Personal tools

FF:11376-118A8: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 1: Line 1:
{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@DRS007988
|DRA_sample_Accession=CAGE@DRS007988
|accession_numbers=CAGE;DRX008095;DRR008967;DRZ000392;DRZ001777
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000310,UBERON:0002100,UBERON:0002384,UBERON:0000479,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0001062,UBERON:0009569,UBERON:0001443,UBERON:0000915
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000310,UBERON:0002100,UBERON:0002384,UBERON:0000479,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0001062,UBERON:0009569,UBERON:0001443,UBERON:0000915
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000325,CL:0000255,CL:0000136,CL:0002617
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000325,CL:0000255,CL:0000136,CL:0002617
Line 42: Line 43:
|is_a=EFO:0002091;;FF:0000156
|is_a=EFO:0002091;;FF:0000156
|is_obsolete=
|is_obsolete=
|library_id=CNhs11051
|library_ids=CNhs11051
|library_ids=CNhs11051
|name=Adipocyte - breast, donor1
|name=Adipocyte - breast, donor1
Line 87: Line 89:
|top_motifs=FOXL1:2.44857995996;TEF:2.2853552035;IKZF1:2.19893417035;NKX2-2,8:2.14044658298;GZF1:2.09667233834;ZNF238:1.88576606873;ESR1:1.81200768955;HES1:1.77862451678;HIF1A:1.71679768298;NKX3-1:1.71075810606;MAFB:1.66734976871;UFEwm:1.66081209283;TAL1_TCF{3,4,12}:1.65069080877;EVI1:1.62682177464;TEAD1:1.54640712617;MYBL2:1.54551132324;ATF6:1.51029087385;SRF:1.48711073098;PAX1,9:1.42345819977;NR3C1:1.40830198765;HMX1:1.33725660084;TFAP4:1.28448297605;TP53:1.27191073317;NFE2L1:1.24775684799;GLI1..3:1.24640844467;HMGA1,2:1.24488678812;NFATC1..3:1.23260929295;HOX{A4,D4}:1.20383971338;XBP1:1.19604638178;LHX3,4:1.11023935361;ZNF423:1.09557734321;SPZ1:1.08658536209;GCM1,2:1.07664342086;MTE{core}:1.05200844295;EBF1:1.0117653197;AR:0.974512950911;HBP1_HMGB_SSRP1_UBTF:0.962156964996;HOX{A6,A7,B6,B7}:0.950220466273;FOXO1,3,4:0.931949798801;TLX1..3_NFIC{dimer}:0.9204347918;ALX4:0.883674424914;MAZ:0.882560494696;GATA4:0.863790675276;SMAD1..7,9:0.821239330496;ARID5B:0.801255370182;RXRA_VDR{dimer}:0.79009699949;KLF4:0.776170043982;RXR{A,B,G}:0.774051995893;HOX{A5,B5}:0.769977522574;TFCP2:0.752030739771;EN1,2:0.742350226853;FOXA2:0.736532082752;NHLH1,2:0.721889413814;DBP:0.674556316918;TFAP2B:0.659276980694;POU6F1:0.608579019805;GTF2I:0.606207018638;NFIX:0.605467212344;GFI1B:0.589057356222;SOX5:0.586892264794;TBP:0.573163740862;MTF1:0.570010798291;NKX2-1,4:0.55687699211;HIC1:0.55164624518;NANOG{mouse}:0.551448666369;STAT1,3:0.541394490901;GTF2A1,2:0.49322586052;bHLH_family:0.488292152415;PAX5:0.452330436835;PAX4:0.430872139174;ZNF148:0.4176967913;HAND1,2:0.412223065942;ZNF384:0.406655102367;HSF1,2:0.375915277822;STAT2,4,6:0.36681509065;NR6A1:0.365785629613;NR1H4:0.363619862158;CDC5L:0.35025701155;MEF2{A,B,C,D}:0.343755499242;HLF:0.33439926547;MZF1:0.306197159137;NKX3-2:0.294511851107;TFAP2{A,C}:0.282629705031;PATZ1:0.255341481287;MYFfamily:0.230439427804;TBX4,5:0.211368264393;NKX2-3_NKX2-5:0.209103238499;AIRE:0.18317528321;MYB:0.17550355233;TGIF1:0.154809980761;NFE2L2:0.14619081072;REST:0.0770022280542;FOX{D1,D2}:0.051961789839;RREB1:0.0485006341055;SREBF1,2:0.0318682794963;ZBTB6:0.00643380881048;T:0.0063176447474;HNF1A:-0.000165590646003;ZIC1..3:-0.00631719377691;XCPE1{core}:-0.0115092459664;HNF4A_NR2F1,2:-0.012320074127;SOX17:-0.0399011332353;FOX{I1,J2}:-0.0409372437185;ADNP_IRX_SIX_ZHX:-0.0426091387732;NFIL3:-0.0521444296317;STAT5{A,B}:-0.0558062618852;PRDM1:-0.066955477804;IRF1,2:-0.0692226222157;TLX2:-0.0764340213984;PAX6:-0.104066300128;POU3F1..4:-0.115409763537;CEBPA,B_DDIT3:-0.117685963967;ELK1,4_GABP{A,B1}:-0.124556653221;PPARG:-0.12994861718;YY1:-0.15155697158;FOXM1:-0.160351528137;FOXD3:-0.169946452486;SOX2:-0.221397076974;BACH2:-0.234700503581;FOSL2:-0.243410936973;DMAP1_NCOR{1,2}_SMARC:-0.247884685711;ZNF143:-0.249510998604;EP300:-0.274580161186;AHR_ARNT_ARNT2:-0.276082972262;FOS_FOS{B,L1}_JUN{B,D}:-0.276646451721;MED-1{core}:-0.279510796979;BPTF:-0.28461445815;EGR1..3:-0.288457085866;PAX2:-0.314802146524;LEF1_TCF7_TCF7L1,2:-0.319087266742;NFE2:-0.333503792291;IKZF2:-0.393331983976;ONECUT1,2:-0.397930087953;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.406160546799;ETS1,2:-0.407097249187;ESRRA:-0.41803044189;JUN:-0.431625437187;ZBTB16:-0.434303748646;FOXP3:-0.439922435403;TOPORS:-0.440427620003;NRF1:-0.449615136847;TFDP1:-0.472577439441;ELF1,2,4:-0.490199962366;RUNX1..3:-0.510428937835;SP1:-0.520112841618;GFI1:-0.523788238136;ZFP161:-0.527306745631;CREB1:-0.531216110818;POU5F1:-0.532283295239;PDX1:-0.545025490806;SPI1:-0.550827995374;ATF5_CREB3:-0.55667642355;FOXP1:-0.561335393706;SPIB:-0.574519704743;PRRX1,2:-0.577959039425;NKX6-1,2:-0.587001778223;RBPJ:-0.595597872865;OCT4_SOX2{dimer}:-0.60688909453;RFX1:-0.625118372794;PAX8:-0.640268368919;NFKB1_REL_RELA:-0.668862010667;VSX1,2:-0.674570618043;NR5A1,2:-0.685437660443;IRF7:-0.706770307954;ATF4:-0.716411170048;RFX2..5_RFXANK_RFXAP:-0.750559267637;POU1F1:-0.768647654845;CDX1,2,4:-0.774855162446;GATA6:-0.775039729236;PITX1..3:-0.79152045586;ATF2:-0.794399077545;BREu{core}:-0.800149932141;CRX:-0.806533678424;FOXN1:-0.808812782626;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.857052927489;RORA:-0.884331290882;SNAI1..3:-0.900620053797;ZEB1:-0.904700153275;HOXA9_MEIS1:-0.951037883762;NFY{A,B,C}:-0.98611050117;E2F1..5:-1.05189777516;LMO2:-1.11536538557;CUX2:-1.12017271134;SOX{8,9,10}:-1.13079009298;ALX1:-1.1574039618;PAX3,7:-1.19858572485;NANOG:-1.2489285114;FOX{F1,F2,J1}:-1.26504587995;MYOD1:-1.42740110229;FOXQ1:-1.4581774156;POU2F1..3:-1.61077801631;PBX1:-1.94160340956
|top_motifs=FOXL1:2.44857995996;TEF:2.2853552035;IKZF1:2.19893417035;NKX2-2,8:2.14044658298;GZF1:2.09667233834;ZNF238:1.88576606873;ESR1:1.81200768955;HES1:1.77862451678;HIF1A:1.71679768298;NKX3-1:1.71075810606;MAFB:1.66734976871;UFEwm:1.66081209283;TAL1_TCF{3,4,12}:1.65069080877;EVI1:1.62682177464;TEAD1:1.54640712617;MYBL2:1.54551132324;ATF6:1.51029087385;SRF:1.48711073098;PAX1,9:1.42345819977;NR3C1:1.40830198765;HMX1:1.33725660084;TFAP4:1.28448297605;TP53:1.27191073317;NFE2L1:1.24775684799;GLI1..3:1.24640844467;HMGA1,2:1.24488678812;NFATC1..3:1.23260929295;HOX{A4,D4}:1.20383971338;XBP1:1.19604638178;LHX3,4:1.11023935361;ZNF423:1.09557734321;SPZ1:1.08658536209;GCM1,2:1.07664342086;MTE{core}:1.05200844295;EBF1:1.0117653197;AR:0.974512950911;HBP1_HMGB_SSRP1_UBTF:0.962156964996;HOX{A6,A7,B6,B7}:0.950220466273;FOXO1,3,4:0.931949798801;TLX1..3_NFIC{dimer}:0.9204347918;ALX4:0.883674424914;MAZ:0.882560494696;GATA4:0.863790675276;SMAD1..7,9:0.821239330496;ARID5B:0.801255370182;RXRA_VDR{dimer}:0.79009699949;KLF4:0.776170043982;RXR{A,B,G}:0.774051995893;HOX{A5,B5}:0.769977522574;TFCP2:0.752030739771;EN1,2:0.742350226853;FOXA2:0.736532082752;NHLH1,2:0.721889413814;DBP:0.674556316918;TFAP2B:0.659276980694;POU6F1:0.608579019805;GTF2I:0.606207018638;NFIX:0.605467212344;GFI1B:0.589057356222;SOX5:0.586892264794;TBP:0.573163740862;MTF1:0.570010798291;NKX2-1,4:0.55687699211;HIC1:0.55164624518;NANOG{mouse}:0.551448666369;STAT1,3:0.541394490901;GTF2A1,2:0.49322586052;bHLH_family:0.488292152415;PAX5:0.452330436835;PAX4:0.430872139174;ZNF148:0.4176967913;HAND1,2:0.412223065942;ZNF384:0.406655102367;HSF1,2:0.375915277822;STAT2,4,6:0.36681509065;NR6A1:0.365785629613;NR1H4:0.363619862158;CDC5L:0.35025701155;MEF2{A,B,C,D}:0.343755499242;HLF:0.33439926547;MZF1:0.306197159137;NKX3-2:0.294511851107;TFAP2{A,C}:0.282629705031;PATZ1:0.255341481287;MYFfamily:0.230439427804;TBX4,5:0.211368264393;NKX2-3_NKX2-5:0.209103238499;AIRE:0.18317528321;MYB:0.17550355233;TGIF1:0.154809980761;NFE2L2:0.14619081072;REST:0.0770022280542;FOX{D1,D2}:0.051961789839;RREB1:0.0485006341055;SREBF1,2:0.0318682794963;ZBTB6:0.00643380881048;T:0.0063176447474;HNF1A:-0.000165590646003;ZIC1..3:-0.00631719377691;XCPE1{core}:-0.0115092459664;HNF4A_NR2F1,2:-0.012320074127;SOX17:-0.0399011332353;FOX{I1,J2}:-0.0409372437185;ADNP_IRX_SIX_ZHX:-0.0426091387732;NFIL3:-0.0521444296317;STAT5{A,B}:-0.0558062618852;PRDM1:-0.066955477804;IRF1,2:-0.0692226222157;TLX2:-0.0764340213984;PAX6:-0.104066300128;POU3F1..4:-0.115409763537;CEBPA,B_DDIT3:-0.117685963967;ELK1,4_GABP{A,B1}:-0.124556653221;PPARG:-0.12994861718;YY1:-0.15155697158;FOXM1:-0.160351528137;FOXD3:-0.169946452486;SOX2:-0.221397076974;BACH2:-0.234700503581;FOSL2:-0.243410936973;DMAP1_NCOR{1,2}_SMARC:-0.247884685711;ZNF143:-0.249510998604;EP300:-0.274580161186;AHR_ARNT_ARNT2:-0.276082972262;FOS_FOS{B,L1}_JUN{B,D}:-0.276646451721;MED-1{core}:-0.279510796979;BPTF:-0.28461445815;EGR1..3:-0.288457085866;PAX2:-0.314802146524;LEF1_TCF7_TCF7L1,2:-0.319087266742;NFE2:-0.333503792291;IKZF2:-0.393331983976;ONECUT1,2:-0.397930087953;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.406160546799;ETS1,2:-0.407097249187;ESRRA:-0.41803044189;JUN:-0.431625437187;ZBTB16:-0.434303748646;FOXP3:-0.439922435403;TOPORS:-0.440427620003;NRF1:-0.449615136847;TFDP1:-0.472577439441;ELF1,2,4:-0.490199962366;RUNX1..3:-0.510428937835;SP1:-0.520112841618;GFI1:-0.523788238136;ZFP161:-0.527306745631;CREB1:-0.531216110818;POU5F1:-0.532283295239;PDX1:-0.545025490806;SPI1:-0.550827995374;ATF5_CREB3:-0.55667642355;FOXP1:-0.561335393706;SPIB:-0.574519704743;PRRX1,2:-0.577959039425;NKX6-1,2:-0.587001778223;RBPJ:-0.595597872865;OCT4_SOX2{dimer}:-0.60688909453;RFX1:-0.625118372794;PAX8:-0.640268368919;NFKB1_REL_RELA:-0.668862010667;VSX1,2:-0.674570618043;NR5A1,2:-0.685437660443;IRF7:-0.706770307954;ATF4:-0.716411170048;RFX2..5_RFXANK_RFXAP:-0.750559267637;POU1F1:-0.768647654845;CDX1,2,4:-0.774855162446;GATA6:-0.775039729236;PITX1..3:-0.79152045586;ATF2:-0.794399077545;BREu{core}:-0.800149932141;CRX:-0.806533678424;FOXN1:-0.808812782626;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.857052927489;RORA:-0.884331290882;SNAI1..3:-0.900620053797;ZEB1:-0.904700153275;HOXA9_MEIS1:-0.951037883762;NFY{A,B,C}:-0.98611050117;E2F1..5:-1.05189777516;LMO2:-1.11536538557;CUX2:-1.12017271134;SOX{8,9,10}:-1.13079009298;ALX1:-1.1574039618;PAX3,7:-1.19858572485;NANOG:-1.2489285114;FOX{F1,F2,J1}:-1.26504587995;MYOD1:-1.42740110229;FOXQ1:-1.4581774156;POU2F1..3:-1.61077801631;PBX1:-1.94160340956
|xref=
|xref=
}} {{DRAAccessionNumbers
|DRA_sample_Accession=CAGE@DRS007988
|accession_numbers=DRX008095;DRR008967;DRZ000392;DRZ001777;CAGE
|library_id=CNhs11051
}}
}}

Revision as of 17:00, 17 October 2013


Name:Adipocyte - breast, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11051
Sample type:primary cells
Genomic View: UCSC
CAGEd-oPOSSUM:link
Additional information
Sample information
strainNA
tissuebreast
dev stage52 years old adult
sexfemale
age52
cell typeadipocyte
cell lineNA
companyZenbio
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberN/A
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  DRS007988
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11051 CAGE DRX008095 DRR008967
Accession ID Hg19

Library idBAMCTSS
CNhs11051 DRZ000392 DRZ001777
Download raw sequence, BAM & CTSS
Hg19
BAMCTSS
[{{{hg19bam}}} download][{{{hg19ctss}}} donwload]
Hg38
BAMCTSS
[{{{hg38bam}}} download][{{{hg38ctss}}} donwload]


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0662
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.336
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair1.026
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.0725
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0.0725
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.114
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0415
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.0725
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.281
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.229
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0.135
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.326
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.281
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.189
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal1.048
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.724
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.135
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.213
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.666
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0131
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.497
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.243
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.135
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0.0725
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.237
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.602
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.766
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.477
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.845
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.0725
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0.771
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11051

Jaspar motifP-value
MA0002.20.241
MA0003.10.401
MA0004.10.302
MA0006.10.116
MA0007.10.297
MA0009.10.207
MA0014.10.307
MA0017.10.489
MA0018.21.6224e-5
MA0019.10.383
MA0024.11.82728e-6
MA0025.15.63121e-4
MA0027.10.665
MA0028.10.0793
MA0029.10.252
MA0030.10.496
MA0031.10.95
MA0035.20.0273
MA0038.10.0129
MA0039.20.00311
MA0040.10.413
MA0041.10.608
MA0042.10.803
MA0043.12.76212e-4
MA0046.10.467
MA0047.20.373
MA0048.10.407
MA0050.11.68309e-4
MA0051.10.117
MA0052.10.603
MA0055.10.815
MA0057.10.506
MA0058.10.173
MA0059.10.714
MA0060.14.77732e-10
MA0061.13.33417e-4
MA0062.21.6785e-6
MA0065.20.203
MA0066.10.607
MA0067.10.11
MA0068.10.125
MA0069.10.0742
MA0070.10.652
MA0071.10.94
MA0072.10.586
MA0073.10.962
MA0074.10.974
MA0076.10.00341
MA0077.10.462
MA0078.10.579
MA0079.20.95
MA0080.22.84339e-6
MA0081.10.0428
MA0083.10.00505
MA0084.10.192
MA0087.10.321
MA0088.10.855
MA0090.17.68396e-8
MA0091.10.088
MA0092.10.0101
MA0093.10.228
MA0099.21.79812e-4
MA0100.10.892
MA0101.13.872e-7
MA0102.20.332
MA0103.13.78712e-5
MA0104.20.0057
MA0105.10.0259
MA0106.10.31
MA0107.19.11314e-7
MA0108.20.0516
MA0111.10.709
MA0112.20.00635
MA0113.10.0247
MA0114.10.614
MA0115.10.00248
MA0116.10.887
MA0117.10.272
MA0119.10.121
MA0122.10.647
MA0124.10.301
MA0125.10.662
MA0131.10.227
MA0135.10.114
MA0136.11.9298e-8
MA0137.20.859
MA0138.20.251
MA0139.10.341
MA0140.10.256
MA0141.10.708
MA0142.10.101
MA0143.10.923
MA0144.10.586
MA0145.10.172
MA0146.10.771
MA0147.10.0211
MA0148.10.34
MA0149.10.544
MA0150.10.0173
MA0152.10.00297
MA0153.10.88
MA0154.10.921
MA0155.10.321
MA0156.15.65679e-7
MA0157.10.518
MA0159.10.263
MA0160.10.109
MA0162.10.0886
MA0163.10.383
MA0164.10.883
MA0258.10.63
MA0259.10.219



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11051

Novel motifP-value
10.747
100.713
1000.669
1010.198
1020.0174
1030.716
1040.616
1050.122
1060.114
1070.118
1080.439
1090.94
110.409
1100.848
1110.938
1120.705
1130.503
1140.198
1150.0416
1160.276
1170.262
1180.143
1190.501
120.369
1200.924
1210.678
1220.175
1230.0137
1240.558
1250.58
1260.556
1270.209
1280.64
1290.887
130.474
1300.372
1310.494
1320.345
1330.479
1340.331
1350.293
1360.708
1370.807
1380.186
1390.441
140.173
1400.527
1410.592
1420.56
1430.802
1440.775
1450.847
1460.85
1470.294
1480.913
1490.00215
150.764
1500.75
1510.904
1520.0125
1530.157
1540.807
1559.38888e-4
1560.197
1570.672
1580.0227
1590.483
160.0347
1600.579
1610.336
1620.557
1630.205
1640.756
1650.629
1660.325
1670.431
1680.894
1690.0411
170.849
180.402
190.0101
20.323
200.388
210.418
220.23
230.244
240.372
250.264
260.741
270.642
280.12
290.604
30.742
300.402
310.752
322.13856e-12
330.968
340.867
350.659
360.0804
370.198
380.538
390.129
40.581
400.113
410.898
420.344
430.366
440.721
450.802
460.969
470.723
480.663
490.994
50.608
500.647
510.679
520.558
530.106
540.751
550.152
560.677
570.948
580.438
590.212
60.423
600.859
610.257
620.532
630.561
640.23
650.761
660.152
670.66
680.516
690.652
70.277
700.999
710.52
720.712
730.01
740.148
750.957
760.611
770.0889
780.332
790.145
80.946
800.597
810.514
820.609
830.496
840.0843
850.0505
860.604
870.241
880.803
890.177
90.523
900.585
910.704
920.0804
930.902
940.938
950.433
960.564
970.271
980.58
990.0326



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11051


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000325 (stuff accumulating cell)
0000255 (eukaryotic cell)
0000136 (fat cell)
0002617 (adipocyte of breast)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000310 (breast)
0002100 (trunk)
0002384 (connective tissue)
0000479 (tissue)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
0009569 (subdivision of trunk)
0001443 (chest)
0000915 (thoracic segment of trunk)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000156 (human adipocyte of breast sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=FF:11376-118A8&oldid=3078345"