FF:10045-101F9: Difference between revisions

Latest revision as of 12:17, 3 June 2020

Name:	kidney, fetal, pool1
Species:	Human (Homo sapiens)
Library ID:	CNhs10652
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	kidney
dev stage	12-31 weeks fetus
sex	mixed
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Clontech
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	8082007A
catalog number	Cat:636584
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005649

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10652		CAGE		DRX008671		DRR009543

Accession ID Hg19

Library id		BAM		CTSS
CNhs10652		DRZ000968		DRZ002353

Accession ID Hg38

Library id		BAM		CTSS
CNhs10652		DRZ012318		DRZ013703

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0.0222
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0653
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.169
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0.101
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0.0222
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0.0222
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.363
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.0234
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	1.204224e-4
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0.757
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.364
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.045
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.123
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.0433
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.0212
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0.00633
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0.0222
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.0635
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0358
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0.239
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0.0222
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0.0222
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.115
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.168
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.252
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0.0222
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.0304
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.141
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.0433
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.19
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.0222
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.00605
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0712
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0.0433
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.0222
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0.0827
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.0207
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.162
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.0222
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.136
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0.0222
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.0827
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.101
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.0222
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0.0222
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0.411
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.0635
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.0827
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0.0222
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10652

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00208
MA0003.1	MA0003.1	0.541
MA0004.1	MA0004.1	0.561
MA0006.1	MA0006.1	0.594
MA0007.1	MA0007.1	0.36
MA0009.1	MA0009.1	0.497
MA0014.1	MA0014.1	0.969
MA0017.1	MA0017.1	0.24
MA0018.2	MA0018.2	0.235
MA0019.1	MA0019.1	0.137
MA0024.1	MA0024.1	0.72
MA0025.1	MA0025.1	0.374
MA0027.1	MA0027.1	0.826
MA0028.1	MA0028.1	0.115
MA0029.1	MA0029.1	0.67
MA0030.1	MA0030.1	4.36491e-4
MA0031.1	MA0031.1	0.147
MA0035.2	MA0035.2	0.712
MA0038.1	MA0038.1	0.0046
MA0039.2	MA0039.2	0.252
MA0040.1	MA0040.1	0.177
MA0041.1	MA0041.1	0.142
MA0042.1	MA0042.1	0.346
MA0043.1	MA0043.1	0.546
MA0046.1	MA0046.1	1.17514e-69
MA0047.2	MA0047.2	0.465
MA0048.1	MA0048.1	0.261
MA0050.1	MA0050.1	0.396
MA0051.1	MA0051.1	0.9
MA0052.1	MA0052.1	0.0476
MA0055.1	MA0055.1	0.366
MA0057.1	MA0057.1	0.852
MA0058.1	MA0058.1	0.623
MA0059.1	MA0059.1	0.0186
MA0060.1	MA0060.1	0.00277
MA0061.1	MA0061.1	0.0128
MA0062.2	MA0062.2	0.0342
MA0065.2	MA0065.2	0.0704
MA0066.1	MA0066.1	0.0311
MA0067.1	MA0067.1	0.175
MA0068.1	MA0068.1	9.10801e-6
MA0069.1	MA0069.1	0.329
MA0070.1	MA0070.1	0.298
MA0071.1	MA0071.1	0.286
MA0072.1	MA0072.1	0.368
MA0073.1	MA0073.1	0.716
MA0074.1	MA0074.1	0.738
MA0076.1	MA0076.1	0.293
MA0077.1	MA0077.1	0.623
MA0078.1	MA0078.1	0.0964
MA0079.2	MA0079.2	0.0568
MA0080.2	MA0080.2	0.061
MA0081.1	MA0081.1	0.276
MA0083.1	MA0083.1	0.644
MA0084.1	MA0084.1	0.496
MA0087.1	MA0087.1	0.232
MA0088.1	MA0088.1	0.0747
MA0090.1	MA0090.1	0.0439
MA0091.1	MA0091.1	0.307
MA0092.1	MA0092.1	0.411
MA0093.1	MA0093.1	0.656
MA0099.2	MA0099.2	6.71236e-7
MA0100.1	MA0100.1	0.462
MA0101.1	MA0101.1	0.152
MA0102.2	MA0102.2	0.857
MA0103.1	MA0103.1	0.774
MA0104.2	MA0104.2	0.0303
MA0105.1	MA0105.1	1.65571e-8
MA0106.1	MA0106.1	0.077
MA0107.1	MA0107.1	0.234
MA0108.2	MA0108.2	1.58659e-17
MA0111.1	MA0111.1	0.266
MA0112.2	MA0112.2	0.00349
MA0113.1	MA0113.1	0.799
MA0114.1	MA0114.1	0.898
MA0115.1	MA0115.1	0.847
MA0116.1	MA0116.1	7.59471e-5
MA0117.1	MA0117.1	0.36
MA0119.1	MA0119.1	0.0785
MA0122.1	MA0122.1	0.457
MA0124.1	MA0124.1	0.568
MA0125.1	MA0125.1	0.0679
MA0131.1	MA0131.1	0.936
MA0135.1	MA0135.1	0.0135
MA0136.1	MA0136.1	0.0351
MA0137.2	MA0137.2	0.106
MA0138.2	MA0138.2	0.447
MA0139.1	MA0139.1	0.255
MA0140.1	MA0140.1	0.606
MA0141.1	MA0141.1	0.342
MA0142.1	MA0142.1	0.672
MA0143.1	MA0143.1	0.309
MA0144.1	MA0144.1	0.851
MA0145.1	MA0145.1	0.352
MA0146.1	MA0146.1	0.287
MA0147.1	MA0147.1	0.0109
MA0148.1	MA0148.1	0.691
MA0149.1	MA0149.1	0.0102
MA0150.1	MA0150.1	0.00201
MA0152.1	MA0152.1	0.418
MA0153.1	MA0153.1	1.19775e-41
MA0154.1	MA0154.1	0.00504
MA0155.1	MA0155.1	0.53
MA0156.1	MA0156.1	0.106
MA0157.1	MA0157.1	0.772
MA0159.1	MA0159.1	0.159
MA0160.1	MA0160.1	0.219
MA0162.1	MA0162.1	0.477
MA0163.1	MA0163.1	3.20602e-13
MA0164.1	MA0164.1	0.443
MA0258.1	MA0258.1	0.0164
MA0259.1	MA0259.1	0.24

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10652

Novel motif	Logo	P-value
1	1	0.0087
10	10	0.0129
100	100	0.321
101	101	0.446
102	102	0.682
103	103	0.0606
104	104	0.747
105	105	0.738
106	106	0.212
107	107	0.624
108	108	0.517
109	109	0.0164
11	11	0.035
110	110	0.0835
111	111	7.41935e-4
112	112	0.147
113	113	0.583
114	114	3.6964e-4
115	115	0.706
116	116	0.303
117	117	0.00817
118	118	0.154
119	119	0.101
12	12	0.791
120	120	0.162
121	121	0.924
122	122	0.487
123	123	0.00673
124	124	0.637
125	125	0.00375
126	126	0.875
127	127	0.111
128	128	0.249
129	129	0.901
13	13	0.135
130	130	0.146
131	131	0.722
132	132	0.743
133	133	0.899
134	134	0.77
135	135	0.89
136	136	0.945
137	137	0.269
138	138	0.241
139	139	0.0218
14	14	0.887
140	140	0.181
141	141	0.0922
142	142	0.451
143	143	0.00181
144	144	0.495
145	145	0.485
146	146	0.612
147	147	0.874
148	148	0.00887
149	149	0.468
15	15	0.0514
150	150	0.404
151	151	0.438
152	152	0.945
153	153	0.95
154	154	0.378
155	155	0.28
156	156	0.769
157	157	0.734
158	158	0.435
159	159	0.369
16	16	0.137
160	160	0.365
161	161	0.283
162	162	0.691
163	163	0.773
164	164	0.0454
165	165	0.45
166	166	0.842
167	167	0.0142
168	168	0.93
169	169	0.0536
17	17	0.23
18	18	0.0245
19	19	0.697
2	2	0.603
20	20	0.362
21	21	0.159
22	22	0.707
23	23	0.585
24	24	0.73
25	25	0.323
26	26	0.0172
27	27	0.725
28	28	0.768
29	29	0.0173
3	3	0.0501
30	30	0.112
31	31	0.874
32	32	0.122
33	33	0.318
34	34	0.463
35	35	0.0968
36	36	0.00828
37	37	0.0532
38	38	0.539
39	39	0.834
4	4	0.702
40	40	0.258
41	41	0.185
42	42	0.13
43	43	0.115
44	44	0.245
45	45	0.515
46	46	0.0262
47	47	0.0567
48	48	0.136
49	49	0.0676
5	5	0.21
50	50	0.835
51	51	0.543
52	52	0.618
53	53	0.577
54	54	0.684
55	55	0.149
56	56	0.73
57	57	0.182
58	58	0.453
59	59	0.457
6	6	0.348
60	60	0.424
61	61	0.273
62	62	0.132
63	63	0.255
64	64	0.147
65	65	0.454
66	66	0.753
67	67	0.21
68	68	0.431
69	69	0.57
7	7	0.435
70	70	0.00851
71	71	0.0146
72	72	0.581
73	73	0.093
74	74	0.202
75	75	0.00683
76	76	0.0417
77	77	0.859
78	78	0.243
79	79	0.0895
8	8	0.0451
80	80	0.578
81	81	0.117
82	82	0.188
83	83	0.583
84	84	0.563
85	85	0.208
86	86	0.21
87	87	0.185
88	88	0.941
89	89	0.223
9	9	0.944
90	90	0.042
91	91	0.409
92	92	0.246
93	93	0.156
94	94	0.0208
95	95	0.0767
96	96	0.12
97	97	0.742
98	98	0.0962
99	99	0.559

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10652

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010045 human kidney - fetal sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0002113 (kidney)
0002100 (trunk)
0000479 (tissue)
0000062 (organ)
0000475 (organism subdivision)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0009569 (subdivision of trunk)
0000489 (cavitated compound organ)
0005177 (trunk region element)
0005172 (abdomen element)
0005173 (abdominal segment element)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0000916 (abdomen)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000999 (fetal tissue sample)
0000004 (tissue sample)
0010045 (human kidney - fetal sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0003104 (mesenchyme)
UBERON:0003918 (kidney mesenchyme)
UBERON:0007687 (kidney field)

@@ Line 1: / Line 1: @@
 {{f5samples
 |DRA_sample_Accession=CAGE@SAMD00005649
-|accession_numbers=CAGE;DRX008671;DRR009543;DRZ000968;DRZ002353
+|accession_numbers=CAGE;DRX008671;DRR009543;DRZ000968;DRZ002353;DRZ012318;DRZ013703
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002113,UBERON:0002100,UBERON:0000479,UBERON:0000062,UBERON:0000475,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0009569,UBERON:0000489,UBERON:0005177,UBERON:0005172,UBERON:0005173,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0000916
 |ancestors_in_cell_lineage_facet=
@@ Line 13: / Line 13: @@
 |def=
 |expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!2.72!525.39!TCF21;;chr2:114036488..114036504,-!p1@PAX8!2.39!243.13!PAX8;;chr17:36105042..36105060,-!p1@HNF1B!2.11!127.05!HNF1B;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!2.04!107.69!POU3F3;;chr13:72441315..72441454,-!p1@DACH1!2.02!199.75!DACH1;;chr17:46682321..46682362,-!p1@HOXB6!2.02!102.92!HOXB6;;chr2:122042770..122042785,-!p1@TFCP2L1!1.99!97.04!TFCP2L1;;chr7:27192185..27192209,-!p1@HOXA3!1.92!81.99!HOXA3;;chr1:201979743..201979762,+!p1@ELF3!1.84!67.67!ELF3;;chr11:32457413..32457431,-!p2@WT1!1.82!65.10!WT1;;chr10:102505327..102505344,+!p1@PAX2!1.80!62.16!PAX2;;chr19:46800289..46800327,+!p2@HIF3A!1.79!60.95!HIF3A;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.79!60.53!HOXC5;;chr11:32457075..32457095,-!p1@WT1!1.78!59.06!WT1;;chr17:46667594..46667619,-!p1@HOXB3!1.77!57.33!HOXB3;;chr2:177001290..177001315,+!p1@HOXD3!1.75!55.44!HOXD3;;chr7:27205136..27205164,-!p1@HOXA9!1.68!46.74!HOXA9;;chr3:128212033..128212051,-!p1@GATA2!1.62!40.23!GATA2;;chr10:119302232..119302265,+!p1@EMX2!1.59!38.29!EMX2;;chr10:8096631..8096660,+!p1@GATA3!1.57!43.43!GATA3;;chr1:201979703..201979721,+!p2@ELF3!1.57!36.19!ELF3;;chr17:35294075..35294102,+!p1@ENST00000559335!1.56!35.62!LHX1;;chr20:62680984..62680999,-!p1@SOX18!1.53!43.07!SOX18;;chr19:46801639..46801699,+!p1@HIF3A!1.51!31.42!HIF3A;;chr19:12348371..12348386,-!p5@ZNF44!1.50!30.69!ZNF44;;chr21:39870339..39870443,-!p1@ERG!1.50!30.53!ERG;;chr3:169381420..169381535,-!p1@MECOM!1.48!34.20!MECOM;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.47!28.64!POU3F3;;chr1:40105299..40105326,-!p1@HEYL!1.47!28.54!HEYL;;chr13:72441074..72441172,-!p2@DACH1!1.46!27.91!DACH1;;chr7:27224842..27224872,-!p1@HOXA11!1.45!27.43!HOXA11;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.45!26.96!PEG3;;chrX:85403445..85403479,+!p2@DACH2!1.44!26.59!DACH2;;chr6:19837592..19837621,+!p1@ID4!1.43!151.59!ID4;;chr17:46703687..46703740,-!p1@HOXB9!1.42!25.39!HOXB9;;chr5:92918919..92918942,+!p1@NR2F1!1.40!105.49!NR2F1;;chr17:59477233..59477263,+!p1@TBX2!1.40!72.91!TBX2;;chr16:86600426..86600441,+!p1@FOXC2!1.40!57.75!FOXC2;;chr2:73144617..73144654,+!p1@EMX1!1.40!24.39!EMX1;;chr2:176973498..176973524,+!p1@HOXD10!1.40!24.23!HOXD10;;chr20:39317868..39317884,-!p1@MAFB!1.39!266.52!MAFB;;chr17:46692624..46692659,-!p3@HOXB8!1.37!22.19!HOXB8;;chr7:27213893..27213954,-!p1@HOXA10!1.36!22.03!HOXA10;;chr21:38071430..38071456,+!p1@SIM2!1.36!21.87!SIM2;;chr2:145277882..145277967,-!p3@ZEB2!1.35!36.19!ZEB2;;chr11:34642612..34642646,+!p1@EHF!1.35!21.56!EHF;;chr2:176981499..176981522,+!p2@HOXD10!1.34!20.72!HOXD10;;chr17:46622205..46622218,-!p3@HOXB2!1.33!23.71!HOXB2;;chrY:21906594..21906622,-!p1@KDM5D!1.33!20.30!KDM5D;;chr11:113930425..113930471,+!p1@ZBTB16!1.32!28.54!ZBTB16;;chr7:27224795..27224840,-!p2@HOXA11!1.32!20.09!HOXA11;;chr12:54393880..54393962,+!p1@HOXC9!1.32!20.04!HOXC9;;chr2:176994408..176994492,+!p1@HOXD8!1.32!19.72!HOXD8;;chr17:46622440..46622477,-!p5@HOXB2!1.30!21.03!HOXB2;;chr3:69915369..69915381,+!p4@MITF!1.29!18.67!MITF;;chr20:43029862..43029900,+!p1@HNF4A!1.29!18.57!HNF4A;;chr10:119302268..119302282,+!p4@EMX2!1.29!18.36!EMX2;;chr5:3595961..3595975,+!p3@IRX1!1.28!18.20!IRX1;;chr5:2751762..2751784,-!p1@IRX2!1.27!17.83!IRX2;;chr1:209979467..209979494,-!p1@IRF6!1.26!19.51!IRF6;;chr1:27240455..27240474,-!p1@NR0B2!1.26!17.36!NR0B2;;chr15:57511609..57511651,+!p2@TCF12!1.25!27.85!TCF12;;chr5:2751785..2751808,-!p2@IRX2!1.25!16.84!IRX2;;chr1:217311025..217311049,-!p10@ESRRG!1.24!16.52!ESRRG;;chr3:69915385..69915438,+!p3@MITF!1.24!16.42!MITF;;chr15:96873984..96873999,+!p3@NR2F2!1.23!116.40!NR2F2;;chr12:54379029..54379057,+!p2@HOXC10!1.23!16.10!HOXC10;;chr17:46675558..46675577,-!p2@HOXB6!1.23!15.84!HOXB6;;chr17:46667628..46667642,-!p2@HOXB3!1.22!15.63!HOXB3;;chr5:3595934..3595957,+!p2@IRX1!1.22!15.42!IRX1;;chr2:16080659..16080685,+!p1@MYCN!1.21!15.21!MYCN;;chr8:102504651..102504683,+!p1@GRHL2!1.21!15.11!GRHL2;;chr11:16419037..16419064,-!p3@SOX6!1.21!15.05!SOX6;;chr4:149363494..149363543,-!p1@NR3C2!1.20!14.79!NR3C2;;chr5:169532896..169532904,+!p1@FOXI1!1.19!14.58!FOXI1;;chr3:168865250..168865272,-!p5@MECOM!1.19!14.53!MECOM;;chr17:46667561..46667572,-!p4@HOXB3!1.19!14.48!HOXB3;;chr17:59477197..59477212,+!p2@TBX2!1.18!24.08!TBX2;;chr6:1312325..1312340,+!p1@FOXQ1!1.18!22.82!FOXQ1;;chr8:55370487..55370503,+!p1@SOX17!1.17!13.85!SOX17;;chr17:46692603..46692621,-!p6@HOXB8!1.17!13.74!HOXB8;;chr15:96873921..96873946,+!p1@NR2F2!1.16!373.32!NR2F2;;chr12:54378923..54378966,+!p1@HOXC10!1.16!13.38!HOXC10;;chr15:96874012..96874042,+!p2@NR2F2!1.14!114.30!NR2F2;;chr3:25469815..25469866,+!p3@RARB!1.14!12.75!RARB;;chr15:80696703..80696754,+!p1@ARNT2!1.13!16.79!ARNT2;;chr10:77161650..77161661,-!p4@ZNF503!1.12!16.94!ZNF503;;chr17:6926362..6926377,+!p1@BCL6B!1.12!12.22!BCL6B;;chr6:100912752..100912778,-!p2@SIM1!1.12!12.06!SIM1;;chr12:52445218..52445237,+!p1@NR4A1!1.11!148.60!NR4A1;;chr1:214161272..214161322,+!p1@PROX1!1.11!16.63!PROX1;;chr17:59477275..5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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001008;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002113;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122
 |ffid_belonging_in_development=UBERON:0003104,UBERON:0003918,UBERON:0007687
 |fonse_cell_line=
@@ Line 41: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/kidney%252c%2520fetal%252c%2520pool1.CNhs10652.10045-101F9.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/kidney%252c%2520fetal%252c%2520pool1.CNhs10652.10045-101F9.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/kidney%252c%2520fetal%252c%2520pool1.CNhs10652.10045-101F9.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/kidney%252c%2520fetal%252c%2520pool1.CNhs10652.10045-101F9.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/kidney%252c%2520fetal%252c%2520pool1.CNhs10652.10045-101F9.hg38.nobarcode.ctss.bed.gz
 |id=FF:10045-101F9
 |is_a=EFO:0002091;;FF:0010045
@@ Line 46: / Line 52: @@
 |library_id=CNhs10652
 |library_id_phase_based=2:CNhs10652
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10045
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10045
 |name=kidney, fetal, pool1
 |namespace=FANTOM5
@@ Line 53: / Line 63: @@
 |profile_rnaseq=
 |profile_srnaseq=,,,
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@@ Line 90: / Line 101: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10045-101F9;search_select_hide=table117:FF:10045-101F9
 }}

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FF:10045-101F9: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 12:17, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0