FF:10018-101C9: Difference between revisions

Latest revision as of 12:14, 3 June 2020

Name:	liver, adult, pool1
Species:	Human (Homo sapiens)
Library ID:	CNhs10624
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	liver
dev stage	64,69,70 years old adult
sex	mixed
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Ambion
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	0910061 -9
catalog number	Cat:AM6000 Lot:0910061 -9
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-ToTALLY-RNA-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005542

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10624		CAGE		DRX008674		DRR009546

Accession ID Hg19

Library id		BAM		CTSS
CNhs10624		DRZ000971		DRZ002356

Accession ID Hg38

Library id		BAM		CTSS
CNhs10624		DRZ012321		DRZ013706

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0738
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.453
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0.766
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.239
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.0594
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.112
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-7.027507e-4
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.365
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.112
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.521
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0.792
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0.461
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0.0113
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.337
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0.0594
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.112
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.925
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.215
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.239
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.0594
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.00295
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.582
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0.351
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0.708
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.307
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.239
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.0594
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0.971
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.0594
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0.112
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.00163
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.158
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10624

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.452
MA0003.1	MA0003.1	0.00866
MA0004.1	MA0004.1	0.586
MA0006.1	MA0006.1	0.112
MA0007.1	MA0007.1	0.0247
MA0009.1	MA0009.1	0.326
MA0014.1	MA0014.1	0.579
MA0017.1	MA0017.1	7.6359e-27
MA0018.2	MA0018.2	0.0103
MA0019.1	MA0019.1	0.246
MA0024.1	MA0024.1	0.0128
MA0025.1	MA0025.1	0.331
MA0027.1	MA0027.1	0.723
MA0028.1	MA0028.1	0.104
MA0029.1	MA0029.1	0.357
MA0030.1	MA0030.1	3.63931e-4
MA0031.1	MA0031.1	0.00213
MA0035.2	MA0035.2	1.76772e-4
MA0038.1	MA0038.1	0.735
MA0039.2	MA0039.2	0.414
MA0040.1	MA0040.1	0.218
MA0041.1	MA0041.1	0.113
MA0042.1	MA0042.1	0.547
MA0043.1	MA0043.1	0.541
MA0046.1	MA0046.1	7.40142e-92
MA0047.2	MA0047.2	2.46454e-8
MA0048.1	MA0048.1	0.331
MA0050.1	MA0050.1	0.543
MA0051.1	MA0051.1	0.231
MA0052.1	MA0052.1	0.715
MA0055.1	MA0055.1	0.553
MA0057.1	MA0057.1	0.0914
MA0058.1	MA0058.1	0.365
MA0059.1	MA0059.1	0.131
MA0060.1	MA0060.1	0.0124
MA0061.1	MA0061.1	0.412
MA0062.2	MA0062.2	0.00799
MA0065.2	MA0065.2	2.52696e-14
MA0066.1	MA0066.1	0.0613
MA0067.1	MA0067.1	0.0337
MA0068.1	MA0068.1	0.201
MA0069.1	MA0069.1	0.337
MA0070.1	MA0070.1	0.278
MA0071.1	MA0071.1	0.0389
MA0072.1	MA0072.1	0.0132
MA0073.1	MA0073.1	0.588
MA0074.1	MA0074.1	0.0956
MA0076.1	MA0076.1	0.0481
MA0077.1	MA0077.1	0.337
MA0078.1	MA0078.1	0.677
MA0079.2	MA0079.2	0.356
MA0080.2	MA0080.2	0.0307
MA0081.1	MA0081.1	0.259
MA0083.1	MA0083.1	0.605
MA0084.1	MA0084.1	0.785
MA0087.1	MA0087.1	0.284
MA0088.1	MA0088.1	0.68
MA0090.1	MA0090.1	0.695
MA0091.1	MA0091.1	0.782
MA0092.1	MA0092.1	0.239
MA0093.1	MA0093.1	0.51
MA0099.2	MA0099.2	7.11106e-8
MA0100.1	MA0100.1	0.24
MA0101.1	MA0101.1	0.0532
MA0102.2	MA0102.2	0.393
MA0103.1	MA0103.1	0.00495
MA0104.2	MA0104.2	0.987
MA0105.1	MA0105.1	0.792
MA0106.1	MA0106.1	0.889
MA0107.1	MA0107.1	0.0758
MA0108.2	MA0108.2	0.108
MA0111.1	MA0111.1	0.826
MA0112.2	MA0112.2	3.08069e-6
MA0113.1	MA0113.1	0.0939
MA0114.1	MA0114.1	3.14159e-25
MA0115.1	MA0115.1	9.48278e-11
MA0116.1	MA0116.1	0.00888
MA0117.1	MA0117.1	0.746
MA0119.1	MA0119.1	0.21
MA0122.1	MA0122.1	0.454
MA0124.1	MA0124.1	0.787
MA0125.1	MA0125.1	0.521
MA0131.1	MA0131.1	0.233
MA0135.1	MA0135.1	0.47
MA0136.1	MA0136.1	0.018
MA0137.2	MA0137.2	3.12049e-5
MA0138.2	MA0138.2	0.064
MA0139.1	MA0139.1	0.266
MA0140.1	MA0140.1	0.139
MA0141.1	MA0141.1	1.63627e-6
MA0142.1	MA0142.1	0.0851
MA0143.1	MA0143.1	0.383
MA0144.1	MA0144.1	6.12565e-4
MA0145.1	MA0145.1	0.144
MA0146.1	MA0146.1	0.125
MA0147.1	MA0147.1	0.967
MA0148.1	MA0148.1	2.36461e-5
MA0149.1	MA0149.1	0.531
MA0150.1	MA0150.1	0.591
MA0152.1	MA0152.1	7.1364e-5
MA0153.1	MA0153.1	3.46492e-46
MA0154.1	MA0154.1	0.084
MA0155.1	MA0155.1	0.107
MA0156.1	MA0156.1	0.183
MA0157.1	MA0157.1	0.0183
MA0159.1	MA0159.1	4.28532e-5
MA0160.1	MA0160.1	2.03708e-4
MA0162.1	MA0162.1	0.325
MA0163.1	MA0163.1	0.134
MA0164.1	MA0164.1	0.444
MA0258.1	MA0258.1	0.00242
MA0259.1	MA0259.1	0.315

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10624

Novel motif	Logo	P-value
1	1	0.212
10	10	0.721
100	100	0.506
101	101	0.674
102	102	0.202
103	103	0.0523
104	104	0.659
105	105	0.969
106	106	0.0121
107	107	0.0122
108	108	0.483
109	109	0.176
11	11	0.243
110	110	0.338
111	111	0.593
112	112	0.0179
113	113	0.499
114	114	0.129
115	115	0.526
116	116	0.363
117	117	0.918
118	118	0.49
119	119	0.0767
12	12	0.579
120	120	0.862
121	121	0.304
122	122	0.757
123	123	0.0299
124	124	0.2
125	125	0.197
126	126	0.173
127	127	0.679
128	128	0.142
129	129	0.216
13	13	0.119
130	130	0.27
131	131	0.914
132	132	0.381
133	133	0.23
134	134	0.956
135	135	0.212
136	136	0.828
137	137	0.364
138	138	0.768
139	139	0.873
14	14	0.879
140	140	0.655
141	141	0.17
142	142	0.499
143	143	0.145
144	144	0.389
145	145	0.309
146	146	0.0175
147	147	0.948
148	148	0.0902
149	149	0.0279
15	15	0.306
150	150	0.53
151	151	0.382
152	152	0.0568
153	153	0.825
154	154	0.169
155	155	0.0555
156	156	0.972
157	157	0.403
158	158	0.483
159	159	0.979
16	16	0.217
160	160	0.286
161	161	0.98
162	162	0.401
163	163	0.807
164	164	0.814
165	165	0.0164
166	166	0.854
167	167	0.799
168	168	0.476
169	169	0.0034
17	17	0.295
18	18	0.73
19	19	0.016
2	2	0.19
20	20	0.831
21	21	0.0921
22	22	0.0737
23	23	0.159
24	24	0.524
25	25	0.897
26	26	0.156
27	27	0.315
28	28	0.909
29	29	0.572
3	3	0.453
30	30	0.256
31	31	0.301
32	32	0.339
33	33	0.338
34	34	0.311
35	35	0.37
36	36	0.369
37	37	0.3
38	38	0.325
39	39	0.113
4	4	0.139
40	40	0.0571
41	41	0.328
42	42	0.629
43	43	0.197
44	44	5.13928e-4
45	45	0.176
46	46	0.308
47	47	0.476
48	48	0.34
49	49	0.307
5	5	0.242
50	50	0.507
51	51	0.69
52	52	0.0857
53	53	0.713
54	54	0.47
55	55	0.776
56	56	0.61
57	57	0.702
58	58	0.325
59	59	0.054
6	6	0.176
60	60	0.0507
61	61	0.435
62	62	0.264
63	63	0.204
64	64	0.618
65	65	0.14
66	66	0.195
67	67	0.135
68	68	0.772
69	69	0.801
7	7	0.0935
70	70	0.426
71	71	0.181
72	72	0.151
73	73	0.104
74	74	0.986
75	75	0.559
76	76	0.336
77	77	0.00975
78	78	0.147
79	79	0.895
8	8	0.0751
80	80	0.48
81	81	0.695
82	82	0.266
83	83	0.803
84	84	0.334
85	85	0.0455
86	86	0.343
87	87	0.336
88	88	0.542
89	89	0.0765
9	9	0.581
90	90	0.653
91	91	0.388
92	92	0.196
93	93	0.446
94	94	0.26
95	95	0.572
96	96	0.236
97	97	0.29
98	98	0.91
99	99	0.0955

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10624

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010018 human liver - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0002107 (liver)
0002100 (trunk)
0000479 (tissue)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002368 (endocrine gland)
0005177 (trunk region element)
0002365 (exocrine gland)
0005172 (abdomen element)
0006925 (digestive gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002417 (abdominal segment of trunk)
0000949 (endocrine system)
0002330 (exocrine system)
0000916 (abdomen)
0002423 (hepatobiliary system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010018 (human liver - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0001041 (foregut)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0003104 (mesenchyme)
UBERON:0004161 (septum transversum)
UBERON:0009497 (epithelium of foregut-midgut junction)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000015,UBERON:0000061,UBERON:0000062,UBERON:0000077,UBERON:0000465,UBERON:0000466,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000916,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0000926,UBERON:0000949,UBERON:0001007,UBERON:0001041,UBERON:0001048,UBERON:0001062,UBERON:0001555,UBERON:0002050,UBERON:0002100,UBERON:0002107,UBERON:0002330,UBERON:0002365,UBERON:0002368,UBERON:0002405,UBERON:0002417,UBERON:0002423,UBERON:0002530,UBERON:0002532,UBERON:0003104,UBERON:0003894,UBERON:0004119,UBERON:0004120,UBERON:0004161,UBERON:0004185,UBERON:0004921,UBERON:0005057,UBERON:0005172,UBERON:0005173,UBERON:0005177,UBERON:0005256,UBERON:0005423,UBERON:0006235,UBERON:0006925,UBERON:0007023,UBERON:0007026,UBERON:0008835,UBERON:0008836,UBERON:0009142
+|DRA_sample_Accession=CAGE@SAMD00005542
+|accession_numbers=CAGE;DRX008674;DRR009546;DRZ000971;DRZ002356;DRZ012321;DRZ013706
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0002107,UBERON:0002100,UBERON:0000479,UBERON:0001007,UBERON:0004119,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002368,UBERON:0005177,UBERON:0002365,UBERON:0005172,UBERON:0006925,UBERON:0002530,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0000949,UBERON:0002330,UBERON:0000916,UBERON:0002423
 |ancestors_in_cell_lineage_facet=
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010018
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!3.84!6880.19!SEBOX;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!3.09!1217.85!SEBOX;;chr19:4153613..4153652,+!p1@CREB3L3!2.80!629.00!CREB3L3;;chr17:26697257..26697268,-!p3@SEBOX,p3@VTN!2.74!544.44!SEBOX;;chr1:214161272..214161322,+!p1@PROX1!2.19!212.35!PROX1;;chr15:53082521..53082549,-!p1@ONECUT1!2.00!99.66!ONECUT1;;chr19:50432453..50432468,+!p1@ATF5!1.96!4639.55!ATF5;;chr7:73038839..73038862,-!p1@MLXIPL!1.93!83.83!MLXIPL;;chr12:100867653..100867677,+!p2@NR1H4!1.87!73.42!NR1H4;;chr1:27240455..27240474,-!p1@NR0B2!1.86!71.08!NR0B2;;chr20:43029862..43029900,+!p1@HNF4A!1.82!65.80!HNF4A;;chr12:100867627..100867652,+!p1@NR1H4!1.80!62.58!NR1H4;;chr17:53344945..53344977,+!p2@HLF!1.75!55.40!HLF;;chr1:201979743..201979762,+!p1@ELF3!1.74!54.22!ELF3;;chr1:151804244..151804310,-!p1@RORC!1.72!52.03!RORC;;chr19:50435736..50435781,+!p3@ATF5!1.66!61.11!ATF5;;chr19:4153719..4153730,+!p2@CREB3L3!1.65!43.38!CREB3L3;;chrX:66763856..66763896,+!p1@AR!1.64!60.38!AR;;chr14:38064429..38064486,-!p1@FOXA1!1.64!42.65!FOXA1;;chr19:46367576..46367592,+!p1@FOXA3!1.61!39.42!FOXA3;;chr8:11561684..11561751,+!p1@GATA4!1.61!39.28!GATA4;;chr17:53344980..53345011,+!p3@HLF!1.57!36.20!HLF;;chr19:33793430..33793447,-!p1@CEBPA!1.54!136.15!CEBPA;;chr1:201979703..201979721,+!p2@ELF3!1.52!31.80!ELF3;;chr1:199996733..199996781,+!p1@NR5A2!1.51!31.36!NR5A2;;chr8:76319876..76319926,+!p1@HNF4G!1.49!29.90!HNF4G;;chrX:131547625..131547644,-!p4@MBNL3!1.49!29.90!MBNL3;;chr12:100897130..100897149,+!p3@NR1H4!1.45!27.11!NR1H4;;chr1:161208013..161208038,-!p1@NR1I3!1.42!25.35!NR1I3;;chr16:51185318..51185348,-!p2@SALL1!1.42!25.21!SALL1;;chr11:47400078..47400106,-!p1@SPI1!1.41!24.62!SPI1;;chr20:22564895..22564910,-!p1@FOXA2!1.39!23.74!FOXA2;;chr2:85981107..85981120,+!p3@ATOH8!1.38!22.86!ATOH8;;chr3:126076242..126076257,-!p1@KLF15!1.32!24.91!KLF15;;chr17:26694979..26695007,-!p4@SEBOX!1.31!19.34!SEBOX;;chr20:62680984..62680999,-!p1@SOX18!1.29!24.18!SOX18;;chr17:53342311..53342400,+!p1@HLF!1.28!20.66!HLF;;chr6:126240380..126240430,+!p2@NCOA7!1.27!45.14!NCOA7;;chr17:15942934..15942957,-!p5@NCOR1!1.27!17.73!NCOR1;;chr8:71316428..71316459,-!p2@NCOA2!1.26!28.72!NCOA2;;chr4:174451370..174451387,-!p1@HAND2!1.26!17.15!HAND2;;chr3:126073018..126073036,-!p3@KLF15!1.26!17.00!KLF15;;chr2:46524897..46524911,+!p2@EPAS1!1.25!46.02!EPAS1;;chr16:85932760..85932775,+!p1@IRF8!1.25!16.85!IRF8;;chr1:161207986..161207998,-!p2@NR1I3!1.25!16.71!NR1I3;;chr17:17726907..17726958,-!p2@SREBF1!1.22!95.70!SREBF1;;chr1:209979467..209979494,-!p1@IRF6!1.20!16.56!IRF6;;chr7:97840743..97840786,+!p1@BHLHA15!1.20!14.95!BHLHA15;;chr15:60884706..60884743,-!p1@RORA!1.16!69.47!RORA;;chr1:199996702..199996732,+!p5@NR5A2!1.16!13.48!NR5A2;;chr21:39870339..39870443,-!p1@ERG!1.16!13.48!ERG;;chr6:134210243..134210257,+!p1@TCF21!1.14!12.90!TCF21;;chr9:137217986..137218049,+!p3@RXRA!1.13!35.91!RXRA;;chr9:22447422..22447483,+!p1@DMRTA1!1.13!12.46!DMRTA1;;chr1:214161328..214161348,+!p2@PROX1!1.13!12.46!PROX1;;chr19:50434005..50434020,+!p10@ATF5!1.11!12.02!ATF5;;chr22:29196433..29196445,-!p4@XBP1!1.10!12.90!XBP1;;chrX:66763914..66763933,+!p3@AR!1.10!11.72!AR;;chr1:214161358..214161377,+!p3@PROX1!1.09!11.28!PROX1;;chr10:94449703..94449718,+!p1@HHEX!1.08!42.94!HHEX;;chr2:68592406..68592424,+!p1@PLEK!1.08!10.99!PLEK;;chr11:113930425..113930471,+!p1@ZBTB16!1.07!15.53!ZBTB16;;chr3:126076264..126076305,-!p2@KLF15!1.07!14.95!KLF15;;chr20:43030002..43030028,+!p3@HNF4A!1.07!10.84!HNF4A;;chr20:42984330..42984364,+!p2@HNF4A!1.07!10.70!HNF4A;;chr17:26695013..26695024,-!p7@SEBOX!1.07!10.70!SEBOX;;chr16:79634624..79634642,-!p1@MAF!1.06!41.33!MAF;;chr1:161207964..161207975,-!p3@NR1I3!1.06!10.55!NR1I3;;chr12:100867736..100867750,+!p4@NR1H4!1.06!10.55!NR1H4;;chr6:126221034..126221056,+!p13@NCOA7!1.06!10.41!NCOA7;;chr20:22566120..22566136,-!p4@FOXA2!1.05!10.26!FOXA2;;chr18:55102628..55102646,+!p2@ONECUT2!1.05!10.26!ONECUT2;;chrX:131547596..131547609,-!p10@MBNL3!1.05!10.26!MBNL3;;chr18:55102598..55102623,+!p1@ONECUT2!1.05!10.11!ONECUT2;;chr1:61548225..61548299,+!p1@NFIA!1.04!133.07!NFIA;;chr6:391743..391759,+!p1@IRF4!1.02!9.53!IRF4;;chr11:47279504..47279563,+!p1@NR1H3!1.01!21.40!NR1H3;;chr22:29196547..29196563,-!p2@XBP1!1.00!333.70!XBP1;;chr17:36105042..36105060,-!p1@HNF1B!1.00!9.09!HNF1B;;chr19:35760698..35760738,+!p8@USF2!1.00!9.09!USF2;;chr20:62365971..62365986,+!p5@ZGPAT!1.00!9.09!ZGPAT;;chr11:113930291..113930339,+!p2@ZBTB16!0.99!14.66!ZBTB16;;chr17:26694940..26694949,-!p6@SEBOX!0.99!8.79!SEBOX;;chr19:50435673..50435690,+!p8@ATF5!0.98!8.65!ATF5;;chr16:51185573..51185593,-!p3@SALL1!0.98!8.50!SALL1;;chr11:61520075..61520136,+!p1@C11orf9!0.97!18.17!C11orf9;;chr6:126240356..126240379,+!p7@NCOA7!0.97!10.26!NCOA7;;chr6:126240442..126240459,+!p4@NCOA7!0.96!10.41!NCOA7;;chr1:40105299..40105326,-!p1@HEYL!0.96!8.06!HEYL;;chr12:100867695..100867706,+!p6@NR1H4!0.96!8.06!NR1H4;;chr2:27357446..27357475,-!p2@PREB!0.95!28.28!PREB;;chr1:161736038..161736056,+!p4@ATF6!0.94!18.76!ATF6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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000949;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002107;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002365;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002368;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002423;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003929;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0007499;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0009854
+|ffid_belonging_in_development=UBERON:0001041,UBERON:0002532,UBERON:0006595,UBERON:0003104,UBERON:0004161,UBERON:0009497,UBERON:0010316
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/liver%252c%2520adult%252c%2520pool1.CNhs10624.10018-101C9.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/liver%252c%2520adult%252c%2520pool1.CNhs10624.10018-101C9.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/liver%252c%2520adult%252c%2520pool1.CNhs10624.10018-101C9.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/liver%252c%2520adult%252c%2520pool1.CNhs10624.10018-101C9.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/liver%252c%2520adult%252c%2520pool1.CNhs10624.10018-101C9.hg38.nobarcode.ctss.bed.gz
 |id=FF:10018-101C9
-|is_a=EFO:0002091;;FF:0000004;;FF:0000210;;FF:0010018
+|is_a=EFO:0002091;;FF:0010018
+|is_obsolete=
+|library_id=CNhs10624
+|library_id_phase_based=2:CNhs10624
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10018
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10018
 |name=liver, adult, pool1
 |namespace=FANTOM5
@@ Line 42: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs10624,LSID657,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
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 |rna_box=101
 |rna_catalog_number=Cat:AM6000 Lot:0910061 -9
@@ Line 57: / Line 79: @@
 |rna_weight_ug=10
 |sample_age=
+|sample_category=tissues
 |sample_cell_catalog=NA
 |sample_cell_line=
@@ Line 69: / Line 92: @@
 |sample_ethnicity=C?
 |sample_experimental_condition=
+|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.7598221807075e-259!GO:0005737;cytoplasm;1.77268055236491e-217!GO:0044444;cytoplasmic part;4.75199995836539e-200!GO:0043227;membrane-bound organelle;1.89770998733021e-126!GO:0043231;intracellular membrane-bound organelle;1.89770998733021e-126!GO:0043226;organelle;2.38353069412326e-111!GO:0043229;intracellular organelle;4.75673356839889e-111!GO:0005739;mitochondrion;8.89904590442823e-105!GO:0044422;organelle part;4.83900548236158e-100!GO:0044446;intracellular organelle part;1.40289263927424e-98!GO:0031090;organelle membrane;2.28770641967025e-79!GO:0044237;cellular metabolic process;1.27897111101965e-70!GO:0044429;mitochondrial part;1.30744975178225e-66!GO:0044238;primary metabolic process;3.24872402101146e-65!GO:0009058;biosynthetic process;7.16427447582903e-63!GO:0030529;ribonucleoprotein complex;3.03481502179895e-61!GO:0032991;macromolecular complex;3.22554725384776e-56!GO:0043233;organelle lumen;4.34687163442735e-56!GO:0031974;membrane-enclosed lumen;4.34687163442735e-56!GO:0044249;cellular biosynthetic process;1.73511349242718e-54!GO:0005783;endoplasmic reticulum;2.73719923047445e-49!GO:0005515;protein binding;2.13840563492686e-48!GO:0031967;organelle envelope;1.60862010075923e-47!GO:0031975;envelope;3.30438880316925e-47!GO:0019538;protein metabolic process;5.82058397768506e-47!GO:0006412;translation;3.59699329791927e-44!GO:0003723;RNA binding;7.51718422619382e-44!GO:0044260;cellular macromolecule metabolic process;2.31123174291537e-43!GO:0009059;macromolecule biosynthetic process;2.64412122138763e-43!GO:0005840;ribosome;7.38232981324745e-43!GO:0016491;oxidoreductase activity;1.60156429626783e-42!GO:0005829;cytosol;1.01163665023782e-41!GO:0044267;cellular protein metabolic process;1.80912509579958e-41!GO:0005740;mitochondrial envelope;4.2369673913649e-40!GO:0015031;protein transport;4.98949049052001e-40!GO:0033036;macromolecule localization;5.89551987055855e-40!GO:0006082;organic acid metabolic process;1.22357165156654e-39!GO:0044432;endoplasmic reticulum part;1.37613625228153e-39!GO:0019752;carboxylic acid metabolic process;1.42594858106241e-38!GO:0031966;mitochondrial membrane;1.49246191089096e-38!GO:0045184;establishment of protein localization;1.91612169481229e-38!GO:0019866;organelle inner membrane;6.43324252725772e-38!GO:0008104;protein localization;6.81842424976165e-38!GO:0005743;mitochondrial inner membrane;8.19517148315061e-37!GO:0003735;structural constituent of ribosome;2.95236420413957e-36!GO:0012505;endomembrane system;7.04936280172141e-36!GO:0043170;macromolecule metabolic process;9.05291146221882e-36!GO:0031980;mitochondrial lumen;2.02181545121157e-34!GO:0005759;mitochondrial matrix;2.02181545121157e-34!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.17581320982564e-33!GO:0005789;endoplasmic reticulum membrane;1.36225592597226e-33!GO:0044428;nuclear part;8.96597878696723e-33!GO:0044248;cellular catabolic process;4.72203038810526e-31!GO:0033279;ribosomal subunit;1.65857237932901e-30!GO:0006091;generation of precursor metabolites and energy;5.24841909703233e-28!GO:0006886;intracellular protein transport;2.38301466004089e-27!GO:0046907;intracellular transport;8.36604576466905e-27!GO:0006396;RNA processing;1.43624378284243e-25!GO:0043234;protein complex;1.83051009394739e-25!GO:0051186;cofactor metabolic process;4.4443795652093e-23!GO:0044255;cellular lipid metabolic process;6.92552335107001e-23!GO:0016043;cellular component organization and biogenesis;9.05194480731781e-23!GO:0009056;catabolic process;1.42767469507013e-22!GO:0006629;lipid metabolic process;2.00746318957791e-22!GO:0016071;mRNA metabolic process;2.97271657459149e-22!GO:0009055;electron carrier activity;3.12339542200228e-22!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.71337347594463e-21!GO:0008380;RNA splicing;7.47751047771012e-21!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.49189686671649e-20!GO:0032787;monocarboxylic acid metabolic process;2.38557281273148e-20!GO:0031981;nuclear lumen;4.27914709517494e-20!GO:0006119;oxidative phosphorylation;1.37648189677026e-19!GO:0006732;coenzyme metabolic process;3.92727149001212e-19!GO:0048037;cofactor binding;7.11470037023784e-19!GO:0006118;electron transport;8.70659174722901e-19!GO:0006807;nitrogen compound metabolic process;9.47437845723548e-19!GO:0006397;mRNA processing;2.0803599446333e-18!GO:0065003;macromolecular complex assembly;3.75128276977338e-18!GO:0044455;mitochondrial membrane part;6.30408448205189e-18!GO:0006950;response to stress;1.36331245352781e-17!GO:0016874;ligase activity;3.32464759424715e-17!GO:0015935;small ribosomal subunit;4.07032622290227e-17!GO:0051641;cellular localization;8.76686555712211e-17!GO:0051649;establishment of cellular localization;9.75787887082775e-17!GO:0006457;protein folding;1.10930809965999e-16!GO:0044445;cytosolic part;2.21250762784434e-16!GO:0005746;mitochondrial respiratory chain;3.28553785671442e-16!GO:0044265;cellular macromolecule catabolic process;3.7136158653871e-16!GO:0009308;amine metabolic process;4.38228205034253e-16!GO:0006520;amino acid metabolic process;1.1108569392991e-15!GO:0005681;spliceosome;2.22904681282404e-15!GO:0022618;protein-RNA complex assembly;2.69927369987335e-15!GO:0002526;acute inflammatory response;2.94444032761604e-15!GO:0005794;Golgi apparatus;6.72155924738106e-15!GO:0022607;cellular component assembly;9.0947170963625e-15!GO:0006519;amino acid and derivative metabolic process;1.80283400589517e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.94458586420018e-14!GO:0015934;large ribosomal subunit;2.00097261701531e-14!GO:0050136;NADH dehydrogenase (quinone) activity;2.60340494038563e-14!GO:0003954;NADH dehydrogenase activity;2.60340494038563e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.60340494038563e-14!GO:0050662;coenzyme binding;3.00787747350576e-14!GO:0006605;protein targeting;3.47748303659275e-14!GO:0000502;proteasome complex (sensu Eukaryota);3.66342254163659e-14!GO:0048770;pigment granule;4.96688111546586e-14!GO:0042470;melanosome;4.96688111546586e-14!GO:0008135;translation factor activity, nucleic acid binding;6.23240007730555e-14!GO:0005761;mitochondrial ribosome;7.55039571324617e-14!GO:0000313;organellar ribosome;7.55039571324617e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;1.16044356219669e-13!GO:0006066;alcohol metabolic process;1.82427621273185e-13!GO:0019941;modification-dependent protein catabolic process;2.41369633236643e-13!GO:0043632;modification-dependent macromolecule catabolic process;2.41369633236643e-13!GO:0006511;ubiquitin-dependent protein catabolic process;3.07521272574096e-13!GO:0044257;cellular protein catabolic process;3.45344961392634e-13!GO:0009057;macromolecule catabolic process;4.22543151675489e-13!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.68517292572521e-13!GO:0016817;hydrolase activity, acting on acid anhydrides;8.3141661574978e-13!GO:0016462;pyrophosphatase activity;9.44935599123994e-13!GO:0051082;unfolded protein binding;9.96317647050193e-13!GO:0044262;cellular carbohydrate metabolic process;1.07149030378885e-12!GO:0042775;organelle ATP synthesis coupled electron transport;1.15298435347362e-12!GO:0042773;ATP synthesis coupled electron transport;1.15298435347362e-12!GO:0006915;apoptosis;1.16933999583653e-12!GO:0008219;cell death;1.18357209707831e-12!GO:0016265;death;1.18357209707831e-12!GO:0012501;programmed cell death;1.18357209707831e-12!GO:0030964;NADH dehydrogenase complex (quinone);1.23819653062769e-12!GO:0045271;respiratory chain complex I;1.23819653062769e-12!GO:0005747;mitochondrial respiratory chain complex I;1.23819653062769e-12!GO:0000166;nucleotide binding;1.39891274575207e-12!GO:0016192;vesicle-mediated transport;1.40142211682993e-12!GO:0005792;microsome;2.46976475127459e-12!GO:0043285;biopolymer catabolic process;2.75763558329288e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.94098179326517e-12!GO:0008134;transcription factor binding;4.40399437670867e-12!GO:0006631;fatty acid metabolic process;4.50614036432672e-12!GO:0005793;ER-Golgi intermediate compartment;4.77727577515539e-12!GO:0017111;nucleoside-triphosphatase activity;5.74950158064064e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;6.04648612159501e-12!GO:0005777;peroxisome;7.9851077931706e-12!GO:0042579;microbody;7.9851077931706e-12!GO:0042598;vesicular fraction;1.07065231257433e-11!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.27583011913659e-11!GO:0005654;nucleoplasm;1.34530390996891e-11!GO:0048193;Golgi vesicle transport;1.904442083056e-11!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;2.76417814981273e-11!GO:0002541;activation of plasma proteins during acute inflammatory response;3.45894380396869e-11!GO:0006956;complement activation;3.45894380396869e-11!GO:0006413;translational initiation;6.17560035611883e-11!GO:0006958;complement activation, classical pathway;9.37696584438962e-11!GO:0002455;humoral immune response mediated by circulating immunoglobulin;1.31144540771876e-10!GO:0006446;regulation of translational initiation;1.3234683966602e-10!GO:0016787;hydrolase activity;1.93121941633922e-10!GO:0016125;sterol metabolic process;2.19077988847569e-10!GO:0005730;nucleolus;2.5329677215965e-10!GO:0008610;lipid biosynthetic process;4.24425655678068e-10!GO:0003743;translation initiation factor activity;6.61455808250012e-10!GO:0030163;protein catabolic process;7.31644687816083e-10!GO:0044451;nucleoplasm part;8.66486019381901e-10!GO:0051188;cofactor biosynthetic process;1.07031241849975e-09!GO:0009060;aerobic respiration;1.21103697827878e-09!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.87870397859388e-09!GO:0006913;nucleocytoplasmic transport;1.91909752784298e-09!GO:0005773;vacuole;1.91909752784298e-09!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;1.97718607972534e-09!GO:0005634;nucleus;2.04815085077261e-09!GO:0045333;cellular respiration;2.1352810646332e-09!GO:0051187;cofactor catabolic process;2.60128234004557e-09!GO:0006512;ubiquitin cycle;3.11536261845704e-09!GO:0015980;energy derivation by oxidation of organic compounds;3.15624348772253e-09!GO:0008203;cholesterol metabolic process;3.15624348772253e-09!GO:0006084;acetyl-CoA metabolic process;3.85337903284975e-09!GO:0051169;nuclear transport;4.80723971650242e-09!GO:0000323;lytic vacuole;5.10179065913109e-09!GO:0005764;lysosome;5.10179065913109e-09!GO:0008202;steroid metabolic process;6.31148124444262e-09!GO:0008565;protein transporter activity;6.71050487468142e-09!GO:0017076;purine nucleotide binding;7.65439396386523e-09!GO:0005975;carbohydrate metabolic process;8.52489275955319e-09!GO:0005635;nuclear envelope;9.07299329236786e-09!GO:0005768;endosome;9.89050413622619e-09!GO:0006461;protein complex assembly;1.07437156421044e-08!GO:0046930;pore complex;1.58212679179969e-08!GO:0006099;tricarboxylic acid cycle;1.73801400172582e-08!GO:0046356;acetyl-CoA catabolic process;1.73801400172582e-08!GO:0044270;nitrogen compound catabolic process;2.05094922908753e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.14373819361119e-08!GO:0017038;protein import;2.19001760673696e-08!GO:0009063;amino acid catabolic process;2.33149849547551e-08!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;2.64905145177582e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.08803607788524e-08!GO:0009109;coenzyme catabolic process;3.55607401735732e-08!GO:0005506;iron ion binding;4.63388047015196e-08!GO:0046483;heterocycle metabolic process;6.04781882771913e-08!GO:0009108;coenzyme biosynthetic process;8.17166305899457e-08!GO:0009310;amine catabolic process;1.22978939958084e-07!GO:0010467;gene expression;1.30356574154753e-07!GO:0042981;regulation of apoptosis;1.53098925267893e-07!GO:0006869;lipid transport;1.87075114859354e-07!GO:0003712;transcription cofactor activity;1.93411995941169e-07!GO:0000398;nuclear mRNA splicing, via spliceosome;1.99181200651829e-07!GO:0000375;RNA splicing, via transesterification reactions;1.99181200651829e-07!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.99181200651829e-07!GO:0051246;regulation of protein metabolic process;2.20334908451031e-07!GO:0043412;biopolymer modification;2.39468897887932e-07!GO:0043067;regulation of programmed cell death;2.60159656659701e-07!GO:0002253;activation of immune response;2.65079721538669e-07!GO:0016604;nuclear body;2.86447650023808e-07!GO:0031965;nuclear membrane;2.88529571304953e-07!GO:0006888;ER to Golgi vesicle-mediated transport;2.93348287711097e-07!GO:0019842;vitamin binding;3.05120153665238e-07!GO:0016740;transferase activity;3.184729955101e-07!GO:0042254;ribosome biogenesis and assembly;3.50665781961502e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.79682570103559e-07!GO:0005319;lipid transporter activity;4.24417553175683e-07!GO:0043069;negative regulation of programmed cell death;4.25045172246347e-07!GO:0043066;negative regulation of apoptosis;5.39721043690294e-07!GO:0019439;aromatic compound catabolic process;6.13269404336735e-07!GO:0009611;response to wounding;7.14452445204461e-07!GO:0006996;organelle organization and biogenesis;7.21287601996128e-07!GO:0032553;ribonucleotide binding;9.53067344007945e-07!GO:0032555;purine ribonucleotide binding;9.53067344007945e-07!GO:0030120;vesicle coat;1.07570228239513e-06!GO:0030662;coated vesicle membrane;1.07570228239513e-06!GO:0016126;sterol biosynthetic process;1.12741320394297e-06!GO:0016064;immunoglobulin mediated immune response;1.15758205603056e-06!GO:0005996;monosaccharide metabolic process;1.16689853978582e-06!GO:0016607;nuclear speck;1.22528720177294e-06!GO:0005788;endoplasmic reticulum lumen;1.23829353848316e-06!GO:0031988;membrane-bound vesicle;1.38189792754626e-06!GO:0031982;vesicle;1.40091232625809e-06!GO:0044453;nuclear membrane part;1.42234481491789e-06!GO:0008652;amino acid biosynthetic process;1.63178845660729e-06!GO:0048523;negative regulation of cellular process;1.69112876429771e-06!GO:0000096;sulfur amino acid metabolic process;1.70282364565747e-06!GO:0044431;Golgi apparatus part;1.74252164207005e-06!GO:0019829;cation-transporting ATPase activity;1.8075516290897e-06!GO:0006464;protein modification process;1.90071124705729e-06!GO:0015986;ATP synthesis coupled proton transport;1.94973098039457e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.94973098039457e-06!GO:0019318;hexose metabolic process;1.99909547430073e-06!GO:0008639;small protein conjugating enzyme activity;2.09500680883723e-06!GO:0016853;isomerase activity;2.1744847682195e-06!GO:0016023;cytoplasmic membrane-bound vesicle;2.35149913542928e-06!GO:0006695;cholesterol biosynthetic process;2.37141055041736e-06!GO:0019724;B cell mediated immunity;2.37141055041736e-06!GO:0006752;group transfer coenzyme metabolic process;2.53305104818637e-06!GO:0016829;lyase activity;2.64548702334039e-06!GO:0031410;cytoplasmic vesicle;2.74198491870861e-06!GO:0005839;proteasome core complex (sensu Eukaryota);2.93461516317802e-06!GO:0004842;ubiquitin-protein ligase activity;3.22246190197436e-06!GO:0019787;small conjugating protein ligase activity;3.5165209672099e-06!GO:0065002;intracellular protein transport across a membrane;3.82035006075774e-06!GO:0009259;ribonucleotide metabolic process;3.86215129108978e-06!GO:0006006;glucose metabolic process;4.09261870668126e-06!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.30331819648424e-06!GO:0004812;aminoacyl-tRNA ligase activity;4.30331819648424e-06!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.30331819648424e-06!GO:0006163;purine nucleotide metabolic process;4.6422634692724e-06!GO:0016887;ATPase activity;5.47149778129401e-06!GO:0006957;complement activation, alternative pathway;5.68509371214959e-06!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;5.77212786464226e-06!GO:0048519;negative regulation of biological process;5.78772103256227e-06!GO:0006613;cotranslational protein targeting to membrane;5.79134720555301e-06!GO:0006790;sulfur metabolic process;6.51784433501697e-06!GO:0006399;tRNA metabolic process;6.51784433501697e-06!GO:0043038;amino acid activation;7.3687383020585e-06!GO:0006418;tRNA aminoacylation for protein translation;7.3687383020585e-06!GO:0043039;tRNA aminoacylation;7.3687383020585e-06!GO:0030554;adenyl nucleotide binding;7.36902862890851e-06!GO:0003924;GTPase activity;7.37204111671962e-06!GO:0005770;late endosome;7.9393474961994e-06!GO:0005525;GTP binding;8.41408170021685e-06!GO:0051170;nuclear import;1.03183638550804e-05!GO:0007005;mitochondrion organization and biogenesis;1.332119688879e-05!GO:0008654;phospholipid biosynthetic process;1.36748702402645e-05!GO:0006164;purine nucleotide biosynthetic process;1.46056714120004e-05!GO:0016881;acid-amino acid ligase activity;1.4891312298435e-05!GO:0005643;nuclear pore;1.59286659004233e-05!GO:0019395;fatty acid oxidation;1.60895678013344e-05!GO:0006979;response to oxidative stress;1.84515337857349e-05!GO:0043283;biopolymer metabolic process;1.84947173163772e-05!GO:0006606;protein import into nucleus;1.97624677590528e-05!GO:0048475;coated membrane;2.04757381353414e-05!GO:0030117;membrane coat;2.04757381353414e-05!GO:0009260;ribonucleotide biosynthetic process;2.18207340528529e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.23783639324063e-05!GO:0003714;transcription corepressor activity;2.28268016638594e-05!GO:0005791;rough endoplasmic reticulum;2.44577996726915e-05!GO:0045259;proton-transporting ATP synthase complex;2.46233975733312e-05!GO:0009199;ribonucleoside triphosphate metabolic process;2.49838079111719e-05!GO:0042157;lipoprotein metabolic process;2.53140053351425e-05!GO:0004298;threonine endopeptidase activity;2.54391130239922e-05!GO:0009142;nucleoside triphosphate biosynthetic process;2.74909610065072e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.74909610065072e-05!GO:0044440;endosomal part;2.7578912327694e-05!GO:0010008;endosome membrane;2.7578912327694e-05!GO:0009150;purine ribonucleotide metabolic process;2.85238073155906e-05!GO:0051789;response to protein stimulus;2.86894950896384e-05!GO:0006986;response to unfolded protein;2.86894950896384e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.95201828318948e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;2.9897158146953e-05!GO:0006612;protein targeting to membrane;3.04785794817018e-05!GO:0051287;NAD binding;3.17451178087174e-05!GO:0031968;organelle outer membrane;3.17698235840382e-05!GO:0042623;ATPase activity, coupled;3.31300581800707e-05!GO:0019867;outer membrane;3.41711145926269e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;3.41711145926269e-05!GO:0006754;ATP biosynthetic process;3.41715574734535e-05!GO:0006753;nucleoside phosphate metabolic process;3.41715574734535e-05!GO:0015078;hydrogen ion transmembrane transporter activity;3.9477917267162e-05!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.95430754503849e-05!GO:0009144;purine nucleoside triphosphate metabolic process;3.95430754503849e-05!GO:0009074;aromatic amino acid family catabolic process;4.06184808111114e-05!GO:0046034;ATP metabolic process;4.08854866714548e-05!GO:0007243;protein kinase cascade;4.28856390438639e-05!GO:0006916;anti-apoptosis;4.33528054845588e-05!GO:0007599;hemostasis;4.41597195927191e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.41597195927191e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.41597195927191e-05!GO:0005762;mitochondrial large ribosomal subunit;4.55273406653135e-05!GO:0000315;organellar large ribosomal subunit;4.55273406653135e-05!GO:0030170;pyridoxal phosphate binding;4.78676474187599e-05!GO:0007596;blood coagulation;4.9548366672778e-05!GO:0009141;nucleoside triphosphate metabolic process;5.25054781943205e-05!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;5.71456803794596e-05!GO:0045454;cell redox homeostasis;6.17921597310565e-05!GO:0000139;Golgi membrane;6.67238390231846e-05!GO:0043687;post-translational protein modification;6.70350058403005e-05!GO:0019899;enzyme binding;7.2578439560423e-05!GO:0005741;mitochondrial outer membrane;7.52873252804061e-05!GO:0009069;serine family amino acid metabolic process;7.54039557994848e-05!GO:0006953;acute-phase response;7.57907719913107e-05!GO:0016469;proton-transporting two-sector ATPase complex;7.70790555464856e-05!GO:0006725;aromatic compound metabolic process;7.71063748293208e-05!GO:0030867;rough endoplasmic reticulum membrane;7.74935348880575e-05!GO:0032561;guanyl ribonucleotide binding;8.18395280934297e-05!GO:0019001;guanyl nucleotide binding;8.18395280934297e-05!GO:0009152;purine ribonucleotide biosynthetic process;8.57575386049412e-05!GO:0000097;sulfur amino acid biosynthetic process;8.86272886089266e-05!GO:0050660;FAD binding;9.22332796700243e-05!GO:0005798;Golgi-associated vesicle;9.43850438124764e-05!GO:0050817;coagulation;0.000108822624727111!GO:0016044;membrane organization and biogenesis;0.000111711425747463!GO:0006364;rRNA processing;0.00011314623548009!GO:0050657;nucleic acid transport;0.00011314623548009!GO:0051236;establishment of RNA localization;0.00011314623548009!GO:0050658;RNA transport;0.00011314623548009!GO:0016769;transferase activity, transferring nitrogenous groups;0.000113800418827628!GO:0000314;organellar small ribosomal subunit;0.000117817963373529!GO:0005763;mitochondrial small ribosomal subunit;0.000117817963373529!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.000120868040781244!GO:0006635;fatty acid beta-oxidation;0.000122308424555798!GO:0016072;rRNA metabolic process;0.000177835235042134!GO:0006403;RNA localization;0.00017948236399337!GO:0000151;ubiquitin ligase complex;0.000189604101647859!GO:0005579;membrane attack complex;0.000194601080557973!GO:0051540;metal cluster binding;0.000198274027585797!GO:0051536;iron-sulfur cluster binding;0.000198274027585797!GO:0046394;carboxylic acid biosynthetic process;0.000198274027585797!GO:0016053;organic acid biosynthetic process;0.000198274027585797!GO:0042802;identical protein binding;0.000200053757623397!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000207475990761209!GO:0006558;L-phenylalanine metabolic process;0.000218845229019373!GO:0006559;L-phenylalanine catabolic process;0.000218845229019373!GO:0016564;transcription repressor activity;0.000220820590111672!GO:0032446;protein modification by small protein conjugation;0.000244041417221942!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000245832440056339!GO:0008026;ATP-dependent helicase activity;0.000288314281018501!GO:0015918;sterol transport;0.000288314281018501!GO:0030301;cholesterol transport;0.000288314281018501!GO:0043021;ribonucleoprotein binding;0.000302726672302787!GO:0043284;biopolymer biosynthetic process;0.000313852766741536!GO:0030532;small nuclear ribonucleoprotein complex;0.000327323163312451!GO:0008483;transaminase activity;0.000329597606626623!GO:0000245;spliceosome assembly;0.000335768723319472!GO:0008361;regulation of cell size;0.00033905213333438!GO:0031252;leading edge;0.000340059533562893!GO:0016567;protein ubiquitination;0.000355146585396198!GO:0005524;ATP binding;0.000365528262999765!GO:0032559;adenyl ribonucleotide binding;0.000368012787977258!GO:0042221;response to chemical stimulus;0.000368012787977258!GO:0006954;inflammatory response;0.000368012787977258!GO:0016049;cell growth;0.000378856989964574!GO:0044272;sulfur compound biosynthetic process;0.000383599182095522!GO:0006518;peptide metabolic process;0.000384650400055133!GO:0002449;lymphocyte mediated immunity;0.000409379752015833!GO:0001558;regulation of cell growth;0.000423320128427354!GO:0016903;oxidoreductase activity, acting on the aldehyde or oxo group of donors;0.000450828453357813!GO:0048471;perinuclear region of cytoplasm;0.000464305524220923!GO:0009064;glutamine family amino acid metabolic process;0.000494993645926022!GO:0003724;RNA helicase activity;0.000508666133428352!GO:0030133;transport vesicle;0.000550918241680424!GO:0005048;signal sequence binding;0.00055266165655734!GO:0044438;microbody part;0.000553517953329392!GO:0044439;peroxisomal part;0.000553517953329392!GO:0031324;negative regulation of cellular metabolic process;0.000590178713981033!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000616841682338862!GO:0015399;primary active transmembrane transporter activity;0.000616841682338862!GO:0042060;wound healing;0.000634970846358402!GO:0016705;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen;0.000635651662410627!GO:0004386;helicase activity;0.000647241605017421!GO:0046983;protein dimerization activity;0.000662648952366695!GO:0006959;humoral immune response;0.000676526186974795!GO:0046364;monosaccharide biosynthetic process;0.00067852190294151!GO:0046165;alcohol biosynthetic process;0.00067852190294151!GO:0046870;cadmium ion binding;0.000694349138255384!GO:0015036;disulfide oxidoreductase activity;0.000704232479061228!GO:0043566;structure-specific DNA binding;0.000719090572196808!GO:0006366;transcription from RNA polymerase II promoter;0.000723631509436629!GO:0009719;response to endogenous stimulus;0.000749384029025148!GO:0016746;transferase activity, transferring acyl groups;0.00076485550612725!GO:0033116;ER-Golgi intermediate compartment membrane;0.000795810839676188!GO:0006650;glycerophospholipid metabolic process;0.000801381118230887!GO:0008286;insulin receptor signaling pathway;0.00082354671122268!GO:0051028;mRNA transport;0.000850393797413512!GO:0009117;nucleotide metabolic process;0.000853378395736436!GO:0016747;transferase activity, transferring groups other than amino-acyl groups;0.000887411242028376!GO:0051920;peroxiredoxin activity;0.000918008312444985!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000919212559998546!GO:0006508;proteolysis;0.000924340843675697!GO:0006414;translational elongation;0.00108651871151045!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.00116562206090161!GO:0051539;4 iron, 4 sulfur cluster binding;0.00118104308522858!GO:0002684;positive regulation of immune system process;0.00118971403537936!GO:0031326;regulation of cellular biosynthetic process;0.00119951001821691!GO:0019843;rRNA binding;0.00120622171068859!GO:0030176;integral to endoplasmic reticulum membrane;0.00120760009815605!GO:0031903;microbody membrane;0.00124771832124781!GO:0005778;peroxisomal membrane;0.00124771832124781!GO:0019319;hexose biosynthetic process;0.00130798830898579!GO:0006417;regulation of translation;0.00133471459230834!GO:0019438;aromatic compound biosynthetic process;0.00133471459230834!GO:0006694;steroid biosynthetic process;0.0014270664473618!GO:0003713;transcription coactivator activity;0.00144448374972321!GO:0031960;response to corticosteroid stimulus;0.00147732498784749!GO:0051384;response to glucocorticoid stimulus;0.001479504771929!GO:0006749;glutathione metabolic process;0.00150264471858038!GO:0046474;glycerophospholipid biosynthetic process;0.00150322291599214!GO:0006879;cellular iron ion homeostasis;0.00151318064551987!GO:0055072;iron ion homeostasis;0.00151318064551987!GO:0002443;leukocyte mediated immunity;0.00151318064551987!GO:0008415;acyltransferase activity;0.00153348205520886!GO:0006487;protein amino acid N-linked glycosylation;0.0015780483397353!GO:0009066;aspartate family amino acid metabolic process;0.00157932809796606!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00158421638176548!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00158809775138482!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00158809775138482!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00158809775138482!GO:0048500;signal recognition particle;0.0016114257815186!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.00161970398011247!GO:0008206;bile acid metabolic process;0.00164653100404506!GO:0016197;endosome transport;0.00172518527407843!GO:0016408;C-acyltransferase activity;0.00173199515089679!GO:0051659;maintenance of mitochondrion localization;0.00179607285139324!GO:0051657;maintenance of organelle localization;0.00179607285139324!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.0018089439249871!GO:0043681;protein import into mitochondrion;0.00181692202589257!GO:0006793;phosphorus metabolic process;0.00181692202589257!GO:0006796;phosphate metabolic process;0.00181692202589257!GO:0043228;non-membrane-bound organelle;0.00181692202589257!GO:0043232;intracellular non-membrane-bound organelle;0.00181692202589257!GO:0016830;carbon-carbon lyase activity;0.00191933302724229!GO:0006259;DNA metabolic process;0.00192120401197545!GO:0016741;transferase activity, transferring one-carbon groups;0.00196025779888545!GO:0009892;negative regulation of metabolic process;0.0020317910615692!GO:0042627;chylomicron;0.00203353793183454!GO:0050778;positive regulation of immune response;0.00205864430046594!GO:0030127;COPII vesicle coat;0.00207825319887338!GO:0012507;ER to Golgi transport vesicle membrane;0.00207825319887338!GO:0009889;regulation of biosynthetic process;0.00208650845153117!GO:0009112;nucleobase metabolic process;0.00211380881472756!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00220435664467177!GO:0003746;translation elongation factor activity;0.00221750233622606!GO:0005774;vacuolar membrane;0.00223389480738955!GO:0030134;ER to Golgi transport vesicle;0.0022468272298846!GO:0001889;liver development;0.00229735925796874!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.00234286393516158!GO:0016859;cis-trans isomerase activity;0.00235861190401392!GO:0002250;adaptive immune response;0.00254616449257264!GO:0002460;adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains;0.00254616449257264!GO:0006090;pyruvate metabolic process;0.00259899959237219!GO:0004576;oligosaccharyl transferase activity;0.00260465616807897!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.00263585972786093!GO:0015923;mannosidase activity;0.00264817712825766!GO:0006778;porphyrin metabolic process;0.00270071469412579!GO:0033013;tetrapyrrole metabolic process;0.00270071469412579!GO:0002252;immune effector process;0.00270699996127979!GO:0005765;lysosomal membrane;0.00275121209865696!GO:0051427;hormone receptor binding;0.0027744223493175!GO:0009309;amine biosynthetic process;0.0028433849081043!GO:0004300;enoyl-CoA hydratase activity;0.00286210389365481!GO:0016779;nucleotidyltransferase activity;0.00300824842316778!GO:0006644;phospholipid metabolic process;0.00302510648102617!GO:0006767;water-soluble vitamin metabolic process;0.00303971637395645!GO:0002682;regulation of immune system process;0.00307082558291685!GO:0022890;inorganic cation transmembrane transporter activity;0.00311294700524607!GO:0043623;cellular protein complex assembly;0.00316044272847032!GO:0006643;membrane lipid metabolic process;0.00320703616366338!GO:0046467;membrane lipid biosynthetic process;0.00320703616366338!GO:0043492;ATPase activity, coupled to movement of substances;0.00322943854528556!GO:0003995;acyl-CoA dehydrogenase activity;0.00331892854083647!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00333400710087563!GO:0045047;protein targeting to ER;0.00333400710087563!GO:0008430;selenium binding;0.00347533524171409!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00348084068354936!GO:0005885;Arp2/3 protein complex;0.00348206086940076!GO:0048518;positive regulation of biological process;0.00356442620002608!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00358599153517794!GO:0016051;carbohydrate biosynthetic process;0.0036394221980314!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00373677926790043!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00375599536038505!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00375649254055965!GO:0016645;oxidoreductase activity, acting on the CH-NH group of donors;0.0038767027650374!GO:0007264;small GTPase mediated signal transduction;0.0039264421233937!GO:0009605;response to external stimulus;0.00400561955741119!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00410355092933821!GO:0007040;lysosome organization and biogenesis;0.004110234628388!GO:0008250;oligosaccharyl transferase complex;0.004110234628388!GO:0042559;pteridine and derivative biosynthetic process;0.00420418312713817!GO:0005577;fibrinogen complex;0.00435749939099068!GO:0051537;2 iron, 2 sulfur cluster binding;0.00436718135596437!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00446679060939979!GO:0030139;endocytic vesicle;0.00455516059724669!GO:0008186;RNA-dependent ATPase activity;0.00473960076664062!GO:0042558;pteridine and derivative metabolic process;0.00476501641906209!GO:0045947;negative regulation of translational initiation;0.00476501641906209!GO:0035257;nuclear hormone receptor binding;0.00476501641906209!GO:0030663;COPI coated vesicle membrane;0.00477041569476306!GO:0030126;COPI vesicle coat;0.00477041569476306!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00477041569476306!GO:0003697;single-stranded DNA binding;0.00481030882717371!GO:0006525;arginine metabolic process;0.00497478039506021!GO:0008312;7S RNA binding;0.00523894744953943!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00532825499749366!GO:0001666;response to hypoxia;0.00532825499749366!GO:0030658;transport vesicle membrane;0.00534102997871631!GO:0006891;intra-Golgi vesicle-mediated transport;0.00534102997871631!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00535887403911288!GO:0051235;maintenance of localization;0.0053621792652987!GO:0010033;response to organic substance;0.00539176537924906!GO:0031072;heat shock protein binding;0.00553621075902164!GO:0006897;endocytosis;0.00553621075902164!GO:0010324;membrane invagination;0.00553621075902164!GO:0004177;aminopeptidase activity;0.00557635617867637!GO:0000049;tRNA binding;0.00567929882744931!GO:0009991;response to extracellular stimulus;0.00574115883272763!GO:0051168;nuclear export;0.00601319263763338!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00602609649182991!GO:0044271;nitrogen compound biosynthetic process;0.00607570831505919!GO:0006595;polyamine metabolic process;0.00624611652005592!GO:0006094;gluconeogenesis;0.00627253890180401!GO:0000041;transition metal ion transport;0.00631575587946197!GO:0030132;clathrin coat of coated pit;0.00650057121017344!GO:0042168;heme metabolic process;0.00680574750562231!GO:0005905;coated pit;0.00683465188960781!GO:0004029;aldehyde dehydrogenase (NAD) activity;0.00689002518247096!GO:0006572;tyrosine catabolic process;0.00717062773187445!GO:0030569;chymotrypsin inhibitor activity;0.0072652531711162!GO:0008168;methyltransferase activity;0.00736808053447051!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00760730569131686!GO:0044437;vacuolar part;0.00766457023571583!GO:0006626;protein targeting to mitochondrion;0.00787876814592512!GO:0030433;ER-associated protein catabolic process;0.00790646419497409!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.00790646419497409!GO:0005624;membrane fraction;0.00797860616459571!GO:0006402;mRNA catabolic process;0.00801566150265561!GO:0051716;cellular response to stimulus;0.0081143652629955!GO:0050776;regulation of immune response;0.00820935443013233!GO:0006658;phosphatidylserine metabolic process;0.00827955638059695!GO:0006693;prostaglandin metabolic process;0.00828189795560552!GO:0006692;prostanoid metabolic process;0.00828189795560552!GO:0031970;organelle envelope lumen;0.00896831678451742!GO:0006534;cysteine metabolic process;0.00896831678451742!GO:0046489;phosphoinositide biosynthetic process;0.00902693453822289!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00914619767624693!GO:0015002;heme-copper terminal oxidase activity;0.00914619767624693!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00914619767624693!GO:0004129;cytochrome-c oxidase activity;0.00914619767624693!GO:0051346;negative regulation of hydrolase activity;0.00919155891827738!GO:0031406;carboxylic acid binding;0.00921203225305404!GO:0043488;regulation of mRNA stability;0.00921244310410389!GO:0043487;regulation of RNA stability;0.00921244310410389!GO:0010035;response to inorganic substance;0.00962030832194827!GO:0009081;branched chain family amino acid metabolic process;0.0096491046573852!GO:0006555;methionine metabolic process;0.0096491046573852!GO:0015035;protein disulfide oxidoreductase activity;0.00970107418628357!GO:0040008;regulation of growth;0.00981981535554724!GO:0044242;cellular lipid catabolic process;0.00998524848265768!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00999034546482268!GO:0018196;peptidyl-asparagine modification;0.0101681437388417!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0101681437388417!GO:0016885;ligase activity, forming carbon-carbon bonds;0.0101681437388417!GO:0005758;mitochondrial intermembrane space;0.0101892479620483!GO:0004004;ATP-dependent RNA helicase activity;0.0102072521582845!GO:0003690;double-stranded DNA binding;0.0102312546488841!GO:0006022;aminoglycan metabolic process;0.0104379351240309!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0104471562976527!GO:0015924;mannosyl-oligosaccharide mannosidase activity;0.0104486939394617!GO:0030880;RNA polymerase complex;0.0104702721816502!GO:0007006;mitochondrial membrane organization and biogenesis;0.0105383134992549!GO:0006984;ER-nuclear signaling pathway;0.0105665212100875!GO:0000267;cell fraction;0.0107941168984057!GO:0030036;actin cytoskeleton organization and biogenesis;0.0113148067787885!GO:0019216;regulation of lipid metabolic process;0.0115122037647781!GO:0051087;chaperone binding;0.0118209696457432!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.011868105333837!GO:0006810;transport;0.011974293226533!GO:0016563;transcription activator activity;0.0123376752057891!GO:0005159;insulin-like growth factor receptor binding;0.0128070107504427!GO:0018193;peptidyl-amino acid modification;0.0128256840855624!GO:0006839;mitochondrial transport;0.0128604672302182!GO:0046146;tetrahydrobiopterin metabolic process;0.0128623509630319!GO:0051101;regulation of DNA binding;0.0136136971664165!GO:0042158;lipoprotein biosynthetic process;0.0137426912290877!GO:0006081;aldehyde metabolic process;0.013841807621352!GO:0048487;beta-tubulin binding;0.0139473731286617!GO:0050878;regulation of body fluid levels;0.0140338397988829!GO:0030660;Golgi-associated vesicle membrane;0.0140338397988829!GO:0016310;phosphorylation;0.0141342865814005!GO:0008139;nuclear localization sequence binding;0.0144206009846093!GO:0006563;L-serine metabolic process;0.0149127138061329!GO:0016709;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen;0.0150663401868066!GO:0009067;aspartate family amino acid biosynthetic process;0.0151396167958585!GO:0004364;glutathione transferase activity;0.015344776167867!GO:0031301;integral to organelle membrane;0.0155763577339138!GO:0007033;vacuole organization and biogenesis;0.0156032593832394!GO:0005507;copper ion binding;0.0157595371322922!GO:0009165;nucleotide biosynthetic process;0.0158601027424322!GO:0031902;late endosome membrane;0.0159253089269201!GO:0006766;vitamin metabolic process;0.0163224827919917!GO:0003729;mRNA binding;0.0169620190117294!GO:0016620;oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;0.0171151551720589!GO:0016860;intramolecular oxidoreductase activity;0.0178628991417922!GO:0000050;urea cycle;0.0183062836990378!GO:0043603;amide metabolic process;0.0183062836990378!GO:0019627;urea metabolic process;0.0183062836990378!GO:0030203;glycosaminoglycan metabolic process;0.0183875251464584!GO:0006633;fatty acid biosynthetic process;0.018482308332558!GO:0009070;serine family amino acid biosynthetic process;0.0185987918252773!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.0190922854623709!GO:0006720;isoprenoid metabolic process;0.0194898893951898!GO:0016712;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen;0.01993940865408!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0200473926893339!GO:0000428;DNA-directed RNA polymerase complex;0.0200473926893339!GO:0035035;histone acetyltransferase binding;0.0201962426830952!GO:0003756;protein disulfide isomerase activity;0.0203098814824252!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0203098814824252!GO:0055088;lipid homeostasis;0.0204153144495339!GO:0008632;apoptotic program;0.020419280130194!GO:0001726;ruffle;0.0204450394302316!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0204623774550898!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0204623774550898!GO:0030212;hyaluronan metabolic process;0.0205742292122176!GO:0051651;maintenance of cellular localization;0.0206925501364983!GO:0006354;RNA elongation;0.0210320029416474!GO:0043065;positive regulation of apoptosis;0.021040827694476!GO:0016811;hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides;0.0217504557721279!GO:0015682;ferric iron transport;0.0218953230622676!GO:0015091;ferric iron transmembrane transporter activity;0.0218953230622676!GO:0031643;positive regulation of myelination;0.0218953230622676!GO:0051234;establishment of localization;0.0228030799810838!GO:0006509;membrane protein ectodomain proteolysis;0.0228030799810838!GO:0033619;membrane protein proteolysis;0.0228030799810838!GO:0006401;RNA catabolic process;0.0228223025964702!GO:0009083;branched chain family amino acid catabolic process;0.0228427891516274!GO:0030137;COPI-coated vesicle;0.0229354898241104!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0230984442879526!GO:0000062;acyl-CoA binding;0.0231981725235286!GO:0031667;response to nutrient levels;0.0233906512413249!GO:0005769;early endosome;0.0235824351896224!GO:0046395;carboxylic acid catabolic process;0.0236987357493715!GO:0016054;organic acid catabolic process;0.0236987357493715!GO:0046904;calcium oxalate binding;0.0237158119002941!GO:0030568;plasmin inhibitor activity;0.0237158119002941!GO:0007034;vacuolar transport;0.0243355611760289!GO:0065008;regulation of biological quality;0.0244397018358668!GO:0006974;response to DNA damage stimulus;0.0245861366650165!GO:0050748;negative regulation of lipoprotein metabolic process;0.0247793614039856!GO:0048522;positive regulation of cellular process;0.0247793614039856!GO:0006779;porphyrin biosynthetic process;0.0249872957724342!GO:0033014;tetrapyrrole biosynthetic process;0.0249872957724342!GO:0045045;secretory pathway;0.0250714066450363!GO:0006611;protein export from nucleus;0.0250714066450363!GO:0043022;ribosome binding;0.025731849425936!GO:0050749;apolipoprotein E receptor binding;0.0257761465359545!GO:0000059;protein import into nucleus, docking;0.0257761465359545!GO:0065009;regulation of a molecular function;0.0258360907215839!GO:0044275;cellular carbohydrate catabolic process;0.026181764429889!GO:0043068;positive regulation of programmed cell death;0.0264128836982334!GO:0006596;polyamine biosynthetic process;0.0265697349305099!GO:0006026;aminoglycan catabolic process;0.0267340457990416!GO:0006027;glycosaminoglycan catabolic process;0.0267340457990416!GO:0051252;regulation of RNA metabolic process;0.0273894013302385!GO:0031300;intrinsic to organelle membrane;0.0277397551429977!GO:0043433;negative regulation of transcription factor activity;0.0279454687493656!GO:0050811;GABA receptor binding;0.0280686227359818!GO:0007031;peroxisome organization and biogenesis;0.0281877081038503!GO:0016835;carbon-oxygen lyase activity;0.0282564134599812!GO:0003899;DNA-directed RNA polymerase activity;0.0288872842402522!GO:0016836;hydro-lyase activity;0.0288872842402522!GO:0007030;Golgi organization and biogenesis;0.0290155613210775!GO:0031647;regulation of protein stability;0.0294086710579284!GO:0016568;chromatin modification;0.0294775765329127!GO:0009725;response to hormone stimulus;0.0299303255831746!GO:0015205;nucleobase transmembrane transporter activity;0.0299684144126616!GO:0005869;dynactin complex;0.0300324186797433!GO:0015886;heme transport;0.0304538540382644!GO:0030659;cytoplasmic vesicle membrane;0.0306498627033957!GO:0004448;isocitrate dehydrogenase activity;0.0310338830698871!GO:0016407;acetyltransferase activity;0.0322233747137104!GO:0016421;CoA carboxylase activity;0.0322844934770073!GO:0016840;carbon-nitrogen lyase activity;0.0324884580968528!GO:0000060;protein import into nucleus, translocation;0.0325085357753449!GO:0008320;protein transmembrane transporter activity;0.0325085357753449!GO:0031625;ubiquitin protein ligase binding;0.0325682532172773!GO:0017166;vinculin binding;0.0326830076315004!GO:0006733;oxidoreduction coenzyme metabolic process;0.0327375958119401!GO:0030193;regulation of blood coagulation;0.0332813406903168!GO:0030118;clathrin coat;0.0333065701749248!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0337478374925877!GO:0004372;glycine hydroxymethyltransferase activity;0.0341893210214986!GO:0006007;glucose catabolic process;0.0342924094205055!GO:0006642;triacylglycerol mobilization;0.0342958250177841!GO:0046487;glyoxylate metabolic process;0.0342958250177841!GO:0009086;methionine biosynthetic process;0.0344429883239532!GO:0047115;trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity;0.0349305110382936!GO:0001887;selenium metabolic process;0.03528127264519!GO:0016481;negative regulation of transcription;0.0355375924349187!GO:0005784;translocon complex;0.0357754197073307!GO:0030518;steroid hormone receptor signaling pathway;0.0359511717473757!GO:0016788;hydrolase activity, acting on ester bonds;0.0364198281150296!GO:0008538;proteasome activator activity;0.0367863494072188!GO:0006706;steroid catabolic process;0.0369552074325177!GO:0050591;quinine 3-monooxygenase activity;0.0369869780444996!GO:0033780;taurochenodeoxycholate 6alpha-hydroxylase activity;0.0369869780444996!GO:0012506;vesicle membrane;0.0372416098038402!GO:0043094;metabolic compound salvage;0.0374757508415705!GO:0033554;cellular response to stress;0.0374757508415705!GO:0004571;mannosyl-oligosaccharide 1,2-alpha-mannosidase activity;0.0374757508415705!GO:0002018;renin-angiotensin regulation of aldosterone production;0.0374757508415705!GO:0048143;astrocyte activation;0.0374757508415705!GO:0046622;positive regulation of organ growth;0.0374757508415705!GO:0031701;angiotensin receptor binding;0.0374757508415705!GO:0031703;type 2 angiotensin receptor binding;0.0374757508415705!GO:0045723;positive regulation of fatty acid biosynthetic process;0.0374757508415705!GO:0001999;renal response to blood flow during renin-angiotensin regulation of systemic arterial blood pressure;0.0374757508415705!GO:0042756;drinking behavior;0.0374757508415705!GO:0002019;angiotensin mediated regulation of renal output;0.0374757508415705!GO:0031702;type 1 angiotensin receptor binding;0.0374757508415705!GO:0001998;angiotensin mediated vasoconstriction involved in regulation of systemic arterial blood pressure;0.0374757508415705!GO:0045239;tricarboxylic acid cycle enzyme complex;0.0380319139356498!GO:0009225;nucleotide-sugar metabolic process;0.0383231733596809!GO:0003812;alternative-complement-pathway C3/C5 convertase activity;0.0384121782642917!GO:0030521;androgen receptor signaling pathway;0.0394091361506633!GO:0042364;water-soluble vitamin biosynthetic process;0.0395788773007273!GO:0051179;localization;0.0400536063343435!GO:0003711;transcription elongation regulator activity;0.0405325196752694!GO:0035258;steroid hormone receptor binding;0.0413308009828729!GO:0006527;arginine catabolic process;0.0413308009828729!GO:0030968;unfolded protein response;0.0416633744320034!GO:0031663;lipopolysaccharide-mediated signaling pathway;0.0417507152068236!GO:0008092;cytoskeletal protein binding;0.041955908075448!GO:0006206;pyrimidine base metabolic process;0.042500388863928!GO:0045185;maintenance of protein localization;0.0427352156799761!GO:0006729;tetrahydrobiopterin biosynthetic process;0.0427705567699636!GO:0008172;S-methyltransferase activity;0.0428756001348297!GO:0016831;carboxy-lyase activity;0.0432489822115868!GO:0019835;cytolysis;0.0436483352008529!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0437983153916526!GO:0031668;cellular response to extracellular stimulus;0.0438153662306577!GO:0050327;testosterone 17-beta-dehydrogenase activity;0.0440100460655069!GO:0045786;negative regulation of progression through cell cycle;0.0440920161214715!GO:0008383;manganese superoxide dismutase activity;0.044486176047262!GO:0001315;age-dependent response to reactive oxygen species;0.044486176047262!GO:0045540;regulation of cholesterol biosynthetic process;0.0448916380114017!GO:0006497;protein amino acid lipidation;0.0449860913179605!GO:0004559;alpha-mannosidase activity;0.0450357012204954!GO:0008299;isoprenoid biosynthetic process;0.0450695188034256!GO:0009116;nucleoside metabolic process;0.0452837781638948!GO:0030384;phosphoinositide metabolic process;0.0458385382000371!GO:0004873;asialoglycoprotein receptor activity;0.0458932805337117!GO:0003985;acetyl-CoA C-acetyltransferase activity;0.045990849901249!GO:0008629;induction of apoptosis by intracellular signals;0.0461436440372834!GO:0048659;smooth muscle cell proliferation;0.0464729584754481!GO:0032507;maintenance of cellular protein localization;0.0465298475541027!GO:0032940;secretion by cell;0.04726376605597!GO:0033344;cholesterol efflux;0.0473320457853567!GO:0051248;negative regulation of protein metabolic process;0.0474643953203933!GO:0050818;regulation of coagulation;0.0487055808562584!GO:0000305;response to oxygen radical;0.0488697626737615!GO:0016791;phosphoric monoester hydrolase activity;0.0489217496006278!GO:0030029;actin filament-based process;0.0498359856752125
 |sample_id=10018
 |sample_note=
@@ Line 76: / Line 100: @@
 |sample_tissue=liver
 |top_motifs=HNF4A_NR2F1,2:7.59119346164;HNF1A:7.40511652491;FOXA2:5.98156801907;RXR{A,B,G}_{NR1H2,PPAR}dimers:5.30920657163;STAT2,4,6:3.7798539852;FOX{F1,F2,J1}:3.42554693105;NR6A1:3.37135638786;AR:3.19328770333;MTF1:2.03587229468;NR1H4:1.996798921;TFCP2:1.97918702698;CUX2:1.87306334789;ADNP_IRX_SIX_ZHX:1.79371329043;ATF6:1.68232104514;ALX4:1.66571073999;FOX{D1,D2}:1.53317791238;ARID5B:1.48389060114;HLF:1.40989846837;NFE2L1:1.40312159718;PPARG:1.39916423986;MYOD1:1.31625137098;GATA6:1.30606143913;BPTF:1.29641709671;bHLH_family:1.26845140762;FOXM1:1.26295707544;NFIL3:1.24191325626;CEBPA,B_DDIT3:1.22601962922;ZNF423:1.18098437804;RXR{A,B,G}:1.15223342317;EVI1:1.08773170473;HIF1A:1.02959684196;SNAI1..3:1.00319179005;TBP:0.981071680573;MAFB:0.964255797269;PAX1,9:0.960772951814;SMAD1..7,9:0.90598950732;T:0.900544266715;FOXD3:0.876014791867;NR5A1,2:0.85950159368;ZEB1:0.806696189654;POU6F1:0.764703594543;DBP:0.749664577143;TAL1_TCF{3,4,12}:0.738089038856;IRF7:0.732731917762;GCM1,2:0.723315510649;TLX2:0.700254192516;SP1:0.694190936133;FOXQ1:0.653646429786;NKX3-2:0.649264148709;CRX:0.635640114793;TLX1..3_NFIC{dimer}:0.631441139092;RORA:0.621767934177;HIC1:0.569919557908;MAZ:0.498373524916;FOX{I1,J2}:0.488998472611;RBPJ:0.461549026582;EP300:0.448039300164;HAND1,2:0.366184956182;PAX5:0.355655075602;HOX{A4,D4}:0.297697754746;STAT1,3:0.265794023654;LMO2:0.256030406303;RXRA_VDR{dimer}:0.230206042234;MED-1{core}:0.186032437487;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.178694266789;PDX1:0.176353490131;MYFfamily:0.17489072014;MTE{core}:0.136863621003;IRF1,2:0.11089633492;ESR1:0.105103885873;PATZ1:0.09959256579;NFATC1..3:0.0952317494529;ESRRA:0.0924002555323;NKX2-1,4:0.0867108864091;NHLH1,2:0.0465768669099;SREBF1,2:0.0323830764075;GLI1..3:0.01518625243;IKZF1:-0.0243975869094;ELF1,2,4:-0.0323339021965;ZNF238:-0.0395392343738;ETS1,2:-0.055757316488;ZNF143:-0.0560386601365;SPIB:-0.0628684293733;SPI1:-0.139247936178;YY1:-0.175939665253;PAX6:-0.176953260693;TFAP2{A,C}:-0.176971526624;FOXP3:-0.189711776425;GFI1:-0.196572424645;UFEwm:-0.204527557034;PAX2:-0.273423673866;AIRE:-0.273918316238;HES1:-0.278109972898;ZNF148:-0.282464121164;ALX1:-0.293831122358;ATF5_CREB3:-0.295372408046;HMX1:-0.299509342438;TBX4,5:-0.32813820631;SOX{8,9,10}:-0.335608818029;PAX4:-0.346730792;NFIX:-0.349937270942;GTF2I:-0.366206919103;MYBL2:-0.367983505112;EGR1..3:-0.375486470919;FOXN1:-0.37736447835;ONECUT1,2:-0.380837908769;TGIF1:-0.384671721053;SRF:-0.403032858202;REST:-0.405290579798;EBF1:-0.416326694089;NFKB1_REL_RELA:-0.432615904886;TEAD1:-0.459970842922;NFY{A,B,C}:-0.476062497922;SOX5:-0.484923182344;VSX1,2:-0.486775297526;RUNX1..3:-0.491321013916;MEF2{A,B,C,D}:-0.495829091539;ATF2:-0.5002732691;NFE2:-0.502137289899;GZF1:-0.514124190291;TFAP4:-0.524648056158;FOXL1:-0.560073343283;IKZF2:-0.56163138836;GTF2A1,2:-0.583703145898;KLF4:-0.585716561356;ATF4:-0.605062565958;TFAP2B:-0.60762705543;JUN:-0.613636795759;EN1,2:-0.630974186736;PBX1:-0.635495559128;ZBTB6:-0.659131934708;HMGA1,2:-0.668546335262;ZFP161:-0.70662849589;HOX{A5,B5}:-0.725091370927;FOXO1,3,4:-0.739578441057;TP53:-0.743984194409;NFE2L2:-0.767965682914;DMAP1_NCOR{1,2}_SMARC:-0.770377322177;ELK1,4_GABP{A,B1}:-0.773690216917;RREB1:-0.793426623228;STAT5{A,B}:-0.79417209953;GATA4:-0.802376528422;GFI1B:-0.818883430816;PAX3,7:-0.831298823727;FOS_FOS{B,L1}_JUN{B,D}:-0.835382593793;NR3C1:-0.844477543779;FOSL2:-0.845471602468;LEF1_TCF7_TCF7L1,2:-0.862207355781;PRDM1:-0.868531074314;BACH2:-0.872075252513;AHR_ARNT_ARNT2:-0.912593786998;HOX{A6,A7,B6,B7}:-0.937487552274;NKX2-2,8:-0.971055583115;XCPE1{core}:-0.998816468326;TEF:-1.00573808063;BREu{core}:-1.02711466626;NRF1:-1.03674499538;LHX3,4:-1.05236517649;CREB1:-1.06755304042;SOX17:-1.06802028713;HOXA9_MEIS1:-1.12402364497;XBP1:-1.18037621299;MZF1:-1.19568138909;SPZ1:-1.21608003266;E2F1..5:-1.21647358988;NANOG{mouse}:-1.22628072308;NANOG:-1.25698868308;ZIC1..3:-1.27288133185;POU2F1..3:-1.28647257119;CDX1,2,4:-1.40708230458;RFX2..5_RFXANK_RFXAP:-1.41746864782;PRRX1,2:-1.4216685693;RFX1:-1.42856394029;POU5F1:-1.43134304915;MYB:-1.46529043507;OCT4_SOX2{dimer}:-1.49383820767;ZBTB16:-1.50468235394;TOPORS:-1.58031701936;FOXP1:-1.61227522614;HSF1,2:-1.62355108818;TFDP1:-1.62570895145;PITX1..3:-1.66073047364;SOX2:-1.74496952087;NKX6-1,2:-1.77246897765;POU1F1:-1.84988946453;NKX2-3_NKX2-5:-1.85232055874;POU3F1..4:-1.85318094535;HBP1_HMGB_SSRP1_UBTF:-1.90296129464;CDC5L:-2.03376374275;NKX3-1:-2.28366528284;ZNF384:-2.70581204851;PAX8:-2.84427591786
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10018-101C9;search_select_hide=table117:FF:10018-101C9
 }}

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FF:10018-101C9: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 12:14, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0