FF:10047-101G2: Difference between revisions

Latest revision as of 12:17, 3 June 2020

Name:	tonsil, adult, pool1
Species:	Human (Homo sapiens)
Library ID:	CNhs10654
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	tonsil
dev stage	22-61 years old adult
sex	mixed
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Clontech
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	9120165A
catalog number	Cat:636587
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004996

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10654		CAGE		DRX008752		DRR009624

Accession ID Hg19

Library id		BAM		CTSS
CNhs10654		DRZ001049		DRZ002434

Accession ID Hg38

Library id		BAM		CTSS
CNhs10654		DRZ012399		DRZ013784

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0.0549
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0742
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.0375
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0283
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0.022
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.00951
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0.0283
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.124
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.0283
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0.0283
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0.0249
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0283
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.0283
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.162
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.182
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0.0799
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.349
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.173
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.303
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.0283
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0.187
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.00251
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0.0283
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0059
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0.126
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0.0283
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	1.906
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0492
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.633
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.0799
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0.0283
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0.147
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.223
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0.0283
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.416
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.0799
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0.575
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.0416
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.0799
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0.0416
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0283
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.039
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.44
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.0283
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.08
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0.0283
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.0549
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.0283
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.0283
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.273
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.0142
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.147
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0.104
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0.0416
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0.0549
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0.0549
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0.418
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.642
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0.45
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0.0283
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0.0283
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0.0549
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0.0283
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0.0283
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0.0283
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0.0283
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0.0283
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0.126
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10654

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00295
MA0003.1	MA0003.1	0.217
MA0004.1	MA0004.1	0.367
MA0006.1	MA0006.1	0.213
MA0007.1	MA0007.1	0.396
MA0009.1	MA0009.1	0.218
MA0014.1	MA0014.1	0.452
MA0017.1	MA0017.1	0.21
MA0018.2	MA0018.2	0.262
MA0019.1	MA0019.1	0.302
MA0024.1	MA0024.1	0.96
MA0025.1	MA0025.1	0.49
MA0027.1	MA0027.1	0.917
MA0028.1	MA0028.1	0.215
MA0029.1	MA0029.1	0.618
MA0030.1	MA0030.1	0.0213
MA0031.1	MA0031.1	0.175
MA0035.2	MA0035.2	0.885
MA0038.1	MA0038.1	0.558
MA0039.2	MA0039.2	0.00284
MA0040.1	MA0040.1	0.522
MA0041.1	MA0041.1	0.0731
MA0042.1	MA0042.1	0.402
MA0043.1	MA0043.1	0.133
MA0046.1	MA0046.1	0.997
MA0047.2	MA0047.2	0.0351
MA0048.1	MA0048.1	8.54712e-4
MA0050.1	MA0050.1	2.13983e-6
MA0051.1	MA0051.1	0.0214
MA0052.1	MA0052.1	1.74234e-8
MA0055.1	MA0055.1	0.0189
MA0057.1	MA0057.1	0.27
MA0058.1	MA0058.1	0.244
MA0059.1	MA0059.1	0.0311
MA0060.1	MA0060.1	0.182
MA0061.1	MA0061.1	0.64
MA0062.2	MA0062.2	0.294
MA0065.2	MA0065.2	0.91
MA0066.1	MA0066.1	0.615
MA0067.1	MA0067.1	0.143
MA0068.1	MA0068.1	0.172
MA0069.1	MA0069.1	0.406
MA0070.1	MA0070.1	0.931
MA0071.1	MA0071.1	0.0412
MA0072.1	MA0072.1	0.571
MA0073.1	MA0073.1	0.914
MA0074.1	MA0074.1	0.39
MA0076.1	MA0076.1	0.831
MA0077.1	MA0077.1	0.768
MA0078.1	MA0078.1	0.313
MA0079.2	MA0079.2	0.0221
MA0080.2	MA0080.2	1.64911e-11
MA0081.1	MA0081.1	0.0675
MA0083.1	MA0083.1	0.186
MA0084.1	MA0084.1	0.664
MA0087.1	MA0087.1	0.147
MA0088.1	MA0088.1	0.209
MA0090.1	MA0090.1	0.283
MA0091.1	MA0091.1	0.532
MA0092.1	MA0092.1	0.946
MA0093.1	MA0093.1	0.39
MA0099.2	MA0099.2	2.90643e-6
MA0100.1	MA0100.1	0.294
MA0101.1	MA0101.1	0.886
MA0102.2	MA0102.2	0.597
MA0103.1	MA0103.1	4.66511e-5
MA0104.2	MA0104.2	0.0466
MA0105.1	MA0105.1	0.0927
MA0106.1	MA0106.1	0.974
MA0107.1	MA0107.1	0.76
MA0108.2	MA0108.2	4.61026e-23
MA0111.1	MA0111.1	0.737
MA0112.2	MA0112.2	0.339
MA0113.1	MA0113.1	0.233
MA0114.1	MA0114.1	0.846
MA0115.1	MA0115.1	0.854
MA0116.1	MA0116.1	0.894
MA0117.1	MA0117.1	0.333
MA0119.1	MA0119.1	0.244
MA0122.1	MA0122.1	0.0763
MA0124.1	MA0124.1	0.378
MA0125.1	MA0125.1	0.747
MA0131.1	MA0131.1	0.391
MA0135.1	MA0135.1	0.0489
MA0136.1	MA0136.1	2.32695e-14
MA0137.2	MA0137.2	0.234
MA0138.2	MA0138.2	0.679
MA0139.1	MA0139.1	0.687
MA0140.1	MA0140.1	0.566
MA0141.1	MA0141.1	0.038
MA0142.1	MA0142.1	0.993
MA0143.1	MA0143.1	0.294
MA0144.1	MA0144.1	0.296
MA0145.1	MA0145.1	0.0177
MA0146.1	MA0146.1	0.176
MA0147.1	MA0147.1	0.0284
MA0148.1	MA0148.1	0.405
MA0149.1	MA0149.1	0.362
MA0150.1	MA0150.1	0.00469
MA0152.1	MA0152.1	0.102
MA0153.1	MA0153.1	0.799
MA0154.1	MA0154.1	0.125
MA0155.1	MA0155.1	0.559
MA0156.1	MA0156.1	8.2479e-10
MA0157.1	MA0157.1	0.434
MA0159.1	MA0159.1	0.829
MA0160.1	MA0160.1	0.361
MA0162.1	MA0162.1	0.842
MA0163.1	MA0163.1	0.0248
MA0164.1	MA0164.1	0.418
MA0258.1	MA0258.1	0.973
MA0259.1	MA0259.1	0.0983

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10654

Novel motif	Logo	P-value
1	1	0.497
10	10	0.0428
100	100	0.0947
101	101	0.913
102	102	0.634
103	103	0.649
104	104	0.698
105	105	0.0909
106	106	0.365
107	107	0.161
108	108	0.811
109	109	0.972
11	11	0.841
110	110	0.617
111	111	0.333
112	112	0.201
113	113	0.0548
114	114	0.156
115	115	0.596
116	116	0.0973
117	117	0.339
118	118	0.0338
119	119	0.724
12	12	0.595
120	120	0.17
121	121	0.0595
122	122	0.177
123	123	0.368
124	124	0.515
125	125	0.907
126	126	0.146
127	127	0.257
128	128	0.612
129	129	0.861
13	13	0.272
130	130	0.375
131	131	0.587
132	132	0.261
133	133	4.73588e-4
134	134	0.00157
135	135	0.0246
136	136	0.964
137	137	0.249
138	138	0.968
139	139	0.551
14	14	0.425
140	140	0.561
141	141	0.324
142	142	0.596
143	143	0.947
144	144	0.0518
145	145	0.415
146	146	0.0133
147	147	0.826
148	148	0.841
149	149	0.0871
15	15	0.236
150	150	0.89
151	151	0.507
152	152	0.109
153	153	0.324
154	154	0.56
155	155	0.618
156	156	0.916
157	157	0.204
158	158	0.969
159	159	0.615
16	16	0.833
160	160	0.673
161	161	0.88
162	162	0.698
163	163	0.447
164	164	0.0243
165	165	0.697
166	166	0.914
167	167	0.0446
168	168	2.72809e-4
169	169	0.168
17	17	0.719
18	18	0.108
19	19	0.675
2	2	0.028
20	20	0.12
21	21	0.726
22	22	0.327
23	23	0.452
24	24	0.781
25	25	0.477
26	26	0.717
27	27	0.144
28	28	0.843
29	29	0.232
3	3	0.872
30	30	0.0207
31	31	0.947
32	32	0.0747
33	33	0.689
34	34	0.322
35	35	0.23
36	36	0.0989
37	37	0.625
38	38	0.579
39	39	0.911
4	4	0.958
40	40	0.878
41	41	0.754
42	42	0.933
43	43	0.968
44	44	0.903
45	45	0.0178
46	46	0.795
47	47	0.75
48	48	0.944
49	49	0.826
5	5	0.811
50	50	0.345
51	51	0.966
52	52	0.238
53	53	0.286
54	54	0.849
55	55	0.639
56	56	0.76
57	57	0.294
58	58	0.483
59	59	0.336
6	6	0.309
60	60	0.303
61	61	0.707
62	62	0.837
63	63	0.487
64	64	0.955
65	65	0.526
66	66	0.528
67	67	0.47
68	68	0.724
69	69	0.901
7	7	0.522
70	70	0.239
71	71	0.273
72	72	0.0609
73	73	0.762
74	74	0.105
75	75	0.342
76	76	0.0628
77	77	0.226
78	78	0.617
79	79	0.145
8	8	0.604
80	80	7.56823e-5
81	81	0.771
82	82	0.9
83	83	0.728
84	84	0.111
85	85	0.945
86	86	0.788
87	87	0.56
88	88	0.812
89	89	0.666
9	9	0.173
90	90	0.0755
91	91	0.412
92	92	0.47
93	93	0.999
94	94	0.341
95	95	0.802
96	96	0.909
97	97	0.54
98	98	0.31
99	99	0.382

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10654

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010047 human tonsil - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0002372 (tonsil)
0006562 (pharynx)
0000033 (head)
0000479 (tissue)
0001007 (digestive system)
0000344 (mucosa)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004923 (organ component layer)
0004921 (subdivision of digestive tract)
0000161 (orifice)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0001961 (mucosa-associated lymphoid tissue)
0001744 (lymphoid tissue)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001004 (respiratory system)
0002465 (lymphoid system)
0000153 (anterior region of body)
0007811 (craniocervical region)
0000165 (mouth)
0000166 (oral opening)
0001042 (chordate pharynx)
0002193 (hemolymphoid system)
0002405 (immune system)
0001735 (tonsillar ring)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010047 (human tonsil - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
 |DRA_sample_Accession=CAGE@SAMD00004996
-|accession_numbers=CAGE;DRX008752;DRR009624;DRZ001049;DRZ002434
+|accession_numbers=CAGE;DRX008752;DRR009624;DRZ001049;DRZ002434;DRZ012399;DRZ013784
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0002372,UBERON:0006562,UBERON:0000033,UBERON:0000479,UBERON:0001007,UBERON:0000344,UBERON:0004121,UBERON:0000064,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004923,UBERON:0004921,UBERON:0000161,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0001961,UBERON:0001744,UBERON:0010317,UBERON:0001555,UBERON:0001004,UBERON:0002465,UBERON:0000153,UBERON:0007811,UBERON:0000165,UBERON:0000166,UBERON:0001042,UBERON:0002193,UBERON:0002405,UBERON:0001735
 |ancestors_in_cell_lineage_facet=
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr4:57547454..57547469,-!p1@HOPX!2.60!399.87!HOPX;;chr11:111249993..111250006,-!p1@POU2AF1!2.37!233.17!POU2AF1;;chr11:34642612..34642646,+!p1@EHF!2.35!223.74!EHF;;chr17:80797886..80797906,-!p1@ZNF750!2.23!169.39!ZNF750;;chr16:85932760..85932775,+!p1@IRF8!2.19!154.44!IRF8;;chr5:134369879..134369898,-!p2@PITX1!2.12!129.38!PITX1;;chr19:50922187..50922204,+!p1@SPIB!2.06!114.23!SPIB;;chr6:391743..391759,+!p1@IRF4!1.98!93.55!IRF4;;chr20:21686317..21686350,+!p1@PAX1!1.94!86.75!PAX1;;chr1:201979743..201979762,+!p1@ELF3!1.89!76.78!ELF3;;chr1:24645832..24645853,+!p1@GRHL3!1.86!71.06!GRHL3;;chr14:37131058..37131139,+!p1@PAX9!1.84!68.43!PAX9;;chr19:19281060..19281078,-!p2@MEF2BNB-MEF2B,p2@MEF2B!1.83!67.28!MEF2B;;chr5:134369905..134369972,-!p1@PITX1!1.79!91.73!PITX1;;chr1:201979703..201979721,+!p2@ELF3!1.73!52.47!ELF3;;chr11:47400078..47400106,-!p1@SPI1!1.73!52.13!SPI1;;chr11:129245526..129245553,+!p1@BARX2!1.70!49.50!BARX2;;chr15:101069113..101069169,-!p1@CERS3!1.68!46.47!CERS3;;chr9:100615499..100615519,+!p1@FOXE1!1.66!44.39!FOXE1;;chr6:34524093..34524135,-!p1@SPDEF!1.65!44.18!SPDEF;;chr3:189507432..189507459,+!p1@TP63!1.65!43.91!TP63;;chr2:100759010..100759035,-!p1@AFF3!1.65!43.78!AFF3;;chr1:24645921..24645973,+!p2@GRHL3!1.64!42.70!GRHL3;;chr2:231090433..231090469,+!p1@SP140!1.62!40.28!SP140;;chr20:21686290..21686311,+!p2@PAX1!1.61!39.94!PAX1;;chr2:68592406..68592424,+!p1@PLEK!1.59!37.92!PLEK;;chr17:7493405..7493419,-!p1@SOX15!1.54!33.61!SOX15;;chr2:231090471..231090504,+!p2@SP140!1.54!33.47!SP140;;chr17:38020392..38020477,-!p1@IKZF3!1.50!30.71!IKZF3;;chr1:209979467..209979494,-!p1@IRF6!1.49!33.27!IRF6;;chr5:133451294..133451310,+!p2@TCF7!1.49!29.77!TCF7;;chr2:100759037..100759058,-!p2@AFF3!1.48!29.03!AFF3;;chr7:50343634..50343717,+!p2@IKZF1!1.47!28.62!IKZF1;;chr11:34642656..34642667,+!p2@EHF!1.47!28.22!EHF;;chr20:50159198..50159299,-!p1@NFATC2!1.46!39.94!NFATC2;;chr1:25291475..25291511,-!p2@RUNX3!1.45!27.48!RUNX3;;chr17:37934365..37934387,-!p2@IKZF3!1.45!27.01!IKZF3;;chr8:10588010..10588030,-!p1@SOX7!1.44!26.81!SOX7;;chrY:21906594..21906622,-!p1@KDM5D!1.43!26.20!KDM5D;;chr13:73633131..73633149,+!p1@KLF5!1.42!260.65!KLF5;;chr11:129245736..129245758,+!p2@BARX2!1.42!25.59!BARX2;;chr1:25256756..25256774,-!p1@RUNX3!1.40!44.59!RUNX3;;chr6:106534192..106534224,+!p1@PRDM1!1.39!64.79!PRDM1;;chr9:117150254..117150271,-!p1@AKNA!1.39!63.18!AKNA;;chr11:65554528..65554546,+!p1@OVOL1!1.39!23.71!OVOL1;;chr17:37934204..37934241,-!p3@IKZF3!1.37!22.23!IKZF3;;chr2:70142232..70142251,+!p1@MXD1!1.36!120.43!MXD1;;chr12:54785074..54785122,-!p2@ZNF385A!1.36!33.14!ZNF385A;;chr17:53342311..53342400,+!p1@HLF!1.34!24.04!HLF;;chr8:23540441..23540466,-!p1@NKX3-1!1.33!40.34!NKX3-1;;chr18:45663490..45663528,-!p2@ZBTB7C!1.32!20.07!ZBTB7C;;chr11:34645791..34645836,+!p3@EHF!1.32!20.00!EHF;;chr3:63953435..63953499,+!p1@ATXN7!1.32!19.73!ATXN7;;chr5:133450365..133450444,+!p1@TCF7!1.31!87.42!TCF7;;chr21:38071430..38071456,+!p1@SIM2!1.31!19.26!SIM2;;chr12:54785054..54785072,-!p4@ZNF385A!1.29!20.81!ZNF385A;;chr6:1312325..1312340,+!p1@FOXQ1!1.28!29.50!FOXQ1;;chr22:29196433..29196445,-!p4@XBP1!1.28!20.07!XBP1;;chr3:181429704..181429722,+!p1@SOX2!1.28!18.19!SOX2;;chr5:88178983..88179012,-!p1@MEF2C!1.27!134.70!MEF2C;;chr20:62680984..62680999,-!p1@SOX18!1.27!23.44!SOX18;;chr7:50348268..50348366,+!p4@IKZF1!1.26!17.24!IKZF1;;chr9:37034186..37034216,-!p2@PAX5!1.26!17.11!PAX5;;chr1:209979411..209979433,-!p2@IRF6!1.26!17.04!IRF6;;chr17:38020557..38020572,-!p4@IKZF3!1.25!16.70!IKZF3;;chr19:42636586..42636607,-!p1@POU2F2!1.24!44.92!POU2F2;;chr2:10091815..10091864,+!p1@GRHL1!1.23!21.08!GRHL1;;chr6:91006518..91006570,-!p1@BACH2!1.20!34.35!BACH2;;chr6:106534230..106534254,+!p2@PRDM1!1.19!35.90!PRDM1;;chr8:60031619..60031676,-!p1@TOX!1.19!31.18!TOX;;chr2:122042770..122042785,-!p1@TFCP2L1!1.19!14.41!TFCP2L1;;chr3:71355163..71355209,-!p5@FOXP1!1.18!19.67!FOXP1;;chr5:88120151..88120177,-!p6@MEF2C!1.18!14.28!MEF2C;;chr20:56195474..56195506,-!p1@ZBP1!1.17!13.67!ZBP1;;chr17:80797863..80797874,-!p2@ZNF750!1.17!13.67!ZNF750;;chr16:79634624..79634642,-!p1@MAF!1.14!50.24!MAF;;chrX:49121165..49121179,-!p1@FOXP3!1.13!12.59!FOXP3;;chr4:109087445..109087463,-!p1@LEF1!1.13!12.46!LEF1;;chr1:170632285..170632309,+!p1@PRRX1!1.12!13.81!PRRX1;;chr12:52437488..52437507,+!p2@NR4A1!1.12!12.19!NR4A1;;chr7:50344251..50344288,+!p3@IKZF1!1.11!11.85!IKZF1;;chr6:10415276..10415341,-!p2@TFAP2A!1.09!14.01!TFAP2A;;chr2:60781201..60781258,-!p3@BCL11A!1.08!10.98!BCL11A;;chr7:50344289..50344323,+!p1@IKZF1!1.07!10.84!IKZF1;;chr18:77155922..77155939,+!p1@NFATC1!1.06!28.69!NFATC1;;chr20:55204351..55204377,+!p1@TFAP2C!1.06!13.34!TFAP2C;;chr14:38064429..38064486,-!p1@FOXA1!1.06!10.44!FOXA1;;chr8:102504651..102504683,+!p1@GRHL2!1.05!10.30!GRHL2;;chr13:41593425..41593480,-!p1@ELF1!1.04!64.79!ELF1;;chr19:13213662..13213686,-!p1@LYL1!1.04!14.82!LYL1;;chr6:91006575..91006602,-!p2@BACH2!1.04!14.75!BACH2;;chr18:52989031..52989079,-!p2@TCF4!1.03!23.03!TCF4;;chr6:106546808..106546833,+!p3@PRDM1!1.03!12.39!PRDM1;;chr7:97840743..97840786,+!p1@BHLHA15!1.03!9.77!BHLHA15;;chr14:75988771..75988826,+!p1@BATF!1.02!12.86!BATF;;chr15:42749722..42749739,-!p2@ZFP106!1.01!16.70!ZFP106;;chr2:192015701..192015743,-!p1@STAT4!1.01!12.93!STAT4;;chr17:38020516..38020544,-!p5@IKZF3!1.01!9.23!IKZF3;;chr5:158526756..158526797,-!p3@EBF1!1.01!9.23!EBF1;;chr2:60780607..60780624,-!p2@BCL11A!1.00!28.02!BCL11A;;chr3:32023232..32023273,+!p1@ZNF860!1.00!12.93!ZNF860;;chr21:39870339..39870443,-!p1@ERG!1.00!9.03!ERG;;chr3:111314186..111314204,-!p1@ZBED2!1.00!8.96!ZBED2;;chr3:18486354..18486377,-!p2@SATB1!0.99!11.11!SATB1;;chr2:60778035..60778060,-!p4@BCL11A!0.99!10.51!BCL11A;;chr12:26277956..26277980,-!p1@BHLHE41!0.98!31.59!BHLHE41;;chr2:70314240..70314256,+!p4@PCBP1!0.98!18.12!PCBP1;;chr6:126240442..126240459,+!p4@NCOA7!0.97!10.84!NCOA7;;chr3:27763807..27763822,-!p1@EOMES!0.97!8.42!EOMES;;chr4:185395633..185395651,-!p2@IRF2!0.96!13.13!IRF2;;chr4:185395590..185395627,-!p3@IRF2!0.96!10.10!IRF2;;chr17:37934188..37934202,-!p8@IKZF3!0.96!8.22!IKZF3;;chr6:126240380..126240430,+!p2@NCOA7!0.95!21.22!NCOA7;;chr12:26277817..26277863,-!p2@BHLHE41!0.95!10.98!BHLHE41;;chr11:65554563..65554576,+!p2@OVOL1!0.95!7.81!OVOL1;;chr5:133451347..133451358,+!p3@TCF7!0.95!7.81!TCF7;;chr11:128392273..128392308,-!p2@ETS1!0.94!34.08!ETS1;;chr7:15726296..15726315,-!p1@MEOX2!0.94!7.68!MEOX2;;chr19:13213704..13213726,-!p3@LYL1!0.93!9.97!LYL1;;chr11:47400062..47400077,-!p2@SPI1!0.93!7.54!SPI1;;chr2:100758991..100759009,-!p3@AFF3!0.93!7.48!AFF3;;chr14:75988831..75988847,+!p2@BATF!0.92!7.41!BATF;;chr15:67458861..67458879,+!p17@SMAD3!0.92!7.41!SMAD3;;chr17:26833339..26833378,+!p1@FOXN1!0.92!7.34!FOXN1;;chr5:71803177..71803255,-!p1@ZNF366!0.92!7.34!ZNF366;;chr9:37034258..37034270,-!p3@PAX5!0.92!7.34!PAX5;;chr19:45908292..45908374,-!p1@PPP1R13L!0.91!65.74!PPP1R13L;;chr19:45252008..45252024,+!p2@BCL3!0.91!24.31!BCL3;;chr16:86544113..86544145,+!p1@FOXF1!0.90!8.82!FOXF1;;chr22:38380543..38380569,-!p1@SOX10!0.90!6.94!SOX10;;chr15:60884706..60884743,-!p1@RORA!0.89!36.77!RORA;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.89!6.80!PEG3;;chr19:19779619..19779670,+!p1@ZNF101!0.88!19.53!ZNF101;;chr22:29196492..29196503,-!p3@XBP1!0.88!10.44!XBP1;;chr1:6479968..6479986,-!p1@HES2!0.88!6.67!HES2;;chr7:50343895..50343936,+!p5@IKZF1!0.88!6.67!IKZF1;;chr20:39317868..39317884,-!p1@MAFB!0.87!80.96!MAFB;;chr6:157098579..157098634,+!p4@ARID1B!0.87!15.15!ARID1B;;chr2:231090344..231090361,-!p3@SP110!0.87!6.47!SP110;;chr3:181429741..181429767,+!p2@SOX2!0.87!6.47!SOX2;;chr2:61108695..61108753,+!p1@REL!0.86!45.19!REL;;chr1:10754477..10754517,-!p1@CASZ1!0.86!10.78!CASZ1;;chr17:37934280..37934299,-!p6@IKZF3!0.86!6.26!IKZF3;;chr14:105935396..105935413,+!p4@MTA1!0.86!6.26!MTA1;;chr12:52445218..52445237,+!p1@NR4A1!0.85!81.56!NR4A1;;chr6:10412600..10412637,-!p1@TFAP2A!0.85!10.57!TFAP2A;;chr8:86099884..86099918,+!p4@E2F5!0.85!6.13!E2F5;;chr10:64018918..64018936,+!p2@ZNF365!0.85!6.13!ZNF365;;chr5:88179017..88179046,-!p2@MEF2C!0.84!25.46!MEF2C;;chr19:36204309..36204335,+!p1@ZBTB32!0.84!5.99!ZBTB32;;chr1:151804244..151804310,-!p1@RORC!0.84!5.99!RORC;;chr17:38020607..38020621,-!p9@IKZF3!0.84!5.93!IKZF3;;chr3:71179699..71179744,-!p2@FOXP1!0.83!46.54!FOXP1;;chr11:46299199..46299233,+!p1@CREB3L1!0.83!31.79!CREB3L1;;chr3:114866084..114866118,-!p2@ZBTB20!0.83!22.09!ZBTB20;;chr17:38256799..38256815,-!p3@NR1D1!0.83!10.91!NR1D1;;chr19:45260775..45260838,+!p5@BCL3!0.83!7.68!BCL3;;chr1:24645865..24645871,+!p6@GRHL3!0.83!5.79!GRHL3;;chr12:53625966..53626012,-!p2@RARG!0.82!15.83!RARG;;chr2:68592394..68592405,+!p2@PLEK!0.82!5.66!PLEK;;chr2:10091922..10091935,+!p3@GRHL1!0.82!5.59!GRHL1;;chr21:36421535..36421610,-!p2@RUNX1!0.81!20.81!RUNX1;;chr17:7492684..7492778,-!p2@SOX15!0.81!11.99!SOX15;;chr2:63277948..63277974,+!p1@OTX1!0.81!5.39!OTX1;;chr9:110252035..110252057,-!p1@KLF4!0.80!92.74!KLF4;;chr8:123793860..123793921,+!p2@ZHX2!0.80!15.63!ZHX2;;chr2:19558373..19558392,-!p1@OSR1!0.80!15.56!OSR1;;chr10:64576105..64576133,-!p1@EGR2!0.80!11.58!EGR2;;chr1:214161272..214161322,+!p1@PROX1!0.80!7.75!PROX1;;chr7:14028488..14028516,-!p2@ETV1!0.80!5.86!ETV1;;chr1:40105299..40105326,-!p1@HEYL!0.80!5.32!HEYL;;chr12:54778471..54778528,-!p1@ZNF385A!0.80!5.25!ZNF385A;;chr19:45579725..45579743,-!p1@ZNF296!0.79!25.32!ZNF296;;chr16:88752889..88752921,-!p1@SNAI3!0.79!6.20!SNAI3;;chr4:109090075..109090095,-!p2@LEF1!0.79!5.12!LEF1;;chr4:57522513..57522548,-!p4@HOPX!0.79!5.12!HOPX;;chr16:79634595..79634620,-!p2@MAF!0.78!9.63!MAF;;chr4:174451370..174451387,-!p1@HAND2!0.78!5.05!HAND2;;chr9:37027156..37027193,-!p4@PAX5!0.78!4.98!PAX5;;chr19:19729477..19729542,-!p1@PBX4!0.77!11.11!PBX4;;chr6:144385698..144385742,-!p2@PLAGL1!0.77!6.13!PLAGL1;;chrX:106960285..106960299,-!p1@TSC22D3!0.76!139.96!TSC22D3;;chr5:2751762..2751784,-!p1@IRX2!0.76!4.78!IRX2;;chr9:117160738..117160782,-!p2@AKNA!0.75!20.81!AKNA;;chr11:47279504..47279563,+!p1@NR1H3!0.75!11.38!NR1H3;;chr9:37034469..37034474,-!p1@PAX5!0.75!4.65!PAX5;;chr21:38071403..38071428,+!p2@SIM2!0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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000161;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000165;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000166;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000344;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001557;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002465
 |ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0006595,UBERON:0010316
 |fonse_cell_line=
@@ Line 41: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/tonsil%252c%2520adult%252c%2520pool1.CNhs10654.10047-101G2.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/tonsil%252c%2520adult%252c%2520pool1.CNhs10654.10047-101G2.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/tonsil%252c%2520adult%252c%2520pool1.CNhs10654.10047-101G2.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/tonsil%252c%2520adult%252c%2520pool1.CNhs10654.10047-101G2.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/tonsil%252c%2520adult%252c%2520pool1.CNhs10654.10047-101G2.hg38.nobarcode.ctss.bed.gz
 |id=FF:10047-101G2
 |is_a=EFO:0002091;;FF:0010047
 |is_obsolete=
 |library_id=CNhs10654
-|library_id_phase_based=1:CNhs10654
+|library_id_phase_based=2:CNhs10654
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10047
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10047
 |name=tonsil, adult, pool1
 |namespace=FANTOM5
@@ Line 51: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs10654,LSID658,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10047-101G2;search_select_hide=table117:FF:10047-101G2
 }}

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FF:10047-101G2: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 12:17, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0