FF:12128-128D4: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00004862 | |||
|accession_numbers=CAGE;DRX008781;DRR009653;DRZ001078;DRZ002463;DRZ012428;DRZ013813 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002032,CL:0002371,CL:0000255,CL:0000049 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002032,CL:0002371,CL:0000255,CL:0000049 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr7:19895354..19895369,-!p1@Fosb!2.30!268.88!Fosb;;chr7:19895384..19895399,-!p2@Fosb!2.21!223.64!Fosb;;chr11:16908650..16908690,-!p1@Plek!1.83!390.23!Plek;;chr1:193007123..193007139,-!p1@Atf3!1.69!254.27!Atf3;;chr1:38721792..38721845,-!p1@Aff3!1.55!42.70!Aff3;;chr16:92826249..92826325,-!p1@Runx1!1.54!80.69!Runx1;;chr2:90936978..90937023,+!p3@Sfpi1!1.53!60.87!Sfpi1;;chr2:90936901..90936945,+!p1@Sfpi1!1.49!150.83!Sfpi1;;chr14:79915521..79915539,+!p5@Elf1!1.44!31.64!Elf1;;chr15:101097270..101097290,+!p1@Nr4a1!1.43!257.70!Nr4a1;;chr11:11586218..11586285,+!p1@Ikzf1!1.43!80.56!Ikzf1;;chr16:55966492..55966517,+!p2@Rpl24,p2@Zbtb11!1.42!31.89!Zbtb11;;chr2:90936947..90936977,+!p2@Sfpi1!1.41!47.65!Sfpi1;;chr4:124805061..124805087,-!p1@Zc3h12a!1.40!72.81!Zc3h12a;;chr12:86814833..86814846,+!p1@Fos!1.39!529.12!Fos;;chr10:20880629..20880683,-!p1@Myb!1.39!66.97!Myb;;chr7:31206743..31206761,+!p1@Nfkbid!1.39!32.28!Nfkbid;;chr5:92391466..92391471,+!p2@Thap6!1.36!31.77!Thap6;;chr8:87502608..87502623,-!p1@Junb!1.35!331.91!Junb;;chr15:103085802..103085817,-!p4@Nfe2!1.34!25.80!Nfe2;;chr8:123260252..123260264,+!p1@Irf8!1.31!132.79!Irf8;;chr14:79915502..79915514,+!p4@Elf1!1.30!28.72!Elf1;;chr4:134708451..134708469,+!p1@Runx3!1.27!31.13!Runx3;;chr16:55838757..55838774,-!p2@Nfkbiz!1.23!18.93!Nfkbiz;;chr14:79915425..79915501,+!p1@Elf1!1.21!132.92!Elf1;;chr6:16848347..16848391,-!p1@Tfec!1.18!18.43!Tfec;;chr4:94718861..94718872,-!p2@Jun!1.16!101.27!Jun;;chr2:90922554..90922575,+!p4@Sfpi1!1.16!24.65!Sfpi1;;chr10:20880731..20880775,-!p2@Myb!1.15!27.32!Myb;;chr17:27693922..27693934,+!p10@Hmga1-rs1,p11@Hmga1!1.15!17.15!Hmga1;;chr1:52065454..52065495,+!p1@Stat4!1.14!21.22!Stat4;;chrX:137077608..137077619,-!p6@Tsc22d3!1.13!16.77!Tsc22d3;;chr11:23670750..23670789,-!p2@Rel!1.12!23.25!Rel;;chr10:20880698..20880717,-!p3@Myb!1.08!17.54!Myb;;chr12:56593574..56593592,-!p1@Nfkbia!1.07!557.84!Nfkbia;;chr8:87225329..87225396,+!p1@Lyl1!1.07!41.30!Lyl1;;chr5:140267510..140267555,+!p2@Mafk!1.06!24.78!Mafk;;chr3:135271185..135271254,-!p4@Nfkb1!1.06!19.44!Nfkb1;;chr8:74842952..74842970,+!p1@Klf2!1.05!696.60!Klf2;;chr13:5860776..5860796,+!p1@Klf6!1.05!245.88!Klf6;;chr17:44872561..44872615,-!p1@Runx2!1.05!23.51!Runx2;;chrX:137077653..137077669,-!p3@Tsc22d3!1.03!44.60!Tsc22d3;;chr13:83663902..83663927,+!p1@Mef2c!1.02!231.01!Mef2c;;chr19:37509324..37509337,+!p1@Hhex!1.02!67.98!Hhex;;chr11:23670953..23671028,-!p1@Rel!1.02!54.39!Rel;;chr6:52176164..52176195,-!p1@Hoxa9!1.02!11.82!Hoxa9;;chr17:27693887..27693908,+!p2@Hmga1-rs1,p2@Hmga1!1.00!66.58!Hmga1;;chr19:5447692..5447711,+!p2@Fosl1!1.00!9.02!Fosl1;;chr7:19895546..19895577,-!p3@Fosb!1.00!8.89!Fosb;;chr10:126727842..126727859,+!p1@Ddit3!0.99!257.83!Ddit3;;chr11:100683839..100683890,-!p2@Stat5b!0.99!20.84!Stat5b;;chr4:55545337..55545357,-!p1@Klf4!0.98!128.09!Klf4;;chr6:16848395..16848416,-!p2@Tfec!0.98!10.04!Tfec;;chr4:94718879..94718898,-!p1@Jun!0.97!621.37!Jun;;chr14:32979290..32979309,+!p3@Gm6768,p3@Ncoa4!0.96!9.66!Ncoa4;;chr17:45692676..45692695,+!p2@Nfkbie!0.95!16.26!Nfkbie;;chr17:44873258..44873281,-!p5@Runx2!0.95!10.55!Runx2;;chr16:3744162..3744180,+!p2@Zfp263!0.94!21.60!Zfp263;;chr1:36364590..36364608,+!p1@Arid5a!0.93!79.16!Arid5a;;chr16:55822241..55822258,-!p1@Nfkbiz!0.92!238.64!Nfkbiz;;chr13:83663868..83663894,+!p2@Mef2c!0.92!109.92!Mef2c;;chr19:5447886..5447905,+!p1@Fosl1!0.92!7.37!Fosl1;;chr19:46379199..46379301,+!p1@Nfkb2!0.91!42.44!Nfkb2;;chr4:124805092..124805135,-!p2@Zc3h12a!0.91!31.64!Zc3h12a;;chr2:56967334..56967366,-!p1@Nr4a2!0.91!14.99!Nr4a2;;chr5:22940353..22940372,+!p3@Mll5!0.91!14.23!Mll5;;chr2:90922519..90922544,+!p6@Sfpi1!0.91!8.01!Sfpi1;;chr9:32348943..32349001,-!p1@Fli1!0.90!58.83!Fli1;;chr6:99216488..99216534,-!p2@Foxp1!0.90!20.71!Foxp1;;chr17:45692642..45692663,+!p1@Nfkbie!0.87!21.73!Nfkbie;;chr13:5860872..5860883,+!p3@Klf6!0.87!13.34!Klf6;;chr3:135354384..135354443,-!p1@Nfkb1!0.86!40.28!Nfkb1;;chr15:25914114..25914128,+!p2@Zfp622!0.85!26.05!Zfp622;;chr15:103085660..103085681,-!p1@Nfe2!0.85!9.28!Nfe2;;chr13:59923965..59924003,-!p2@Zcchc6!0.85!7.37!Zcchc6;;chr6:28347999..28348023,-!p3@Zfp800!0.85!6.10!Zfp800;;chr13:64254457..64254497,-!p1@Zfp367!0.83!27.45!Zfp367;;chr15:38230415..38230426,-!p2@Klf10!0.83!21.47!Klf10;;chr8:87225670..87225697,+!p2@Lyl1!0.83!17.79!Lyl1;;chrX:137077636..137077647,-!p7@Tsc22d3!0.83!7.12!Tsc22d3;;chr16:92826232..92826245,-!p4@Runx1!0.83!5.72!Runx1;;chr19:12871064..12871095,-!p2@Zfp91!0.83!5.72!Zfp91;;chr2:44968512..44968530,-!p1@Zeb2!0.82!133.17!Zeb2;;chr19:5637528..5637548,+!p2@Rela!0.82!35.33!Rela;;chr13:64254437..64254453,-!p4@Zfp367!0.82!7.88!Zfp367;;chr15:80085920..80085941,+!p1@Atf4!0.80!656.57!Atf4;;chr6:52176144..52176161,-!p2@Hoxa9!0.80!5.34!Hoxa9;;chr12:87027598..87027652,+!p1@Batf!0.79!12.45!Batf;;chr16:92697560..92697592,-!p2@Runx1!0.78!34.69!Runx1;;chr4:48058129..48058179,+!p2@Nr4a3!0.78!10.04!Nr4a3;;chrX:137077682..137077692,-!p5@Tsc22d3!0.78!8.39!Tsc22d3;;chr17:84586544..84586592,-!p3@Zfp36l2!0.78!7.24!Zfp36l2;;ch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pors;;chr16:55966451..55966484,+!p3@Rpl24,p3@Zbtb11!0.41!13.34!Zbtb11;;chr8:72520162..72520197,-!p4@Gatad2a!0.41!11.56!Gatad2a;;chr15:50721515..50721540,-!p3@Trps1!0.41!6.23!Trps1;;chr19:46380235..46380277,+!p3@Nfkb2!0.41!4.32!Nfkb2;;chr3:135354349..135354371,-!p6@Nfkb1!0.41!4.07!Nfkb1;;chr5:147760297..147760304,+!p4@Gtf3a!0.41!3.56!Gtf3a;;chr11:11590140..11590187,+!p3@Ikzf1!0.41!2.03!Ikzf1;;chr5:104183579..104183600,+!p9@Aff1!0.41!1.91!Aff1;;chr6:88148650..88148669,+!p1@Gata2!0.40!18.55!Gata2;;chr2:126501197..126501245,-!p1@Gabpb1!0.40!16.90!Gabpb1;;chr16:55973950..55973977,+!p4@Rpl24,p4@Zbtb11!0.40!10.04!Zbtb11;;chr5:104121453..104121479,+!p4@Aff1!0.40!9.91!Aff1;;chr8:72520139..72520157,-!p6@Gatad2a!0.40!8.39!Gatad2a;;chr1:133904217..133904250,+!p5@Elk4!0.40!6.73!Elk4;;chr17:71202822..71202877,-!p3@Tgif1!0.40!5.97!Tgif1;;chr17:27693706..27693724,+!p4@Hmga1,p5@Hmga1-rs1!0.40!4.96!Hmga1;;chr17:4994491..4994531,+!p6@Arid1b!0.40!3.94!Arid1b;;chr1:133904862..133904893,+!p6@Elk4!0.40!3.94!Elk4;;chr5:108494765..108494786,+!p2@Mtf2!0.40!2.29!Mtf2;;chr17:51971960..51971979,-!p1@Satb1!0.40!2.29!Satb1;;chr18:3281725..3281740,-!p3@Crem!0.40!2.16!Crem;;chr14:47896863..47896886,-!p5@Wdhd1!0.40!1.65!Wdhd1;;chr14:98568502..98568516,-!p7@Dach1!0.40!1.52!Dach1;;chr11:23670827..23670846,-!p3@Rel!0.40!1.52!Rel;;chr11:23671279..23671293,-!p8@Rel!0.40!1.52!Rel;;chr16:55838779..55838788,-!p9@Nfkbiz!0.40!1.52!Nfkbiz;;chr5:21290933..21291050,-!p1@Dnajc2!0.39!82.72!Dnajc2;;chr9:20757246..20757278,-!p1@Dnmt1!0.39!64.55!Dnmt1;;chr4:116480137..116480178,-!p1@Toe1!0.39!24.14!Toe1;;chr8:72356532..72356611,+!p1@Pbx4!0.39!8.51!Pbx4;;chr16:3872255..3872283,-!p4@Zfp597!0.39!2.54!Zfp597;;chr13:83663546..83663560,+!p4@Mef2c!0.39!2.16!Mef2c;;chr19:23215673..23215753,+!p1@Klf9!0.38!30.88!Klf9;;chr10:82226781..82226825,-!p1@Nfyb!0.38!26.68!Nfyb;;chr14:47896467..47896523,-!p1@Wdhd1!0.38!25.67!Wdhd1;;chr11:101413151..101413207,-!p1@Brca1!0.38!20.46!Brca1;;chr6:124959016..124959061,+!p3@Zfp384!0.38!5.08!Zfp384;;chr1:95651346..95651383,-!p3@Thap4!0.38!4.45!Thap4;;chr3:90097275..90097302,+!p2@Gatad2b!0.38!4.32!Gatad2b;;chr16:55822638..55822669,-!p3@Nfkbiz!0.38!2.54!Nfkbiz;;chr3:133207214..133207228,-!p2@Tet2!0.38!1.91!Tet2;;chr10:20881176..20881191,-!p6@Myb!0.38!1.40!Myb;;chr2:83484721..83484734,+!p3@Zc3h15!0.37!24.52!Zc3h15;;chr3:135354289..135354334,-!p3@Nfkb1!0.37!10.29!Nfkb1;;chr2:72818978..72818997,-!p4@Sp3!0.37!8.64!Sp3;;chr6:131338278..131338362,-!p2@Csda!0.37!5.59!Csda;;chr16:55966407..55966447,+!p6@Rpl24,p6@Zbtb11!0.37!4.45!Zbtb11;;chr4:151235776..151235788,-!p5@Camta1!0.37!2.92!Camta1;;chr6:98978868..98978918,-!p6@Foxp1!0.37!2.92!Foxp1;;chr16:92697354..92697362,-!p3@Runx1!0.37!2.54!Runx1;;chr19:5423800..5423821,-!p5@Drap1!0.37!2.41!Drap1;;chr5:104182694..104182724,+!p8@Aff1!0.37!1.91!Aff1;;chr15:36937137..36937157,-!p2@Gm10193,p2@Zfp706!0.36!63.66!Zfp706;;chr15:81702313..81702346,-!p1@Phf5a!0.36!62.65!Phf5a;;chr1:173341474..173341513,+!p2@Usf1!0.36!27.70!Usf1;;chr7:134169762..134169795,-!p3@Maz!0.36!18.30!Maz;;chr5:125538737..125538781,-!p2@Ncor2!0.36!6.86!Ncor2;;chr18:3337339..3337397,-!p5@Crem!0.36!3.43!Crem;;chr13:29045321..29045337,-!p2@Sox4!0.36!2.03!Sox4;;chr16:55973994..55974005,+!p8@Rpl24,p8@Zbtb11!0.36!1.78!Zbtb11;;chr19:37511111..37511115,+!p2@Hhex!0.36!1.27!Hhex;;chr17:44873311..44873322,-!p13@Runx2!0.36!1.27!Runx2;;chr5:92391970..92391984,+!p5@Thap6!0.36!1.27!Thap6;;chr6:16848443..16848459,-!p3@Tfec!0.36!1.27!Tfec;;chr1:87495371..87495397,-!p1@Sp110!0.36!1.27!Sp110;;chr15:103085821..103085828,-!p6@Nfe2!0.36!1.27!Nfe2;;chr10:20881160..20881175,-!p4@Myb!0.36!1.27!Myb;;chr11:62272200..62272221,-!p11@Ncor1!0.36!1.27!Ncor1;;chr8:108582687..108582734,+!p4@Nfatc3!0.36!1.27!Nfatc3;;chr1:93309740..93309811,-!p1@Hes6!0.35!40.54!Hes6;;chr11:69393868..69393884,+!p2@Trp53!0.35!27.32!Trp53;;chr17:21625946..21626024,+!p1@Zfp53!0.35!21.73!Zfp53;;chr15:61816932..61816952,+!p2@Myc!0.35!16.26!Myc;;chr16:4559608..4559681,-!p1@Tfap4!0.35!16.01!Tfap4;;chr4:133801494..133801519,-!p2@Zfp593!0.35!13.85!Zfp593;;chr7:49761065..49761106,-!p1@ENSMUST00000174407,p1@uc009gmb.1!0.35!10.42!Zfp141;;chr16:87699206..87699229,+!p3@Bach1!0.35!10.29!Bach1;;chr6:131338363..131338383,-!p4@Csda!0.35!8.39!Csda;;chrX:45807489..45807502,-!p2@Elf4!0.35!5.59!Elf4;;chr5:147760339..147760350,+!p3@Gtf3a!0.35!5.21!Gtf3a;;chr13:59924173..59924194,-!p4@Zcchc6!0.35!2.80!Zcchc6;;chr7:30638614..30638628,-!p2@Zfp940!0.35!2.41!Zfp940;;chr13:59924319..59924331,-!p5@Zcchc6!0.35!2.16!Zcchc6;;chr12:78063032..78063043,-!p4@Max!0.35!2.03!Max;;chr18:55149778..55149798,-!p11@Zfp608!0.35!2.03!Zfp608;;chr11:120624132..120624143,+!p10@Hmga1,p9@Hmga1-rs1!0.35!1.78!Hmga1;;chr6:108610610..108610676,+!p1@Bhlhe40!0.34!97.21!Bhlhe40;;chr6:86619130..86619158,-!p2@Mxd1!0.34!27.96!Mxd1;;chr2:156665817..156665877,+!p1@Tgif2!0.34!11.94!Tgif2;;chr13:22036953..22037009,+!p1@Zfp184!0.34!4.57!Zfp184;;chr7:50817661..50817687,+!p2@LOC100505180,p2@Zfp658!0.34!3.69!Zfp658;;chr13:44825008..44825066,+!p5@Jarid2!0.34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| |expression_enrichment_score=chr7:19895354..19895369,-!p1@Fosb!2.30!268.88!Fosb;;chr7:19895384..19895399,-!p2@Fosb!2.21!223.64!Fosb;;chr11:16908650..16908690,-!p1@Plek!1.83!390.23!Plek;;chr1:193007123..193007139,-!p1@Atf3!1.69!254.27!Atf3;;chr1:38721792..38721845,-!p1@Aff3!1.55!42.70!Aff3;;chr16:92826249..92826325,-!p1@Runx1!1.54!80.69!Runx1;;chr2:90936978..90937023,+!p3@Sfpi1!1.53!60.87!Sfpi1;;chr2:90936901..90936945,+!p1@Sfpi1!1.49!150.83!Sfpi1;;chr14:79915521..79915539,+!p5@Elf1!1.44!31.64!Elf1;;chr15:101097270..101097290,+!p1@Nr4a1!1.43!257.70!Nr4a1;;chr11:11586218..11586285,+!p1@Ikzf1!1.43!80.56!Ikzf1;;chr16:55966492..55966517,+!p2@Rpl24,p2@Zbtb11!1.42!31.89!Zbtb11;;chr2:90936947..90936977,+!p2@Sfpi1!1.41!47.65!Sfpi1;;chr4:124805061..124805087,-!p1@Zc3h12a!1.40!72.81!Zc3h12a;;chr12:86814833..86814846,+!p1@Fos!1.39!529.12!Fos;;chr10:20880629..20880683,-!p1@Myb!1.39!66.97!Myb;;chr7:31206743..31206761,+!p1@Nfkbid!1.39!32.28!Nfkbid;;chr5:92391466..92391471,+!p2@Thap6!1.36!31.77!Thap6;;chr8:87502608..87502623,-!p1@Junb!1.35!331.91!Junb;;chr15:103085802..103085817,-!p4@Nfe2!1.34!25.80!Nfe2;;chr8:123260252..123260264,+!p1@Irf8!1.31!132.79!Irf8;;chr14:79915502..79915514,+!p4@Elf1!1.30!28.72!Elf1;;chr4:134708451..134708469,+!p1@Runx3!1.27!31.13!Runx3;;chr16:55838757..55838774,-!p2@Nfkbiz!1.23!18.93!Nfkbiz;;chr14:79915425..79915501,+!p1@Elf1!1.21!132.92!Elf1;;chr6:16848347..16848391,-!p1@Tfec!1.18!18.43!Tfec;;chr4:94718861..94718872,-!p2@Jun!1.16!101.27!Jun;;chr2:90922554..90922575,+!p4@Sfpi1!1.16!24.65!Sfpi1;;chr10:20880731..20880775,-!p2@Myb!1.15!27.32!Myb;;chr17:27693922..27693934,+!p10@Hmga1-rs1,p11@Hmga1!1.15!17.15!Hmga1;;chr1:52065454..52065495,+!p1@Stat4!1.14!21.22!Stat4;;chrX:137077608..137077619,-!p6@Tsc22d3!1.13!16.77!Tsc22d3;;chr11:23670750..23670789,-!p2@Rel!1.12!23.25!Rel;;chr10:20880698..20880717,-!p3@Myb!1.08!17.54!Myb;;chr12:56593574..56593592,-!p1@Nfkbia!1.07!557.84!Nfkbia;;chr8:87225329..87225396,+!p1@Lyl1!1.07!41.30!Lyl1;;chr5:140267510..140267555,+!p2@Mafk!1.06!24.78!Mafk;;chr3:135271185..135271254,-!p4@Nfkb1!1.06!19.44!Nfkb1;;chr8:74842952..74842970,+!p1@Klf2!1.05!696.60!Klf2;;chr13:5860776..5860796,+!p1@Klf6!1.05!245.88!Klf6;;chr17:44872561..44872615,-!p1@Runx2!1.05!23.51!Runx2;;chrX:137077653..137077669,-!p3@Tsc22d3!1.03!44.60!Tsc22d3;;chr13:83663902..83663927,+!p1@Mef2c!1.02!231.01!Mef2c;;chr19:37509324..37509337,+!p1@Hhex!1.02!67.98!Hhex;;chr11:23670953..23671028,-!p1@Rel!1.02!54.39!Rel;;chr6:52176164..52176195,-!p1@Hoxa9!1.02!11.82!Hoxa9;;chr17:27693887..27693908,+!p2@Hmga1-rs1,p2@Hmga1!1.00!66.58!Hmga1;;chr19:5447692..5447711,+!p2@Fosl1!1.00!9.02!Fosl1;;chr7:19895546..19895577,-!p3@Fosb!1.00!8.89!Fosb;;chr10:126727842..126727859,+!p1@Ddit3!0.99!257.83!Ddit3;;chr11:100683839..100683890,-!p2@Stat5b!0.99!20.84!Stat5b;;chr4:55545337..55545357,-!p1@Klf4!0.98!128.09!Klf4;;chr6:16848395..16848416,-!p2@Tfec!0.98!10.04!Tfec;;chr4:94718879..94718898,-!p1@Jun!0.97!621.37!Jun;;chr14:32979290..32979309,+!p3@Gm6768,p3@Ncoa4!0.96!9.66!Ncoa4;;chr17:45692676..45692695,+!p2@Nfkbie!0.95!16.26!Nfkbie;;chr17:44873258..44873281,-!p5@Runx2!0.95!10.55!Runx2;;chr16:3744162..3744180,+!p2@Zfp263!0.94!21.60!Zfp263;;chr1:36364590..36364608,+!p1@Arid5a!0.93!79.16!Arid5a;;chr16:55822241..55822258,-!p1@Nfkbiz!0.92!238.64!Nfkbiz;;chr13:83663868..83663894,+!p2@Mef2c!0.92!109.92!Mef2c;;chr19:5447886..5447905,+!p1@Fosl1!0.92!7.37!Fosl1;;chr19:46379199..46379301,+!p1@Nfkb2!0.91!42.44!Nfkb2;;chr4:124805092..124805135,-!p2@Zc3h12a!0.91!31.64!Zc3h12a;;chr2:56967334..56967366,-!p1@Nr4a2!0.91!14.99!Nr4a2;;chr5:22940353..22940372,+!p3@Mll5!0.91!14.23!Mll5;;chr2:90922519..90922544,+!p6@Sfpi1!0.91!8.01!Sfpi1;;chr9:32348943..32349001,-!p1@Fli1!0.90!58.83!Fli1;;chr6:99216488..99216534,-!p2@Foxp1!0.90!20.71!Foxp1;;chr17:45692642..45692663,+!p1@Nfkbie!0.87!21.73!Nfkbie;;chr13:5860872..5860883,+!p3@Klf6!0.87!13.34!Klf6;;chr3:135354384..135354443,-!p1@Nfkb1!0.86!40.28!Nfkb1;;chr15:25914114..25914128,+!p2@Zfp622!0.85!26.05!Zfp622;;chr15:103085660..103085681,-!p1@Nfe2!0.85!9.28!Nfe2;;chr13:59923965..59924003,-!p2@Zcchc6!0.85!7.37!Zcchc6;;chr6:28347999..28348023,-!p3@Zfp800!0.85!6.10!Zfp800;;chr13:64254457..64254497,-!p1@Zfp367!0.83!27.45!Zfp367;;chr15:38230415..38230426,-!p2@Klf10!0.83!21.47!Klf10;;chr8:87225670..87225697,+!p2@Lyl1!0.83!17.79!Lyl1;;chrX:137077636..137077647,-!p7@Tsc22d3!0.83!7.12!Tsc22d3;;chr16:92826232..92826245,-!p4@Runx1!0.83!5.72!Runx1;;chr19:12871064..12871095,-!p2@Zfp91!0.83!5.72!Zfp91;;chr2:44968512..44968530,-!p1@Zeb2!0.82!133.17!Zeb2;;chr19:5637528..5637548,+!p2@Rela!0.82!35.33!Rela;;chr13:64254437..64254453,-!p4@Zfp367!0.82!7.88!Zfp367;;chr15:80085920..80085941,+!p1@Atf4!0.80!656.57!Atf4;;chr6:52176144..52176161,-!p2@Hoxa9!0.80!5.34!Hoxa9;;chr12:87027598..87027652,+!p1@Batf!0.79!12.45!Batf;;chr16:92697560..92697592,-!p2@Runx1!0.78!34.69!Runx1;;chr4:48058129..48058179,+!p2@Nr4a3!0.78!10.04!Nr4a3;;chrX:137077682..137077692,-!p5@Tsc22d3!0.78!8.39!Tsc22d3;;chr17:84586544..84586592,-!p3@Zfp36l2!0.78!7.24!Zfp36l2;;chr18:3281750..3281776,-!p2@Crem!0.77!10.42!Crem;;chr2:90936886..90936898,+!p5@Sfpi1!0.77!5.97!Sfpi1;;chr1:52065508..52065522,+!p2@Stat4!0.77!5.85!Stat4;;chr1:38721767..38721778,-!p5@Aff3!0.77!4.83!Aff3;;chr4:134676555..134676575,+!p2@Runx3!0.77!4.83!Runx3;;chr7:35904304..35904320,+!p1@Cebpa!0.75!104.58!Cebpa;;chr11:53583544..53583559,+!p1@Irf1!0.75!85.65!Irf1;;chr16:3744192..3744206,+!p4@Zfp263!0.75!6.10!Zfp263;;chr15:103085690..103085710,-!p3@Nfe2!0.75!5.08!Nfe2;;chr8:73222425..73222444,+!p2@Jund!0.75!4.57!Jund;;chr11:11585678..11585745,+!p5@Ikzf1!0.74!6.86!Ikzf1;;chr15:38230448..38230470,-!p1@Klf10!0.73!102.80!Klf10;;chr7:31207408..31207450,+!p4@Nfkbid!0.73!7.62!Nfkbid;;chr6:133986088..133986122,+!p4@Etv6!0.72!20.08!Etv6;;chr6:133985709..133985735,+!p5@Etv6!0.72!12.96!Etv6;;chr10:5734525..5734569,-!p3@Esr1!0.72!7.37!Esr1;;chr6:133986042..133986052,+!p7@Etv6!0.72!5.72!Etv6;;chr10:119913792..119913820,-!p5@Hmga2!0.71!7.50!Hmga2;;chr14:32978970..32978984,+!p2@Gm6768,p2@Ncoa4!0.71!6.86!Ncoa4;;chr6:133985993..133986029,+!p2@Etv6!0.70!29.61!Etv6;;chr18:75527210..75527215,+!p4@Smad7!0.70!7.24!Smad7;;chr6:133985790..133985801,+!p8@Etv6!0.70!5.34!Etv6;;chr2:126501847..126501876,-!p5@Gabpb1!0.70!4.70!Gabpb1;;chr1:38721779..38721790,-!p6@Aff3!0.70!4.07!Aff3;;chr4:134708909..134708939,+!p3@Runx3!0.70!4.07!Runx3;;chr8:73222830..73222844,+!p1@Jund!0.69!1121.27!Jund;;chr16:95680889..95680991,-!p1@Erg!0.69!36.34!Erg;;chr7:29551464..29551487,-!p2@Nfkbib!0.69!16.77!Nfkbib;;chr1:186556410..186556424,-!p1@Hlx!0.69!13.47!Hlx;;chrX:48559079..48559108,-!p2@Mbnl3!0.69!9.91!Mbnl3;;chr6:28348078..28348109,-!p5@Zfp800!0.69!3.94!Zfp800;;chr6:53523358..53523388,+!p1@Creb5!0.68!51.97!Creb5;;chr15:79177964..79177986,+!p1@Maff!0.68!14.74!Maff;;chr7:71083729..71083742,-!p4@Klf13!0.68!7.24!Klf13;;chr16:92826180..92826191,-!p5@Runx1!0.68!3.81!Runx1;;chr4:133801432..133801448,-!p3@Zfp593!0.67!5.97!Zfp593;;chr17:51971932..51971958,-!p2@Satb1!0.67!5.21!Satb1;;chr4:133801453..133801492,-!p1@Zfp593!0.65!33.42!Zfp593;;chr5:145962698..145962742,-!p1@Zkscan14!0.65!18.43!Zkscan14;;chr12:32635051..32635062,-!p2@Hbp1!0.65!5.34!Hbp1;;chr6:108610428..108610440,+!p4@Bhlhe40!0.65!5.08!Bhlhe40;;chr7:20214704..20214800,-!p1@Relb!0.64!12.71!Relb;;chr1:92950099..92950109,+!p3@Lrrfip1!0.64!4.07!Lrrfip1;;chr6:29476690..29476724,+!p1@Irf5!0.63!17.41!Irf5;;chr10:5958538..5958568,+!p1@Zbtb2!0.63!17.03!Zbtb2;;chr11:100800641..100800669,-!p3@Stat3!0.63!6.10!Stat3;;chr1:87546583..87546595,+!p1@Sp100!0.62!4.83!Sp100;;chr7:19895122..19895142,-!p4@Fosb!0.62!3.18!Fosb;;chr15:25914217..25914232,+!p3@Zfp622!0.61!6.48!Zfp622;;chr2:28477452..28477483,-!p1@Gfi1b!0.61!3.94!Gfi1b;;chr1:92950128..92950139,+!p4@Lrrfip1!0.61!3.05!Lrrfip1;;chr15:103085864..103085876,-!p5@Nfe2!0.61!3.05!Nfe2;;chr3:30993974..30994045,+!p1@Skil!0.60!100.39!Skil;;chr16:98183746..98183801,-!p1@Zfp295!0.60!40.03!Zfp295;;chr4:48058016..48058032,+!p3@Nr4a3!0.60!5.59!Nr4a3;;chr8:107694628..107694659,+!p1@Cbfb!0.59!31.01!Cbfb;;chr10:20032330..20032345,+!p3@Bclaf1!0.59!16.77!Bclaf1;;chr19:5637501..5637517,+!p4@Rela!0.59!13.98!Rela;;chr4:63064364..63064384,-!p1@Akna!0.59!9.91!Akna;;chr1:172797864..172797873,-!p2@Atf6!0.59!9.15!Atf6;;chr2:153475178..153475196,+!p1@Dnmt3b!0.59!6.99!Dnmt3b;;chr12:78063057..78063070,-!p3@Max!0.59!6.86!Max;;chr15:79178029..79178044,+!p4@Maff!0.59!3.69!Maff;;chr7:133839456..133839523,+!p1@Bola2!0.58!172.31!Bola2;;chr1:92949999..92950097,+!p1@Lrrfip1!0.58!90.86!Lrrfip1;;chrX:137077716..137077734,-!p1@Tsc22d3!0.58!24.65!Tsc22d3;;chr8:87225702..87225726,+!p3@Lyl1!0.58!6.48!Lyl1;;chr17:71201096..71201114,-!p6@Tgif1!0.58!3.43!Tgif1;;chr17:44873599..44873623,-!p7@Runx2!0.58!2.80!Runx2;;chr17:44872524..44872537,-!p9@Runx2!0.58!2.80!Runx2;;chr11:23671230..23671264,-!p6@Rel!0.58!2.80!Rel;;chr10:20881239..20881254,-!p5@Myb!0.58!2.80!Myb;;chr6:86619104..86619119,-!p1@Mxd1!0.57!27.45!Mxd1;;chr17:88840082..88840127,+!p1@Foxn2!0.57!23.25!Foxn2;;chr8:107694661..107694713,+!p2@Cbfb!0.57!22.24!Cbfb;;chr11:23978111..23978134,+!p3@Bcl11a!0.57!6.48!Bcl11a;;chr11:120491440..120491474,-!p3@Mafg!0.57!4.32!Mafg;;chr7:31208285..31208312,+!p3@Nfkbid!0.57!3.05!Nfkbid;;chr5:22940320..22940331,+!p2@Mll5!0.56!9.53!Mll5;;chr7:56136974..56136989,-!p4@E2f8!0.56!4.83!E2f8;;chr5:31262571..31262582,-!p4@Preb!0.56!3.30!Preb;;chr6:29479277..29479296,+!p2@Irf5!0.56!2.67!Irf5;;chr14:32978944..32978953,+!p8@Gm6768,p8@Ncoa4!0.56!2.67!Ncoa4;;chr17:84587167..84587239,-!p2@Zfp36l2!0.55!10.42!Zfp36l2;;chrX:48558950..48559016,-!p1@Mbnl3!0.55!9.66!Mbnl3;;chr13:64254502..64254515,-!p3@Zfp367!0.55!4.19!Zfp367;;chr2:17985518..17985540,+!p6@Mllt10!0.55!3.81!Mllt10;;chr16:55838940..55838966,-!p5@Nfkbiz!0.55!2.92!Nfkbiz;;chr3:135257370..135257389,-!p9@Nfkb1!0.55!2.54!Nfkb1;;chr15:25914235..25914246,+!p5@Zfp622!0.55!2.54!Zfp622;;chr6:29479308..29479325,+!p3@Irf5!0.55!2.54!Irf5;;chr2:127347067..127347093,-!p1@Kcnip3!0.54!4.70!Kcnip3;;chrX:48559055..48559077,-!p6@Mbnl3!0.54!3.43!Mbnl3;;chr11:100721761..100721851,+!p1@Stat5a!0.53!21.98!Sta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pors;;chr16:55966451..55966484,+!p3@Rpl24,p3@Zbtb11!0.41!13.34!Zbtb11;;chr8:72520162..72520197,-!p4@Gatad2a!0.41!11.56!Gatad2a;;chr15:50721515..50721540,-!p3@Trps1!0.41!6.23!Trps1;;chr19:46380235..46380277,+!p3@Nfkb2!0.41!4.32!Nfkb2;;chr3:135354349..135354371,-!p6@Nfkb1!0.41!4.07!Nfkb1;;chr5:147760297..147760304,+!p4@Gtf3a!0.41!3.56!Gtf3a;;chr11:11590140..11590187,+!p3@Ikzf1!0.41!2.03!Ikzf1;;chr5:104183579..104183600,+!p9@Aff1!0.41!1.91!Aff1;;chr6:88148650..88148669,+!p1@Gata2!0.40!18.55!Gata2;;chr2:126501197..126501245,-!p1@Gabpb1!0.40!16.90!Gabpb1;;chr16:55973950..55973977,+!p4@Rpl24,p4@Zbtb11!0.40!10.04!Zbtb11;;chr5:104121453..104121479,+!p4@Aff1!0.40!9.91!Aff1;;chr8:72520139..72520157,-!p6@Gatad2a!0.40!8.39!Gatad2a;;chr1:133904217..133904250,+!p5@Elk4!0.40!6.73!Elk4;;chr17:71202822..71202877,-!p3@Tgif1!0.40!5.97!Tgif1;;chr17:27693706..27693724,+!p4@Hmga1,p5@Hmga1-rs1!0.40!4.96!Hmga1;;chr17:4994491..4994531,+!p6@Arid1b!0.40!3.94!Arid1b;;chr1:133904862..133904893,+!p6@Elk4!0.40!3.94!Elk4;;chr5:108494765..108494786,+!p2@Mtf2!0.40!2.29!Mtf2;;chr17:51971960..51971979,-!p1@Satb1!0.40!2.29!Satb1;;chr18:3281725..3281740,-!p3@Crem!0.40!2.16!Crem;;chr14:47896863..47896886,-!p5@Wdhd1!0.40!1.65!Wdhd1;;chr14:98568502..98568516,-!p7@Dach1!0.40!1.52!Dach1;;chr11:23670827..23670846,-!p3@Rel!0.40!1.52!Rel;;chr11:23671279..23671293,-!p8@Rel!0.40!1.52!Rel;;chr16:55838779..55838788,-!p9@Nfkbiz!0.40!1.52!Nfkbiz;;chr5:21290933..21291050,-!p1@Dnajc2!0.39!82.72!Dnajc2;;chr9:20757246..20757278,-!p1@Dnmt1!0.39!64.55!Dnmt1;;chr4:116480137..116480178,-!p1@Toe1!0.39!24.14!Toe1;;chr8:72356532..72356611,+!p1@Pbx4!0.39!8.51!Pbx4;;chr16:3872255..3872283,-!p4@Zfp597!0.39!2.54!Zfp597;;chr13:83663546..83663560,+!p4@Mef2c!0.39!2.16!Mef2c;;chr19:23215673..23215753,+!p1@Klf9!0.38!30.88!Klf9;;chr10:82226781..82226825,-!p1@Nfyb!0.38!26.68!Nfyb;;chr14:47896467..47896523,-!p1@Wdhd1!0.38!25.67!Wdhd1;;chr11:101413151..101413207,-!p1@Brca1!0.38!20.46!Brca1;;chr6:124959016..124959061,+!p3@Zfp384!0.38!5.08!Zfp384;;chr1:95651346..95651383,-!p3@Thap4!0.38!4.45!Thap4;;chr3:90097275..90097302,+!p2@Gatad2b!0.38!4.32!Gatad2b;;chr16:55822638..55822669,-!p3@Nfkbiz!0.38!2.54!Nfkbiz;;chr3:133207214..133207228,-!p2@Tet2!0.38!1.91!Tet2;;chr10:20881176..20881191,-!p6@Myb!0.38!1.40!Myb;;chr2:83484721..83484734,+!p3@Zc3h15!0.37!24.52!Zc3h15;;chr3:135354289..135354334,-!p3@Nfkb1!0.37!10.29!Nfkb1;;chr2:72818978..72818997,-!p4@Sp3!0.37!8.64!Sp3;;chr6:131338278..131338362,-!p2@Csda!0.37!5.59!Csda;;chr16:55966407..55966447,+!p6@Rpl24,p6@Zbtb11!0.37!4.45!Zbtb11;;chr4:151235776..151235788,-!p5@Camta1!0.37!2.92!Camta1;;chr6:98978868..98978918,-!p6@Foxp1!0.37!2.92!Foxp1;;chr16:92697354..92697362,-!p3@Runx1!0.37!2.54!Runx1;;chr19:5423800..5423821,-!p5@Drap1!0.37!2.41!Drap1;;chr5:104182694..104182724,+!p8@Aff1!0.37!1.91!Aff1;;chr15:36937137..36937157,-!p2@Gm10193,p2@Zfp706!0.36!63.66!Zfp706;;chr15:81702313..81702346,-!p1@Phf5a!0.36!62.65!Phf5a;;chr1:173341474..173341513,+!p2@Usf1!0.36!27.70!Usf1;;chr7:134169762..134169795,-!p3@Maz!0.36!18.30!Maz;;chr5:125538737..125538781,-!p2@Ncor2!0.36!6.86!Ncor2;;chr18:3337339..3337397,-!p5@Crem!0.36!3.43!Crem;;chr13:29045321..29045337,-!p2@Sox4!0.36!2.03!Sox4;;chr16:55973994..55974005,+!p8@Rpl24,p8@Zbtb11!0.36!1.78!Zbtb11;;chr19:37511111..37511115,+!p2@Hhex!0.36!1.27!Hhex;;chr17:44873311..44873322,-!p13@Runx2!0.36!1.27!Runx2;;chr5:92391970..92391984,+!p5@Thap6!0.36!1.27!Thap6;;chr6:16848443..16848459,-!p3@Tfec!0.36!1.27!Tfec;;chr1:87495371..87495397,-!p1@Sp110!0.36!1.27!Sp110;;chr15:103085821..103085828,-!p6@Nfe2!0.36!1.27!Nfe2;;chr10:20881160..20881175,-!p4@Myb!0.36!1.27!Myb;;chr11:62272200..62272221,-!p11@Ncor1!0.36!1.27!Ncor1;;chr8:108582687..108582734,+!p4@Nfatc3!0.36!1.27!Nfatc3;;chr1:93309740..93309811,-!p1@Hes6!0.35!40.54!Hes6;;chr11:69393868..69393884,+!p2@Trp53!0.35!27.32!Trp53;;chr17:21625946..21626024,+!p1@Zfp53!0.35!21.73!Zfp53;;chr15:61816932..61816952,+!p2@Myc!0.35!16.26!Myc;;chr16:4559608..4559681,-!p1@Tfap4!0.35!16.01!Tfap4;;chr4:133801494..133801519,-!p2@Zfp593!0.35!13.85!Zfp593;;chr7:49761065..49761106,-!p1@ENSMUST00000174407,p1@uc009gmb.1!0.35!10.42!Zfp141;;chr16:87699206..87699229,+!p3@Bach1!0.35!10.29!Bach1;;chr6:131338363..131338383,-!p4@Csda!0.35!8.39!Csda;;chrX:45807489..45807502,-!p2@Elf4!0.35!5.59!Elf4;;chr5:147760339..147760350,+!p3@Gtf3a!0.35!5.21!Gtf3a;;chr13:59924173..59924194,-!p4@Zcchc6!0.35!2.80!Zcchc6;;chr7:30638614..30638628,-!p2@Zfp940!0.35!2.41!Zfp940;;chr13:59924319..59924331,-!p5@Zcchc6!0.35!2.16!Zcchc6;;chr12:78063032..78063043,-!p4@Max!0.35!2.03!Max;;chr18:55149778..55149798,-!p11@Zfp608!0.35!2.03!Zfp608;;chr11:120624132..120624143,+!p10@Hmga1,p9@Hmga1-rs1!0.35!1.78!Hmga1;;chr6:108610610..108610676,+!p1@Bhlhe40!0.34!97.21!Bhlhe40;;chr6:86619130..86619158,-!p2@Mxd1!0.34!27.96!Mxd1;;chr2:156665817..156665877,+!p1@Tgif2!0.34!11.94!Tgif2;;chr13:22036953..22037009,+!p1@Zfp184!0.34!4.57!Zfp184;;chr7:50817661..50817687,+!p2@LOC100505180,p2@Zfp658!0.34!3.69!Zfp658;;chr13:44825008..44825066,+!p5@Jarid2!0.34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| ||
Line 41: | Line 44: | ||
|is_a=EFO:0002091;;FF:0000041;;FF:0000103 | |is_a=EFO:0002091;;FF:0000041;;FF:0000103 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs12551 | |||
|library_id_phase_based=2:CNhs12551 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/mouse#cage;sample;12128 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/mouse#cage;sample;12128 | |||
|mm10bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.primary_cell.LQhCAGE/common%2520myeloid%2520progenitor%2520CMP%252c%2520biol_rep3.CNhs12551.12128-128D4.mm10.nobarcode.bam | |||
|mm10ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/mm10_v2/basic/mouse.primary_cell.LQhCAGE/common%2520myeloid%2520progenitor%2520CMP%252c%2520biol_rep3.CNhs12551.12128-128D4.mm10.nobarcode.ctss.bed.gz | |||
|mm9bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.LQhCAGE/common%2520myeloid%2520progenitor%2520CMP%252c%2520biol_rep3.CNhs12551.12128-128D4.mm9.nobarcode.bam | |||
|mm9ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.LQhCAGE/common%2520myeloid%2520progenitor%2520CMP%252c%2520biol_rep3.CNhs12551.12128-128D4.mm9.ctss.bed.gz | |||
|mm9fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/mouse.primary_cell.LQhCAGE/common%2520myeloid%2520progenitor%2520CMP%252c%2520biol_rep3.CNhs12551.12128-128D4.mm9.nobarcode.rdna.fa.gz | |||
|name=common myeloid progenitor CMP, biol_rep3 | |name=common myeloid progenitor CMP, biol_rep3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 46: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs12551,LSID921,release012,COMPLETED | |profile_hcage=CNhs12551,LSID921,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|repeat_enrich_byfamily=-0.11779559634038,0,0,0,0.0519509775191307,0,-0.24735381395849,0,0,0,0,-0.0843392403965415,0,0,0,0,0.316927347580919,0,-0.139942373363444,0,0.089241116907443,0,0,0,0,0,0,0,0,0,0,0,-0.0251167495389848,0,0,0,0,-0.0233343073597331,0.0322241612137505,-0.184929286974461,-0.159791356656061,-0.984211366477826,-0.269868638010351,0,0,0,0,0,0,0,0,0,0,0,0,0.112476686251446,0,0,0,0,-0.0428469550828748,0,0,0,0.0519509775191307,0,-0.0914143141487609,0.133235260693963,-0.158091042771083,-0.0655391060670712,0,0,-0.163649328246584,-0.284051586260151,0.516834595184949,0,-0.111471060110387,-0.24115538758951,-0.59591488074057,0.061428333349397,0,0,0,0,0,0,-0.264295134298998,-0.708543480381515,-0.217852024712268,0,0,0,0,0 | |||
|rna_box=128 | |rna_box=128 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
Line 61: | Line 76: | ||
|rna_weight_ug=1.73404 | |rna_weight_ug=1.73404 | ||
|sample_age=9-10weeks | |sample_age=9-10weeks | ||
|sample_category=primary cells | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 81: | Line 97: | ||
|top_motifs=NFE2:2.60585081597;YY1:2.59978936936;ATF4:2.5910217562;FOXP3:2.37977512877;NFKB1_REL_RELA:2.16864239972;RUNX1..3:2.1541170291;SPI1:2.07095874341;CREB1:2.02709948984;SPIB:2.0066749971;ELF1,2,4:1.98227033711;DMAP1_NCOR{1,2}_SMARC:1.88320857672;PAX8:1.77377683041;E2F1..5:1.759878388;BACH2:1.69756420486;ETS1,2:1.68021945831;bHLH_family:1.67536179056;CEBPA,B_DDIT3:1.67099467555;FOS_FOS{B,L1}_JUN{B,D}:1.66013071776;ATF5_CREB3:1.65813744458;ELK1,4_GABP{A,B1}:1.56722549944;MYB:1.46156000778;FOX{I1,J2}:1.40768221542;PAX2:1.2698228394;ZBTB16:1.24408335314;BPTF:1.16026116483;NFE2L1:1.15872500325;AIRE:1.13595764944;NKX2-2,8:1.11535072786;IRF1,2:1.05095026098;NR6A1:0.947515486494;NANOG{mouse}:0.927752334573;ALX1:0.893930094716;TEF:0.826191984486;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.820779600081;ALX4:0.814229310875;POU2F1..3:0.812582535669;NFY{A,B,C}:0.719379388568;ZNF384:0.693788649608;NKX6-1,2:0.688559428679;HLF:0.641844503504;HMX1:0.632974276395;NFIL3:0.615829522564;FOXQ1:0.517567855415;HSF1,2:0.428803081722;STAT2,4,6:0.423495652209;FOSL2:0.421645880925;ARID5B:0.415705613137;NFATC1..3:0.402326956721;STAT1,3:0.378128088891;PITX1..3:0.352330848818;SPZ1:0.343081880365;HES1:0.329411695803;PPARG:0.315642024221;ATF2:0.25692772486;ZNF143:0.212252096674;SOX17:0.205803539397;ATF6:0.197232719364;JUN:0.196023490629;POU1F1:0.193530529333;IRF7:0.173395172465;SREBF1,2:0.116012505945;TP53:0.109591356115;POU5F1:0.090330885316;NANOG:0.0850826138286;STAT5{A,B}:0.0630890618803;CDC5L:0.0514160424483;FOXP1:0.0452391892632;TLX2:0.0313735586869;FOXD3:0.0279915738156;FOX{D1,D2}:-0.0115162893936;IKZF2:-0.0380035773091;FOXO1,3,4:-0.0528104642237;AHR_ARNT_ARNT2:-0.0659349772099;FOXL1:-0.0738556941121;PBX1:-0.110943209772;NRF1:-0.137943626539;RFX2..5_RFXANK_RFXAP:-0.147636139233;SOX2:-0.159376387803;GATA6:-0.168529075817;RXR{A,B,G}:-0.17190669037;NFE2L2:-0.176645920515;TBP:-0.214437052077;TFDP1:-0.251904996938;PAX6:-0.254682902377;RORA:-0.265638718656;ESRRA:-0.303169998624;CRX:-0.313167803574;AR:-0.335398957953;MEF2{A,B,C,D}:-0.340858758394;CDX1,2,4:-0.343090494688;PAX4:-0.346542020052;NR5A1,2:-0.353975508156;GFI1:-0.354756063695;PRDM1:-0.363969113481;NKX2-3_NKX2-5:-0.377264794455;TBX4,5:-0.378589714377;FOX{F1,F2,J1}:-0.411818539084;ZBTB6:-0.422630281777;HOX{A4,D4}:-0.454296064294;EP300:-0.455322335909;RFX1:-0.468133074756;NR1H4:-0.468521800931;GATA4:-0.501841845349;RXRA_VDR{dimer}:-0.525334413542;BREu{core}:-0.541116511372;HIF1A:-0.556234522791;NFIX:-0.568003267632;CUX2:-0.576746783693;FOXN1:-0.581933534357;SRF:-0.601247086466;NR3C1:-0.614211723995;HNF4A_NR2F1,2:-0.619557057678;DBP:-0.630300952812;NKX3-1:-0.631196210438;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.633463652843;ZIC1..3:-0.634985123835;OCT4_SOX2{dimer}:-0.640223055117;HBP1_HMGB_SSRP1_UBTF:-0.684992056466;PDX1:-0.704353972901;HNF1A:-0.720104273925;PAX1,9:-0.742097959422;FOXA2:-0.765308677943;MTF1:-0.766533069316;PRRX1,2:-0.789818576699;UFEwm:-0.798980047999;POU3F1..4:-0.837782910893;MYOD1:-0.840007856543;EGR1..3:-0.841883043589;EN1,2:-0.856760824697;VSX1,2:-0.865645003212;ONECUT1,2:-0.865925878527;GLI1..3:-0.871727013141;ZNF148:-0.878388900021;ZEB1:-0.879385688221;LMO2:-0.897440843496;SOX{8,9,10}:-0.931511454488;POU6F1:-0.952044482002;HAND1,2:-0.96321486754;TGIF1:-0.989596102753;ZFP161:-1.00515954731;NHLH1,2:-1.0134622545;LHX3,4:-1.01683370333;ESR1:-1.02193865223;MYBL2:-1.04301685987;REST:-1.0483642437;EVI1:-1.05239574819;GZF1:-1.07037852786;PAX5:-1.09076317369;ZNF238:-1.15259244916;MZF1:-1.15852007527;GTF2A1,2:-1.20101067262;RBPJ:-1.20291575228;GCM1,2:-1.23819123374;MYFfamily:-1.25245591669;NKX2-1,4:-1.26328775463;SOX5:-1.27720973014;MED-1{core}:-1.28036659123;ADNP_IRX_SIX_ZHX:-1.30880181374;KLF4:-1.31490076169;ZNF423:-1.32478377565;MTE{core}:-1.38004210632;LEF1_TCF7_TCF7L1,2:-1.41965595369;SNAI1..3:-1.42515018222;EBF1:-1.45251035342;TFAP2{A,C}:-1.4550325183;MAFB:-1.45544684711;TOPORS:-1.46481890656;TAL1_TCF{3,4,12}:-1.47003459488;TFCP2:-1.47874045445;HOXA9_MEIS1:-1.49516932835;RREB1:-1.51219542471;T:-1.56485649114;TEAD1:-1.57061336932;SP1:-1.5715407379;GFI1B:-1.58077059001;TFAP2B:-1.59748884133;XCPE1{core}:-1.61432359891;MAZ:-1.65613785101;NKX3-2:-1.6701376361;FOXM1:-1.67986829488;TLX1..3_NFIC{dimer}:-1.7125295202;TFAP4:-1.73104080712;HIC1:-1.74481187009;SMAD1..7,9:-1.75932756264;GTF2I:-1.79047813475;IKZF1:-1.81695365305;HOX{A5,B5}:-1.84836938413;PATZ1:-1.98374999379;HMGA1,2:-2.07509767129 | |top_motifs=NFE2:2.60585081597;YY1:2.59978936936;ATF4:2.5910217562;FOXP3:2.37977512877;NFKB1_REL_RELA:2.16864239972;RUNX1..3:2.1541170291;SPI1:2.07095874341;CREB1:2.02709948984;SPIB:2.0066749971;ELF1,2,4:1.98227033711;DMAP1_NCOR{1,2}_SMARC:1.88320857672;PAX8:1.77377683041;E2F1..5:1.759878388;BACH2:1.69756420486;ETS1,2:1.68021945831;bHLH_family:1.67536179056;CEBPA,B_DDIT3:1.67099467555;FOS_FOS{B,L1}_JUN{B,D}:1.66013071776;ATF5_CREB3:1.65813744458;ELK1,4_GABP{A,B1}:1.56722549944;MYB:1.46156000778;FOX{I1,J2}:1.40768221542;PAX2:1.2698228394;ZBTB16:1.24408335314;BPTF:1.16026116483;NFE2L1:1.15872500325;AIRE:1.13595764944;NKX2-2,8:1.11535072786;IRF1,2:1.05095026098;NR6A1:0.947515486494;NANOG{mouse}:0.927752334573;ALX1:0.893930094716;TEF:0.826191984486;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.820779600081;ALX4:0.814229310875;POU2F1..3:0.812582535669;NFY{A,B,C}:0.719379388568;ZNF384:0.693788649608;NKX6-1,2:0.688559428679;HLF:0.641844503504;HMX1:0.632974276395;NFIL3:0.615829522564;FOXQ1:0.517567855415;HSF1,2:0.428803081722;STAT2,4,6:0.423495652209;FOSL2:0.421645880925;ARID5B:0.415705613137;NFATC1..3:0.402326956721;STAT1,3:0.378128088891;PITX1..3:0.352330848818;SPZ1:0.343081880365;HES1:0.329411695803;PPARG:0.315642024221;ATF2:0.25692772486;ZNF143:0.212252096674;SOX17:0.205803539397;ATF6:0.197232719364;JUN:0.196023490629;POU1F1:0.193530529333;IRF7:0.173395172465;SREBF1,2:0.116012505945;TP53:0.109591356115;POU5F1:0.090330885316;NANOG:0.0850826138286;STAT5{A,B}:0.0630890618803;CDC5L:0.0514160424483;FOXP1:0.0452391892632;TLX2:0.0313735586869;FOXD3:0.0279915738156;FOX{D1,D2}:-0.0115162893936;IKZF2:-0.0380035773091;FOXO1,3,4:-0.0528104642237;AHR_ARNT_ARNT2:-0.0659349772099;FOXL1:-0.0738556941121;PBX1:-0.110943209772;NRF1:-0.137943626539;RFX2..5_RFXANK_RFXAP:-0.147636139233;SOX2:-0.159376387803;GATA6:-0.168529075817;RXR{A,B,G}:-0.17190669037;NFE2L2:-0.176645920515;TBP:-0.214437052077;TFDP1:-0.251904996938;PAX6:-0.254682902377;RORA:-0.265638718656;ESRRA:-0.303169998624;CRX:-0.313167803574;AR:-0.335398957953;MEF2{A,B,C,D}:-0.340858758394;CDX1,2,4:-0.343090494688;PAX4:-0.346542020052;NR5A1,2:-0.353975508156;GFI1:-0.354756063695;PRDM1:-0.363969113481;NKX2-3_NKX2-5:-0.377264794455;TBX4,5:-0.378589714377;FOX{F1,F2,J1}:-0.411818539084;ZBTB6:-0.422630281777;HOX{A4,D4}:-0.454296064294;EP300:-0.455322335909;RFX1:-0.468133074756;NR1H4:-0.468521800931;GATA4:-0.501841845349;RXRA_VDR{dimer}:-0.525334413542;BREu{core}:-0.541116511372;HIF1A:-0.556234522791;NFIX:-0.568003267632;CUX2:-0.576746783693;FOXN1:-0.581933534357;SRF:-0.601247086466;NR3C1:-0.614211723995;HNF4A_NR2F1,2:-0.619557057678;DBP:-0.630300952812;NKX3-1:-0.631196210438;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.633463652843;ZIC1..3:-0.634985123835;OCT4_SOX2{dimer}:-0.640223055117;HBP1_HMGB_SSRP1_UBTF:-0.684992056466;PDX1:-0.704353972901;HNF1A:-0.720104273925;PAX1,9:-0.742097959422;FOXA2:-0.765308677943;MTF1:-0.766533069316;PRRX1,2:-0.789818576699;UFEwm:-0.798980047999;POU3F1..4:-0.837782910893;MYOD1:-0.840007856543;EGR1..3:-0.841883043589;EN1,2:-0.856760824697;VSX1,2:-0.865645003212;ONECUT1,2:-0.865925878527;GLI1..3:-0.871727013141;ZNF148:-0.878388900021;ZEB1:-0.879385688221;LMO2:-0.897440843496;SOX{8,9,10}:-0.931511454488;POU6F1:-0.952044482002;HAND1,2:-0.96321486754;TGIF1:-0.989596102753;ZFP161:-1.00515954731;NHLH1,2:-1.0134622545;LHX3,4:-1.01683370333;ESR1:-1.02193865223;MYBL2:-1.04301685987;REST:-1.0483642437;EVI1:-1.05239574819;GZF1:-1.07037852786;PAX5:-1.09076317369;ZNF238:-1.15259244916;MZF1:-1.15852007527;GTF2A1,2:-1.20101067262;RBPJ:-1.20291575228;GCM1,2:-1.23819123374;MYFfamily:-1.25245591669;NKX2-1,4:-1.26328775463;SOX5:-1.27720973014;MED-1{core}:-1.28036659123;ADNP_IRX_SIX_ZHX:-1.30880181374;KLF4:-1.31490076169;ZNF423:-1.32478377565;MTE{core}:-1.38004210632;LEF1_TCF7_TCF7L1,2:-1.41965595369;SNAI1..3:-1.42515018222;EBF1:-1.45251035342;TFAP2{A,C}:-1.4550325183;MAFB:-1.45544684711;TOPORS:-1.46481890656;TAL1_TCF{3,4,12}:-1.47003459488;TFCP2:-1.47874045445;HOXA9_MEIS1:-1.49516932835;RREB1:-1.51219542471;T:-1.56485649114;TEAD1:-1.57061336932;SP1:-1.5715407379;GFI1B:-1.58077059001;TFAP2B:-1.59748884133;XCPE1{core}:-1.61432359891;MAZ:-1.65613785101;NKX3-2:-1.6701376361;FOXM1:-1.67986829488;TLX1..3_NFIC{dimer}:-1.7125295202;TFAP4:-1.73104080712;HIC1:-1.74481187009;SMAD1..7,9:-1.75932756264;GTF2I:-1.79047813475;IKZF1:-1.81695365305;HOX{A5,B5}:-1.84836938413;PATZ1:-1.98374999379;HMGA1,2:-2.07509767129 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_mouse;search_select_hide=table111:12128-128D4;search_select_hide=table117:12128-128D4 | |||
}} | }} |
Latest revision as of 18:31, 4 June 2020
Name: | common myeloid progenitor CMP, biol_rep3 |
---|---|
Species: | Mouse (Mus musculus) |
Library ID: | CNhs12551 |
Sample type: | primary cells |
Genomic View: | UCSC |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
CNhs12551
0 | 0 |
1 | 0 |
10 | 0 |
100 | 0 |
1000 | 0 |
1001 | -0.0749 |
1002 | -0.116 |
1003 | -0.0786 |
1004 | 0 |
1005 | 0.0413 |
1006 | -0.2 |
1007 | -0.288 |
1008 | 0 |
1009 | -0.161 |
101 | 0.259 |
1010 | 0 |
1011 | 0 |
1012 | 0 |
1013 | -0.16 |
1014 | -0.0874 |
1015 | -0.0554 |
1016 | -0.496 |
1017 | 0 |
1018 | 0 |
1019 | 0 |
102 | 0.052 |
1020 | 0.0983 |
1021 | 0 |
1022 | -0.221 |
1023 | 0.634 |
1024 | 0.457 |
1025 | -0.0611 |
1026 | 0 |
1027 | -0.048 |
1028 | 0 |
1029 | -0.131 |
103 | -0.0887 |
1030 | 0 |
1031 | -0.911 |
1032 | -0.436 |
1033 | 0.103 |
1034 | 0 |
1035 | 0 |
1036 | 0.544 |
1037 | 0 |
1038 | -0.283 |
1039 | 0.0315 |
104 | 0 |
1040 | -0.23 |
1041 | 0 |
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12551
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12551
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.392 |
10 | 10 | 0.0457 |
100 | 100 | 0.637 |
101 | 101 | 0.905 |
102 | 102 | 0.674 |
103 | 103 | 0.27 |
104 | 104 | 0.81 |
105 | 105 | 0.544 |
106 | 106 | 0.17 |
107 | 107 | 0.912 |
108 | 108 | 0.499 |
109 | 109 | 0.0889 |
11 | 11 | 0.236 |
110 | 110 | 0.148 |
111 | 111 | 0.257 |
112 | 112 | 0.144 |
113 | 113 | 0.544 |
114 | 114 | 0.493 |
115 | 115 | 0.571 |
116 | 116 | 0.777 |
117 | 117 | 2.68768e-4 |
118 | 118 | 0.215 |
119 | 119 | 1 |
12 | 12 | 0.685 |
120 | 120 | 0.306 |
121 | 121 | 0.431 |
122 | 122 | 0.435 |
123 | 123 | 0.162 |
124 | 124 | 0.412 |
125 | 125 | 0.423 |
126 | 126 | 0.512 |
127 | 127 | 0.611 |
128 | 128 | 0.244 |
129 | 129 | 0.302 |
13 | 13 | 0.00129 |
130 | 130 | 0.529 |
131 | 131 | 0.338 |
132 | 132 | 0.405 |
133 | 133 | 0.353 |
134 | 134 | 0.683 |
135 | 135 | 0.713 |
136 | 136 | 0.233 |
137 | 137 | 0.00671 |
138 | 138 | 0.793 |
139 | 139 | 0.521 |
14 | 14 | 0.492 |
140 | 140 | 0.481 |
141 | 141 | 0.519 |
142 | 142 | 0.861 |
143 | 143 | 0.194 |
144 | 144 | 0.89 |
145 | 145 | 0.0553 |
146 | 146 | 0.684 |
147 | 147 | 0.576 |
148 | 148 | 0.24 |
149 | 149 | 0.151 |
15 | 15 | 0.034 |
150 | 150 | 0.573 |
151 | 151 | 0.811 |
152 | 152 | 0.802 |
153 | 153 | 0.411 |
154 | 154 | 0.663 |
155 | 155 | 0.947 |
156 | 156 | 0.372 |
157 | 157 | 0.937 |
158 | 158 | 0.0595 |
159 | 159 | 0.465 |
160 | 160 | 0.567 |
161 | 161 | 0.152 |
162 | 162 | 0.396 |
163 | 163 | 0.261 |
164 | 164 | 0.0109 |
165 | 165 | 0.158 |
166 | 166 | 0.382 |
167 | 167 | 0.224 |
168 | 168 | 0.673 |
169 | 169 | 0.0396 |
17 | 17 | 0.683 |
18 | 18 | 0.374 |
19 | 19 | 0.623 |
2 | 2 | 0.0711 |
20 | 20 | 0.0123 |
21 | 21 | 0.389 |
22 | 22 | 0.83 |
23 | 23 | 0.201 |
24 | 24 | 0.037 |
25 | 25 | 0.294 |
26 | 26 | 0.0043 |
27 | 27 | 0.354 |
28 | 28 | 0.694 |
29 | 29 | 0.0103 |
3 | 3 | 0.144 |
30 | 30 | 0.173 |
31 | 31 | 0.708 |
32 | 32 | 0.313 |
33 | 33 | 0.0919 |
34 | 34 | 0.613 |
35 | 35 | 0.525 |
36 | 36 | 0.0486 |
37 | 37 | 0.0477 |
38 | 38 | 0.518 |
39 | 39 | 0.641 |
4 | 4 | 0.594 |
40 | 40 | 0.156 |
41 | 41 | 0.0767 |
42 | 42 | 0.366 |
43 | 43 | 0.519 |
44 | 44 | 0.7 |
45 | 45 | 0.693 |
46 | 46 | 0.317 |
47 | 47 | 0.674 |
48 | 48 | 0.333 |
49 | 49 | 0.462 |
5 | 5 | 0.561 |
50 | 50 | 0.682 |
51 | 51 | 0.978 |
52 | 52 | 0.531 |
53 | 53 | 0.606 |
54 | 54 | 0.743 |
55 | 55 | 0.593 |
56 | 56 | 0.788 |
57 | 57 | 0.413 |
58 | 58 | 0.265 |
59 | 59 | 0.929 |
6 | 6 | 0.785 |
60 | 60 | 0.527 |
61 | 61 | 0.212 |
62 | 62 | 0.189 |
63 | 63 | 0.93 |
64 | 64 | 0.81 |
65 | 65 | 0.885 |
66 | 66 | 0.32 |
67 | 67 | 0.339 |
68 | 68 | 0.685 |
69 | 69 | 0.704 |
7 | 7 | 0.265 |
70 | 70 | 0.168 |
71 | 71 | 0.0155 |
72 | 72 | 0.117 |
73 | 73 | 0.0509 |
74 | 74 | 0.655 |
75 | 75 | 0.00647 |
76 | 76 | 0.049 |
77 | 77 | 0.132 |
78 | 78 | 0.143 |
79 | 79 | 0.691 |
8 | 8 | 0.0949 |
80 | 80 | 0.711 |
81 | 81 | 0.938 |
82 | 82 | 0.345 |
83 | 83 | 0.0703 |
84 | 84 | 0.38 |
85 | 85 | 0.52 |
86 | 86 | 0.213 |
87 | 87 | 0.0452 |
88 | 88 | 0.508 |
89 | 89 | 0.994 |
9 | 9 | 0.882 |
90 | 90 | 0.0306 |
91 | 91 | 0.843 |
92 | 92 | 0.991 |
93 | 93 | 0.167 |
94 | 94 | 0.458 |
95 | 95 | 0.003 |
96 | 96 | 0.998 |
97 | 97 | 0.938 |
98 | 98 | 0.523 |
99 | 99 | 0.231 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12551
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000041 common myeloid progenitor sample
FF:0000103 mouse sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002032 (hematopoietic oligopotent progenitor cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000049 (common myeloid progenitor)
FF: FANTOM5
0000102 (sample by type)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000041 (common myeloid progenitor sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)