FF:11896-125E6: Difference between revisions

Revision as of 22:18, 9 July 2012

Name:	Hep-2 cells treated with Streptococci strain JRS4, biol_rep3
Species:	Human (Homo sapiens)
Library ID:	{{{library_id}}}
Sample type:	{{{sample_category}}}
Genomic View:	UCSC
CAGEd-oPOSSUM:	link

Additional information

Sample information

strain	NA
tissue	NA
dev stage	NA
sex	male
age	56
cell type	unclassifiable
cell line	Hep-2
company	NA
collaboration	Christine Wells (University of Queensland)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	2c
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

Download raw sequence, BAM & CTSS

Hg19

BAM	CTSS
[{{{hg19bam}}} download]	[{{{hg19ctss}}} donwload]

Hg38

BAM	CTSS
[{{{hg38bam}}} download]	[{{{hg38ctss}}} donwload]

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0366
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0.805
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.486
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.0575
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.211
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.111
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0973
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0775
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.831
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.199
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	-0.0074
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.881
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.543
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.53
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data no result for this sample

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13499

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.244
MA0003.1	MA0003.1	0.779
MA0004.1	MA0004.1	0.109
MA0006.1	MA0006.1	0.478
MA0007.1	MA0007.1	0.687
MA0009.1	MA0009.1	0.512
MA0014.1	MA0014.1	0.566
MA0017.1	MA0017.1	0.13
MA0018.2	MA0018.2	0.714
MA0019.1	MA0019.1	0.892
MA0024.1	MA0024.1	6.35105e-8
MA0025.1	MA0025.1	0.418
MA0027.1	MA0027.1	0.516
MA0028.1	MA0028.1	3.19456e-5
MA0029.1	MA0029.1	0.775
MA0030.1	MA0030.1	0.344
MA0031.1	MA0031.1	0.123
MA0035.2	MA0035.2	0.291
MA0038.1	MA0038.1	0.789
MA0039.2	MA0039.2	0.0577
MA0040.1	MA0040.1	0.703
MA0041.1	MA0041.1	0.366
MA0042.1	MA0042.1	0.485
MA0043.1	MA0043.1	0.19
MA0046.1	MA0046.1	0.902
MA0047.2	MA0047.2	0.716
MA0048.1	MA0048.1	0.129
MA0050.1	MA0050.1	0.0052
MA0051.1	MA0051.1	0.766
MA0052.1	MA0052.1	0.0249
MA0055.1	MA0055.1	1.59644e-4
MA0057.1	MA0057.1	0.173
MA0058.1	MA0058.1	0.0388
MA0059.1	MA0059.1	0.00513
MA0060.1	MA0060.1	0.239
MA0061.1	MA0061.1	0.5
MA0062.2	MA0062.2	0.0137
MA0065.2	MA0065.2	0.0034
MA0066.1	MA0066.1	0.424
MA0067.1	MA0067.1	0.476
MA0068.1	MA0068.1	7.34898e-7
MA0069.1	MA0069.1	0.237
MA0070.1	MA0070.1	0.639
MA0071.1	MA0071.1	0.0161
MA0072.1	MA0072.1	0.508
MA0073.1	MA0073.1	0.526
MA0074.1	MA0074.1	0.446
MA0076.1	MA0076.1	1.95894e-4
MA0077.1	MA0077.1	0.659
MA0078.1	MA0078.1	0.286
MA0079.2	MA0079.2	0.249
MA0080.2	MA0080.2	5.82923e-7
MA0081.1	MA0081.1	0.45
MA0083.1	MA0083.1	0.0193
MA0084.1	MA0084.1	0.187
MA0087.1	MA0087.1	0.237
MA0088.1	MA0088.1	0.0363
MA0090.1	MA0090.1	0.0269
MA0091.1	MA0091.1	0.536
MA0092.1	MA0092.1	0.549
MA0093.1	MA0093.1	0.0699
MA0099.2	MA0099.2	0.92
MA0100.1	MA0100.1	0.385
MA0101.1	MA0101.1	0.459
MA0102.2	MA0102.2	0.459
MA0103.1	MA0103.1	0.0129
MA0104.2	MA0104.2	5.88423e-4
MA0105.1	MA0105.1	0.467
MA0106.1	MA0106.1	0.428
MA0107.1	MA0107.1	0.188
MA0108.2	MA0108.2	0.0641
MA0111.1	MA0111.1	0.611
MA0112.2	MA0112.2	0.00165
MA0113.1	MA0113.1	0.796
MA0114.1	MA0114.1	0.0031
MA0115.1	MA0115.1	0.0136
MA0116.1	MA0116.1	0.122
MA0117.1	MA0117.1	0.631
MA0119.1	MA0119.1	0.388
MA0122.1	MA0122.1	0.924
MA0124.1	MA0124.1	0.955
MA0125.1	MA0125.1	0.695
MA0131.1	MA0131.1	0.42
MA0135.1	MA0135.1	0.543
MA0136.1	MA0136.1	0.0125
MA0137.2	MA0137.2	0.00796
MA0138.2	MA0138.2	0.207
MA0139.1	MA0139.1	0.451
MA0140.1	MA0140.1	0.847
MA0141.1	MA0141.1	3.13853e-4
MA0142.1	MA0142.1	0.942
MA0143.1	MA0143.1	0.131
MA0144.1	MA0144.1	0.348
MA0145.1	MA0145.1	0.791
MA0146.1	MA0146.1	0.198
MA0147.1	MA0147.1	1.71582e-4
MA0148.1	MA0148.1	0.124
MA0149.1	MA0149.1	0.0141
MA0150.1	MA0150.1	0.797
MA0152.1	MA0152.1	0.432
MA0153.1	MA0153.1	0.104
MA0154.1	MA0154.1	0.788
MA0155.1	MA0155.1	0.373
MA0156.1	MA0156.1	0.163
MA0157.1	MA0157.1	0.134
MA0159.1	MA0159.1	0.0299
MA0160.1	MA0160.1	0.00129
MA0162.1	MA0162.1	0.124
MA0163.1	MA0163.1	0.00328
MA0164.1	MA0164.1	0.277
MA0258.1	MA0258.1	0.229
MA0259.1	MA0259.1	0.0286

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13499

Novel motif	Logo	P-value
1	1	0.0294
10	10	0.0469
100	100	0.0409
101	101	0.276
102	102	0.911
103	103	0.493
104	104	0.851
105	105	0.174
106	106	0.0967
107	107	0.184
108	108	0.783
109	109	0.00111
11	11	0.468
110	110	0.228
111	111	0.272
112	112	0.779
113	113	0.00478
114	114	0.187
115	115	0.524
116	116	0.218
117	117	0.11
118	118	0.0822
119	119	0.255
12	12	0.477
120	120	0.0145
121	121	0.352
122	122	0.152
123	123	0.063
124	124	0.771
125	125	0.505
126	126	0.564
127	127	0.101
128	128	0.00115
129	129	0.693
13	13	2.64397e-4
130	130	0.765
131	131	0.175
132	132	0.95
133	133	0.119
134	134	0.878
135	135	0.316
136	136	0.00925
137	137	0.292
138	138	0.605
139	139	0.263
14	14	0.34
140	140	0.596
141	141	0.0561
142	142	0.868
143	143	0.615
144	144	0.571
145	145	0.24
146	146	0.996
147	147	0.579
148	148	0.392
149	149	0.678
15	15	0.255
150	150	0.466
151	151	0.863
152	152	0.662
153	153	0.517
154	154	0.285
155	155	0.183
156	156	0.0145
157	157	0.116
158	158	0.356
159	159	0.277
16	16	0.503
160	160	0.337
161	161	0.228
162	162	0.886
163	163	0.32
164	164	0.0205
165	165	0.9
166	166	0.0181
167	167	0.111
168	168	0.704
169	169	0.143
17	17	0.789
18	18	0.54
19	19	0.794
2	2	0.612
20	20	0.0942
21	21	0.13
22	22	0.928
23	23	0.0142
24	24	0.233
25	25	0.219
26	26	0.41
27	27	0.87
28	28	0.912
29	29	0.0066
3	3	0.879
30	30	0.394
31	31	0.696
32	32	0.187
33	33	0.141
34	34	0.267
35	35	0.789
36	36	0.0479
37	37	0.223
38	38	0.571
39	39	0.833
4	4	0.239
40	40	0.00591
41	41	0.346
42	42	0.765
43	43	0.896
44	44	0.0348
45	45	0.301
46	46	0.908
47	47	0.158
48	48	0.388
49	49	0.499
5	5	0.584
50	50	0.932
51	51	0.869
52	52	0.342
53	53	0.217
54	54	0.607
55	55	0.0609
56	56	0.788
57	57	0.286
58	58	0.703
59	59	0.82
6	6	0.877
60	60	0.879
61	61	0.0294
62	62	0.59
63	63	0.42
64	64	0.692
65	65	0.761
66	66	0.843
67	67	0.734
68	68	0.597
69	69	0.885
7	7	0.0194
70	70	0.851
71	71	0.00993
72	72	0.841
73	73	0.352
74	74	0.249
75	75	0.0986
76	76	0.175
77	77	0.294
78	78	0.1
79	79	0.937
8	8	0.0313
80	80	0.0559
81	81	0.522
82	82	0.301
83	83	0.439
84	84	0.352
85	85	0.0874
86	86	0.921
87	87	0.0068
88	88	0.989
89	89	0.513
9	9	0.72
90	90	0.0278
91	91	0.0082
92	92	0.37
93	93	0.207
94	94	0.805
95	95	0.011
96	96	0.593
97	97	0.888
98	98	0.712
99	99	0.705

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13499

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011134 human Hep-2 cells treated with Streptococci strain JRS4 sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000255 (eukaryotic cell)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001737 (larynx)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000072 (segment of respiratory tract)
0010317 (germ layer / neural crest derived structure)
0000065 (respiratory tract)
0001004 (respiratory system)
0001557 (upper respiratory tract)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0000350 (experimentally modified sample)
0000632 (group A streptococci treatment sample)
0104978 (HEp-2 cell sample)
0000639 (Streptococcus strain JRS4 treatment sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0011134 (human Hep-2 cells treated with Streptococci strain JRS4 sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0008947 (respiratory primordium)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 10: / Line 10: @@
 |def=
 |expression_enrichment_score=chr6:10415276..10415341,-!p2@TFAP2A!1.56!43.09!TFAP2A;;chr1:201979743..201979762,+!p1@ELF3!1.52!32.32!ELF3;;chr2:238592039..238592054,+!p4@LRRFIP1!1.51!31.55!LRRFIP1;;chr6:10415484..10415508,-!p3@TFAP2A!1.44!26.55!TFAP2A;;chr5:134369905..134369972,-!p1@PITX1!1.39!35.78!PITX1;;chr6:126240380..126240430,+!p2@NCOA7!1.37!56.56!NCOA7;;chr12:52445218..52445237,+!p1@NR4A1!1.35!262.78!NR4A1;;chr6:10412600..10412637,-!p1@TFAP2A!1.35!35.01!TFAP2A;;chr5:134369879..134369898,-!p2@PITX1!1.31!19.24!PITX1;;chr6:126240442..126240459,+!p4@NCOA7!1.28!22.70!NCOA7;;chr1:201979703..201979721,+!p2@ELF3!1.20!15.01!ELF3;;chr6:1312325..1312340,+!p1@FOXQ1!1.19!23.85!FOXQ1;;chr6:126240463..126240489,+!p6@NCOA7!1.18!15.77!NCOA7;;chr12:54380036..54380091,+!p4@HOXC10!1.07!10.77!HOXC10;;chr12:54380404..54380433,+!p3@HOXC10!1.06!10.39!HOXC10;;chr22:19748231..19748317,+!p1@TBX1!1.06!10.39!TBX1;;chr5:170736243..170736279,+!p1@TLX3!1.06!10.39!TLX3;;chr17:46687959..46688007,-!p2@HOXB7!1.05!14.24!HOXB7;;chr9:100615499..100615519,+!p1@FOXE1!1.03!9.62!FOXE1;;chr1:44513995..44514031,+!p1@KLF17!1.03!9.62!KLF17;;chr18:55102598..55102623,+!p1@ONECUT2!1.01!9.23!ONECUT2;;chr18:55102628..55102646,+!p2@ONECUT2!0.98!8.46!ONECUT2;;chrX:131624056..131624069,-!p2@MBNL3!0.96!11.16!MBNL3;;chr6:126240356..126240379,+!p7@NCOA7!0.96!10.00!NCOA7;;chr7:101917447..101917479,+!p4@CUX1!0.96!8.08!CUX1;;chr7:101917482..101917507,+!p6@CUX1!0.94!7.69!CUX1;;chr12:72056800..72056834,+!p1@THAP2!0.92!10.00!THAP2;;chr17:7492684..7492778,-!p2@SOX15!0.91!15.39!SOX15;;chr10:104155659..104155676,+!p4@NFKB2!0.90!8.85!NFKB2;;chr6:10412392..10412409,-!p4@TFAP2A!0.90!8.08!TFAP2A;;chr13:73633131..73633149,+!p1@KLF5!0.88!73.87!KLF5;;chr6:10412576..10412599,-!p5@TFAP2A!0.88!6.54!TFAP2A;;chr17:17726907..17726958,-!p2@SREBF1!0.87!41.94!SREBF1;;chr3:69915385..69915438,+!p3@MITF!0.85!6.16!MITF;;chr9:102584262..102584276,+!p1@NR4A3!0.83!13.47!NR4A3;;chr6:1389789..1389821,+!p1@FOXF2!0.83!8.08!FOXF2;;chr11:34663913..34663945,+!p6@EHF!0.83!5.77!EHF;;chr5:321810..321877,+!p1@AHRR!0.82!18.85!AHRR;;chr20:6748325..6748352,+!p1@BMP2!0.81!8.08!BMP2;;chr21:38071430..38071456,+!p1@SIM2!0.81!5.39!SIM2;;chr7:101917407..101917443,+!p3@CUX1!0.81!5.39!CUX1;;chr7:27224842..27224872,-!p1@HOXA11!0.81!5.39!HOXA11;;chr12:54379029..54379057,+!p2@HOXC10!0.81!5.39!HOXC10;;chrX:70503529..70503549,+!p2@NONO!0.80!30.78!NONO;;chr1:8934931..8934947,-!p4@ENO1!0.80!18.85!ENO1;;chr12:72056773..72056796,+!p3@THAP2!0.79!6.93!THAP2;;chr9:102584159..102584174,+!p2@NR4A3!0.78!9.62!NR4A3;;chr8:55370487..55370503,+!p1@SOX17!0.78!5.00!SOX17;;chr10:28034739..28034756,-!p1@MKX!0.78!5.00!MKX;;chr12:54378923..54378966,+!p1@HOXC10!0.78!5.00!HOXC10;;chr1:151804244..151804310,-!p1@RORC!0.78!5.00!RORC;;chr17:46682321..46682362,-!p1@HOXB6!0.78!5.00!HOXB6;;chrX:131623044..131623089,-!p1@MBNL3!0.77!22.32!MBNL3;;chr16:29818199..29818216,+!p11@MAZ!0.77!8.46!MAZ;;chr1:45805872..45805900,+!p2@TOE1!0.76!12.31!TOE1;;chr1:8938709..8938720,-!p3@ENO1!0.75!247.39!ENO1;;chr20:42295745..42295765,+!p1@MYBL2!0.75!84.64!MYBL2;;chr17:8027418..8027432,-!p1@HES7!0.75!4.62!HES7;;chr12:3068544..3068597,+!p1@TEAD4!0.74!30.01!TEAD4;;chr6:31126291..31126399,+!p1@TCF19!0.73!46.17!TCF19;;chr12:7079780..7079791,-!p2@PHB2!0.72!24.62!PHB2;;chrX:107019163..107019179,-!p7@TSC22D3!0.72!5.00!TSC22D3;;chr12:54380112..54380126,+!p5@HOXC10!0.72!4.23!HOXC10;;chr2:157189180..157189290,-!p1@NR4A2!0.71!24.24!NR4A2;;chr1:935398..935465,-!p2@HES4!0.71!9.23!HES4;;chr20:42295713..42295738,+!p2@MYBL2!0.70!26.55!MYBL2;;chr10:51572408..51572454,+!p3@NCOA4!0.70!26.16!NCOA4;;chr3:12330560..12330579,+!p1@PPARG!0.69!4.62!PPARG;;chr2:45236540..45236577,-!p1@SIX2!0.69!3.85!SIX2;;chr3:128207349..128207386,-!p3@GATA2!0.69!3.85!GATA2;;chr3:69915369..69915381,+!p4@MITF!0.69!3.85!MITF;;chr9:126774018..126774055,+!p1@LHX2!0.69!3.85!LHX2;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.69!3.85!SEBOX;;chr3:128206762..128206781,-!p2@GATA2!0.66!25.78!GATA2;;chr2:172967621..172967637,-!p1@DLX2!0.66!10.77!DLX2;;chr17:41277372..41277418,-!p1@BRCA1!0.65!14.24!BRCA1;;chr6:10420285..10420304,-!p18@TFAP2A!0.65!3.46!TFAP2A;;chr11:34664014..34664045,+!p4@EHF!0.65!3.46!EHF;;chr12:54379477..54379498,+!p5@HOXC5!0.65!3.46!HOXC5;;chr12:2986275..2986363,-!p1@FOXM1!0.64!39.24!FOXM1;;chr22:42229210..42229229,+!p3@SREBF2!0.64!8.85!SREBF2;;chr1:8939265..8939367,-!p5@ENO1!0.64!7.69!ENO1;;chr2:46524897..46524911,+!p2@EPAS1!0.63!10.39!EPAS1;;chr10:35484053..35484076,+!p1@CREM!0.62!8.85!CREM;;chrX:107018969..107019024,-!p6@TSC22D3!0.62!4.62!TSC22D3;;chrX:131622958..131622978,-!p3@MBNL3!0.62!4.23!MBNL3;;chr16:29818160..29818188,+!p6@MAZ!0.61!16.93!MAZ;;chr3:141087393..141087426,+!p3@ZBTB38!0.61!14.24!ZBTB38;;chr17:46687935..46687950,-!p3@HOXB7!0.61!3.08!HOXB7;;chr17:46806067..46806097,-!p1@HOXB13!0.61!3.08!HOXB13;;chr17:7493405..7493419,-!p1@SOX15!0.61!3.08!SOX15;;chrX:131623026..131623039,-!p5@MBNL3!0.61!3.08!MBNL3;;chr12:52448420..52448460,+!p5@NR4A1!0.61!3.08!NR4A1;;chr12:54332608..54332636,+!p1@HOXC13!0.61!3.08!HOXC13;;chr12:54379136..54379150,+!p4@HOXC5!0.61!3.08!HOXC5;;chr5:170736216..170736238,+!p2@TLX3!0.61!3.08!TLX3;;chr8:145669791..145669834,-!p1@TONSL!0.60!10.00!TONSL;;chr18:45457909..45457939,-!p8@SMAD2!0.60!3.85!SMAD2;;chr12:80084737..80084763,-!p3@PAWR!0.59!12.70!PAWR;;chr17:41623692..41623715,-!p1@ETV4!0.58!14.24!ETV4;;chr6:20402102..20402152,+!p1@E2F3!0.58!13.85!E2F3;;chr11:3400340..3400422,-!p1@ZNF195!0.57!53.48!ZNF195;;chr1:161736038..161736056,+!p4@ATF6!0.57!7.31!ATF6;;chr17:46688334..46688385,-!p1@HOXB7!0.57!4.23!HOXB7;;chr20:51588873..51588953,+!p1@TSHZ2!0.57!3.85!TSHZ2;;chrX:131624020..131624048,-!p9@MBNL3!0.57!3.46!MBNL3;;chr15:67418119..67418162,+!p5@SMAD3!0.57!3.08!SMAD3;;chr12:72056749..72056767,+!p6@THAP2!0.57!3.08!THAP2;;chr12:52448213..52448262,+!p6@NR4A1!0.57!2.69!NR4A1;;chr12:54393880..54393962,+!p1@HOXC9!0.57!2.69!HOXC9;;chr19:54041669..54041697,+!p2@ZNF331!0.57!2.69!ZNF331;;chr6:126240490..126240501,+!p11@NCOA7!0.57!2.69!NCOA7;;chr1:164528410..164528428,+!p1@PBX1!0.56!24.62!PBX1;;chr20:32274179..32274213,-!p1@E2F1!0.56!21.55!E2F1;;chrX:131623982..131624011,-!p6@MBNL3!0.56!4.23!MBNL3;;chr15:67418047..67418093,+!p4@SMAD3!0.55!3.46!SMAD3;;chr12:115121962..115121987,-!p1@TBX3!0.52!25.01!TBX3;;chr20:32274150..32274166,-!p2@E2F1!0.52!5.00!E2F1;;chr15:90294062..90294079,-!p2@MESP1!0.52!2.31!MESP1;;chr17:36105074..36105086,-!p2@HNF1B!0.52!2.31!HNF1B;;chr17:46806098..46806118,-!p3@HOXB13!0.52!2.31!HOXB13;;chr19:12348371..12348386,-!p5@ZNF44!0.52!2.31!ZNF44;;chr19:3574157..3574180,+!p4@HMG20B!0.52!2.31!HMG20B;;chr5:134369973..134369984,-!p3@PITX1!0.52!2.31!PITX1;;chr6:10412477..10412490,-!p10@TFAP2A!0.52!2.31!TFAP2A;;chr6:10419824..10419840,-!p9@TFAP2A!0.52!2.31!TFAP2A;;chr12:19592405..19592492,+!p2@AEBP2!0.51!25.01!AEBP2;;chr10:35415951..35415975,+!p8@CREM!0.51!3.46!CREM;;chr3:141087339..141087387,+!p2@ZBTB38!0.50!28.86!ZBTB38;;chr2:75937794..75937867,-!p2@GCFC2!0.50!5.77!GCFC2;;chr1:8938736..8938756,-!p1@ENO1!0.49!3076.05!ENO1;;chr11:47279504..47279563,+!p1@NR1H3!0.49!5.77!NR1H3;;chr8:67525443..67525459,-!p2@MYBL1!0.49!3.46!MYBL1;;chr6:43138999..43139017,+!p2@SRF!0.48!15.77!SRF;;chr17:47492252..47492265,-!p2@PHB!0.48!10.77!PHB;;chr18:47814010..47814021,-!p3@CXXC1!0.48!3.85!CXXC1;;chr2:85981222..85981259,+!p2@ATOH8!0.48!3.85!ATOH8;;chr1:8926441..8926473,-!p10@ENO1!0.48!3.46!ENO1;;chr1:23885981..23886002,-!p1@ID3!0.47!473.24!ID3;;chr5:34929677..34929789,+!p1@DNAJC21!0.47!78.10!DNAJC21;;chr1:23857698..23857733,-!p1@E2F2!0.47!4.23!E2F2;;chr2:239756739..239756755,+!p2@TWIST2!0.47!3.85!TWIST2;;chr17:17726892..17726903,-!p6@SREBF1!0.47!2.31!SREBF1;;chr17:48045917..48045977,+!p1@DLX4!0.47!1.92!DLX4;;chr17:48072574..48072597,-!p1@DLX3!0.47!1.92!DLX3;;chr2:63277948..63277974,+!p1@OTX1!0.47!1.92!OTX1;;chr3:138665937..138665968,-!p1@FOXL2!0.47!1.92!FOXL2;;chr10:104155680..104155687,+!p6@NFKB2!0.47!1.92!NFKB2;;chr12:3068634..3068656,+!p5@TEAD4!0.47!1.92!TEAD4;;chr12:51158359..51158395,+!p4@ATF1!0.47!1.92!ATF1;;chr12:54366975..54367001,+!p1@HOXC11!0.47!1.92!HOXC11;;chr12:54394416..54394467,+!p5@HOXC9!0.47!1.92!HOXC9;;chr14:37051798..37051831,-!p1@NKX2-8!0.47!1.92!NKX2-8;;chr5:134369643..134369675,-!p4@PITX1!0.47!1.92!PITX1;;chr6:10415263..10415274,-!p8@TFAP2A!0.47!1.92!TFAP2A;;chr6:126240542..126240553,+!p14@NCOA7!0.47!1.92!NCOA7;;chr6:1389989..1390019,+!p2@FOXF2!0.47!1.92!FOXF2;;chr7:27239740..27239759,-!p2@HOXA13!0.47!1.92!HOXA13;;chr7:73038839..73038862,-!p1@MLXIPL!0.47!1.92!MLXIPL;;chr9:102584278..102584285,+!p5@NR4A3!0.47!1.92!NR4A3;;chr14:55493763..55493824,-!p1@WDHD1!0.46!19.24!WDHD1;;chr10:104155480..104155534,+!p2@NFKB2!0.46!16.54!NFKB2;;chr18:45457423..45457468,-!p5@SMAD2!0.46!9.23!SMAD2;;chr1:23857325..23857416,-!p2@E2F2!0.46!2.31!E2F2;;chr6:20402070..20402082,+!p5@E2F3!0.46!2.31!E2F3;;chr16:29817789..29817838,+!p2@MAZ!0.44!33.86!MAZ;;chr2:178128149..178128198,-!p2@NFE2L2!0.44!12.70!NFE2L2;;chr1:45805813..45805859,+!p1@TOE1!0.44!10.77!TOE1;;chr12:3069037..3069119,+!p2@TEAD4!0.44!8.08!TEAD4;;chr2:239756671..239756732,+!p1@TWIST2!0.44!7.31!TWIST2;;chr8:67525473..67525518,-!p1@MYBL1!0.44!5.00!MYBL1;;chr1:249132462..249132481,+!p6@ZNF672!0.44!3.46!ZNF672;;chr1:212782094..212782109,+!p1@ATF3!0.43!66.56!ATF3;;chr6:144329384..144329405,-!p1@PLAGL1!0.43!27.70!PLAGL1;;chr19:45908292..45908374,-!p1@PPP1R13L!0.43!21.16!PPP1R13L;;chr14:62213827..62213853,+!p6@HIF1A!0.43!2.69!HIF1A;;chr9:99180662..99180690,-!p2@ZNF367!0.43!2.69!ZNF367;;chr2:74375081..74375092,-!p2@BOLA3!0.42!4.23!BOLA3;;chr3:24536253..24536328,-!p1@THRB!0.42!3.85!THRB;;chr4:87857474..87857489,+!p7@AFF1!0.42!3.46!AFF1;;chrX:70504244..70504278,+!p4@NONO!0.42!3.08!NONO;;chr16:54320101..54320125,-!p4@IRX3!0.42!2.69!IRX3;;chr16:54964740..54964789,+!p1@IRX5!0.42!2.69!IRX5;;chr16:54320617..54320643,-!p3@IRX3!0.42!2.31!IRX3;;chr7:1577111..1577132,+!p4@MAFK!0.42!1.92!MAFK;;chr12:2986206..2986258,-!p2@FOXM1!0.41!13.47!FOXM1;;chr16:1429627..1429662,-!p2@UNKL!0.41!6.16!UNKL;;chr1:8923998..8924033,-!p8@ENO1!0.41!3.46!ENO1;;chr11:3400442..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+|ffid_belonging_in_development=UBERON:0008947,UBERON:0002532,UBERON:0006595,UBERON:0010316
 |fonse_cell_line=FF:0101120
 |fonse_cell_line_closure=FF:0101120

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FF:11896-125E6: Difference between revisions

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Revision as of 22:18, 9 July 2012

	FAQ
	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0