FF:10085-102B4: Difference between revisions

Revision as of 18:38, 29 June 2012

Name:	brain, fetal, pool1
Species:	Human (Homo sapiens)
Library ID:	{{{library_id}}}
Sample type:	{{{sample_category}}}
Genomic View:	UCSC
CAGEd-oPOSSUM:	link

Additional information

Sample information

strain	NA
tissue	brain
dev stage	20-33 weeks fetus
sex	mixed
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Clontech
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	8101369A-5
catalog number	Cat: 636643 Lot: 8101369A-5
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

Download raw sequence, BAM & CTSS

Hg19

BAM	CTSS
[{{{hg19bam}}} download]	[{{{hg19ctss}}} donwload]

Hg38

BAM	CTSS
[{{{hg38bam}}} download]	[{{{hg38ctss}}} donwload]

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0.844
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.144
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.32
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0321
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.144
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0486
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0.844
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.0737
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.0626
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0.477
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0.477
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.28
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.477
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.698
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0.477
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data no result for this sample

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11797

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00504
MA0003.1	MA0003.1	0.253
MA0004.1	MA0004.1	0.713
MA0006.1	MA0006.1	0.328
MA0007.1	MA0007.1	0.144
MA0009.1	MA0009.1	0.123
MA0014.1	MA0014.1	0.516
MA0017.1	MA0017.1	0.00269
MA0018.2	MA0018.2	0.0693
MA0019.1	MA0019.1	0.575
MA0024.1	MA0024.1	0.818
MA0025.1	MA0025.1	0.303
MA0027.1	MA0027.1	0.357
MA0028.1	MA0028.1	0.0213
MA0029.1	MA0029.1	0.131
MA0030.1	MA0030.1	0.712
MA0031.1	MA0031.1	0.462
MA0035.2	MA0035.2	0.233
MA0038.1	MA0038.1	0.0127
MA0039.2	MA0039.2	0.17
MA0040.1	MA0040.1	0.699
MA0041.1	MA0041.1	0.787
MA0042.1	MA0042.1	0.947
MA0043.1	MA0043.1	0.841
MA0046.1	MA0046.1	0.859
MA0047.2	MA0047.2	0.0489
MA0048.1	MA0048.1	0.264
MA0050.1	MA0050.1	8.77636e-7
MA0051.1	MA0051.1	0.00106
MA0052.1	MA0052.1	0.0427
MA0055.1	MA0055.1	0.0201
MA0057.1	MA0057.1	0.505
MA0058.1	MA0058.1	0.615
MA0059.1	MA0059.1	0.244
MA0060.1	MA0060.1	0.0326
MA0061.1	MA0061.1	0.0248
MA0062.2	MA0062.2	2.76307e-4
MA0065.2	MA0065.2	0.00146
MA0066.1	MA0066.1	0.0573
MA0067.1	MA0067.1	0.818
MA0068.1	MA0068.1	0.014
MA0069.1	MA0069.1	0.21
MA0070.1	MA0070.1	0.0364
MA0071.1	MA0071.1	0.0965
MA0072.1	MA0072.1	0.884
MA0073.1	MA0073.1	0.315
MA0074.1	MA0074.1	0.223
MA0076.1	MA0076.1	0.0208
MA0077.1	MA0077.1	0.193
MA0078.1	MA0078.1	0.359
MA0079.2	MA0079.2	0.736
MA0080.2	MA0080.2	6.88182e-10
MA0081.1	MA0081.1	0.0244
MA0083.1	MA0083.1	0.0745
MA0084.1	MA0084.1	0.775
MA0087.1	MA0087.1	0.701
MA0088.1	MA0088.1	0.101
MA0090.1	MA0090.1	0.177
MA0091.1	MA0091.1	0.848
MA0092.1	MA0092.1	0.703
MA0093.1	MA0093.1	0.733
MA0099.2	MA0099.2	1.11733e-12
MA0100.1	MA0100.1	0.717
MA0101.1	MA0101.1	0.0105
MA0102.2	MA0102.2	0.0174
MA0103.1	MA0103.1	0.409
MA0104.2	MA0104.2	0.837
MA0105.1	MA0105.1	0.00655
MA0106.1	MA0106.1	0.0467
MA0107.1	MA0107.1	0.0225
MA0108.2	MA0108.2	2.71463e-4
MA0111.1	MA0111.1	0.495
MA0112.2	MA0112.2	5.22808e-4
MA0113.1	MA0113.1	0.178
MA0114.1	MA0114.1	0.0053
MA0115.1	MA0115.1	0.514
MA0116.1	MA0116.1	0.0123
MA0117.1	MA0117.1	0.986
MA0119.1	MA0119.1	0.0956
MA0122.1	MA0122.1	0.41
MA0124.1	MA0124.1	0.855
MA0125.1	MA0125.1	0.443
MA0131.1	MA0131.1	0.801
MA0135.1	MA0135.1	0.0571
MA0136.1	MA0136.1	4.47534e-15
MA0137.2	MA0137.2	0.0509
MA0138.2	MA0138.2	0.084
MA0139.1	MA0139.1	0.232
MA0140.1	MA0140.1	0.0184
MA0141.1	MA0141.1	0.0205
MA0142.1	MA0142.1	0.429
MA0143.1	MA0143.1	0.335
MA0144.1	MA0144.1	0.0903
MA0145.1	MA0145.1	0.144
MA0146.1	MA0146.1	0.0122
MA0147.1	MA0147.1	0.635
MA0148.1	MA0148.1	0.0575
MA0149.1	MA0149.1	0.0164
MA0150.1	MA0150.1	3.51289e-5
MA0152.1	MA0152.1	0.872
MA0153.1	MA0153.1	0.714
MA0154.1	MA0154.1	0.0439
MA0155.1	MA0155.1	0.764
MA0156.1	MA0156.1	5.64254e-10
MA0157.1	MA0157.1	0.258
MA0159.1	MA0159.1	0.00593
MA0160.1	MA0160.1	0.0151
MA0162.1	MA0162.1	0.181
MA0163.1	MA0163.1	1.7709e-5
MA0164.1	MA0164.1	0.776
MA0258.1	MA0258.1	0.0162
MA0259.1	MA0259.1	0.86

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11797

Novel motif	Logo	P-value
1	1	0.0385
10	10	0.0264
100	100	0.327
101	101	0.991
102	102	0.631
103	103	0.123
104	104	0.174
105	105	0.413
106	106	0.0677
107	107	0.134
108	108	0.804
109	109	8.23403e-4
11	11	0.0278
110	110	0.113
111	111	0.075
112	112	0.356
113	113	0.451
114	114	0.047
115	115	0.85
116	116	0.218
117	117	0.00655
118	118	0.0861
119	119	0.279
12	12	0.796
120	120	0.235
121	121	0.223
122	122	0.68
123	123	0.419
124	124	0.25
125	125	0.526
126	126	0.00179
127	127	0.573
128	128	0.251
129	129	0.72
13	13	7.62631e-4
130	130	0.277
131	131	0.727
132	132	0.562
133	133	0.0101
134	134	0.606
135	135	0.294
136	136	0.00214
137	137	0.607
138	138	0.927
139	139	0.137
14	14	0.818
140	140	0.423
141	141	0.342
142	142	0.435
143	143	0.0442
144	144	0.746
145	145	0.426
146	146	0.758
147	147	0.86
148	148	0.127
149	149	0.199
15	15	0.0492
150	150	0.193
151	151	0.52
152	152	0.0878
153	153	0.619
154	154	0.508
155	155	0.467
156	156	0.865
157	157	0.13
158	158	0.636
159	159	0.971
16	16	0.0223
160	160	0.36
161	161	0.0956
162	162	0.291
163	163	0.82
164	164	0.0145
165	165	0.0372
166	166	0.942
167	167	0.156
168	168	0.277
169	169	0.00656
17	17	0.21
18	18	0.452
19	19	0.147
2	2	0.78
20	20	0.216
21	21	0.103
22	22	0.154
23	23	0.358
24	24	0.0526
25	25	0.372
26	26	0.0102
27	27	0.747
28	28	0.456
29	29	0.00766
3	3	0.0171
30	30	0.735
31	31	0.933
32	32	0.0333
33	33	0.0964
34	34	0.991
35	35	0.659
36	36	0.228
37	37	0.0173
38	38	0.291
39	39	0.258
4	4	0.715
40	40	0.0877
41	41	0.524
42	42	0.163
43	43	0.147
44	44	0.109
45	45	0.86
46	46	0.202
47	47	0.0616
48	48	0.0452
49	49	0.266
5	5	0.21
50	50	0.364
51	51	0.494
52	52	0.495
53	53	0.772
54	54	0.331
55	55	0.205
56	56	0.439
57	57	0.395
58	58	0.181
59	59	0.0968
6	6	0.856
60	60	0.0624
61	61	0.0405
62	62	0.129
63	63	0.155
64	64	0.39
65	65	0.394
66	66	0.459
67	67	0.287
68	68	0.169
69	69	0.866
7	7	0.0322
70	70	0.00577
71	71	0.00653
72	72	0.218
73	73	0.024
74	74	0.495
75	75	0.0227
76	76	0.313
77	77	0.196
78	78	7.02851e-4
79	79	0.357
8	8	0.117
80	80	0.597
81	81	0.648
82	82	0.607
83	83	0.0836
84	84	0.692
85	85	0.273
86	86	0.199
87	87	0.0027
88	88	0.621
89	89	0.247
9	9	0.545
90	90	0.0579
91	91	0.641
92	92	0.541
93	93	0.283
94	94	0.269
95	95	0.00617
96	96	0.657
97	97	0.862
98	98	0.338
99	99	0.945

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11797

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010085 human brain - fetal sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000955 (brain)
0000033 (head)
0000479 (tissue)
0000073 (regional part of nervous system)
0004121 (ectoderm-derived structure)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000480 (anatomical group)
0000923 (germ layer)
0002050 (embryonic structure)
0005423 (developing anatomical structure)
0000467 (anatomical system)
0001062 (anatomical entity)
0005291 (embryonic tissue)
0006598 (presumptive structure)
0002532 (epiblast (generic))
0001017 (central nervous system)
0001016 (nervous system)
0000153 (anterior region of body)
0007811 (craniocervical region)
0000924 (ectoderm)
0006238 (future brain)
0006601 (presumptive ectoderm)

FF: FANTOM5
NA

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 6: / Line 6: @@
 |created_by=
 |creation_date=
+|datafreeze_phase=1
 |def=
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P112,p4@ZNF285!0.48!2.00!ZFP112;;chr19:46806868..46806883,+!p3@HIF3A!0.48!2.00!HIF3A;;chr19:47538560..47538591,+!p2@NPAS1!0.48!2.00!NPAS1;;chr19:47922373..47922384,-!p5@MEIS3!0.48!2.00!MEIS3;;chr19:50529307..50529323,+!p3@ZNF473!0.48!2.00!ZNF473;;chr19:54041508..54041527,+!p8@ZNF331!0.48!2.00!ZNF331;;chr19:54058073..54058088,+!p1@ZNF331!0.48!2.00!ZNF331;;chr19:9609272..9609297,-!p1@ZNF560!0.48!2.00!ZNF560;;chr1:158969727..158969749,+!p11@IFI16!0.48!2.00!IFI16;;chr1:160336851..160336868,+!p1@NHLH1!0.48!2.00!NHLH1;;chr1:164528667..164528674,+!p18@PBX1!0.48!2.00!PBX1;;chr1:164528942..164528964,+!p11@PBX1!0.48!2.00!PBX1;;chr1:164528975..164528998,+!p13@PBX1!0.48!2.00!PBX1;;chr1:164818496..164818503,+!p26@PBX1!0.48!2.00!PBX1;;chr1:165414227..165414242,-!p2@RXRG!0.48!2.00!RXRG;;chr1:167298384..167298412,+!p3@POU2F1!0.48!2.00!POU2F1;;chr1:167298425..167298440,+!p8@POU2F1!0.48!2.00!POU2F1;;chr1:170632527..170632533,+!p32@PRRX1!0.48!2.00!PRRX1;;chr1:214161358..214161377,+!p3@PROX1!0.48!2.00!PROX1;;chr1:214161428..214161437,+!p6@PROX1!0.48!2.00!PROX1;;chr1:214161854..214161892,+!p4@PROX1!0.48!2.00!PROX1;;chr1:216896752..216896778,-!p1@ESRRG!0.48!2.00!ESRRG;;chr1:217251561..217251581,-!p8@ESRRG!0.48!2.00!ESRRG;;chr1:217262933..217262968,-!p3@ESRRG!0.48!2.00!ESRRG;;chr1:217263131..217263207,-!p4@ESRRG!0.48!2.00!ESRRG;;chr1:217263210..217263223,-!p18@ESRRG!0.48!2.00!ESRRG;;chr1:217263899..217263915,-!p15@ESRRG!0.48!2.00!ESRRG;;chr1:2985566..2985608,+!p3@PRDM16!0.48!2.00!PRDM16;;chr1:2985726..2985752,+!p2@PRDM16!0.48!2.00!PRDM16;;chr1:32930647..32930684,+!p1@ZBTB8B,p4@ZBTB8A!0.48!2.00!ZBTB8B;;chr1:3607263..3607274,+!p12@TP73!0.48!2.00!TP73;;chr1:40105299..40105326,-!p1@HEYL!0.48!2.00!HEYL;;chr1:42384322..42384336,-!p5@HIVEP3!0.48!2.00!HIVEP3;;chr1:47695202..47695211,-!p16@TAL1!0.48!2.00!TAL1;;chr1:52991347..52991352,-!p5@ZCCHC11!0.48!2.00!ZCCHC11;;chr1:61547405..61547434,+!p11@NFIA!0.48!2.00!NFIA;;chr1:78415117..78415121,-!p17@FUBP1!0.48!2.00!FUBP1;;chr20:23342653..23342680,+!p3@GZF1!0.48!2.00!GZF1;;chr20:42544761..42544775,+!p6@TOX2!0.48!2.00!TOX2;;chr20:42574529..42574563,+!p3@TOX2!0.48!2.00!TOX2;;chr20:48808064..48808086,+!p15@CEBPB!0.48!2.00!CEBPB;;chr20:50808639..50808661,-!p6@ZFP64!0.48!2.00!ZFP64;;chr20:51589402..51589423,+!p6@TSHZ2!0.48!2.00!TSHZ2;;chr20:62795758..62795784,+!p4@MYT1!0.48!2.00!MYT1;;chr20:656893..656902,-!p8@SCRT2!0.48!2.00!SCRT2;;chr20:657088..657101,-!p6@SCRT2!0.48!2.00!SCRT2;;chr21:30671130..30671140,+!p10@BACH1!0.48!2.00!BACH1;;chr9:137298396..137298431,+!p6@RXRA!0.48!2.00!RXRA;;chrX:84498946..84498955,+!p4@ZNF711!0.48!2.00!ZNF711;;chr9:73028433..73028444,-!p15@KLF9!0.48!2.00!KLF9;;chrX:56259106..56259140,+!p8@KLF8!0.48!2.00!KLF8;;chr9:16728047..16728061,-!p8@BNC2!0.48!2.00!BNC2;;chrY:21906623..21906637,-!p3@KDM5D!0.48!2.00!KDM5D;;chr9:126777688..126777700,+!p6@LHX2!0.48!2.00!LHX2;;chrX:118739782..118739829,-!p2@NKRF!0.48!2.00!NKRF;;chr9:2159800..2159825,+!p15@SMARCA2!0.48!2.00!SMARCA2;;chrX:136648297..136648319,+!p3@ZIC3!0.48!2.00!ZIC3;;chrX:82763261..82763262,+!p4@POU3F4!0.48!2.00!POU3F4;;chrX:56258900..56258917,+!p4@KLF8!0.48!2.00!KLF8;;chrX:134429952..134429971,-!p3@ZNF75D!0.48!2.00!ZNF75D;;chrX:136648807..136648822,+!p8@ZIC3!0.48!2.00!ZIC3;;chrX:76937107..76937132,-!p17@ATRX!0.48!2.00!ATRX;;chrX:147582098..147582127,+!p4@AFF2!0.48!2.00!AFF2;;chr9:135854091..135854159,+!p1@GFI1B!0.48!2.00!GFI1B;;chr5:124081979..124082021,-!p7@ZNF608!0.48!2.00!ZNF608;;chr5:124082470..124082483,-!p8@ZNF608!0.48!2.00!ZNF608;;chr5:124084466..124084484,-!p6@ZNF608!0.48!2.00!ZNF608;;chr5:3595961..3595975,+!p3@IRX1!0.48!2.00!IRX1;;chr5:3595977..3595999,+!p1@IRX1!0.48!2.00!IRX1;;chr5:50679228..50679288,+!p1@ISL1!0.48!2.00!ISL1;;chr5:71803177..71803255,-!p1@ZNF366!0.48!2.00!ZNF366;;

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FF:10085-102B4: Difference between revisions

From FANTOM5_SSTAR

Revision as of 18:38, 29 June 2012

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0