}:-0.58042288896;ATF6:-0.616632179789;SPI1:-0.633838841088;FOSL2:-0.638503418857;ELK1,4_GABP{A,B1}:-0.650234751703;IKZF2:-0.663885794705;STAT2,4,6:-0.665587989664;MYB:-0.684749019143;HNF4A_NR2F1,2:-0.721115981272;ZNF238:-0.748979775793;ESR1:-0.779377716784;T:-0.810646489123;BACH2:-0.814740146346;FOXL1:-0.829574298987;FOXO1,3,4:-0.837607408292;GATA6:-0.864886859083;POU2F1..3:-0.883769424351;HNF1A:-0.884905063385;RUNX1..3:-0.891122304635;CEBPA,B_DDIT3:-0.899739296262;NFIX:-1.01182383384;FOS_FOS{B,L1}_JUN{B,D}:-1.02619380628;STAT5{A,B}:-1.03206693599;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.03968579883;ALX4:-1.07579175025;FOX{D1,D2}:-1.09672794316;IRF1,2:-1.1375587602;TEAD1:-1.13999972705;NFKB1_REL_RELA:-1.14679788271;DMAP1_NCOR{1,2}_SMARC:-1.15109395243;IRF7:-1.17043847159;ETS1,2:-1.24607715917;FOXP1:-1.28363796852;NR6A1:-1.30408059951;ELF1,2,4:-1.33619874211;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.58195605269;SPIB:-1.58649057779;TBP:-1.67558096402;RXRA_VDR{dimer}:-1.68658383462;E2F1..5:-1.71345062585;GFI1:-1.8321427635;SRF:-1.94066607851;TLX2:-1.96635238321;PITX1..3:-2.10611627389 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:11645-122D7;search_select_hide=table117:11645-122D7 | |||
}} | }} |
Latest revision as of 18:13, 4 June 2020
Name: | Mouse Neurons - raphe, donor3 |
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Species: | Mouse (Mus musculus) |
Library ID: | CNhs12619 |
Sample type: | primary cells |
Genomic View: | UCSC |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
CNhs12619
0 | 0 |
1 | 0.772 |
10 | 0 |
100 | 0 |
1000 | 0 |
1001 | 0.161 |
1002 | -0.0851 |
1003 | 0.0905 |
1004 | 0 |
1005 | 0 |
1006 | 0.728 |
1007 | -0.116 |
1008 | 0 |
1009 | -0.0737 |
101 | -0.129 |
1010 | 0 |
1011 | 0.346 |
1012 | 0.15 |
1013 | 0.181 |
1014 | -0.0309 |
1015 | -0.135 |
1016 | 0.0128 |
1017 | 0 |
1018 | 0 |
1019 | 0 |
102 | 0 |
1020 | 0.558 |
1021 | 0 |
1022 | 0.00628 |
1023 | 0 |
1024 | -0.0232 |
1025 | -0.0611 |
1026 | 0 |
1027 | 0.337 |
1028 | 0 |
1029 | -0.0596 |
103 | -0.0861 |
1030 | 0 |
1031 | -0.505 |
1032 | 0.504 |
1033 | 0.0498 |
1034 | 0 |
1035 | 0.0621 |
1036 | -0.172 |
1037 | 0 |
1038 | -0.0146 |
1039 | 0.0952 |
104 | 0 |
1040 | -0.121 |
1041 | 0 |
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12619
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12619
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.24 |
10 | 10 | 0.0464 |
100 | 100 | 0.287 |
101 | 101 | 0.89 |
102 | 102 | 0.877 |
103 | 103 | 0.0902 |
104 | 104 | 0.91 |
105 | 105 | 0.446 |
106 | 106 | 0.034 |
107 | 107 | 0.115 |
108 | 108 | 0.496 |
109 | 109 | 0.00809 |
11 | 11 | 0.108 |
110 | 110 | 0.0536 |
111 | 111 | 0.311 |
112 | 112 | 0.0139 |
113 | 113 | 0.607 |
114 | 114 | 0.608 |
115 | 115 | 0.904 |
116 | 116 | 0.396 |
117 | 117 | 0.00546 |
118 | 118 | 0.587 |
119 | 119 | 0.159 |
12 | 12 | 0.863 |
120 | 120 | 0.63 |
121 | 121 | 0.415 |
122 | 122 | 0.988 |
123 | 123 | 1.22443e-4 |
124 | 124 | 0.0994 |
125 | 125 | 0.168 |
126 | 126 | 0.0484 |
127 | 127 | 0.438 |
128 | 128 | 0.04 |
129 | 129 | 0.28 |
13 | 13 | 1.15308e-7 |
130 | 130 | 0.122 |
131 | 131 | 0.314 |
132 | 132 | 0.729 |
133 | 133 | 0.756 |
134 | 134 | 0.0832 |
135 | 135 | 0.199 |
136 | 136 | 0.168 |
137 | 137 | 0.706 |
138 | 138 | 0.59 |
139 | 139 | 0.297 |
14 | 14 | 0.873 |
140 | 140 | 0.269 |
141 | 141 | 0.828 |
142 | 142 | 0.695 |
143 | 143 | 0.349 |
144 | 144 | 0.635 |
145 | 145 | 1.64637e-4 |
146 | 146 | 0.248 |
147 | 147 | 0.282 |
148 | 148 | 0.933 |
149 | 149 | 0.909 |
15 | 15 | 0.199 |
150 | 150 | 0.0661 |
151 | 151 | 0.836 |
152 | 152 | 0.118 |
153 | 153 | 0.463 |
154 | 154 | 0.633 |
155 | 155 | 0.458 |
156 | 156 | 0.00432 |
157 | 157 | 0.0917 |
158 | 158 | 0.173 |
159 | 159 | 0.702 |
160 | 160 | 0.281 |
161 | 161 | 0.225 |
162 | 162 | 0.762 |
163 | 163 | 0.806 |
164 | 164 | 0.0402 |
165 | 165 | 0.255 |
166 | 166 | 0.514 |
167 | 167 | 0.528 |
168 | 168 | 0.553 |
169 | 169 | 0.00265 |
17 | 17 | 0.0697 |
18 | 18 | 0.752 |
19 | 19 | 0.0988 |
2 | 2 | 0.62 |
20 | 20 | 0.0295 |
21 | 21 | 0.184 |
22 | 22 | 0.13 |
23 | 23 | 0.646 |
24 | 24 | 0.057 |
25 | 25 | 0.817 |
26 | 26 | 2.06561e-8 |
27 | 27 | 0.377 |
28 | 28 | 0.83 |
29 | 29 | 0.0439 |
3 | 3 | 0.0792 |
30 | 30 | 0.805 |
31 | 31 | 0.7 |
32 | 32 | 0.655 |
33 | 33 | 0.094 |
34 | 34 | 0.743 |
35 | 35 | 0.659 |
36 | 36 | 0.131 |
37 | 37 | 0.04 |
38 | 38 | 0.425 |
39 | 39 | 0.381 |
4 | 4 | 0.304 |
40 | 40 | 0.0717 |
41 | 41 | 0.585 |
42 | 42 | 0.165 |
43 | 43 | 0.119 |
44 | 44 | 0.812 |
45 | 45 | 0.648 |
46 | 46 | 0.0493 |
47 | 47 | 0.401 |
48 | 48 | 0.315 |
49 | 49 | 0.135 |
5 | 5 | 0.169 |
50 | 50 | 0.234 |
51 | 51 | 0.782 |
52 | 52 | 0.272 |
53 | 53 | 0.562 |
54 | 54 | 0.97 |
55 | 55 | 0.996 |
56 | 56 | 0.459 |
57 | 57 | 0.54 |
58 | 58 | 0.299 |
59 | 59 | 0.183 |
6 | 6 | 0.928 |
60 | 60 | 0.0385 |
61 | 61 | 0.0501 |
62 | 62 | 0.206 |
63 | 63 | 0.142 |
64 | 64 | 0.721 |
65 | 65 | 0.374 |
66 | 66 | 0.726 |
67 | 67 | 0.716 |
68 | 68 | 0.973 |
69 | 69 | 0.506 |
7 | 7 | 0.0143 |
70 | 70 | 0.0896 |
71 | 71 | 0.00281 |
72 | 72 | 0.582 |
73 | 73 | 0.0506 |
74 | 74 | 0.912 |
75 | 75 | 0.0593 |
76 | 76 | 0.31 |
77 | 77 | 0.573 |
78 | 78 | 0.00267 |
79 | 79 | 0.0712 |
8 | 8 | 0.0674 |
80 | 80 | 0.738 |
81 | 81 | 0.739 |
82 | 82 | 0.283 |
83 | 83 | 0.163 |
84 | 84 | 0.593 |
85 | 85 | 0.196 |
86 | 86 | 0.147 |
87 | 87 | 0.398 |
88 | 88 | 0.862 |
89 | 89 | 0.584 |
9 | 9 | 0.376 |
90 | 90 | 0.145 |
91 | 91 | 0.089 |
92 | 92 | 0.387 |
93 | 93 | 0.0598 |
94 | 94 | 0.713 |
95 | 95 | 0.0612 |
96 | 96 | 0.275 |
97 | 97 | 0.764 |
98 | 98 | 0.743 |
99 | 99 | 0.409 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12619
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000540 (neuron)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0002319 (neural cell)
0000117 (CNS neuron (sensu Vertebrata))
0000393 (electrically responsive cell)
0000211 (electrically active cell)
0000404 (electrically signaling cell)
0000255 (eukaryotic cell)
0002610 (raphe nuclei neuron)
UBERON: Anatomy
0000468 (multi-cellular organism)
0004121 (ectoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0004684 (raphe nuclei)
0001016 (nervous system)
0002275 (reticular formation)
FF: FANTOM5
0000102 (sample by type)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000203 (mouse neuron samples)
0000205 (mouse raphe nuclei neuron sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000337 (neuroblast (sensu Vertebrata))
CL:0000031 (neuroblast)
CL:0000221 (ectodermal cell)