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{{f5samples
{{f5samples
|id=FF:10045-101F9
|DRA_sample_Accession=CAGE@SAMD00005649
|name=kidney, fetal, pool1
|accession_numbers=CAGE;DRX008671;DRR009543;DRZ000968;DRZ002353;DRZ012318;DRZ013703
|sample_id=10045
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002113,UBERON:0002100,UBERON:0000479,UBERON:0000062,UBERON:0000475,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0009569,UBERON:0000489,UBERON:0005177,UBERON:0005172,UBERON:0005173,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0000916
|rna_tube_id=101F9
|rna_box=101
|rna_position=F9
|sample_cell_lot=NA
|sample_cell_catalog=NA
|sample_company=Clontech
|rna_lot_number=8082007A
|rna_catalog_number=Cat:636584
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=12-31 weeks fetus
|sample_tissue=kidney
|sample_donor(cell lot)=34 pool
|sample_sex=mixed
|sample_age=
|sample_ethnicity=C
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=CELL MIXTURE - tissue sample
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=normal
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_weight_ug=50
|rna_concentration=1
|sample_note=
|profile_hcage=CNhs10652,LSID658,release008,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000489,UBERON:0000916,UBERON:0000922,UBERON:0001008,UBERON:0001062,UBERON:0002100,UBERON:0002113,UBERON:0002417,UBERON:0003103,UBERON:0005095,UBERON:0005172,UBERON:0005173,UBERON:0005177,UBERON:0005423,UBERON:0006554,UBERON:0007687
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000999,FF:0000004,FF:0010045
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr6:134210243..134210257,+!p1@TCF21!2.72!525.39!TCF21;;chr2:114036488..114036504,-!p1@PAX8!2.39!243.13!PAX8;;chr17:36105042..36105060,-!p1@HNF1B!2.11!127.05!HNF1B;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!2.04!107.69!POU3F3;;chr13:72441315..72441454,-!p1@DACH1!2.02!199.75!DACH1;;chr17:46682321..46682362,-!p1@HOXB6!2.02!102.92!HOXB6;;chr2:122042770..122042785,-!p1@TFCP2L1!1.99!97.04!TFCP2L1;;chr7:27192185..27192209,-!p1@HOXA3!1.92!81.99!HOXA3;;chr1:201979743..201979762,+!p1@ELF3!1.84!67.67!ELF3;;chr11:32457413..32457431,-!p2@WT1!1.82!65.10!WT1;;chr10:102505327..102505344,+!p1@PAX2!1.80!62.16!PAX2;;chr19:46800289..46800327,+!p2@HIF3A!1.79!60.95!HIF3A;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.79!60.53!HOXC5;;chr11:32457075..32457095,-!p1@WT1!1.78!59.06!WT1;;chr17:46667594..46667619,-!p1@HOXB3!1.77!57.33!HOXB3;;chr2:177001290..177001315,+!p1@HOXD3!1.75!55.44!HOXD3;;chr7:27205136..27205164,-!p1@HOXA9!1.68!46.74!HOXA9;;chr3:128212033..128212051,-!p1@GATA2!1.62!40.23!GATA2;;chr10:119302232..119302265,+!p1@EMX2!1.59!38.29!EMX2;;chr10:8096631..8096660,+!p1@GATA3!1.57!43.43!GATA3;;chr1:201979703..201979721,+!p2@ELF3!1.57!36.19!ELF3;;chr17:35294075..35294102,+!p1@ENST00000559335!1.56!35.62!LHX1;;chr20:62680984..62680999,-!p1@SOX18!1.53!43.07!SOX18;;chr19:46801639..46801699,+!p1@HIF3A!1.51!31.42!HIF3A;;chr19:12348371..12348386,-!p5@ZNF44!1.50!30.69!ZNF44;;chr21:39870339..39870443,-!p1@ERG!1.50!30.53!ERG;;chr3:169381420..169381535,-!p1@MECOM!1.48!34.20!MECOM;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.47!28.64!POU3F3;;chr1:40105299..40105326,-!p1@HEYL!1.47!28.54!HEYL;;chr13:72441074..72441172,-!p2@DACH1!1.46!27.91!DACH1;;chr7:27224842..27224872,-!p1@HOXA11!1.45!27.43!HOXA11;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.45!26.96!PEG3;;chrX:85403445..85403479,+!p2@DACH2!1.44!26.59!DACH2;;chr6:19837592..19837621,+!p1@ID4!1.43!151.59!ID4;;chr17:46703687..46703740,-!p1@HOXB9!1.42!25.39!HOXB9;;chr5:92918919..92918942,+!p1@NR2F1!1.40!105.49!NR2F1;;chr17:59477233..59477263,+!p1@TBX2!1.40!72.91!TBX2;;chr16:86600426..86600441,+!p1@FOXC2!1.40!57.75!FOXC2;;chr2:73144617..73144654,+!p1@EMX1!1.40!24.39!EMX1;;chr2:176973498..176973524,+!p1@HOXD10!1.40!24.23!HOXD10;;chr20:39317868..39317884,-!p1@MAFB!1.39!266.52!MAFB;;chr17:46692624..46692659,-!p3@HOXB8!1.37!22.19!HOXB8;;chr7:27213893..27213954,-!p1@HOXA10!1.36!22.03!HOXA10;;chr21:38071430..38071456,+!p1@SIM2!1.36!21.87!SIM2;;chr2:145277882..145277967,-!p3@ZEB2!1.35!36.19!ZEB2;;chr11:34642612..34642646,+!p1@EHF!1.35!21.56!EHF;;chr2:176981499..176981522,+!p2@HOXD10!1.34!20.72!HOXD10;;chr17:46622205..46622218,-!p3@HOXB2!1.33!23.71!HOXB2;;chrY:21906594..21906622,-!p1@KDM5D!1.33!20.30!KDM5D;;chr11:113930425..113930471,+!p1@ZBTB16!1.32!28.54!ZBTB16;;chr7:27224795..27224840,-!p2@HOXA11!1.32!20.09!HOXA11;;chr12:54393880..54393962,+!p1@HOXC9!1.32!20.04!HOXC9;;chr2:176994408..176994492,+!p1@HOXD8!1.32!19.72!HOXD8;;chr17:46622440..46622477,-!p5@HOXB2!1.30!21.03!HOXB2;;chr3:69915369..69915381,+!p4@MITF!1.29!18.67!MITF;;chr20:43029862..43029900,+!p1@HNF4A!1.29!18.57!HNF4A;;chr10:119302268..119302282,+!p4@EMX2!1.29!18.36!EMX2;;chr5:3595961..3595975,+!p3@IRX1!1.28!18.20!IRX1;;chr5:2751762..2751784,-!p1@IRX2!1.27!17.83!IRX2;;chr1:209979467..209979494,-!p1@IRF6!1.26!19.51!IRF6;;chr1:27240455..27240474,-!p1@NR0B2!1.26!17.36!NR0B2;;chr15:57511609..57511651,+!p2@TCF12!1.25!27.85!TCF12;;chr5:2751785..2751808,-!p2@IRX2!1.25!16.84!IRX2;;chr1:217311025..217311049,-!p10@ESRRG!1.24!16.52!ESRRG;;chr3:69915385..69915438,+!p3@MITF!1.24!16.42!MITF;;chr15:96873984..96873999,+!p3@NR2F2!1.23!116.40!NR2F2;;chr12:54379029..54379057,+!p2@HOXC10!1.23!16.10!HOXC10;;chr17:46675558..46675577,-!p2@HOXB6!1.23!15.84!HOXB6;;chr17:46667628..46667642,-!p2@HOXB3!1.22!15.63!HOXB3;;chr5:3595934..3595957,+!p2@IRX1!1.22!15.42!IRX1;;chr2:16080659..16080685,+!p1@MYCN!1.21!15.21!MYCN;;chr8:102504651..102504683,+!p1@GRHL2!1.21!15.11!GRHL2;;chr11:16419037..16419064,-!p3@SOX6!1.21!15.05!SOX6;;chr4:149363494..149363543,-!p1@NR3C2!1.20!14.79!NR3C2;;chr5:169532896..169532904,+!p1@FOXI1!1.19!14.58!FOXI1;;chr3:168865250..168865272,-!p5@MECOM!1.19!14.53!MECOM;;chr17:46667561..46667572,-!p4@HOXB3!1.19!14.48!HOXB3;;chr17:59477197..59477212,+!p2@TBX2!1.18!24.08!TBX2;;chr6:1312325..1312340,+!p1@FOXQ1!1.18!22.82!FOXQ1;;chr8:55370487..55370503,+!p1@SOX17!1.17!13.85!SOX17;;chr17:46692603..46692621,-!p6@HOXB8!1.17!13.74!HOXB8;;chr15:96873921..96873946,+!p1@NR2F2!1.16!373.32!NR2F2;;chr12:54378923..54378966,+!p1@HOXC10!1.16!13.38!HOXC10;;chr15:96874012..96874042,+!p2@NR2F2!1.14!114.30!NR2F2;;chr3:25469815..25469866,+!p3@RARB!1.14!12.75!RARB;;chr15:80696703..80696754,+!p1@ARNT2!1.13!16.79!ARNT2;;chr10:77161650..77161661,-!p4@ZNF503!1.12!16.94!ZNF503;;chr17:6926362..6926377,+!p1@BCL6B!1.12!12.22!BCL6B;;chr6:100912752..100912778,-!p2@SIM1!1.12!12.06!SIM1;;chr12:52445218..52445237,+!p1@NR4A1!1.11!148.60!NR4A1;;chr1:214161272..214161322,+!p1@PROX1!1.11!16.63!PROX1;;chr17:59477275..59477286,+!p3@TBX2!1.11!15.95!TBX2;;chr17:46703212..46703238,-!p2@HOXB9!1.11!11.96!HOXB9;;chr1:151804244..151804310,-!p1@RORC!1.11!11.91!RORC;;chr5:71803177..71803255,-!p1@ZNF366!1.11!11.75!ZNF366;;chr3:126076242..126076257,-!p1@KLF15!1.10!14.32!KLF15;;chr2:242556880..242556899,-!p5@THAP4!1.10!11.70!THAP4;;chr11:125034640..125034655,+!p1@PKNOX2!1.10!11.70!PKNOX2;;chr13:72441506..72441562,-!p3@DACH1!1.10!11.64!DACH1;;chr8:10588010..10588030,-!p1@SOX7!1.10!11.64!SOX7;;chr2:176987463..176987479,+!p2@HOXD9!1.10!11.54!HOXD9;;chr5:92919100..92919135,+!p3@NR2F1!1.09!13.95!NR2F1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.09!11.44!HOXC5;;chr17:46690839..46690884,-!p1@HOXB8!1.09!11.38!HOXB8;;chr7:73038839..73038862,-!p1@MLXIPL!1.09!11.33!MLXIPL;;chr16:51185573..51185593,-!p3@SALL1!1.09!11.17!SALL1;;chr10:102505493..102505546,+!p2@PAX2!1.08!10.96!PAX2;;chr16:79634624..79634642,-!p1@MAF!1.07!42.86!MAF;;chr3:25469724..25469773,+!p1@RARB!1.07!15.58!RARB;;chr1:47903709..47903764,+!p1@BC169308!1.07!12.27!FOXD2;;chr17:46692457..46692484,-!p2@HOXB8!1.07!10.81!HOXB8;;chr10:119302150..119302163,+!p8@EMX2!1.07!10.75!EMX2;;chr7:27205106..27205134,-!p2@HOXA9!1.06!10.49!HOXA9;;chr6:10412600..10412637,-!p1@TFAP2A!1.05!17.00!TFAP2A;;chr17:53342311..53342400,+!p1@HLF!1.05!11.80!HLF;;chr10:102505954..102505973,+!p3@PAX2!1.05!10.33!PAX2;;chr4:149363475..149363492,-!p2@NR3C2!1.05!10.18!NR3C2;;chr2:176987441..176987454,+!p1@HOXD9!1.04!10.07!HOXD9;;chr10:102495147..102495159,+!p4@PAX2!1.04!9.86!PAX2;;chr12:85673868..85673881,+!p2@ALX1!1.04!9.86!ALX1;;chr7:27196217..27196246,-!p2@HOXA7!1.04!9.86!HOXA7;;chr11:61520075..61520136,+!p1@C11orf9!1.03!20.82!C11orf9;;chr17:46688334..46688385,-!p1@HOXB7!1.03!14.01!HOXB7;;chr11:47400078..47400106,-!p1@SPI1!1.03!9.76!SPI1;;chr5:3595977..3595999,+!p1@IRX1!1.03!9.70!IRX1;;chr3:114819124..114819200,-!p3@ZBTB20!1.02!22.40!ZBTB20;;chr11:113930291..113930339,+!p2@ZBTB16!1.02!15.63!ZBTB16;;chr3:12330560..12330579,+!p1@PPARG!1.02!10.96!PPARG;;chr10:119303078..119303169,+!p2@EMX2!1.02!9.39!EMX2;;chr22:41763452..41763466,+!p2@TEF!1.01!9.34!TEF;;chr1:2985760..2985774,+!p1@PRDM16!1.01!9.34!PRDM16;;chr16:51185172..51185197,-!p1@SALL1!1.01!9.28!SALL1;;chr2:177053386..177053402,+!p1@HOXD1!1.01!9.23!HOXD1;;chr17:74137321..74137337,-!p1@FOXJ1!1.01!9.18!FOXJ1;;chr10:8095593..8095625,+!p3@GATA3!1.00!10.70!GATA3;;chr6:50789717..50789729,+!p4@TFAP2B!1.00!9.07!TFAP2B;;chr2:176994077..176994091,+!p8@HOXD8!1.00!9.02!HOXD8;;chr12:52437488..52437507,+!p2@NR4A1!1.00!8.97!NR4A1;;chr6:10415276..10415341,-!p2@TFAP2A!0.99!10.91!TFAP2A;;chr11:34535332..34535347,-!p2@ELF5!0.99!8.81!ELF5;;chr2:176981526..176981543,+!p3@HOXD10!0.99!8.71!HOXD10;;chr2:25475120..25475176,-!p2@DNMT3A!0.98!11.70!DNMT3A;;chr20:61051039..61051057,-!p1@GATA5!0.98!8.66!GATA5;;chr10:119302182..119302196,+!p6@EMX2!0.98!8.45!EMX2;;chr1:164528410..164528428,+!p1@PBX1!0.97!63.73!PBX1;;chr15:37392724..37392757,-!p1@MEIS2!0.97!39.45!MEIS2;;chr1:10754477..10754517,-!p1@CASZ1!0.97!14.06!CASZ1;;chr11:128457446..128457461,-!p4@ETS1!0.96!8.08!ETS1;;chr12:121416340..121416360,+!p1@HNF1A!0.96!8.08!HNF1A;;chr3:114819101..114819121,-!p7@ZBTB20!0.96!8.08!ZBTB20;;chr17:1959369..1959388,+!p2@HIC1!0.95!21.61!HIC1;;chr20:2673383..2673441,+!p1@EBF4!0.95!12.80!EBF4;;chr11:113930401..113930422,+!p3@ZBTB16!0.95!7.97!ZBTB16;;chr7:1272522..1272537,+!p2@UNCX!0.95!7.82!UNCX;;chr1:204042233..204042249,+!p1@SOX13!0.94!49.83!SOX13;;chr16:79634595..79634620,-!p2@MAF!0.94!14.37!MAF;;chr3:25470156..25470227,+!p2@RARB!0.94!7.76!RARB;;chr3:128206762..128206781,-!p2@GATA2!0.93!48.31!GATA2;;chr3:126076264..126076305,-!p2@KLF15!0.93!10.60!KLF15;;chr10:8096772..8096787,+!p2@GATA3!0.93!8.92!GATA3;;chr18:42260840..42260860,+!p2@SETBP1!0.93!7.55!SETBP1;;chr3:169381183..169381205,-!p4@MECOM!0.93!7.50!MECOM;;chr17:46622229..46622257,-!p6@HOXB2!0.92!8.60!HOXB2;;chr11:65554528..65554546,+!p1@OVOL1!0.92!7.40!OVOL1;;chr16:51185489..51185501,-!p6@SALL1!0.92!7.24!SALL1;;chr18:6414884..6414942,-!p1@L3MBTL4!0.91!8.97!L3MBTL4;;chr16:79634581..79634592,-!p4@MAF!0.91!7.19!MAF;;chr1:41174988..41175047,+!p4@NFYC!0.90!19.25!NFYC;;chr2:105470614..105470625,+!p@chr2:105470614..105470625,+!0.90!6.98!POU3F3;;chr11:34535297..34535317,-!p1@ELF5!0.90!6.87!ELF5;;chr5:92918894..92918912,+!p2@NR2F1!0.89!22.98!NR2F1;;chr5:92918768..92918783,+!p8@NR2F1!0.89!6.82!NR2F1;;chr1:10856639..10856662,-!p2@CASZ1!0.89!6.71!CASZ1;;chr2:166326200..166326216,+!p1@CSRNP3!0.88!9.91!CSRNP3;;chr20:51588873..51588953,+!p1@TSHZ2!0.88!8.76!TSHZ2;;chr3:168865194..168865245,-!p3@MECOM!0.88!8.71!MECOM;;chr4:57522513..57522548,-!p4@HOPX!0.88!6.66!HOPX;;chr1:10856665..10856683,-!p4@CASZ1!0.88!6.61!CASZ1;;chr2:73144683..73144697,+!p3@EMX1!0.88!6.56!EMX1;;chr6:100912785..100912822,-!p1@SIM1!0.88!6.56!SIM1;;chr18:42260920..42260951,+!p4@SETBP1!0.88!6.50!SETBP1;;chr18:53068911..53068935,-!p4@TCF4!0.87!7.29!TCF4;;chr16:85932760..85932775,+!p1@IRF8!0.87!6.45!IRF8;;chr17:46703826..46703845,-!p3@HOXB9!0.87!6.40!HOXB9;;chr2:176971685..176971700,+!p6@HO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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001008;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002113;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0004122
|ffid_belonging_in_development=UBERON:0003104,UBERON:0003918,UBERON:0007687
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 66: Line 41:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|top_motifs=HNF1A:5.10119208143;SP1:3.01633342208;HNF4A_NR2F1,2:2.77052937934;MAZ:2.74338171259;TFCP2:2.26006426565;NKX2-3_NKX2-5:2.2352527381;PATZ1:2.17745681963;ADNP_IRX_SIX_ZHX:2.11186646255;MED-1{core}:2.06347690795;MZF1:2.04041667879;XCPE1{core}:1.98876644077;HIC1:1.95876607594;TFAP2{A,C}:1.92969345467;EP300:1.89872591837;PBX1:1.83264890166;HOX{A6,A7,B6,B7}:1.81613252205;TBP:1.79235762797;PAX5:1.73501918144;FOX{D1,D2}:1.68051892138;GTF2I:1.64744895721;TFAP2B:1.6094418305;RREB1:1.60085402349;FOXQ1:1.58441098776;RXRA_VDR{dimer}:1.52888632725;HBP1_HMGB_SSRP1_UBTF:1.50650435666;SNAI1..3:1.48022078381;VSX1,2:1.46510922243;SOX5:1.41584294711;GFI1:1.38578160153;EGR1..3:1.34335846127;TLX1..3_NFIC{dimer}:1.28690185623;SREBF1,2:1.28570704777;GTF2A1,2:1.25095750689;TEAD1:1.21688465523;ZEB1:1.21134361916;RBPJ:1.21004580934;PAX6:1.20021417208;STAT1,3:1.18855868251;T:1.17584069808;MTF1:1.14707312041;NKX3-2:1.1256283234;SPZ1:1.08615536545;GFI1B:1.06537211922;MTE{core}:1.06287674804;ZFP161:1.05017946383;SMAD1..7,9:1.04802874941;ESR1:1.02571689319;ESRRA:1.02323078333;PRRX1,2:1.00932917444;NANOG{mouse}:0.964746846694;IKZF1:0.949065922805;NFATC1..3:0.904759588003;PRDM1:0.889322582922;TGIF1:0.887131406638;NR5A1,2:0.861268158217;POU2F1..3:0.84530119505;FOX{I1,J2}:0.829874316567;ATF2:0.811702665688;SOX2:0.751512869225;ZIC1..3:0.746728625562;GCM1,2:0.744271627301;SOX{8,9,10}:0.74164394033;LMO2:0.735689873657;MYBL2:0.719404755182;BREu{core}:0.719045298012;MYOD1:0.684953680821;RFX1:0.683067413119;EBF1:0.673100957341;RXR{A,B,G}:0.668860364173;HIF1A:0.64763795616;GZF1:0.638363173382;FOXO1,3,4:0.608603174803;AR:0.599060217115;MYFfamily:0.595474434347;LEF1_TCF7_TCF7L1,2:0.541205227002;NFY{A,B,C}:0.506477898141;HAND1,2:0.478611514629;POU6F1:0.473398508538;NR6A1:0.465561566774;NKX2-1,4:0.443934062632;SRF:0.438329353978;ZNF143:0.426036727665;ZNF423:0.421117203935;DBP:0.414655871405;TLX2:0.407855973347;ZNF148:0.395025242813;JUN:0.350918980986;BPTF:0.350563009671;FOXD3:0.341769779254;IRF7:0.324172994361;PAX1,9:0.322079755805;MEF2{A,B,C,D}:0.304933928125;GATA6:0.290186710927;NHLH1,2:0.26254814669;ATF4:0.222073890893;ZNF238:0.216097480891;FOXN1:0.21336003464;TFAP4:0.204364263619;CUX2:0.193690849739;GLI1..3:0.162936494123;NRF1:0.154406590811;bHLH_family:0.14775571582;ALX1:0.144696254605;LHX3,4:0.14315390529;ETS1,2:0.125839819769;POU5F1:0.123921796496;PDX1:0.118834970535;FOXM1:0.102122723661;TBX4,5:0.0641346952731;KLF4:0.0297126064201;NANOG:0.0219152310076;REST:-0.0275130232703;ATF6:-0.0548523399846;STAT2,4,6:-0.056228271023;XBP1:-0.0909282671231;ZBTB6:-0.0966293939722;SPIB:-0.129625103499;PAX2:-0.132072678297;RFX2..5_RFXANK_RFXAP:-0.15632340881;CREB1:-0.167348483386;TP53:-0.167885786197;PITX1..3:-0.174875733056;MAFB:-0.175262499121;SPI1:-0.200243651615;ONECUT1,2:-0.20217687935;SOX17:-0.22282909647;RORA:-0.224737151071;EN1,2:-0.228016299981;FOXL1:-0.231064757803;CDC5L:-0.240630719932;TOPORS:-0.24171607191;IRF1,2:-0.273162245486;POU3F1..4:-0.283509667356;NFKB1_REL_RELA:-0.291715308023;ZNF384:-0.310529156865;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.313547905103;HLF:-0.332006614814;FOXP3:-0.33795116085;PPARG:-0.375146947099;HSF1,2:-0.389055312594;TAL1_TCF{3,4,12}:-0.396151863819;ELF1,2,4:-0.396201456865;HOX{A5,B5}:-0.397467683795;NFE2:-0.410638693698;ATF5_CREB3:-0.430415283375;E2F1..5:-0.439634398945;NFIX:-0.462754692922;NFE2L2:-0.474985931945;TFDP1:-0.489532234322;FOXP1:-0.495449826937;HMX1:-0.497724658408;IKZF2:-0.516128237684;FOXA2:-0.532438847285;STAT5{A,B}:-0.573176842354;HOXA9_MEIS1:-0.59363052723;BACH2:-0.616793388243;CEBPA,B_DDIT3:-0.626777705445;NR3C1:-0.640203654633;ELK1,4_GABP{A,B1}:-0.668536631327;FOS_FOS{B,L1}_JUN{B,D}:-0.671807462968;AHR_ARNT_ARNT2:-0.674277191977;FOSL2:-0.683283045415;OCT4_SOX2{dimer}:-0.712916757891;YY1:-0.757209915374;RUNX1..3:-0.791573506278;NFIL3:-0.802208294813;FOX{F1,F2,J1}:-0.80699317205;NR1H4:-0.816809216728;NKX6-1,2:-0.846442899695;PAX8:-0.883997080522;ARID5B:-0.960284178742;ALX4:-1.02688685397;HES1:-1.03483776648;DMAP1_NCOR{1,2}_SMARC:-1.05758966615;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.0693214433;POU1F1:-1.10338330477;UFEwm:-1.12490558516;PAX3,7:-1.14388153911;GATA4:-1.16361267248;NKX3-1:-1.23239850623;CRX:-1.24766983545;MYB:-1.25538092057;HMGA1,2:-1.30632012177;AIRE:-1.40450764953;HOX{A4,D4}:-1.47085897831;TEF:-1.52826349902;ZBTB16:-1.9044410152;PAX4:-1.93886941399;EVI1:-1.98612799334;CDX1,2,4:-2.04130461455;NFE2L1:-2.14821155424;NKX2-2,8:-2.59260135559
|comment=
|created_by=
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|rna_box=101
|rna_catalog_number=Cat:636584
|rna_concentration=1
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_lot_number=8082007A
|rna_od260/230=
|rna_od260/280=
|rna_position=F9
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=101F9
|rna_weight_ug=50
|sample_age=
|sample_category=tissues
|sample_cell_catalog=NA
|sample_cell_line=
|sample_cell_lot=NA
|sample_cell_type=CELL MIXTURE - tissue sample
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Clontech
|sample_description=
|sample_dev_stage=12-31 weeks fetus
|sample_disease=normal
|sample_donor(cell lot)=34 pool
|sample_ethnicity=C
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.42182598409278e-225!GO:0005737;cytoplasm;2.21932502221911e-170!GO:0043226;organelle;7.94044200521596e-137!GO:0043229;intracellular organelle;1.47192124360725e-136!GO:0043231;intracellular membrane-bound organelle;1.64584603803367e-135!GO:0043227;membrane-bound organelle;1.94945908355533e-135!GO:0044444;cytoplasmic part;5.20391314644544e-118!GO:0005515;protein binding;7.17702581931504e-88!GO:0044422;organelle part;6.65667458663099e-81!GO:0044446;intracellular organelle part;1.27865018004218e-79!GO:0044237;cellular metabolic process;5.41850446498888e-67!GO:0044238;primary metabolic process;7.5343984192691e-66!GO:0032991;macromolecular complex;2.24991454948737e-54!GO:0043170;macromolecule metabolic process;1.11363964592866e-53!GO:0005739;mitochondrion;4.53729925095864e-53!GO:0043233;organelle lumen;2.51110498635596e-43!GO:0031974;membrane-enclosed lumen;2.51110498635596e-43!GO:0016043;cellular component organization and biogenesis;4.54344272229448e-43!GO:0030529;ribonucleoprotein complex;5.86342469311561e-42!GO:0031090;organelle membrane;5.28763998093988e-41!GO:0005634;nucleus;3.44613947536555e-39!GO:0019538;protein metabolic process;3.38563493695305e-38!GO:0044428;nuclear part;4.20921338502853e-38!GO:0003723;RNA binding;7.90126290685718e-38!GO:0044429;mitochondrial part;3.74510522269026e-35!GO:0033036;macromolecule localization;4.74682246114577e-34!GO:0044260;cellular macromolecule metabolic process;6.92620350700652e-33!GO:0015031;protein transport;8.749884034886e-33!GO:0031967;organelle envelope;1.43287512275147e-32!GO:0031975;envelope;2.4466692470549e-32!GO:0044267;cellular protein metabolic process;6.83978560204061e-32!GO:0008104;protein localization;2.47194714053493e-31!GO:0045184;establishment of protein localization;2.43216933222081e-30!GO:0043234;protein complex;2.30563997342188e-29!GO:0005829;cytosol;2.16815242685211e-26!GO:0046907;intracellular transport;2.62857986654397e-26!GO:0009058;biosynthetic process;4.27811764270225e-26!GO:0005840;ribosome;2.71914996508294e-25!GO:0065003;macromolecular complex assembly;3.54240424075727e-25!GO:0043283;biopolymer metabolic process;3.91279700601467e-25!GO:0016071;mRNA metabolic process;4.26284663423705e-25!GO:0019866;organelle inner membrane;5.44774763784665e-24!GO:0005740;mitochondrial envelope;5.90276954638712e-24!GO:0031966;mitochondrial membrane;2.75657684742714e-23!GO:0006412;translation;3.09915123606688e-23!GO:0008380;RNA splicing;3.48971437090743e-23!GO:0031981;nuclear lumen;5.39727594956297e-23!GO:0006886;intracellular protein transport;8.58475821454871e-23!GO:0022607;cellular component assembly;8.81822617663761e-23!GO:0044249;cellular biosynthetic process;8.81822617663761e-23!GO:0010467;gene expression;9.16264950074605e-23!GO:0005743;mitochondrial inner membrane;1.11151073694947e-22!GO:0006396;RNA processing;3.20676119837118e-22!GO:0003735;structural constituent of ribosome;1.89907331105939e-21!GO:0009059;macromolecule biosynthetic process;3.26213220684528e-21!GO:0006397;mRNA processing;3.8090165846995e-20!GO:0006996;organelle organization and biogenesis;6.21798021245629e-20!GO:0033279;ribosomal subunit;8.79914600114335e-20!GO:0006119;oxidative phosphorylation;1.85017831097685e-19!GO:0008134;transcription factor binding;2.42961793043713e-19!GO:0048770;pigment granule;1.69688584572829e-18!GO:0042470;melanosome;1.69688584572829e-18!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.38259888956303e-17!GO:0005794;Golgi apparatus;2.61266227942926e-17!GO:0051649;establishment of cellular localization;2.26578429863496e-16!GO:0051641;cellular localization;2.6201652143048e-16!GO:0005681;spliceosome;2.73368004114264e-16!GO:0005783;endoplasmic reticulum;4.16340481893901e-16!GO:0005830;cytosolic ribosome (sensu Eukaryota);6.07920085252633e-16!GO:0016192;vesicle-mediated transport;6.67311276212756e-16!GO:0005654;nucleoplasm;8.24619251978139e-16!GO:0044248;cellular catabolic process;1.66574791011738e-15!GO:0031980;mitochondrial lumen;3.60762606153943e-15!GO:0005759;mitochondrial matrix;3.60762606153943e-15!GO:0012505;endomembrane system;5.15548308976441e-15!GO:0044265;cellular macromolecule catabolic process;7.17561702908732e-15!GO:0044445;cytosolic part;2.92825184363442e-14!GO:0048523;negative regulation of cellular process;2.3796581844932e-13!GO:0051186;cofactor metabolic process;3.20295511000035e-13!GO:0043228;non-membrane-bound organelle;3.80392927028867e-13!GO:0043232;intracellular non-membrane-bound organelle;3.80392927028867e-13!GO:0044451;nucleoplasm part;4.32301816634314e-13!GO:0044455;mitochondrial membrane part;4.61095477142209e-13!GO:0050794;regulation of cellular process;5.32250182922048e-13!GO:0016874;ligase activity;5.77761354870073e-13!GO:0003712;transcription cofactor activity;7.86630532699012e-13!GO:0000166;nucleotide binding;8.58157168783067e-13!GO:0005746;mitochondrial respiratory chain;1.09096971324485e-12!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.7162229549277e-12!GO:0009057;macromolecule catabolic process;4.04755270396503e-12!GO:0048193;Golgi vesicle transport;1.01691852483276e-11!GO:0043412;biopolymer modification;1.01691852483276e-11!GO:0015935;small ribosomal subunit;1.13132735862385e-11!GO:0050136;NADH dehydrogenase (quinone) activity;1.19632833603014e-11!GO:0003954;NADH dehydrogenase activity;1.19632833603014e-11!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.19632833603014e-11!GO:0006605;protein targeting;1.65137445270081e-11!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.02035320747554e-11!GO:0048519;negative regulation of biological process;2.42612524164342e-11!GO:0050789;regulation of biological process;2.44574744757719e-11!GO:0006464;protein modification process;2.5616442753735e-11!GO:0006732;coenzyme metabolic process;2.92157761114752e-11!GO:0006461;protein complex assembly;3.03044201269896e-11!GO:0051603;proteolysis involved in cellular protein catabolic process;3.23177522749712e-11!GO:0006511;ubiquitin-dependent protein catabolic process;4.46503278304086e-11!GO:0019941;modification-dependent protein catabolic process;5.93666449116299e-11!GO:0043632;modification-dependent macromolecule catabolic process;5.93666449116299e-11!GO:0006512;ubiquitin cycle;6.03015694793577e-11!GO:0043285;biopolymer catabolic process;7.89187254625477e-11!GO:0044257;cellular protein catabolic process;9.65163196591218e-11!GO:0006457;protein folding;1.22973944169374e-10!GO:0016070;RNA metabolic process;1.54233131912934e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.60793038720328e-10!GO:0009056;catabolic process;2.14293985159995e-10!GO:0043687;post-translational protein modification;2.34954667010489e-10!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.33164671311676e-10!GO:0031982;vesicle;3.33164671311676e-10!GO:0030036;actin cytoskeleton organization and biogenesis;4.17027708828274e-10!GO:0006366;transcription from RNA polymerase II promoter;5.61161311535977e-10!GO:0031410;cytoplasmic vesicle;5.77763794856084e-10!GO:0031988;membrane-bound vesicle;6.79045112853066e-10!GO:0044432;endoplasmic reticulum part;6.93586090188444e-10!GO:0022618;protein-RNA complex assembly;7.24931335792905e-10!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;7.49178225476542e-10!GO:0042775;organelle ATP synthesis coupled electron transport;8.48100967908105e-10!GO:0042773;ATP synthesis coupled electron transport;8.48100967908105e-10!GO:0030964;NADH dehydrogenase complex (quinone);8.48100967908105e-10!GO:0045271;respiratory chain complex I;8.48100967908105e-10!GO:0005747;mitochondrial respiratory chain complex I;8.48100967908105e-10!GO:0016023;cytoplasmic membrane-bound vesicle;9.78227650331471e-10!GO:0005635;nuclear envelope;1.74673086299133e-09!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.97557442939313e-09!GO:0006913;nucleocytoplasmic transport;2.02599493828694e-09!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.22424775278133e-09!GO:0016462;pyrophosphatase activity;2.2271742640201e-09!GO:0030163;protein catabolic process;2.40217888468778e-09!GO:0005773;vacuole;2.55077882277467e-09!GO:0016564;transcription repressor activity;2.77024386163858e-09!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;2.82472762940579e-09!GO:0016817;hydrolase activity, acting on acid anhydrides;2.89825651455745e-09!GO:0006793;phosphorus metabolic process;3.27903407745132e-09!GO:0006796;phosphate metabolic process;3.27903407745132e-09!GO:0015934;large ribosomal subunit;3.80712509281106e-09!GO:0030029;actin filament-based process;4.60991757140007e-09!GO:0008565;protein transporter activity;4.6891852400303e-09!GO:0065007;biological regulation;5.07736375574384e-09!GO:0051169;nuclear transport;5.26004365764674e-09!GO:0008092;cytoskeletal protein binding;5.32784956472083e-09!GO:0051082;unfolded protein binding;6.12128211956235e-09!GO:0003676;nucleic acid binding;6.29570203465063e-09!GO:0016604;nuclear body;6.32964324582293e-09!GO:0015986;ATP synthesis coupled proton transport;6.68545801455059e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;6.68545801455059e-09!GO:0006325;establishment and/or maintenance of chromatin architecture;6.88083339056611e-09!GO:0017111;nucleoside-triphosphatase activity;7.89672920537304e-09!GO:0009055;electron carrier activity;9.52045807711115e-09!GO:0005793;ER-Golgi intermediate compartment;9.97905292012302e-09!GO:0012501;programmed cell death;1.22490407810088e-08!GO:0016044;membrane organization and biogenesis;1.34342861229869e-08!GO:0016607;nuclear speck;1.54787718890881e-08!GO:0006259;DNA metabolic process;1.56191288445785e-08!GO:0000398;nuclear mRNA splicing, via spliceosome;1.8302289821402e-08!GO:0000375;RNA splicing, via transesterification reactions;1.8302289821402e-08!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.8302289821402e-08!GO:0006915;apoptosis;1.90729963671899e-08!GO:0005768;endosome;2.01230528838827e-08!GO:0045333;cellular respiration;2.34490635145739e-08!GO:0008135;translation factor activity, nucleic acid binding;2.56920140514137e-08!GO:0003714;transcription corepressor activity;2.8331426728732e-08!GO:0031965;nuclear membrane;3.26626982253239e-08!GO:0032553;ribonucleotide binding;3.76785130285478e-08!GO:0032555;purine ribonucleotide binding;3.76785130285478e-08!GO:0008219;cell death;4.49763675444698e-08!GO:0016265;death;4.49763675444698e-08!GO:0016469;proton-transporting two-sector ATPase complex;4.53551534609523e-08!GO:0009060;aerobic respiration;4.53551534609523e-08!GO:0016563;transcription activator activity;4.58658793071674e-08!GO:0006323;DNA packaging;4.75469591560301e-08!GO:0000502;proteasome complex (sensu Eukaryota);5.19715079502216e-08!GO:0017076;purine nucleotide binding;5.28592596945823e-08!GO:0008639;small protein conjugating enzyme activity;6.23553661983914e-08!GO:0004842;ubiquitin-protein ligase activity;6.59704300148358e-08!GO:0019829;cation-transporting ATPase activity;6.9610633791216e-08!GO:0031252;leading edge;1.75757525119053e-07!GO:0015078;hydrogen ion transmembrane transporter activity;1.89183971907311e-07!GO:0031324;negative regulation of cellular metabolic process;1.89183971907311e-07!GO:0006082;organic acid metabolic process;1.95623253486087e-07!GO:0009892;negative regulation of metabolic process;1.96636925826054e-07!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.15301490604972e-07!GO:0000323;lytic vacuole;2.62781564091355e-07!GO:0005764;lysosome;2.62781564091355e-07!GO:0019787;small conjugating protein ligase activity;2.69956917222391e-07!GO:0017038;protein import;2.79661915304502e-07!GO:0006754;ATP biosynthetic process;3.63889125993147e-07!GO:0006753;nucleoside phosphate metabolic process;3.63889125993147e-07!GO:0019752;carboxylic acid metabolic process;3.63889125993147e-07!GO:0006099;tricarboxylic acid cycle;3.86554877784488e-07!GO:0046356;acetyl-CoA catabolic process;3.86554877784488e-07!GO:0006446;regulation of translational initiation;4.66069555892686e-07!GO:0007264;small GTPase mediated signal transduction;5.40069985472261e-07!GO:0005789;endoplasmic reticulum membrane;5.93044007452821e-07!GO:0016310;phosphorylation;5.95933844241793e-07!GO:0005730;nucleolus;6.57986101115351e-07!GO:0016481;negative regulation of transcription;6.652981320893e-07!GO:0042175;nuclear envelope-endoplasmic reticulum network;6.66022618004446e-07!GO:0043069;negative regulation of programmed cell death;7.40265522333643e-07!GO:0006357;regulation of transcription from RNA polymerase II promoter;7.4599818317613e-07!GO:0051187;cofactor catabolic process;8.79275641035771e-07!GO:0048475;coated membrane;8.82030301853862e-07!GO:0030117;membrane coat;8.82030301853862e-07!GO:0009109;coenzyme catabolic process;1.01558275569493e-06!GO:0043066;negative regulation of apoptosis;1.07314428482645e-06!GO:0015980;energy derivation by oxidation of organic compounds;1.35563043599289e-06!GO:0006084;acetyl-CoA metabolic process;1.4688444715901e-06!GO:0046034;ATP metabolic process;1.4706038578062e-06!GO:0005761;mitochondrial ribosome;1.4706038578062e-06!GO:0000313;organellar ribosome;1.4706038578062e-06!GO:0051246;regulation of protein metabolic process;1.5331366327792e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.58433220074112e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.58433220074112e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.79509430749251e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.79509430749251e-06!GO:0006752;group transfer coenzyme metabolic process;1.84816166316525e-06!GO:0003743;translation initiation factor activity;1.92625202433933e-06!GO:0006163;purine nucleotide metabolic process;2.065392950288e-06!GO:0009142;nucleoside triphosphate biosynthetic process;2.08897509466463e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.08897509466463e-06!GO:0009150;purine ribonucleotide metabolic process;2.4330250437353e-06!GO:0006897;endocytosis;2.58859177754955e-06!GO:0010324;membrane invagination;2.58859177754955e-06!GO:0051276;chromosome organization and biogenesis;2.72426610303479e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.25953969774865e-06!GO:0009144;purine nucleoside triphosphate metabolic process;3.25953969774865e-06!GO:0006164;purine nucleotide biosynthetic process;3.57494470844212e-06!GO:0006888;ER to Golgi vesicle-mediated transport;3.57494470844212e-06!GO:0005524;ATP binding;3.58025475921917e-06!GO:0032559;adenyl ribonucleotide binding;3.68490940864889e-06!GO:0019899;enzyme binding;3.78278195149733e-06!GO:0051188;cofactor biosynthetic process;3.92004537606815e-06!GO:0009152;purine ribonucleotide biosynthetic process;3.98336179217626e-06!GO:0009199;ribonucleoside triphosphate metabolic process;4.03181394408465e-06!GO:0009259;ribonucleotide metabolic process;4.06642996577969e-06!GO:0003713;transcription coactivator activity;4.18024940923968e-06!GO:0016881;acid-amino acid ligase activity;5.0364947438534e-06!GO:0044440;endosomal part;5.07253011285127e-06!GO:0010008;endosome membrane;5.07253011285127e-06!GO:0009141;nucleoside triphosphate metabolic process;5.8872131314843e-06!GO:0044453;nuclear membrane part;5.92671573964157e-06!GO:0030554;adenyl nucleotide binding;6.05081261579663e-06!GO:0016568;chromatin modification;6.27131272479899e-06!GO:0006413;translational initiation;6.97371696932074e-06!GO:0030120;vesicle coat;7.17130661136416e-06!GO:0030662;coated vesicle membrane;7.17130661136416e-06!GO:0006606;protein import into nucleus;8.73836290546804e-06!GO:0006333;chromatin assembly or disassembly;1.02256316152076e-05!GO:0042802;identical protein binding;1.03779414557295e-05!GO:0009260;ribonucleotide biosynthetic process;1.10436561905841e-05!GO:0051170;nuclear import;1.33844569091323e-05!GO:0006916;anti-apoptosis;1.44691475113531e-05!GO:0016491;oxidoreductase activity;1.49299005514907e-05!GO:0003779;actin binding;1.64772323803124e-05!GO:0045893;positive regulation of transcription, DNA-dependent;1.64772323803124e-05!GO:0005083;small GTPase regulator activity;1.73896763105259e-05!GO:0044431;Golgi apparatus part;1.75071130380163e-05!GO:0007010;cytoskeleton organization and biogenesis;1.79323855587843e-05!GO:0005905;coated pit;2.12473399627875e-05!GO:0005643;nuclear pore;2.35011984112876e-05!GO:0048471;perinuclear region of cytoplasm;2.46314213584147e-05!GO:0001666;response to hypoxia;2.52505480270355e-05!GO:0042623;ATPase activity, coupled;2.8199082067922e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.98240223039894e-05!GO:0044262;cellular carbohydrate metabolic process;2.98240223039894e-05!GO:0016740;transferase activity;2.99041601794178e-05!GO:0045892;negative regulation of transcription, DNA-dependent;3.38154322555549e-05!GO:0051427;hormone receptor binding;4.11337639591571e-05!GO:0045259;proton-transporting ATP synthase complex;4.13974663130994e-05!GO:0050657;nucleic acid transport;4.13974663130994e-05!GO:0051236;establishment of RNA localization;4.13974663130994e-05!GO:0050658;RNA transport;4.13974663130994e-05!GO:0006403;RNA localization;4.34343691021522e-05!GO:0007265;Ras protein signal transduction;4.40226552195221e-05!GO:0042981;regulation of apoptosis;4.75228010671132e-05!GO:0016887;ATPase activity;5.0378941641413e-05!GO:0065004;protein-DNA complex assembly;5.19216261854693e-05!GO:0009108;coenzyme biosynthetic process;5.85794288318923e-05!GO:0008361;regulation of cell size;6.37166907200102e-05!GO:0005770;late endosome;6.38610511376248e-05!GO:0006091;generation of precursor metabolites and energy;6.38610511376248e-05!GO:0032446;protein modification by small protein conjugation;6.46998091536015e-05!GO:0043067;regulation of programmed cell death;6.62356376378397e-05!GO:0016049;cell growth;6.66763098585652e-05!GO:0035257;nuclear hormone receptor binding;7.73860478350651e-05!GO:0007049;cell cycle;7.84141359227674e-05!GO:0019222;regulation of metabolic process;8.1994070805303e-05!GO:0045941;positive regulation of transcription;8.86471466820967e-05!GO:0016567;protein ubiquitination;9.35957010558613e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;9.44648005521811e-05!GO:0000785;chromatin;9.52307150471785e-05!GO:0005774;vacuolar membrane;9.98437505459997e-05!GO:0043566;structure-specific DNA binding;0.000103540796515518!GO:0001558;regulation of cell growth;0.000109794639386837!GO:0007243;protein kinase cascade;0.000124043035210087!GO:0000151;ubiquitin ligase complex;0.000142192535122483!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000145258502026477!GO:0045786;negative regulation of progression through cell cycle;0.000148702154342817!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000161553341813819!GO:0030695;GTPase regulator activity;0.000169861475927907!GO:0003924;GTPase activity;0.000184354429056493!GO:0065002;intracellular protein transport across a membrane;0.00019537794903704!GO:0009966;regulation of signal transduction;0.000201752259452806!GO:0008286;insulin receptor signaling pathway;0.000204824052389425!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000211800463741674!GO:0030532;small nuclear ribonucleoprotein complex;0.000235879734115323!GO:0006613;cotranslational protein targeting to membrane;0.00023728272029541!GO:0051789;response to protein stimulus;0.000241145631873948!GO:0006986;response to unfolded protein;0.000241145631873948!GO:0005788;endoplasmic reticulum lumen;0.000243630123289006!GO:0030867;rough endoplasmic reticulum membrane;0.000245189344157796!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000254867609315787!GO:0044255;cellular lipid metabolic process;0.000257500312274529!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000274269188695151!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.000277429346495336!GO:0046930;pore complex;0.000280215460469797!GO:0008654;phospholipid biosynthetic process;0.000280718756559066!GO:0005798;Golgi-associated vesicle;0.000302371729113051!GO:0048522;positive regulation of cellular process;0.000348608353833835!GO:0004386;helicase activity;0.000349147590008113!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000384352980081261!GO:0006334;nucleosome assembly;0.000402915493111152!GO:0008154;actin polymerization and/or depolymerization;0.000420428813449298!GO:0005525;GTP binding;0.000421899493534107!GO:0005996;monosaccharide metabolic process;0.000446201601927627!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.000446201601927627!GO:0004812;aminoacyl-tRNA ligase activity;0.000446201601927627!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.000446201601927627!GO:0019318;hexose metabolic process;0.000475365847367582!GO:0000245;spliceosome assembly;0.000489751984945897!GO:0007167;enzyme linked receptor protein signaling pathway;0.000507665737201872!GO:0030027;lamellipodium;0.000513655326754385!GO:0051028;mRNA transport;0.000516593946705881!GO:0005923;tight junction;0.000519920660281898!GO:0030118;clathrin coat;0.000546981362661933!GO:0051128;regulation of cellular component organization and biogenesis;0.000562761392111731!GO:0000139;Golgi membrane;0.000565545112355349!GO:0008026;ATP-dependent helicase activity;0.000565545112355349!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000569848670275618!GO:0005791;rough endoplasmic reticulum;0.000577020022477125!GO:0022890;inorganic cation transmembrane transporter activity;0.00059258927834536!GO:0003697;single-stranded DNA binding;0.00059340006623644!GO:0016327;apicolateral plasma membrane;0.000638136298940691!GO:0007266;Rho protein signal transduction;0.000646861005319186!GO:0043296;apical junction complex;0.000665154751545345!GO:0031497;chromatin assembly;0.000669620183530706!GO:0044437;vacuolar part;0.000672707659535642!GO:0030133;transport vesicle;0.000682098021320061!GO:0008250;oligosaccharyl transferase complex;0.000699902512487005!GO:0035258;steroid hormone receptor binding;0.000777111670081025!GO:0000096;sulfur amino acid metabolic process;0.000792662534733219!GO:0043038;amino acid activation;0.000800394542046142!GO:0006418;tRNA aminoacylation for protein translation;0.000800394542046142!GO:0043039;tRNA aminoacylation;0.000800394542046142!GO:0030100;regulation of endocytosis;0.000833071159554482!GO:0033116;ER-Golgi intermediate compartment membrane;0.000877151214617978!GO:0005667;transcription factor complex;0.000924715504386784!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000925395842387655!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000990819331031959!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.000998772586551086!GO:0003724;RNA helicase activity;0.00101201543244168!GO:0051287;NAD binding;0.0010234739085555!GO:0051726;regulation of cell cycle;0.00106179764115769!GO:0005938;cell cortex;0.00106179764115769!GO:0043623;cellular protein complex assembly;0.00108844536363444!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00114375885863229!GO:0004177;aminopeptidase activity;0.00126457128690348!GO:0000074;regulation of progression through cell cycle;0.00135028741820798!GO:0040008;regulation of growth;0.00143441563708518!GO:0048518;positive regulation of biological process;0.00146776657842977!GO:0006066;alcohol metabolic process;0.00152075593521173!GO:0001726;ruffle;0.0015585021490566!GO:0006629;lipid metabolic process;0.00156967881477319!GO:0006950;response to stress;0.00157527823769404!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.00163421164845731!GO:0009117;nucleotide metabolic process;0.00166934758678353!GO:0006402;mRNA catabolic process;0.00168110362956848!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00169713839224194!GO:0051920;peroxiredoxin activity;0.00173273722692286!GO:0004576;oligosaccharyl transferase activity;0.00185193471567636!GO:0005839;proteasome core complex (sensu Eukaryota);0.0019209927657863!GO:0050662;coenzyme binding;0.00193338198815781!GO:0005769;early endosome;0.00195717454457029!GO:0007005;mitochondrion organization and biogenesis;0.0019630530062536!GO:0030521;androgen receptor signaling pathway;0.00205812325207585!GO:0003702;RNA polymerase II transcription factor activity;0.00214873581302445!GO:0051270;regulation of cell motility;0.0022078510215178!GO:0032561;guanyl ribonucleotide binding;0.00222794499361403!GO:0019001;guanyl nucleotide binding;0.00222794499361403!GO:0007169;transmembrane receptor protein tyrosine kinase signaling pathway;0.00224560774255398!GO:0051168;nuclear export;0.00229320336240118!GO:0048037;cofactor binding;0.00239689923253296!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00245817486303051!GO:0008610;lipid biosynthetic process;0.00259009535409537!GO:0007242;intracellular signaling cascade;0.00262589345176415!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00264045934506909!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00264045934506909!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00264045934506909!GO:0005741;mitochondrial outer membrane;0.00275820285613374!GO:0016791;phosphoric monoester hydrolase activity;0.00275820285613374!GO:0019843;rRNA binding;0.00276931990103338!GO:0030134;ER to Golgi transport vesicle;0.0028493426826881!GO:0051179;localization;0.00292020714787744!GO:0015992;proton transport;0.00293594962895042!GO:0006818;hydrogen transport;0.00322111747955867!GO:0006979;response to oxidative stress;0.00327042486035405!GO:0033673;negative regulation of kinase activity;0.00329787111780406!GO:0006469;negative regulation of protein kinase activity;0.00329787111780406!GO:0015630;microtubule cytoskeleton;0.00342902314737332!GO:0016853;isomerase activity;0.00345718338472756!GO:0006612;protein targeting to membrane;0.00353962851722558!GO:0006807;nitrogen compound metabolic process;0.00360977087510988!GO:0006006;glucose metabolic process;0.0038240569094461!GO:0006643;membrane lipid metabolic process;0.00408858439168969!GO:0006595;polyamine metabolic process;0.00427988531856127!GO:0065009;regulation of a molecular function;0.00451344817323026!GO:0006520;amino acid metabolic process;0.0045195739012081!GO:0015629;actin cytoskeleton;0.00466014856859119!GO:0048468;cell development;0.00466014856859119!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0047447591005307!GO:0008186;RNA-dependent ATPase activity;0.00492663500077204!GO:0032787;monocarboxylic acid metabolic process;0.00511442766464108!GO:0043488;regulation of mRNA stability;0.00523956305480246!GO:0043487;regulation of RNA stability;0.00523956305480246!GO:0030131;clathrin adaptor complex;0.00523956305480246!GO:0051056;regulation of small GTPase mediated signal transduction;0.00530464192703229!GO:0008047;enzyme activator activity;0.00538739117300831!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00545077654956196!GO:0030119;AP-type membrane coat adaptor complex;0.00550211084978828!GO:0042254;ribosome biogenesis and assembly;0.0056539709416842!GO:0006650;glycerophospholipid metabolic process;0.00565481256770288!GO:0005096;GTPase activator activity;0.00574902789224206!GO:0030518;steroid hormone receptor signaling pathway;0.00579687393614055!GO:0046467;membrane lipid biosynthetic process;0.00582399299577456!GO:0043021;ribonucleoprotein binding;0.00599227105564913!GO:0030127;COPII vesicle coat;0.00619803595200696!GO:0012507;ER to Golgi transport vesicle membrane;0.00619803595200696!GO:0006891;intra-Golgi vesicle-mediated transport;0.00621379036567308!GO:0031968;organelle outer membrane;0.00622731282169536!GO:0003729;mRNA binding;0.00633818160560764!GO:0040011;locomotion;0.00649947305432991!GO:0022402;cell cycle process;0.00666561234897247!GO:0003690;double-stranded DNA binding;0.00666561234897247!GO:0004300;enoyl-CoA hydratase activity;0.00669864366853288!GO:0004298;threonine endopeptidase activity;0.00681967173161779!GO:0051348;negative regulation of transferase activity;0.00681967173161779!GO:0046983;protein dimerization activity;0.00703754970715494!GO:0016787;hydrolase activity;0.00703853470014687!GO:0030659;cytoplasmic vesicle membrane;0.00709564146129467!GO:0016126;sterol biosynthetic process;0.00726600457850607!GO:0018196;peptidyl-asparagine modification;0.00729368474018932!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00729368474018932!GO:0006519;amino acid and derivative metabolic process;0.00732480974340408!GO:0043407;negative regulation of MAP kinase activity;0.00733748168050294!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.00752952770769943!GO:0033043;regulation of organelle organization and biogenesis;0.00752952770769943!GO:0005099;Ras GTPase activator activity;0.00755816817346938!GO:0008064;regulation of actin polymerization and/or depolymerization;0.00767254428763727!GO:0040012;regulation of locomotion;0.00782581245956161!GO:0000902;cell morphogenesis;0.00785419541075695!GO:0032989;cellular structure morphogenesis;0.00785419541075695!GO:0006695;cholesterol biosynthetic process;0.00790290854727662!GO:0031323;regulation of cellular metabolic process;0.00790290854727662!GO:0005975;carbohydrate metabolic process;0.0079606938140521!GO:0019867;outer membrane;0.00797830149546561!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00804046076814594!GO:0009308;amine metabolic process;0.00804046076814594!GO:0016197;endosome transport;0.00811282783044212!GO:0045454;cell redox homeostasis;0.00819936294600268!GO:0005765;lysosomal membrane;0.00821064116008478!GO:0005048;signal sequence binding;0.00838135254033171!GO:0017166;vinculin binding;0.00861152822039071!GO:0030041;actin filament polymerization;0.00873362634444663!GO:0051252;regulation of RNA metabolic process;0.00888632168747711!GO:0031902;late endosome membrane;0.00892270029538876!GO:0009719;response to endogenous stimulus;0.00895035365067406!GO:0030658;transport vesicle membrane;0.0092339909442413!GO:0012506;vesicle membrane;0.00925681358189779!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.009547247961449!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0096190443653875!GO:0015399;primary active transmembrane transporter activity;0.0096190443653875!GO:0009081;branched chain family amino acid metabolic process;0.00966786122031808!GO:0044433;cytoplasmic vesicle part;0.0101489608756621!GO:0016311;dephosphorylation;0.0101558963360922!GO:0005885;Arp2/3 protein complex;0.0105541363544529!GO:0032535;regulation of cellular component size;0.010563483574631!GO:0019904;protein domain specific binding;0.0106802126551483!GO:0048487;beta-tubulin binding;0.0109109387111836!GO:0045792;negative regulation of cell size;0.0109466044406186!GO:0030832;regulation of actin filament length;0.0114882592868066!GO:0046578;regulation of Ras protein signal transduction;0.0115736140254807!GO:0001944;vasculature development;0.0117199201423225!GO:0016301;kinase activity;0.0118020370814117!GO:0004680;casein kinase activity;0.0120905722252675!GO:0051087;chaperone binding;0.0121035430315465!GO:0000097;sulfur amino acid biosynthetic process;0.0122009447855748!GO:0001568;blood vessel development;0.012315918012517!GO:0005852;eukaryotic translation initiation factor 3 complex;0.012402727838405!GO:0004004;ATP-dependent RNA helicase activity;0.0124570555778704!GO:0006974;response to DNA damage stimulus;0.0129508755976296!GO:0044275;cellular carbohydrate catabolic process;0.0131171251795462!GO:0005762;mitochondrial large ribosomal subunit;0.0135585804790503!GO:0000315;organellar large ribosomal subunit;0.0135585804790503!GO:0006509;membrane protein ectodomain proteolysis;0.0136047496484565!GO:0033619;membrane protein proteolysis;0.0136047496484565!GO:0006672;ceramide metabolic process;0.0140065228461301!GO:0046483;heterocycle metabolic process;0.0141108512513777!GO:0006635;fatty acid beta-oxidation;0.0144644554962869!GO:0006790;sulfur metabolic process;0.0146611594411452!GO:0004364;glutathione transferase activity;0.0147451467446372!GO:0016859;cis-trans isomerase activity;0.0151937089361203!GO:0050681;androgen receptor binding;0.0152175563486801!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0153356456553967!GO:0006401;RNA catabolic process;0.0155159390469246!GO:0016903;oxidoreductase activity, acting on the aldehyde or oxo group of donors;0.0158401009675922!GO:0016363;nuclear matrix;0.0158401009675922!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0158980033545719!GO:0030308;negative regulation of cell growth;0.016044100054692!GO:0050811;GABA receptor binding;0.0162306253156322!GO:0051101;regulation of DNA binding;0.0162860616318767!GO:0046474;glycerophospholipid biosynthetic process;0.0168010126039727!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0179918491460567!GO:0009066;aspartate family amino acid metabolic process;0.0180654350098383!GO:0043492;ATPase activity, coupled to movement of substances;0.0182702700668642!GO:0030132;clathrin coat of coated pit;0.0185793292778089!GO:0044420;extracellular matrix part;0.0194960620682582!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0196149807913279!GO:0006007;glucose catabolic process;0.0196416875470962!GO:0007588;excretion;0.0196416875470962!GO:0005815;microtubule organizing center;0.019754818889155!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.019827621380492!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0198973304089482!GO:0016584;nucleosome positioning;0.0201694953815332!GO:0033176;proton-transporting V-type ATPase complex;0.0204530380289829!GO:0016471;vacuolar proton-transporting V-type ATPase complex;0.0204530380289829!GO:0046519;sphingoid metabolic process;0.0209006384511707!GO:0008139;nuclear localization sequence binding;0.0211956772803783!GO:0030663;COPI coated vesicle membrane;0.0212886362497394!GO:0030126;COPI vesicle coat;0.0212886362497394!GO:0006644;phospholipid metabolic process;0.0213666200307875!GO:0019199;transmembrane receptor protein kinase activity;0.0215507664657449!GO:0004185;serine carboxypeptidase activity;0.0215507664657449!GO:0006839;mitochondrial transport;0.0215781076913337!GO:0030031;cell projection biogenesis;0.0216272929576942!GO:0051049;regulation of transport;0.0220507559828016!GO:0006555;methionine metabolic process;0.0221427346582514!GO:0005100;Rho GTPase activator activity;0.0222924597933572!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0223961977869085!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0231846243598242!GO:0006350;transcription;0.0232282269041431!GO:0006607;NLS-bearing substrate import into nucleus;0.0238491721103328!GO:0000059;protein import into nucleus, docking;0.0238491721103328!GO:0016408;C-acyltransferase activity;0.0239395787809575!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.024940399031096!GO:0009893;positive regulation of metabolic process;0.0253089144558058!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0253630650313607!GO:0030660;Golgi-associated vesicle membrane;0.0256266319553185!GO:0007569;cell aging;0.0256342918923161!GO:0032594;protein transport within lipid bilayer;0.025822000082401!GO:0032907;transforming growth factor-beta3 production;0.025822000082401!GO:0032596;protein transport into lipid raft;0.025822000082401!GO:0032910;regulation of transforming growth factor-beta3 production;0.025822000082401!GO:0032595;B cell receptor transport within lipid bilayer;0.025822000082401!GO:0033606;chemokine receptor transport within lipid bilayer;0.025822000082401!GO:0032600;chemokine receptor transport out of lipid raft;0.025822000082401!GO:0032599;protein transport out of lipid raft;0.025822000082401!GO:0032597;B cell receptor transport into lipid raft;0.025822000082401!GO:0032913;negative regulation of transforming growth factor-beta3 production;0.025822000082401!GO:0006810;transport;0.0258419438893756!GO:0007040;lysosome organization and biogenesis;0.0261789781250757!GO:0006984;ER-nuclear signaling pathway;0.0266133934555017!GO:0045045;secretory pathway;0.0269259180599871!GO:0043681;protein import into mitochondrion;0.0269280572217116!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0269285454465037!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0271424944540266!GO:0006399;tRNA metabolic process;0.027160038234977!GO:0009165;nucleotide biosynthetic process;0.0272067660689785!GO:0030522;intracellular receptor-mediated signaling pathway;0.0277689144977258!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0278268385579573!GO:0043086;negative regulation of catalytic activity;0.0286394597736353!GO:0019395;fatty acid oxidation;0.028747244034848!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0292535001986637!GO:0019902;phosphatase binding;0.0299871748340916!GO:0005581;collagen;0.0300676223495175!GO:0004721;phosphoprotein phosphatase activity;0.0301531249993252!GO:0044427;chromosomal part;0.0301531249993252!GO:0043087;regulation of GTPase activity;0.0307161119589204!GO:0048500;signal recognition particle;0.0313425872677474!GO:0051674;localization of cell;0.0313425872677474!GO:0006928;cell motility;0.0313425872677474!GO:0008147;structural constituent of bone;0.031356478178492!GO:0006611;protein export from nucleus;0.0314502447394846!GO:0008629;induction of apoptosis by intracellular signals;0.0315296019843717!GO:0006631;fatty acid metabolic process;0.0319903250414894!GO:0046164;alcohol catabolic process;0.0321976411448224!GO:0006693;prostaglandin metabolic process;0.0326798967620311!GO:0006692;prostanoid metabolic process;0.0326798967620311!GO:0005869;dynactin complex;0.0326798967620311!GO:0008097;5S rRNA binding;0.032700912604677!GO:0010468;regulation of gene expression;0.0327583209528168!GO:0046365;monosaccharide catabolic process;0.0330232004145359!GO:0003746;translation elongation factor activity;0.0338325927592541!GO:0008287;protein serine/threonine phosphatase complex;0.0338624016298426!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0339555840502235!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0339555840502235!GO:0031529;ruffle organization and biogenesis;0.0344881660026155!GO:0030384;phosphoinositide metabolic process;0.0344959453385515!GO:0000314;organellar small ribosomal subunit;0.0348561071638412!GO:0005763;mitochondrial small ribosomal subunit;0.0348561071638412!GO:0035035;histone acetyltransferase binding;0.0349403785880208!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0350525164313491!GO:0001725;stress fiber;0.0354096887257914!GO:0032432;actin filament bundle;0.0354096887257914!GO:0031901;early endosome membrane;0.0364158288358436!GO:0007033;vacuole organization and biogenesis;0.0367821764721643!GO:0005813;centrosome;0.0380329002728646!GO:0051017;actin filament bundle formation;0.0380329002728646!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0380329002728646!GO:0055083;monovalent inorganic anion homeostasis;0.0380329002728646!GO:0055064;chloride ion homeostasis;0.0380329002728646!GO:0030644;cellular chloride ion homeostasis;0.0380329002728646!GO:0006892;post-Golgi vesicle-mediated transport;0.038044445153518!GO:0006338;chromatin remodeling;0.0390411486829653!GO:0051235;maintenance of localization;0.0411121508108567!GO:0005637;nuclear inner membrane;0.041329896831068!GO:0033130;acetylcholine receptor binding;0.0413475674143524!GO:0019320;hexose catabolic process;0.0415117937737635!GO:0005694;chromosome;0.0416228168930668!GO:0051539;4 iron, 4 sulfur cluster binding;0.0419877802392709!GO:0001516;prostaglandin biosynthetic process;0.042040316705999!GO:0046457;prostanoid biosynthetic process;0.042040316705999!GO:0015631;tubulin binding;0.0422861489999822!GO:0030137;COPI-coated vesicle;0.0424700969910299!GO:0008652;amino acid biosynthetic process;0.0426205927467347!GO:0004195;renin activity;0.0433826429980276!GO:0000118;histone deacetylase complex;0.0434570570167443!GO:0005684;U2-dependent spliceosome;0.0434685910099256!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0434685910099256!GO:0045446;endothelial cell differentiation;0.0439481893365022!GO:0051336;regulation of hydrolase activity;0.0441221058543247!GO:0000786;nucleosome;0.0446468851466818!GO:0022415;viral reproductive process;0.0446673492765631!GO:0006414;translational elongation;0.0449572583721497!GO:0009083;branched chain family amino acid catabolic process;0.0450292074057438!GO:0009956;radial pattern formation;0.045227877587084!GO:0007015;actin filament organization;0.0453648818193054!GO:0001525;angiogenesis;0.045497669153306!GO:0006364;rRNA processing;0.0456210174985408!GO:0030145;manganese ion binding;0.0458317262196266!GO:0005832;chaperonin-containing T-complex;0.0458317262196266!GO:0046822;regulation of nucleocytoplasmic transport;0.0465471801956227!GO:0030139;endocytic vesicle;0.0469539392951954!GO:0031272;regulation of pseudopodium formation;0.0475383165033897!GO:0031269;pseudopodium formation;0.0475383165033897!GO:0031344;regulation of cell projection organization and biogenesis;0.0475383165033897!GO:0031268;pseudopodium organization and biogenesis;0.0475383165033897!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0475383165033897!GO:0031274;positive regulation of pseudopodium formation;0.0475383165033897!GO:0031628;opioid receptor binding;0.0480120057300075!GO:0031852;mu-type opioid receptor binding;0.0480120057300075!GO:0051234;establishment of localization;0.0480178344046105!GO:0006260;DNA replication;0.0485744846213911!GO:0051604;protein maturation;0.0492083544369419!GO:0006665;sphingolipid metabolic process;0.0492347141366445!GO:0008354;germ cell migration;0.0495361124352566!GO:0031072;heat shock protein binding;0.0495946134529893
|sample_id=10045
|sample_note=
|sample_sex=mixed
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=kidney
|top_motifs=HNF1A:5.10119208143;SP1:3.01633342208;HNF4A_NR2F1,2:2.77052937934;MAZ:2.74338171259;TFCP2:2.26006426565;NKX2-3_NKX2-5:2.2352527381;PATZ1:2.17745681963;ADNP_IRX_SIX_ZHX:2.11186646255;MED-1{core}:2.06347690795;MZF1:2.04041667879;XCPE1{core}:1.98876644077;HIC1:1.95876607594;TFAP2{A,C}:1.92969345467;EP300:1.89872591837;PBX1:1.83264890166;HOX{A6,A7,B6,B7}:1.81613252205;TBP:1.79235762797;PAX5:1.73501918144;FOX{D1,D2}:1.68051892138;GTF2I:1.64744895721;TFAP2B:1.6094418305;RREB1:1.60085402349;FOXQ1:1.58441098776;RXRA_VDR{dimer}:1.52888632725;HBP1_HMGB_SSRP1_UBTF:1.50650435666;SNAI1..3:1.48022078381;VSX1,2:1.46510922243;SOX5:1.41584294711;GFI1:1.38578160153;EGR1..3:1.34335846127;TLX1..3_NFIC{dimer}:1.28690185623;SREBF1,2:1.28570704777;GTF2A1,2:1.25095750689;TEAD1:1.21688465523;ZEB1:1.21134361916;RBPJ:1.21004580934;PAX6:1.20021417208;STAT1,3:1.18855868251;T:1.17584069808;MTF1:1.14707312041;NKX3-2:1.1256283234;SPZ1:1.08615536545;GFI1B:1.06537211922;MTE{core}:1.06287674804;ZFP161:1.05017946383;SMAD1..7,9:1.04802874941;ESR1:1.02571689319;ESRRA:1.02323078333;PRRX1,2:1.00932917444;NANOG{mouse}:0.964746846694;IKZF1:0.949065922805;NFATC1..3:0.904759588003;PRDM1:0.889322582922;TGIF1:0.887131406638;NR5A1,2:0.861268158217;POU2F1..3:0.84530119505;FOX{I1,J2}:0.829874316567;ATF2:0.811702665688;SOX2:0.751512869225;ZIC1..3:0.746728625562;GCM1,2:0.744271627301;SOX{8,9,10}:0.74164394033;LMO2:0.735689873657;MYBL2:0.719404755182;BREu{core}:0.719045298012;MYOD1:0.684953680821;RFX1:0.683067413119;EBF1:0.673100957341;RXR{A,B,G}:0.668860364173;HIF1A:0.64763795616;GZF1:0.638363173382;FOXO1,3,4:0.608603174803;AR:0.599060217115;MYFfamily:0.595474434347;LEF1_TCF7_TCF7L1,2:0.541205227002;NFY{A,B,C}:0.506477898141;HAND1,2:0.478611514629;POU6F1:0.473398508538;NR6A1:0.465561566774;NKX2-1,4:0.443934062632;SRF:0.438329353978;ZNF143:0.426036727665;ZNF423:0.421117203935;DBP:0.414655871405;TLX2:0.407855973347;ZNF148:0.395025242813;JUN:0.350918980986;BPTF:0.350563009671;FOXD3:0.341769779254;IRF7:0.324172994361;PAX1,9:0.322079755805;MEF2{A,B,C,D}:0.304933928125;GATA6:0.290186710927;NHLH1,2:0.26254814669;ATF4:0.222073890893;ZNF238:0.216097480891;FOXN1:0.21336003464;TFAP4:0.204364263619;CUX2:0.193690849739;GLI1..3:0.162936494123;NRF1:0.154406590811;bHLH_family:0.14775571582;ALX1:0.144696254605;LHX3,4:0.14315390529;ETS1,2:0.125839819769;POU5F1:0.123921796496;PDX1:0.118834970535;FOXM1:0.102122723661;TBX4,5:0.0641346952731;KLF4:0.0297126064201;NANOG:0.0219152310076;REST:-0.0275130232703;ATF6:-0.0548523399846;STAT2,4,6:-0.056228271023;XBP1:-0.0909282671231;ZBTB6:-0.0966293939722;SPIB:-0.129625103499;PAX2:-0.132072678297;RFX2..5_RFXANK_RFXAP:-0.15632340881;CREB1:-0.167348483386;TP53:-0.167885786197;PITX1..3:-0.174875733056;MAFB:-0.175262499121;SPI1:-0.200243651615;ONECUT1,2:-0.20217687935;SOX17:-0.22282909647;RORA:-0.224737151071;EN1,2:-0.228016299981;FOXL1:-0.231064757803;CDC5L:-0.240630719932;TOPORS:-0.24171607191;IRF1,2:-0.273162245486;POU3F1..4:-0.283509667356;NFKB1_REL_RELA:-0.291715308023;ZNF384:-0.310529156865;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.313547905103;HLF:-0.332006614814;FOXP3:-0.33795116085;PPARG:-0.375146947099;HSF1,2:-0.389055312594;TAL1_TCF{3,4,12}:-0.396151863819;ELF1,2,4:-0.396201456865;HOX{A5,B5}:-0.397467683795;NFE2:-0.410638693698;ATF5_CREB3:-0.430415283375;E2F1..5:-0.439634398945;NFIX:-0.462754692922;NFE2L2:-0.474985931945;TFDP1:-0.489532234322;FOXP1:-0.495449826937;HMX1:-0.497724658408;IKZF2:-0.516128237684;FOXA2:-0.532438847285;STAT5{A,B}:-0.573176842354;HOXA9_MEIS1:-0.59363052723;BACH2:-0.616793388243;CEBPA,B_DDIT3:-0.626777705445;NR3C1:-0.640203654633;ELK1,4_GABP{A,B1}:-0.668536631327;FOS_FOS{B,L1}_JUN{B,D}:-0.671807462968;AHR_ARNT_ARNT2:-0.674277191977;FOSL2:-0.683283045415;OCT4_SOX2{dimer}:-0.712916757891;YY1:-0.757209915374;RUNX1..3:-0.791573506278;NFIL3:-0.802208294813;FOX{F1,F2,J1}:-0.80699317205;NR1H4:-0.816809216728;NKX6-1,2:-0.846442899695;PAX8:-0.883997080522;ARID5B:-0.960284178742;ALX4:-1.02688685397;HES1:-1.03483776648;DMAP1_NCOR{1,2}_SMARC:-1.05758966615;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.0693214433;POU1F1:-1.10338330477;UFEwm:-1.12490558516;PAX3,7:-1.14388153911;GATA4:-1.16361267248;NKX3-1:-1.23239850623;CRX:-1.24766983545;MYB:-1.25538092057;HMGA1,2:-1.30632012177;AIRE:-1.40450764953;HOX{A4,D4}:-1.47085897831;TEF:-1.52826349902;ZBTB16:-1.9044410152;PAX4:-1.93886941399;EVI1:-1.98612799334;CDX1,2,4:-2.04130461455;NFE2L1:-2.14821155424;NKX2-2,8:-2.59260135559
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10045-101F9;search_select_hide=table117:FF:10045-101F9
}}
}}

Latest revision as of 12:17, 3 June 2020

Name:kidney, fetal, pool1
Species:Human (Homo sapiens)
Library ID:CNhs10652
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuekidney
dev stage12-31 weeks fetus
sexmixed
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyClontech
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number8082007A
catalog numberCat:636584
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005649
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10652 CAGE DRX008671 DRR009543
Accession ID Hg19

Library idBAMCTSS
CNhs10652 DRZ000968 DRZ002353
Accession ID Hg38

Library idBAMCTSS
CNhs10652 DRZ012318 DRZ013703
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0.0222
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0653
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.169
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0.101
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0.0222
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0.0222
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.363
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.0234
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral1.204224e-4
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0.757
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.364
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.045
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.123
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.0433
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.0212
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140.00633
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0.0222
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.0635
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0358
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0.239
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0.0222
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0.0222
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.115
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.168
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.252
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0.0222
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.0304
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.141
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0433
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.19
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.0222
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.00605
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0712
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0.0433
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.0222
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0.0827
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.0207
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.162
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0222
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.136
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0.0222
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.0827
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.101
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.0222
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0.0222
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0.411
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.0635
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.0827
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0.0222
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10652

Jaspar motifP-value
MA0002.20.00208
MA0003.10.541
MA0004.10.561
MA0006.10.594
MA0007.10.36
MA0009.10.497
MA0014.10.969
MA0017.10.24
MA0018.20.235
MA0019.10.137
MA0024.10.72
MA0025.10.374
MA0027.10.826
MA0028.10.115
MA0029.10.67
MA0030.14.36491e-4
MA0031.10.147
MA0035.20.712
MA0038.10.0046
MA0039.20.252
MA0040.10.177
MA0041.10.142
MA0042.10.346
MA0043.10.546
MA0046.11.17514e-69
MA0047.20.465
MA0048.10.261
MA0050.10.396
MA0051.10.9
MA0052.10.0476
MA0055.10.366
MA0057.10.852
MA0058.10.623
MA0059.10.0186
MA0060.10.00277
MA0061.10.0128
MA0062.20.0342
MA0065.20.0704
MA0066.10.0311
MA0067.10.175
MA0068.19.10801e-6
MA0069.10.329
MA0070.10.298
MA0071.10.286
MA0072.10.368
MA0073.10.716
MA0074.10.738
MA0076.10.293
MA0077.10.623
MA0078.10.0964
MA0079.20.0568
MA0080.20.061
MA0081.10.276
MA0083.10.644
MA0084.10.496
MA0087.10.232
MA0088.10.0747
MA0090.10.0439
MA0091.10.307
MA0092.10.411
MA0093.10.656
MA0099.26.71236e-7
MA0100.10.462
MA0101.10.152
MA0102.20.857
MA0103.10.774
MA0104.20.0303
MA0105.11.65571e-8
MA0106.10.077
MA0107.10.234
MA0108.21.58659e-17
MA0111.10.266
MA0112.20.00349
MA0113.10.799
MA0114.10.898
MA0115.10.847
MA0116.17.59471e-5
MA0117.10.36
MA0119.10.0785
MA0122.10.457
MA0124.10.568
MA0125.10.0679
MA0131.10.936
MA0135.10.0135
MA0136.10.0351
MA0137.20.106
MA0138.20.447
MA0139.10.255
MA0140.10.606
MA0141.10.342
MA0142.10.672
MA0143.10.309
MA0144.10.851
MA0145.10.352
MA0146.10.287
MA0147.10.0109
MA0148.10.691
MA0149.10.0102
MA0150.10.00201
MA0152.10.418
MA0153.11.19775e-41
MA0154.10.00504
MA0155.10.53
MA0156.10.106
MA0157.10.772
MA0159.10.159
MA0160.10.219
MA0162.10.477
MA0163.13.20602e-13
MA0164.10.443
MA0258.10.0164
MA0259.10.24



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10652

Novel motifP-value
10.0087
100.0129
1000.321
1010.446
1020.682
1030.0606
1040.747
1050.738
1060.212
1070.624
1080.517
1090.0164
110.035
1100.0835
1117.41935e-4
1120.147
1130.583
1143.6964e-4
1150.706
1160.303
1170.00817
1180.154
1190.101
120.791
1200.162
1210.924
1220.487
1230.00673
1240.637
1250.00375
1260.875
1270.111
1280.249
1290.901
130.135
1300.146
1310.722
1320.743
1330.899
1340.77
1350.89
1360.945
1370.269
1380.241
1390.0218
140.887
1400.181
1410.0922
1420.451
1430.00181
1440.495
1450.485
1460.612
1470.874
1480.00887
1490.468
150.0514
1500.404
1510.438
1520.945
1530.95
1540.378
1550.28
1560.769
1570.734
1580.435
1590.369
160.137
1600.365
1610.283
1620.691
1630.773
1640.0454
1650.45
1660.842
1670.0142
1680.93
1690.0536
170.23
180.0245
190.697
20.603
200.362
210.159
220.707
230.585
240.73
250.323
260.0172
270.725
280.768
290.0173
30.0501
300.112
310.874
320.122
330.318
340.463
350.0968
360.00828
370.0532
380.539
390.834
40.702
400.258
410.185
420.13
430.115
440.245
450.515
460.0262
470.0567
480.136
490.0676
50.21
500.835
510.543
520.618
530.577
540.684
550.149
560.73
570.182
580.453
590.457
60.348
600.424
610.273
620.132
630.255
640.147
650.454
660.753
670.21
680.431
690.57
70.435
700.00851
710.0146
720.581
730.093
740.202
750.00683
760.0417
770.859
780.243
790.0895
80.0451
800.578
810.117
820.188
830.583
840.563
850.208
860.21
870.185
880.941
890.223
90.944
900.042
910.409
920.246
930.156
940.0208
950.0767
960.12
970.742
980.0962
990.559



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10652


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0002113 (kidney)
0002100 (trunk)
0000479 (tissue)
0000062 (organ)
0000475 (organism subdivision)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0009569 (subdivision of trunk)
0000489 (cavitated compound organ)
0005177 (trunk region element)
0005172 (abdomen element)
0005173 (abdominal segment element)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0000916 (abdomen)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000999 (fetal tissue sample)
0000004 (tissue sample)
0010045 (human kidney - fetal sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0003104 (mesenchyme)
UBERON:0003918 (kidney mesenchyme)
UBERON:0007687 (kidney field)

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