FF:10022-101D4: Difference between revisions
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{{f5samples | {{f5samples | ||
| | |DRA_sample_Accession=CAGE@SAMD00005501 | ||
|HumanCAGEScanFiles=NCig10021;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/prostate%252c%2520adult%252c%2520pool1.NCig10021.10022-101D4.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/prostate%252c%2520adult%252c%2520pool1.NCig10021.10022-101D4.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/prostate%252c%2520adult%252c%2520pool1.NCig10021.10022-101D4.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/prostate%252c%2520adult%252c%2520pool1.NCig10021.10022-101D4.hg19.GCTATA.pairs.bed.gz | |||
|accession_numbers=CAGE;DRX008713;DRR009585;DRZ001010;DRZ002395;DRZ012360;DRZ013745 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0002367,UBERON:0000479,UBERON:0005156,UBERON:0004119,UBERON:0000062,UBERON:0004120,UBERON:0000077,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002530,UBERON:0010147,UBERON:0010317,UBERON:0003937,UBERON:0005399,UBERON:0003101,UBERON:0000079 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010022 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/prostate%252c%2520adult%252c%2520pool1.CNhs10628.10022-101D4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/prostate%252c%2520adult%252c%2520pool1.CNhs10628.10022-101D4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/prostate%252c%2520adult%252c%2520pool1.CNhs10628.10022-101D4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/prostate%252c%2520adult%252c%2520pool1.CNhs10628.10022-101D4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/prostate%252c%2520adult%252c%2520pool1.CNhs10628.10022-101D4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10022-101D4 | |id=FF:10022-101D4 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0010022 | ||
|is_obsolete= | |||
|library_id=CNhs10628 | |||
|library_id_phase_based=2:CNhs10628 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10022 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10022 | |||
|name=prostate, adult, pool1 | |name=prostate, adult, pool1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 62: | ||
|profile_cagescan=NCig10021,,, | |profile_cagescan=NCig10021,,, | ||
|profile_hcage=CNhs10628,LSID657,release008,COMPLETED | |profile_hcage=CNhs10628,LSID657,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=101 | |rna_box=101 | ||
|rna_catalog_number=Cat:AM6000 Lot:0910061 -13 | |rna_catalog_number=Cat:AM6000 Lot:0910061 -13 | ||
| Line 57: | Line 80: | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age= | |sample_age= | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 93: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.01636449620233e-222!GO:0005737;cytoplasm;2.95065268987871e-163!GO:0043226;organelle;8.25203607054968e-140!GO:0043229;intracellular organelle;1.99296400461243e-139!GO:0043227;membrane-bound organelle;1.14166848610682e-130!GO:0043231;intracellular membrane-bound organelle;1.1639904047788e-130!GO:0005515;protein binding;3.29085988164047e-103!GO:0044444;cytoplasmic part;3.58099347359078e-102!GO:0044422;organelle part;1.06090864613992e-72!GO:0044446;intracellular organelle part;2.59213955302619e-71!GO:0032991;macromolecular complex;1.5243811332375e-57!GO:0044238;primary metabolic process;1.26332802333356e-52!GO:0043170;macromolecule metabolic process;3.71565737323355e-52!GO:0044237;cellular metabolic process;2.68269775016616e-50!GO:0005634;nucleus;2.8323211317649e-49!GO:0030529;ribonucleoprotein complex;1.34535196450257e-48!GO:0003723;RNA binding;9.24746559070118e-45!GO:0043233;organelle lumen;1.93750656823299e-42!GO:0031974;membrane-enclosed lumen;1.93750656823299e-42!GO:0016043;cellular component organization and biogenesis;2.4117769602879e-42!GO:0044428;nuclear part;1.02259654921533e-39!GO:0033036;macromolecule localization;1.28059636203718e-38!GO:0015031;protein transport;4.57651200056852e-37!GO:0019538;protein metabolic process;6.01440800249154e-36!GO:0008104;protein localization;6.01440800249154e-36!GO:0045184;establishment of protein localization;7.07182503788688e-36!GO:0005739;mitochondrion;4.81866484321242e-34!GO:0031090;organelle membrane;6.44674460095991e-32!GO:0044260;cellular macromolecule metabolic process;3.36321930936236e-31!GO:0010467;gene expression;3.89244452882329e-31!GO:0044267;cellular protein metabolic process;3.06253311320893e-30!GO:0005829;cytosol;1.97713196266142e-29!GO:0043234;protein complex;2.18362562722736e-29!GO:0043283;biopolymer metabolic process;1.78636761272957e-28!GO:0005840;ribosome;2.5286646067442e-28!GO:0046907;intracellular transport;1.11224140651712e-27!GO:0016071;mRNA metabolic process;1.69936518971189e-27!GO:0006412;translation;4.70644248042108e-27!GO:0031981;nuclear lumen;1.43748335152359e-25!GO:0008380;RNA splicing;2.81633796476317e-25!GO:0006396;RNA processing;3.31824780747062e-25!GO:0006886;intracellular protein transport;2.06527012337768e-24!GO:0003735;structural constituent of ribosome;3.21357445142537e-24!GO:0044429;mitochondrial part;1.75168780389521e-23!GO:0008134;transcription factor binding;4.32251105733515e-23!GO:0031967;organelle envelope;8.7221429793965e-23!GO:0031975;envelope;1.29344937184615e-22!GO:0006397;mRNA processing;2.34109993438038e-22!GO:0065003;macromolecular complex assembly;8.04425356048051e-22!GO:0033279;ribosomal subunit;1.10343172398058e-21!GO:0022607;cellular component assembly;1.22834209708739e-20!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.17293685731825e-20!GO:0051649;establishment of cellular localization;2.52717736912492e-18!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.84283483581022e-18!GO:0051641;cellular localization;4.2573135540239e-18!GO:0009059;macromolecule biosynthetic process;4.91361612826894e-18!GO:0048770;pigment granule;1.30178616592784e-17!GO:0042470;melanosome;1.30178616592784e-17!GO:0005681;spliceosome;2.04534299930897e-17!GO:0050794;regulation of cellular process;6.72284068670638e-17!GO:0005654;nucleoplasm;1.63087479487422e-16!GO:0050789;regulation of biological process;3.04456421604698e-16!GO:0016192;vesicle-mediated transport;4.38595433636513e-16!GO:0006996;organelle organization and biogenesis;4.87514835502715e-16!GO:0022613;ribonucleoprotein complex biogenesis and assembly;5.80946598418394e-16!GO:0005783;endoplasmic reticulum;5.81122768372601e-16!GO:0044249;cellular biosynthetic process;7.15968369806664e-16!GO:0044445;cytosolic part;8.05418021551712e-16!GO:0016070;RNA metabolic process;8.75591157161684e-16!GO:0005740;mitochondrial envelope;1.20830740411143e-15!GO:0048523;negative regulation of cellular process;1.47053692190567e-15!GO:0009058;biosynthetic process;1.48118057380969e-15!GO:0043228;non-membrane-bound organelle;1.81492305511031e-15!GO:0043232;intracellular non-membrane-bound organelle;1.81492305511031e-15!GO:0031966;mitochondrial membrane;5.35968367924832e-15!GO:0006119;oxidative phosphorylation;5.67304402294112e-15!GO:0005794;Golgi apparatus;1.17849823126072e-14!GO:0044451;nucleoplasm part;1.28198521061202e-14!GO:0003712;transcription cofactor activity;1.32239943430189e-14!GO:0019866;organelle inner membrane;1.51411583400404e-14!GO:0022618;protein-RNA complex assembly;8.17133033855453e-14!GO:0012505;endomembrane system;1.13066724105675e-13!GO:0048193;Golgi vesicle transport;1.37840832255322e-13!GO:0005743;mitochondrial inner membrane;1.40671485747533e-13!GO:0048519;negative regulation of biological process;1.58060247774765e-13!GO:0006457;protein folding;1.78692637076855e-13!GO:0003676;nucleic acid binding;4.61384391060612e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;1.08822294047548e-12!GO:0006366;transcription from RNA polymerase II promoter;1.24794904381785e-12!GO:0006605;protein targeting;1.36774512548417e-12!GO:0006512;ubiquitin cycle;1.83831627991114e-12!GO:0006511;ubiquitin-dependent protein catabolic process;1.96990987995265e-12!GO:0015935;small ribosomal subunit;1.98089959247766e-12!GO:0019941;modification-dependent protein catabolic process;2.10918941382434e-12!GO:0043632;modification-dependent macromolecule catabolic process;2.10918941382434e-12!GO:0012501;programmed cell death;3.95045928758822e-12!GO:0044257;cellular protein catabolic process;4.43423152491566e-12!GO:0016564;transcription repressor activity;5.75032852617457e-12!GO:0065007;biological regulation;6.16243145887498e-12!GO:0006915;apoptosis;8.47477662528965e-12!GO:0031988;membrane-bound vesicle;8.67379622854046e-12!GO:0000166;nucleotide binding;1.15501742620256e-11!GO:0031982;vesicle;1.1591907329552e-11!GO:0008135;translation factor activity, nucleic acid binding;1.98532055693511e-11!GO:0008219;cell death;2.09198769658561e-11!GO:0016265;death;2.09198769658561e-11!GO:0016023;cytoplasmic membrane-bound vesicle;2.10618576149839e-11!GO:0005746;mitochondrial respiratory chain;2.17924655464567e-11!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;2.35435489668927e-11!GO:0031410;cytoplasmic vesicle;3.1996234732504e-11!GO:0044265;cellular macromolecule catabolic process;4.13346418356445e-11!GO:0016874;ligase activity;5.83033267266733e-11!GO:0044455;mitochondrial membrane part;7.50637944681067e-11!GO:0043285;biopolymer catabolic process;8.7214674607746e-11!GO:0008092;cytoskeletal protein binding;1.42393898800017e-10!GO:0050136;NADH dehydrogenase (quinone) activity;1.55311086771456e-10!GO:0003954;NADH dehydrogenase activity;1.55311086771456e-10!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.55311086771456e-10!GO:0016462;pyrophosphatase activity;1.55311086771456e-10!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.61521927962751e-10!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.73746446393441e-10!GO:0000502;proteasome complex (sensu Eukaryota);2.0928925929887e-10!GO:0016817;hydrolase activity, acting on acid anhydrides;2.17484436136415e-10!GO:0015934;large ribosomal subunit;2.58163145797128e-10!GO:0006913;nucleocytoplasmic transport;2.64146175879434e-10!GO:0043412;biopolymer modification;2.70373585841563e-10!GO:0030036;actin cytoskeleton organization and biogenesis;2.72152971202319e-10!GO:0031980;mitochondrial lumen;2.9027911761719e-10!GO:0005759;mitochondrial matrix;2.9027911761719e-10!GO:0044432;endoplasmic reticulum part;3.27950601372652e-10!GO:0030163;protein catabolic process;4.30409567778544e-10!GO:0043687;post-translational protein modification;6.42871944163142e-10!GO:0017111;nucleoside-triphosphatase activity;7.23949659413263e-10!GO:0051169;nuclear transport;7.64032769512782e-10!GO:0006464;protein modification process;8.57806249898342e-10!GO:0005793;ER-Golgi intermediate compartment;1.2945562403083e-09!GO:0016604;nuclear body;2.14369965100969e-09!GO:0005730;nucleolus;2.30710469675669e-09!GO:0051082;unfolded protein binding;2.34172309651077e-09!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.50207053869528e-09!GO:0003743;translation initiation factor activity;2.56338381755475e-09!GO:0030029;actin filament-based process;2.86924105795164e-09!GO:0008565;protein transporter activity;3.19312640638321e-09!GO:0006461;protein complex assembly;3.61302528846935e-09!GO:0044248;cellular catabolic process;6.9102018884814e-09!GO:0006446;regulation of translational initiation;8.27473697475987e-09!GO:0030964;NADH dehydrogenase complex (quinone);8.77127951495203e-09!GO:0045271;respiratory chain complex I;8.77127951495203e-09!GO:0005747;mitochondrial respiratory chain complex I;8.77127951495203e-09!GO:0000398;nuclear mRNA splicing, via spliceosome;8.87339481562692e-09!GO:0000375;RNA splicing, via transesterification reactions;8.87339481562692e-09!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;8.87339481562692e-09!GO:0042775;organelle ATP synthesis coupled electron transport;9.44548593560474e-09!GO:0042773;ATP synthesis coupled electron transport;9.44548593560474e-09!GO:0031324;negative regulation of cellular metabolic process;9.59122459231039e-09!GO:0016607;nuclear speck;1.09009554297619e-08!GO:0006413;translational initiation;1.11824521973495e-08!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.36114395653822e-08!GO:0009057;macromolecule catabolic process;1.36865118194015e-08!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.63469607940546e-08!GO:0016481;negative regulation of transcription;1.91038727717371e-08!GO:0003714;transcription corepressor activity;2.03803987720375e-08!GO:0009055;electron carrier activity;2.30610505835696e-08!GO:0009892;negative regulation of metabolic process;2.5163108230381e-08!GO:0008639;small protein conjugating enzyme activity;2.64632304189811e-08!GO:0017038;protein import;3.87286148497444e-08!GO:0004842;ubiquitin-protein ligase activity;4.83016548833553e-08!GO:0005635;nuclear envelope;5.22478775761435e-08!GO:0019787;small conjugating protein ligase activity;7.85883235704413e-08!GO:0031252;leading edge;8.49074260386727e-08!GO:0019222;regulation of metabolic process;1.14508600045873e-07!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.50355779650133e-07!GO:0017076;purine nucleotide binding;1.56744564574263e-07!GO:0032553;ribonucleotide binding;1.94274404014198e-07!GO:0032555;purine ribonucleotide binding;1.94274404014198e-07!GO:0005768;endosome;2.74221266787203e-07!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.78250781095669e-07!GO:0003713;transcription coactivator activity;2.78453540872442e-07!GO:0005761;mitochondrial ribosome;2.99049078169494e-07!GO:0000313;organellar ribosome;2.99049078169494e-07!GO:0051246;regulation of protein metabolic process;3.3150246768026e-07!GO:0007264;small GTPase mediated signal transduction;3.92618707738382e-07!GO:0031965;nuclear membrane;4.47215610553161e-07!GO:0003924;GTPase activity;4.50175451953259e-07!GO:0008361;regulation of cell size;4.65700937340409e-07!GO:0016563;transcription activator activity;4.65700937340409e-07!GO:0003779;actin binding;4.65700937340409e-07!GO:0016049;cell growth;5.59312464619128e-07!GO:0019899;enzyme binding;5.75420472179474e-07!GO:0006357;regulation of transcription from RNA polymerase II promoter;8.6714310850221e-07!GO:0009060;aerobic respiration;1.07577988521809e-06!GO:0006606;protein import into nucleus;1.3861949285614e-06!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.56847877774844e-06!GO:0051170;nuclear import;1.58105912233042e-06!GO:0048522;positive regulation of cellular process;1.64756905689719e-06!GO:0006888;ER to Golgi vesicle-mediated transport;1.69573782317163e-06!GO:0006793;phosphorus metabolic process;1.74753597056146e-06!GO:0006796;phosphate metabolic process;1.74753597056146e-06!GO:0005789;endoplasmic reticulum membrane;1.77550401824688e-06!GO:0005773;vacuole;1.81991600522345e-06!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.92020957862029e-06!GO:0045333;cellular respiration;2.04813281461098e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.27443332840341e-06!GO:0005525;GTP binding;2.30276777755236e-06!GO:0016881;acid-amino acid ligase activity;2.37918583652636e-06!GO:0006259;DNA metabolic process;2.61379948490995e-06!GO:0045892;negative regulation of transcription, DNA-dependent;2.83730877297967e-06!GO:0042981;regulation of apoptosis;2.94778419701996e-06!GO:0007243;protein kinase cascade;3.58654588653475e-06!GO:0043067;regulation of programmed cell death;3.81735620235508e-06!GO:0051186;cofactor metabolic process;3.9710667877082e-06!GO:0048475;coated membrane;4.2640703916452e-06!GO:0030117;membrane coat;4.2640703916452e-06!GO:0016044;membrane organization and biogenesis;4.83171260328502e-06!GO:0019829;cation-transporting ATPase activity;5.32533143393394e-06!GO:0043069;negative regulation of programmed cell death;5.80207545779374e-06!GO:0000323;lytic vacuole;8.61489497766438e-06!GO:0005764;lysosome;8.61489497766438e-06!GO:0005788;endoplasmic reticulum lumen;8.61489497766438e-06!GO:0030120;vesicle coat;8.61489497766438e-06!GO:0030662;coated vesicle membrane;8.61489497766438e-06!GO:0001558;regulation of cell growth;9.31974428726909e-06!GO:0043066;negative regulation of apoptosis;9.35333213216405e-06!GO:0048518;positive regulation of biological process;9.9380945204618e-06!GO:0042802;identical protein binding;1.08179518662122e-05!GO:0006916;anti-apoptosis;1.08427471060246e-05!GO:0006099;tricarboxylic acid cycle;1.08835023723625e-05!GO:0046356;acetyl-CoA catabolic process;1.08835023723625e-05!GO:0015986;ATP synthesis coupled proton transport;1.12408290832955e-05!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.12408290832955e-05!GO:0016310;phosphorylation;1.16210384444533e-05!GO:0051789;response to protein stimulus;1.3971309707175e-05!GO:0006986;response to unfolded protein;1.3971309707175e-05!GO:0045786;negative regulation of progression through cell cycle;1.43490382860361e-05!GO:0044431;Golgi apparatus part;1.43490382860361e-05!GO:0032561;guanyl ribonucleotide binding;1.63382589012645e-05!GO:0019001;guanyl nucleotide binding;1.63382589012645e-05!GO:0006325;establishment and/or maintenance of chromatin architecture;1.67649750482433e-05!GO:0030133;transport vesicle;2.6659150168039e-05!GO:0016568;chromatin modification;3.09521620000491e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;3.50960496732076e-05!GO:0044440;endosomal part;3.50960496732076e-05!GO:0010008;endosome membrane;3.50960496732076e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;4.27223763221843e-05!GO:0031323;regulation of cellular metabolic process;4.35553143247392e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;4.41190285354286e-05!GO:0016469;proton-transporting two-sector ATPase complex;4.6038984070244e-05!GO:0006323;DNA packaging;5.07060494796441e-05!GO:0005770;late endosome;5.13273616491482e-05!GO:0005798;Golgi-associated vesicle;5.37668570114384e-05!GO:0006084;acetyl-CoA metabolic process;5.48058911480081e-05!GO:0007010;cytoskeleton organization and biogenesis;5.74136129792285e-05!GO:0009109;coenzyme catabolic process;5.80591201721522e-05!GO:0006613;cotranslational protein targeting to membrane;6.17279609379282e-05!GO:0009056;catabolic process;6.30514319035708e-05!GO:0000245;spliceosome assembly;6.36358026058938e-05!GO:0006732;coenzyme metabolic process;6.90292408112409e-05!GO:0045893;positive regulation of transcription, DNA-dependent;7.15353522539435e-05!GO:0005839;proteasome core complex (sensu Eukaryota);7.22075587689338e-05!GO:0015078;hydrogen ion transmembrane transporter activity;7.33327383561281e-05!GO:0032446;protein modification by small protein conjugation;7.39278805367097e-05!GO:0044453;nuclear membrane part;7.4253600366951e-05!GO:0006693;prostaglandin metabolic process;8.53561244844903e-05!GO:0006692;prostanoid metabolic process;8.53561244844903e-05!GO:0043566;structure-specific DNA binding;8.76764241036404e-05!GO:0048471;perinuclear region of cytoplasm;8.84140396336471e-05!GO:0016567;protein ubiquitination;0.000110413153384263!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000124093480312284!GO:0000151;ubiquitin ligase complex;0.000130736672643755!GO:0009141;nucleoside triphosphate metabolic process;0.000142540085626583!GO:0051128;regulation of cellular component organization and biogenesis;0.000145779983239816!GO:0045941;positive regulation of transcription;0.000149977309705884!GO:0006950;response to stress;0.000153774953490094!GO:0051187;cofactor catabolic process;0.000157044447565378!GO:0045259;proton-transporting ATP synthase complex;0.000158678686561976!GO:0006350;transcription;0.000158889298128582!GO:0010468;regulation of gene expression;0.000164905165215696!GO:0009150;purine ribonucleotide metabolic process;0.00017290664293922!GO:0009199;ribonucleoside triphosphate metabolic process;0.000186637646960148!GO:0008026;ATP-dependent helicase activity;0.000186761363537789!GO:0005791;rough endoplasmic reticulum;0.000191374033808733!GO:0009205;purine ribonucleoside triphosphate metabolic process;0.000195620993139498!GO:0009144;purine nucleoside triphosphate metabolic process;0.000195620993139498!GO:0050657;nucleic acid transport;0.000215056582509139!GO:0051236;establishment of RNA localization;0.000215056582509139!GO:0050658;RNA transport;0.000215056582509139!GO:0009142;nucleoside triphosphate biosynthetic process;0.000216160901223913!GO:0009201;ribonucleoside triphosphate biosynthetic process;0.000216160901223913!GO:0006754;ATP biosynthetic process;0.000218775309441178!GO:0006753;nucleoside phosphate metabolic process;0.000218775309441178!GO:0015980;energy derivation by oxidation of organic compounds;0.000219718822235019!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;0.000222691187040014!GO:0009145;purine nucleoside triphosphate biosynthetic process;0.000222691187040014!GO:0033673;negative regulation of kinase activity;0.000232419858524978!GO:0006469;negative regulation of protein kinase activity;0.000232419858524978!GO:0046034;ATP metabolic process;0.000236013617526079!GO:0040008;regulation of growth;0.000242554394747229!GO:0006403;RNA localization;0.00024758048677651!GO:0051427;hormone receptor binding;0.000250702600537767!GO:0030554;adenyl nucleotide binding;0.000250897527057029!GO:0030027;lamellipodium;0.00026987759767193!GO:0009259;ribonucleotide metabolic process;0.000273290469625818!GO:0006163;purine nucleotide metabolic process;0.000273290469625818!GO:0032559;adenyl ribonucleotide binding;0.000277229387696786!GO:0005524;ATP binding;0.000296322124264833!GO:0007265;Ras protein signal transduction;0.000322132843389719!GO:0004386;helicase activity;0.000326092227036909!GO:0016887;ATPase activity;0.000328755668467722!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00036311702102009!GO:0003702;RNA polymerase II transcription factor activity;0.00036828263302632!GO:0009152;purine ribonucleotide biosynthetic process;0.000373245262424914!GO:0042254;ribosome biogenesis and assembly;0.000376937087301281!GO:0030532;small nuclear ribonucleoprotein complex;0.000379746124393518!GO:0005643;nuclear pore;0.000396791310428284!GO:0004298;threonine endopeptidase activity;0.000399189599716493!GO:0007242;intracellular signaling cascade;0.000417192046280258!GO:0030867;rough endoplasmic reticulum membrane;0.000431843349920831!GO:0042623;ATPase activity, coupled;0.000438011555459877!GO:0016197;endosome transport;0.000449877815525749!GO:0035257;nuclear hormone receptor binding;0.000476582720425343!GO:0016491;oxidoreductase activity;0.000496772502671275!GO:0019843;rRNA binding;0.000513103710606753!GO:0048468;cell development;0.000546532037010361!GO:0005667;transcription factor complex;0.000560611795501306!GO:0009966;regulation of signal transduction;0.000590546489877746!GO:0006897;endocytosis;0.000615008706150118!GO:0010324;membrane invagination;0.000615008706150118!GO:0006164;purine nucleotide biosynthetic process;0.000620847311927027!GO:0005769;early endosome;0.000628842479024643!GO:0003724;RNA helicase activity;0.000633357280151868!GO:0009260;ribonucleotide biosynthetic process;0.000698010552069726!GO:0051348;negative regulation of transferase activity;0.00072401665238979!GO:0003697;single-stranded DNA binding;0.000730716583119703!GO:0001726;ruffle;0.000732710943955883!GO:0008286;insulin receptor signaling pathway;0.000784724235104684!GO:0008154;actin polymerization and/or depolymerization;0.000808863032504038!GO:0001666;response to hypoxia;0.000862019211398174!GO:0000139;Golgi membrane;0.000862019211398174!GO:0005083;small GTPase regulator activity;0.000940766657114946!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00104640174768157!GO:0005912;adherens junction;0.00112757281619928!GO:0008250;oligosaccharyl transferase complex;0.00120059485427068!GO:0006402;mRNA catabolic process;0.00123361797520997!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00125468683832495!GO:0015629;actin cytoskeleton;0.00134949452315651!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00134972730344543!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.0013691503314255!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00141641399967814!GO:0043021;ribonucleoprotein binding;0.00143905985607808!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.00149829026037371!GO:0004812;aminoacyl-tRNA ligase activity;0.00149829026037371!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.00149829026037371!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00152070140745588!GO:0032774;RNA biosynthetic process;0.0015364191277801!GO:0065002;intracellular protein transport across a membrane;0.0015364191277801!GO:0006351;transcription, DNA-dependent;0.00155191555789949!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00161121768987464!GO:0033116;ER-Golgi intermediate compartment membrane;0.00168364370508772!GO:0007179;transforming growth factor beta receptor signaling pathway;0.00170897973964398!GO:0006612;protein targeting to membrane;0.00171886796866539!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0017694327418291!GO:0030041;actin filament polymerization;0.0017694327418291!GO:0045045;secretory pathway;0.00182280191153068!GO:0006979;response to oxidative stress;0.00182808223487508!GO:0006091;generation of precursor metabolites and energy;0.00184711244957562!GO:0006892;post-Golgi vesicle-mediated transport;0.0018981852455938!GO:0051287;NAD binding;0.00192373611229382!GO:0005741;mitochondrial outer membrane;0.0019328288228206!GO:0051726;regulation of cell cycle;0.00195167447243694!GO:0000074;regulation of progression through cell cycle;0.00195167447243694!GO:0043623;cellular protein complex assembly;0.00212054613320714!GO:0007049;cell cycle;0.00216175928306142!GO:0065009;regulation of a molecular function;0.00246493272948591!GO:0005905;coated pit;0.00248593161033339!GO:0035258;steroid hormone receptor binding;0.00257539608631614!GO:0008654;phospholipid biosynthetic process;0.00257723533758842!GO:0006891;intra-Golgi vesicle-mediated transport;0.00258713163044134!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00258713163044134!GO:0051276;chromosome organization and biogenesis;0.00264803796423166!GO:0007167;enzyme linked receptor protein signaling pathway;0.00268061583132079!GO:0045449;regulation of transcription;0.00268149074740794!GO:0051028;mRNA transport;0.00279284338096936!GO:0001516;prostaglandin biosynthetic process;0.00279284338096936!GO:0046457;prostanoid biosynthetic process;0.00279284338096936!GO:0003690;double-stranded DNA binding;0.00294189419909529!GO:0043038;amino acid activation;0.00295383476627734!GO:0006418;tRNA aminoacylation for protein translation;0.00295383476627734!GO:0043039;tRNA aminoacylation;0.00295383476627734!GO:0005885;Arp2/3 protein complex;0.00301716427769714!GO:0051920;peroxiredoxin activity;0.00304287577603762!GO:0016859;cis-trans isomerase activity;0.00310896154290598!GO:0019867;outer membrane;0.00312972651870693!GO:0031968;organelle outer membrane;0.00322563969209458!GO:0004576;oligosaccharyl transferase activity;0.0032363493753529!GO:0032940;secretion by cell;0.0036003928090215!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0036003928090215!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0036003928090215!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0036003928090215!GO:0008287;protein serine/threonine phosphatase complex;0.00363069016704723!GO:0006333;chromatin assembly or disassembly;0.00396558832655735!GO:0046930;pore complex;0.00396558832655735!GO:0030118;clathrin coat;0.00409017461807563!GO:0030518;steroid hormone receptor signaling pathway;0.00411069957316373!GO:0045792;negative regulation of cell size;0.00434448452228648!GO:0051087;chaperone binding;0.00442843429127301!GO:0043488;regulation of mRNA stability;0.00444422964946049!GO:0043487;regulation of RNA stability;0.00444422964946049!GO:0008186;RNA-dependent ATPase activity;0.00460501789823338!GO:0030308;negative regulation of cell growth;0.00536559835615711!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00547069807569482!GO:0001725;stress fiber;0.00562558727730161!GO:0032432;actin filament bundle;0.00562558727730161!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.00594362271133232!GO:0004667;prostaglandin-D synthase activity;0.00594362271133232!GO:0050802;circadian sleep/wake cycle, sleep;0.00594362271133232!GO:0022410;circadian sleep/wake cycle process;0.00594362271133232!GO:0042749;regulation of circadian sleep/wake cycle;0.00594362271133232!GO:0030100;regulation of endocytosis;0.00594362271133232!GO:0051168;nuclear export;0.00594992724237622!GO:0006607;NLS-bearing substrate import into nucleus;0.00603794310800253!GO:0030134;ER to Golgi transport vesicle;0.00603794310800253!GO:0019904;protein domain specific binding;0.00627331315672757!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00643417384812857!GO:0000902;cell morphogenesis;0.00645978735267748!GO:0032989;cellular structure morphogenesis;0.00645978735267748!GO:0005762;mitochondrial large ribosomal subunit;0.00689722258951498!GO:0000315;organellar large ribosomal subunit;0.00689722258951498!GO:0017166;vinculin binding;0.00689722258951498!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00713933011355342!GO:0008047;enzyme activator activity;0.00739997203187884!GO:0003729;mRNA binding;0.00759274403660651!GO:0046983;protein dimerization activity;0.00820006375901078!GO:0051188;cofactor biosynthetic process;0.00907989699448472!GO:0031072;heat shock protein binding;0.00910360118415523!GO:0030127;COPII vesicle coat;0.00910360118415523!GO:0012507;ER to Golgi transport vesicle membrane;0.00910360118415523!GO:0030695;GTPase regulator activity;0.00910360118415523!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00925564948259219!GO:0051270;regulation of cell motility;0.00962689546744367!GO:0048500;signal recognition particle;0.00963904618248216!GO:0006355;regulation of transcription, DNA-dependent;0.0097525439159135!GO:0012506;vesicle membrane;0.00977602730733589!GO:0016072;rRNA metabolic process;0.0098221112415418!GO:0016363;nuclear matrix;0.00991023026891133!GO:0030663;COPI coated vesicle membrane;0.0101472616605771!GO:0030126;COPI vesicle coat;0.0101472616605771!GO:0006364;rRNA processing;0.0105468825557136!GO:0051252;regulation of RNA metabolic process;0.0110385030456614!GO:0045454;cell redox homeostasis;0.0110668838178396!GO:0030659;cytoplasmic vesicle membrane;0.0114133545581857!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.0115547530001161!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0115547530001161!GO:0033043;regulation of organelle organization and biogenesis;0.0115547530001161!GO:0007005;mitochondrion organization and biogenesis;0.0115776373172763!GO:0018196;peptidyl-asparagine modification;0.0116322674741807!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0116322674741807!GO:0004004;ATP-dependent RNA helicase activity;0.0116752415949343!GO:0043407;negative regulation of MAP kinase activity;0.011748878075721!GO:0045926;negative regulation of growth;0.0120074779976532!GO:0006650;glycerophospholipid metabolic process;0.0120074779976532!GO:0006401;RNA catabolic process;0.0120074779976532!GO:0030658;transport vesicle membrane;0.0137154061702569!GO:0030241;muscle thick filament assembly;0.0138019344749317!GO:0031034;myosin filament assembly;0.0138019344749317!GO:0031033;myosin filament assembly or disassembly;0.0138019344749317!GO:0048739;cardiac muscle fiber development;0.0138019344749317!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.0140485877449!GO:0009719;response to endogenous stimulus;0.0142091626343858!GO:0030132;clathrin coat of coated pit;0.0143209611654992!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0143277659450466!GO:0043034;costamere;0.0147986318370372!GO:0009967;positive regulation of signal transduction;0.0148714369341718!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.0152270711101814!GO:0030521;androgen receptor signaling pathway;0.0156439907401993!GO:0031902;late endosome membrane;0.0165019592938041!GO:0005869;dynactin complex;0.0166000886842546!GO:0022890;inorganic cation transmembrane transporter activity;0.017906823820758!GO:0008283;cell proliferation;0.017981963297372!GO:0005100;Rho GTPase activator activity;0.0180353303483021!GO:0045098;type III intermediate filament;0.0182329344129257!GO:0043086;negative regulation of catalytic activity;0.0183095182330072!GO:0006974;response to DNA damage stimulus;0.0185548660995553!GO:0030137;COPI-coated vesicle;0.0185548660995553!GO:0031589;cell-substrate adhesion;0.0186762655039131!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0186762655039131!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0186775542223153!GO:0051674;localization of cell;0.0187402868176127!GO:0006928;cell motility;0.0187402868176127!GO:0016584;nucleosome positioning;0.0189476375010895!GO:0009893;positive regulation of metabolic process;0.0192438693229118!GO:0031349;positive regulation of defense response;0.019296453849616!GO:0050729;positive regulation of inflammatory response;0.019296453849616!GO:0006414;translational elongation;0.0193771023363235!GO:0044433;cytoplasmic vesicle part;0.0198410984152093!GO:0005048;signal sequence binding;0.0200739096964633!GO:0005813;centrosome;0.0200739096964633!GO:0004860;protein kinase inhibitor activity;0.0200739096964633!GO:0030119;AP-type membrane coat adaptor complex;0.0200739096964633!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0200739096964633!GO:0045047;protein targeting to ER;0.0200739096964633!GO:0007266;Rho protein signal transduction;0.0205598377197789!GO:0005096;GTPase activator activity;0.0207184770821029!GO:0007169;transmembrane receptor protein tyrosine kinase signaling pathway;0.0207364895027967!GO:0006376;mRNA splice site selection;0.0217961661696671!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0217961661696671!GO:0006752;group transfer coenzyme metabolic process;0.0220441967778773!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0228270145544411!GO:0040011;locomotion;0.0229650469557705!GO:0051101;regulation of DNA binding;0.0234380594993079!GO:0040012;regulation of locomotion;0.0237833898128807!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0240899029456085!GO:0035035;histone acetyltransferase binding;0.0242599662682763!GO:0005159;insulin-like growth factor receptor binding;0.0244568860122906!GO:0007160;cell-matrix adhesion;0.0247078558305813!GO:0009108;coenzyme biosynthetic process;0.0248772821870651!GO:0030522;intracellular receptor-mediated signaling pathway;0.0250490793309847!GO:0031901;early endosome membrane;0.0252315491342577!GO:0065004;protein-DNA complex assembly;0.0253294172596612!GO:0030131;clathrin adaptor complex;0.025382483572092!GO:0043681;protein import into mitochondrion;0.0254772428935002!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0254772428935002!GO:0008064;regulation of actin polymerization and/or depolymerization;0.025710306596544!GO:0016853;isomerase activity;0.025710306596544!GO:0050811;GABA receptor binding;0.0257374448536528!GO:0008139;nuclear localization sequence binding;0.0265546441661789!GO:0005774;vacuolar membrane;0.0271752053118893!GO:0043065;positive regulation of apoptosis;0.0272491809383023!GO:0005099;Ras GTPase activator activity;0.0272813960455193!GO:0044420;extracellular matrix part;0.0279441284643133!GO:0004364;glutathione transferase activity;0.0283521267838213!GO:0046474;glycerophospholipid biosynthetic process;0.0283580282352271!GO:0031625;ubiquitin protein ligase binding;0.0283580282352271!GO:0006509;membrane protein ectodomain proteolysis;0.0288953427485342!GO:0033619;membrane protein proteolysis;0.0288953427485342!GO:0008097;5S rRNA binding;0.0293746207350166!GO:0048487;beta-tubulin binding;0.0308906209327253!GO:0050662;coenzyme binding;0.0312748174558522!GO:0008312;7S RNA binding;0.0312748174558522!GO:0007050;cell cycle arrest;0.0320918191454529!GO:0005938;cell cortex;0.0325478360705951!GO:0000314;organellar small ribosomal subunit;0.0329480063417732!GO:0005763;mitochondrial small ribosomal subunit;0.0329480063417732!GO:0004177;aminopeptidase activity;0.0336227206033989!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.03417674799921!GO:0006611;protein export from nucleus;0.0342483798651176!GO:0051271;negative regulation of cell motility;0.0343750770124025!GO:0005862;muscle thin filament tropomyosin;0.0343874306201136!GO:0030660;Golgi-associated vesicle membrane;0.0349199109636213!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0353810290222247!GO:0043068;positive regulation of programmed cell death;0.0358641554522894!GO:0008147;structural constituent of bone;0.036348826278649!GO:0030832;regulation of actin filament length;0.036348826278649!GO:0001944;vasculature development;0.0367236375324007!GO:0031529;ruffle organization and biogenesis;0.0369224992555569!GO:0014706;striated muscle development;0.0369744333646994!GO:0060090;molecular adaptor activity;0.0375820117900777!GO:0003746;translation elongation factor activity;0.0376701490685697!GO:0007517;muscle development;0.0381975123677902!GO:0000059;protein import into nucleus, docking;0.0383922999630645!GO:0007178;transmembrane receptor protein serine/threonine kinase signaling pathway;0.0383922999630645!GO:0008601;protein phosphatase type 2A regulator activity;0.0384899593074151!GO:0051098;regulation of binding;0.0384899593074151!GO:0015631;tubulin binding;0.038625850943398!GO:0001568;blood vessel development;0.0390444818188167!GO:0051049;regulation of transport;0.0390444818188167!GO:0051235;maintenance of localization;0.0400616848490698!GO:0030384;phosphoinositide metabolic process;0.0400616848490698!GO:0030833;regulation of actin filament polymerization;0.0402820067610844!GO:0032535;regulation of cellular component size;0.0404681710591726!GO:0006984;ER-nuclear signaling pathway;0.0404681710591726!GO:0004722;protein serine/threonine phosphatase activity;0.0404681710591726!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0404681710591726!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0411725475391488!GO:0043022;ribosome binding;0.0427473093813649!GO:0045661;regulation of myoblast differentiation;0.0427483322351358!GO:0006595;polyamine metabolic process;0.042895591744435!GO:0001837;epithelial to mesenchymal transition;0.0433966386812926!GO:0006399;tRNA metabolic process;0.0433966386812926!GO:0005815;microtubule organizing center;0.0458775654290222!GO:0005581;collagen;0.0487040226856266!GO:0017091;AU-rich element binding;0.0493167598825431!GO:0050779;RNA destabilization;0.0493167598825431!GO:0000289;poly(A) tail shortening;0.0493167598825431!GO:0005832;chaperonin-containing T-complex;0.0499262286012116!GO:0004721;phosphoprotein phosphatase activity;0.0499915323851313 | |||
|sample_id=10022 | |sample_id=10022 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 101: | ||
|sample_tissue=prostate | |sample_tissue=prostate | ||
|top_motifs=SRF:2.66802118993;TFAP2{A,C}:2.31104155357;MAZ:2.29114067608;SP1:2.15807141723;FOX{D1,D2}:2.0662299983;TBP:2.02956867083;PATZ1:2.00613335411;NFATC1..3:1.84958683939;FOXO1,3,4:1.84493314939;MYBL2:1.75531464158;PRDM1:1.71974968328;GTF2I:1.70384050581;FOX{I1,J2}:1.69705381792;TFCP2:1.68945036707;TLX1..3_NFIC{dimer}:1.65359880794;HIC1:1.64964428752;TFAP4:1.60330009795;MED-1{core}:1.55666998113;MZF1:1.55171628568;EP300:1.55128593545;TFAP2B:1.47583338242;MTF1:1.44503343976;PAX5:1.44487402132;SPZ1:1.43455780986;ZNF238:1.42070496903;XCPE1{core}:1.3877942046;HBP1_HMGB_SSRP1_UBTF:1.29656056908;GFI1B:1.26285147242;STAT1,3:1.25869101305;MYFfamily:1.25823090022;MTE{core}:1.23864587361;MEF2{A,B,C,D}:1.22148639942;AR:1.21176957719;HOX{A6,A7,B6,B7}:1.16090623708;SOX5:1.14637075962;GTF2A1,2:1.14474040662;IKZF1:1.09817204825;RREB1:1.08779849983;EGR1..3:1.08584312871;HMX1:1.06225346808;GATA4:1.05005599976;HSF1,2:1.04244403118;FOXA2:1.03982260113;RBPJ:1.02954332284;SNAI1..3:1.00557651548;CDC5L:1.00151166226;NHLH1,2:0.994356347645;FOXQ1:0.975280774544;T:0.965101922428;IRF7:0.954527338176;POU6F1:0.941070595058;ATF6:0.939364538734;SMAD1..7,9:0.938428182641;NKX3-2:0.931451920847;ZEB1:0.892250834971;HAND1,2:0.888006884554;NR3C1:0.866491340864;TEAD1:0.854086985239;TGIF1:0.803700264538;ZNF148:0.736098886312;BREu{core}:0.727958077053;ZNF423:0.715762992399;TEF:0.700457531174;STAT2,4,6:0.693801192709;PBX1:0.686556434863;TBX4,5:0.679887365742;GZF1:0.625766177973;KLF4:0.611722621826;GATA6:0.592704186209;TLX2:0.591694379734;NANOG:0.568978986597;ATF2:0.560156414949;GCM1,2:0.559419085669;NR1H4:0.55032536534;XBP1:0.536003434175;POU5F1:0.533172851518;HNF1A:0.524694906333;IRF1,2:0.511013570755;TP53:0.508506072776;EBF1:0.49633429299;FOXN1:0.474076088848;ZIC1..3:0.471538315372;ZFP161:0.457685813773;SOX2:0.44011525988;MAFB:0.414989000713;ETS1,2:0.346176732463;ESR1:0.339623637588;FOX{F1,F2,J1}:0.329663994163;IKZF2:0.329380290394;FOXM1:0.316445688794;PAX1,9:0.310316456096;RFX2..5_RFXANK_RFXAP:0.304656754273;LMO2:0.292298484807;REST:0.278149720243;ATF4:0.269434521105;POU2F1..3:0.267313751608;PAX6:0.259030715774;POU3F1..4:0.248716447545;JUN:0.238986612304;VSX1,2:0.228813665138;SPIB:0.195997076573;ESRRA:0.184329946404;SREBF1,2:0.145341808973;NFIX:0.090745587588;FOXL1:0.0841049358483;MYOD1:0.0663322822202;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0628717949544;HNF4A_NR2F1,2:0.0502945371278;ZNF143:0.0216761850449;NR5A1,2:0.018420329304;SOX17:0.00615328659025;ARID5B:-0.00360311229616;SPI1:-0.0355826644488;GFI1:-0.0423317281945;ADNP_IRX_SIX_ZHX:-0.0456016671581;DBP:-0.0509677369797;GLI1..3:-0.10161302045;CRX:-0.107131487087;BPTF:-0.121577523458;FOXP3:-0.128055407751;PDX1:-0.129422736949;RFX1:-0.143390180006;NFIL3:-0.145360947862;AHR_ARNT_ARNT2:-0.146058643627;ALX1:-0.154183800069;SOX{8,9,10}:-0.177436924751;NKX2-1,4:-0.181232588439;ELF1,2,4:-0.18885117662;HMGA1,2:-0.194716519293;ZNF384:-0.199483818705;NKX6-1,2:-0.209850438443;ZBTB6:-0.235921186731;CUX2:-0.2441378693;NKX2-3_NKX2-5:-0.254479021974;PRRX1,2:-0.256245037861;NRF1:-0.28041697144;HES1:-0.284748121027;FOSL2:-0.29504414146;RXR{A,B,G}:-0.334955065808;NFKB1_REL_RELA:-0.350542761492;FOXP1:-0.355673253193;CDX1,2,4:-0.379485381735;HLF:-0.388430217341;LEF1_TCF7_TCF7L1,2:-0.392548566609;NFY{A,B,C}:-0.393557705485;ATF5_CREB3:-0.404469035134;UFEwm:-0.408668976893;CEBPA,B_DDIT3:-0.412075640339;RUNX1..3:-0.429608360803;PAX3,7:-0.431912332866;TFDP1:-0.438814791638;RORA:-0.439900370505;HOX{A4,D4}:-0.477604073953;DMAP1_NCOR{1,2}_SMARC:-0.506506606208;NFE2:-0.5093517994;LHX3,4:-0.534304600581;NR6A1:-0.541696117793;bHLH_family:-0.544178856598;HOXA9_MEIS1:-0.547596096718;TAL1_TCF{3,4,12}:-0.55931640211;FOXD3:-0.57032905901;PITX1..3:-0.589038919965;NFE2L2:-0.611011735074;FOS_FOS{B,L1}_JUN{B,D}:-0.639986647371;NKX2-2,8:-0.645153144765;ALX4:-0.647429102843;BACH2:-0.694687744096;RXRA_VDR{dimer}:-0.701502791258;HIF1A:-0.708638239773;HOX{A5,B5}:-0.721780418624;CREB1:-0.738486641135;E2F1..5:-0.7958187719;AIRE:-0.802104935377;TOPORS:-0.802121440136;PAX2:-0.890365162291;NANOG{mouse}:-0.900056830485;NFE2L1:-0.905164805168;ELK1,4_GABP{A,B1}:-1.03505454101;YY1:-1.05890682171;EVI1:-1.0862686888;OCT4_SOX2{dimer}:-1.12299912607;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.20773223352;EN1,2:-1.22151825629;POU1F1:-1.23255020505;ONECUT1,2:-1.23383153887;NKX3-1:-1.26358796605;ZBTB16:-1.2852948951;MYB:-1.40548648622;PPARG:-1.48970499538;STAT5{A,B}:-1.7440868744;PAX8:-2.22516411315;PAX4:-2.32795792776 | |top_motifs=SRF:2.66802118993;TFAP2{A,C}:2.31104155357;MAZ:2.29114067608;SP1:2.15807141723;FOX{D1,D2}:2.0662299983;TBP:2.02956867083;PATZ1:2.00613335411;NFATC1..3:1.84958683939;FOXO1,3,4:1.84493314939;MYBL2:1.75531464158;PRDM1:1.71974968328;GTF2I:1.70384050581;FOX{I1,J2}:1.69705381792;TFCP2:1.68945036707;TLX1..3_NFIC{dimer}:1.65359880794;HIC1:1.64964428752;TFAP4:1.60330009795;MED-1{core}:1.55666998113;MZF1:1.55171628568;EP300:1.55128593545;TFAP2B:1.47583338242;MTF1:1.44503343976;PAX5:1.44487402132;SPZ1:1.43455780986;ZNF238:1.42070496903;XCPE1{core}:1.3877942046;HBP1_HMGB_SSRP1_UBTF:1.29656056908;GFI1B:1.26285147242;STAT1,3:1.25869101305;MYFfamily:1.25823090022;MTE{core}:1.23864587361;MEF2{A,B,C,D}:1.22148639942;AR:1.21176957719;HOX{A6,A7,B6,B7}:1.16090623708;SOX5:1.14637075962;GTF2A1,2:1.14474040662;IKZF1:1.09817204825;RREB1:1.08779849983;EGR1..3:1.08584312871;HMX1:1.06225346808;GATA4:1.05005599976;HSF1,2:1.04244403118;FOXA2:1.03982260113;RBPJ:1.02954332284;SNAI1..3:1.00557651548;CDC5L:1.00151166226;NHLH1,2:0.994356347645;FOXQ1:0.975280774544;T:0.965101922428;IRF7:0.954527338176;POU6F1:0.941070595058;ATF6:0.939364538734;SMAD1..7,9:0.938428182641;NKX3-2:0.931451920847;ZEB1:0.892250834971;HAND1,2:0.888006884554;NR3C1:0.866491340864;TEAD1:0.854086985239;TGIF1:0.803700264538;ZNF148:0.736098886312;BREu{core}:0.727958077053;ZNF423:0.715762992399;TEF:0.700457531174;STAT2,4,6:0.693801192709;PBX1:0.686556434863;TBX4,5:0.679887365742;GZF1:0.625766177973;KLF4:0.611722621826;GATA6:0.592704186209;TLX2:0.591694379734;NANOG:0.568978986597;ATF2:0.560156414949;GCM1,2:0.559419085669;NR1H4:0.55032536534;XBP1:0.536003434175;POU5F1:0.533172851518;HNF1A:0.524694906333;IRF1,2:0.511013570755;TP53:0.508506072776;EBF1:0.49633429299;FOXN1:0.474076088848;ZIC1..3:0.471538315372;ZFP161:0.457685813773;SOX2:0.44011525988;MAFB:0.414989000713;ETS1,2:0.346176732463;ESR1:0.339623637588;FOX{F1,F2,J1}:0.329663994163;IKZF2:0.329380290394;FOXM1:0.316445688794;PAX1,9:0.310316456096;RFX2..5_RFXANK_RFXAP:0.304656754273;LMO2:0.292298484807;REST:0.278149720243;ATF4:0.269434521105;POU2F1..3:0.267313751608;PAX6:0.259030715774;POU3F1..4:0.248716447545;JUN:0.238986612304;VSX1,2:0.228813665138;SPIB:0.195997076573;ESRRA:0.184329946404;SREBF1,2:0.145341808973;NFIX:0.090745587588;FOXL1:0.0841049358483;MYOD1:0.0663322822202;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0628717949544;HNF4A_NR2F1,2:0.0502945371278;ZNF143:0.0216761850449;NR5A1,2:0.018420329304;SOX17:0.00615328659025;ARID5B:-0.00360311229616;SPI1:-0.0355826644488;GFI1:-0.0423317281945;ADNP_IRX_SIX_ZHX:-0.0456016671581;DBP:-0.0509677369797;GLI1..3:-0.10161302045;CRX:-0.107131487087;BPTF:-0.121577523458;FOXP3:-0.128055407751;PDX1:-0.129422736949;RFX1:-0.143390180006;NFIL3:-0.145360947862;AHR_ARNT_ARNT2:-0.146058643627;ALX1:-0.154183800069;SOX{8,9,10}:-0.177436924751;NKX2-1,4:-0.181232588439;ELF1,2,4:-0.18885117662;HMGA1,2:-0.194716519293;ZNF384:-0.199483818705;NKX6-1,2:-0.209850438443;ZBTB6:-0.235921186731;CUX2:-0.2441378693;NKX2-3_NKX2-5:-0.254479021974;PRRX1,2:-0.256245037861;NRF1:-0.28041697144;HES1:-0.284748121027;FOSL2:-0.29504414146;RXR{A,B,G}:-0.334955065808;NFKB1_REL_RELA:-0.350542761492;FOXP1:-0.355673253193;CDX1,2,4:-0.379485381735;HLF:-0.388430217341;LEF1_TCF7_TCF7L1,2:-0.392548566609;NFY{A,B,C}:-0.393557705485;ATF5_CREB3:-0.404469035134;UFEwm:-0.408668976893;CEBPA,B_DDIT3:-0.412075640339;RUNX1..3:-0.429608360803;PAX3,7:-0.431912332866;TFDP1:-0.438814791638;RORA:-0.439900370505;HOX{A4,D4}:-0.477604073953;DMAP1_NCOR{1,2}_SMARC:-0.506506606208;NFE2:-0.5093517994;LHX3,4:-0.534304600581;NR6A1:-0.541696117793;bHLH_family:-0.544178856598;HOXA9_MEIS1:-0.547596096718;TAL1_TCF{3,4,12}:-0.55931640211;FOXD3:-0.57032905901;PITX1..3:-0.589038919965;NFE2L2:-0.611011735074;FOS_FOS{B,L1}_JUN{B,D}:-0.639986647371;NKX2-2,8:-0.645153144765;ALX4:-0.647429102843;BACH2:-0.694687744096;RXRA_VDR{dimer}:-0.701502791258;HIF1A:-0.708638239773;HOX{A5,B5}:-0.721780418624;CREB1:-0.738486641135;E2F1..5:-0.7958187719;AIRE:-0.802104935377;TOPORS:-0.802121440136;PAX2:-0.890365162291;NANOG{mouse}:-0.900056830485;NFE2L1:-0.905164805168;ELK1,4_GABP{A,B1}:-1.03505454101;YY1:-1.05890682171;EVI1:-1.0862686888;OCT4_SOX2{dimer}:-1.12299912607;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.20773223352;EN1,2:-1.22151825629;POU1F1:-1.23255020505;ONECUT1,2:-1.23383153887;NKX3-1:-1.26358796605;ZBTB16:-1.2852948951;MYB:-1.40548648622;PPARG:-1.48970499538;STAT5{A,B}:-1.7440868744;PAX8:-2.22516411315;PAX4:-2.32795792776 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10022-101D4;search_select_hide=table117:FF:10022-101D4 | |||
}} | }} | ||
Latest revision as of 12:14, 3 June 2020
| Name: | prostate, adult, pool1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10628 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| HumanCAGEScan Download raw sequence, BAM & CTSS | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10628
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10628
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0122 |
| 10 | 10 | 0.0271 |
| 100 | 100 | 0.111 |
| 101 | 101 | 0.908 |
| 102 | 102 | 0.596 |
| 103 | 103 | 0.15 |
| 104 | 104 | 0.529 |
| 105 | 105 | 0.638 |
| 106 | 106 | 0.413 |
| 107 | 107 | 0.866 |
| 108 | 108 | 0.525 |
| 109 | 109 | 0.0206 |
| 11 | 11 | 0.035 |
| 110 | 110 | 0.0683 |
| 111 | 111 | 0.00237 |
| 112 | 112 | 0.681 |
| 113 | 113 | 0.461 |
| 114 | 114 | 0.00355 |
| 115 | 115 | 0.925 |
| 116 | 116 | 0.65 |
| 117 | 117 | 0.0139 |
| 118 | 118 | 0.0661 |
| 119 | 119 | 0.254 |
| 12 | 12 | 0.73 |
| 120 | 120 | 0.0442 |
| 121 | 121 | 0.489 |
| 122 | 122 | 0.72 |
| 123 | 123 | 0.0104 |
| 124 | 124 | 0.707 |
| 125 | 125 | 0.0791 |
| 126 | 126 | 0.789 |
| 127 | 127 | 0.572 |
| 128 | 128 | 0.932 |
| 129 | 129 | 0.443 |
| 13 | 13 | 0.062 |
| 130 | 130 | 0.375 |
| 131 | 131 | 0.161 |
| 132 | 132 | 0.235 |
| 133 | 133 | 0.135 |
| 134 | 134 | 0.121 |
| 135 | 135 | 0.239 |
| 136 | 136 | 0.401 |
| 137 | 137 | 0.34 |
| 138 | 138 | 0.611 |
| 139 | 139 | 0.0724 |
| 14 | 14 | 0.984 |
| 140 | 140 | 0.169 |
| 141 | 141 | 0.28 |
| 142 | 142 | 0.71 |
| 143 | 143 | 0.0175 |
| 144 | 144 | 0.999 |
| 145 | 145 | 0.405 |
| 146 | 146 | 0.881 |
| 147 | 147 | 0.641 |
| 148 | 148 | 0.0664 |
| 149 | 149 | 0.874 |
| 15 | 15 | 0.0369 |
| 150 | 150 | 0.485 |
| 151 | 151 | 0.729 |
| 152 | 152 | 0.714 |
| 153 | 153 | 0.636 |
| 154 | 154 | 0.682 |
| 155 | 155 | 0.202 |
| 156 | 156 | 0.463 |
| 157 | 157 | 0.947 |
| 158 | 158 | 0.331 |
| 159 | 159 | 0.738 |
| 16 | 16 | 0.0945 |
| 160 | 160 | 0.649 |
| 161 | 161 | 0.287 |
| 162 | 162 | 0.615 |
| 163 | 163 | 0.929 |
| 164 | 164 | 0.0187 |
| 165 | 165 | 0.782 |
| 166 | 166 | 0.559 |
| 167 | 167 | 0.0225 |
| 168 | 168 | 0.555 |
| 169 | 169 | 0.221 |
| 17 | 17 | 0.395 |
| 18 | 18 | 0.0307 |
| 19 | 19 | 0.856 |
| 2 | 2 | 0.186 |
| 20 | 20 | 0.0809 |
| 21 | 21 | 0.139 |
| 22 | 22 | 0.93 |
| 23 | 23 | 0.873 |
| 24 | 24 | 0.584 |
| 25 | 25 | 0.329 |
| 26 | 26 | 0.0134 |
| 27 | 27 | 0.958 |
| 28 | 28 | 0.689 |
| 29 | 29 | 0.0101 |
| 3 | 3 | 0.148 |
| 30 | 30 | 0.0617 |
| 31 | 31 | 0.87 |
| 32 | 32 | 0.222 |
| 33 | 33 | 0.15 |
| 34 | 34 | 0.571 |
| 35 | 35 | 0.168 |
| 36 | 36 | 0.0131 |
| 37 | 37 | 0.126 |
| 38 | 38 | 0.566 |
| 39 | 39 | 0.434 |
| 4 | 4 | 0.36 |
| 40 | 40 | 0.0699 |
| 41 | 41 | 0.0464 |
| 42 | 42 | 0.333 |
| 43 | 43 | 0.128 |
| 44 | 44 | 0.276 |
| 45 | 45 | 0.352 |
| 46 | 46 | 0.0575 |
| 47 | 47 | 0.0573 |
| 48 | 48 | 0.153 |
| 49 | 49 | 0.0625 |
| 5 | 5 | 0.389 |
| 50 | 50 | 0.63 |
| 51 | 51 | 0.623 |
| 52 | 52 | 0.421 |
| 53 | 53 | 0.97 |
| 54 | 54 | 0.879 |
| 55 | 55 | 0.406 |
| 56 | 56 | 0.808 |
| 57 | 57 | 0.105 |
| 58 | 58 | 0.569 |
| 59 | 59 | 0.647 |
| 6 | 6 | 0.461 |
| 60 | 60 | 0.696 |
| 61 | 61 | 0.254 |
| 62 | 62 | 0.232 |
| 63 | 63 | 0.475 |
| 64 | 64 | 0.169 |
| 65 | 65 | 0.573 |
| 66 | 66 | 0.117 |
| 67 | 67 | 0.321 |
| 68 | 68 | 0.851 |
| 69 | 69 | 0.478 |
| 7 | 7 | 0.234 |
| 70 | 70 | 0.0489 |
| 71 | 71 | 0.0334 |
| 72 | 72 | 0.977 |
| 73 | 73 | 0.113 |
| 74 | 74 | 0.274 |
| 75 | 75 | 0.00685 |
| 76 | 76 | 0.043 |
| 77 | 77 | 0.738 |
| 78 | 78 | 0.114 |
| 79 | 79 | 0.25 |
| 8 | 8 | 0.0917 |
| 80 | 80 | 0.702 |
| 81 | 81 | 0.335 |
| 82 | 82 | 0.399 |
| 83 | 83 | 0.454 |
| 84 | 84 | 0.824 |
| 85 | 85 | 0.415 |
| 86 | 86 | 0.672 |
| 87 | 87 | 0.128 |
| 88 | 88 | 0.906 |
| 89 | 89 | 0.528 |
| 9 | 9 | 0.523 |
| 90 | 90 | 0.0206 |
| 91 | 91 | 0.703 |
| 92 | 92 | 0.642 |
| 93 | 93 | 0.0624 |
| 94 | 94 | 0.0269 |
| 95 | 95 | 0.0114 |
| 96 | 96 | 0.666 |
| 97 | 97 | 0.897 |
| 98 | 98 | 0.0997 |
| 99 | 99 | 0.468 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10628
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0010022 human prostate - adult sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0002367 (prostate gland)
0000479 (tissue)
0005156 (reproductive structure)
0004119 (endoderm-derived structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000077 (mixed endoderm/mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002530 (gland)
0010147 (male accessory sex gland)
0010317 (germ layer / neural crest derived structure)
0003937 (sex gland)
0005399 (male reproductive gland)
0003101 (male organism)
0000079 (male reproductive system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010022 (human prostate - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0006603 (presumptive mesoderm)
UBERON:0009847 (prostate field)
UBERON:0003353 (epithelium of hindgut)
UBERON:0010316 (germ layer / neural crest)
