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(Created page with "{{f5samples |id=FF:10047-101G2 |name=tonsil, adult, pool1 |sample_id=10047 |rna_tube_id=101G2 |rna_box=101 |rna_position=G2 |sample_cell_lot=NA |sample_cell_catalog=NA...")
 
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{{f5samples
{{f5samples
|id=FF:10047-101G2
|DRA_sample_Accession=CAGE@SAMD00004996
|name=tonsil, adult, pool1
|accession_numbers=CAGE;DRX008752;DRR009624;DRZ001049;DRZ002434;DRZ012399;DRZ013784
|sample_id=10047
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0002372,UBERON:0006562,UBERON:0000033,UBERON:0000479,UBERON:0001007,UBERON:0000344,UBERON:0004121,UBERON:0000064,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004923,UBERON:0004921,UBERON:0000161,UBERON:0001444,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0001961,UBERON:0001744,UBERON:0010317,UBERON:0001555,UBERON:0001004,UBERON:0002465,UBERON:0000153,UBERON:0007811,UBERON:0000165,UBERON:0000166,UBERON:0001042,UBERON:0002193,UBERON:0002405,UBERON:0001735
|rna_tube_id=101G2
|rna_box=101
|rna_position=G2
|sample_cell_lot=NA
|sample_cell_catalog=NA
|sample_company=Clontech
|rna_lot_number=9120165A
|rna_catalog_number=Cat:636587
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=22-61 years old adult
|sample_tissue=tonsil
|sample_donor(cell lot)=34 pool
|sample_sex=mixed
|sample_age=
|sample_ethnicity=C
|rna_rin=
|rna_od260/230=
|rna_od260/280=
|sample_cell_type=CELL MIXTURE - tissue sample
|sample_cell_line=
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_experimental_condition=
|sample_disease=normal
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_weight_ug=50.00000
|rna_concentration=
|sample_note=
|profile_hcage=CNhs10654,LSID658,release008,COMPLETED
|profile_cagescan=,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
|ancestors_in_anatomy_facet=UBERON:0000033,UBERON:0000061,UBERON:0000062,UBERON:0000063,UBERON:0000064,UBERON:0000065,UBERON:0000072,UBERON:0000077,UBERON:0000153,UBERON:0000161,UBERON:0000165,UBERON:0000166,UBERON:0000344,UBERON:0000464,UBERON:0000465,UBERON:0000466,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0000926,UBERON:0000930,UBERON:0001004,UBERON:0001007,UBERON:0001041,UBERON:0001042,UBERON:0001062,UBERON:0001444,UBERON:0001555,UBERON:0001557,UBERON:0001735,UBERON:0001744,UBERON:0001961,UBERON:0002050,UBERON:0002193,UBERON:0002372,UBERON:0002405,UBERON:0002465,UBERON:0002532,UBERON:0003104,UBERON:0004111,UBERON:0004119,UBERON:0004120,UBERON:0004185,UBERON:0004921,UBERON:0004923,UBERON:0005423,UBERON:0006562,UBERON:0007023,UBERON:0007026,UBERON:0009142,UBERON:0009145
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010047
 
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|expression_enrichment_score=chr4:57547454..57547469,-!p1@HOPX!2.60!399.87!HOPX;;chr11:111249993..111250006,-!p1@POU2AF1!2.37!233.17!POU2AF1;;chr11:34642612..34642646,+!p1@EHF!2.35!223.74!EHF;;chr17:80797886..80797906,-!p1@ZNF750!2.23!169.39!ZNF750;;chr16:85932760..85932775,+!p1@IRF8!2.19!154.44!IRF8;;chr5:134369879..134369898,-!p2@PITX1!2.12!129.38!PITX1;;chr19:50922187..50922204,+!p1@SPIB!2.06!114.23!SPIB;;chr6:391743..391759,+!p1@IRF4!1.98!93.55!IRF4;;chr20:21686317..21686350,+!p1@PAX1!1.94!86.75!PAX1;;chr1:201979743..201979762,+!p1@ELF3!1.89!76.78!ELF3;;chr1:24645832..24645853,+!p1@GRHL3!1.86!71.06!GRHL3;;chr14:37131058..37131139,+!p1@PAX9!1.84!68.43!PAX9;;chr19:19281060..19281078,-!p2@MEF2BNB-MEF2B,p2@MEF2B!1.83!67.28!MEF2B;;chr5:134369905..134369972,-!p1@PITX1!1.79!91.73!PITX1;;chr1:201979703..201979721,+!p2@ELF3!1.73!52.47!ELF3;;chr11:47400078..47400106,-!p1@SPI1!1.73!52.13!SPI1;;chr11:129245526..129245553,+!p1@BARX2!1.70!49.50!BARX2;;chr15:101069113..101069169,-!p1@CERS3!1.68!46.47!CERS3;;chr9:100615499..100615519,+!p1@FOXE1!1.66!44.39!FOXE1;;chr6:34524093..34524135,-!p1@SPDEF!1.65!44.18!SPDEF;;chr3:189507432..189507459,+!p1@TP63!1.65!43.91!TP63;;chr2:100759010..100759035,-!p1@AFF3!1.65!43.78!AFF3;;chr1:24645921..24645973,+!p2@GRHL3!1.64!42.70!GRHL3;;chr2:231090433..231090469,+!p1@SP140!1.62!40.28!SP140;;chr20:21686290..21686311,+!p2@PAX1!1.61!39.94!PAX1;;chr2:68592406..68592424,+!p1@PLEK!1.59!37.92!PLEK;;chr17:7493405..7493419,-!p1@SOX15!1.54!33.61!SOX15;;chr2:231090471..231090504,+!p2@SP140!1.54!33.47!SP140;;chr17:38020392..38020477,-!p1@IKZF3!1.50!30.71!IKZF3;;chr1:209979467..209979494,-!p1@IRF6!1.49!33.27!IRF6;;chr5:133451294..133451310,+!p2@TCF7!1.49!29.77!TCF7;;chr2:100759037..100759058,-!p2@AFF3!1.48!29.03!AFF3;;chr7:50343634..50343717,+!p2@IKZF1!1.47!28.62!IKZF1;;chr11:34642656..34642667,+!p2@EHF!1.47!28.22!EHF;;chr20:50159198..50159299,-!p1@NFATC2!1.46!39.94!NFATC2;;chr1:25291475..25291511,-!p2@RUNX3!1.45!27.48!RUNX3;;chr17:37934365..37934387,-!p2@IKZF3!1.45!27.01!IKZF3;;chr8:10588010..10588030,-!p1@SOX7!1.44!26.81!SOX7;;chrY:21906594..21906622,-!p1@KDM5D!1.43!26.20!KDM5D;;chr13:73633131..73633149,+!p1@KLF5!1.42!260.65!KLF5;;chr11:129245736..129245758,+!p2@BARX2!1.42!25.59!BARX2;;chr1:25256756..25256774,-!p1@RUNX3!1.40!44.59!RUNX3;;chr6:106534192..106534224,+!p1@PRDM1!1.39!64.79!PRDM1;;chr9:117150254..117150271,-!p1@AKNA!1.39!63.18!AKNA;;chr11:65554528..65554546,+!p1@OVOL1!1.39!23.71!OVOL1;;chr17:37934204..37934241,-!p3@IKZF3!1.37!22.23!IKZF3;;chr2:70142232..70142251,+!p1@MXD1!1.36!120.43!MXD1;;chr12:54785074..54785122,-!p2@ZNF385A!1.36!33.14!ZNF385A;;chr17:53342311..53342400,+!p1@HLF!1.34!24.04!HLF;;chr8:23540441..23540466,-!p1@NKX3-1!1.33!40.34!NKX3-1;;chr18:45663490..45663528,-!p2@ZBTB7C!1.32!20.07!ZBTB7C;;chr11:34645791..34645836,+!p3@EHF!1.32!20.00!EHF;;chr3:63953435..63953499,+!p1@ATXN7!1.32!19.73!ATXN7;;chr5:133450365..133450444,+!p1@TCF7!1.31!87.42!TCF7;;chr21:38071430..38071456,+!p1@SIM2!1.31!19.26!SIM2;;chr12:54785054..54785072,-!p4@ZNF385A!1.29!20.81!ZNF385A;;chr6:1312325..1312340,+!p1@FOXQ1!1.28!29.50!FOXQ1;;chr22:29196433..29196445,-!p4@XBP1!1.28!20.07!XBP1;;chr3:181429704..181429722,+!p1@SOX2!1.28!18.19!SOX2;;chr5:88178983..88179012,-!p1@MEF2C!1.27!134.70!MEF2C;;chr20:62680984..62680999,-!p1@SOX18!1.27!23.44!SOX18;;chr7:50348268..50348366,+!p4@IKZF1!1.26!17.24!IKZF1;;chr9:37034186..37034216,-!p2@PAX5!1.26!17.11!PAX5;;chr1:209979411..209979433,-!p2@IRF6!1.26!17.04!IRF6;;chr17:38020557..38020572,-!p4@IKZF3!1.25!16.70!IKZF3;;chr19:42636586..42636607,-!p1@POU2F2!1.24!44.92!POU2F2;;chr2:10091815..10091864,+!p1@GRHL1!1.23!21.08!GRHL1;;chr6:91006518..91006570,-!p1@BACH2!1.20!34.35!BACH2;;chr6:106534230..106534254,+!p2@PRDM1!1.19!35.90!PRDM1;;chr8:60031619..60031676,-!p1@TOX!1.19!31.18!TOX;;chr2:122042770..122042785,-!p1@TFCP2L1!1.19!14.41!TFCP2L1;;chr3:71355163..71355209,-!p5@FOXP1!1.18!19.67!FOXP1;;chr5:88120151..88120177,-!p6@MEF2C!1.18!14.28!MEF2C;;chr20:56195474..56195506,-!p1@ZBP1!1.17!13.67!ZBP1;;chr17:80797863..80797874,-!p2@ZNF750!1.17!13.67!ZNF750;;chr16:79634624..79634642,-!p1@MAF!1.14!50.24!MAF;;chrX:49121165..49121179,-!p1@FOXP3!1.13!12.59!FOXP3;;chr4:109087445..109087463,-!p1@LEF1!1.13!12.46!LEF1;;chr1:170632285..170632309,+!p1@PRRX1!1.12!13.81!PRRX1;;chr12:52437488..52437507,+!p2@NR4A1!1.12!12.19!NR4A1;;chr7:50344251..50344288,+!p3@IKZF1!1.11!11.85!IKZF1;;chr6:10415276..10415341,-!p2@TFAP2A!1.09!14.01!TFAP2A;;chr2:60781201..60781258,-!p3@BCL11A!1.08!10.98!BCL11A;;chr7:50344289..50344323,+!p1@IKZF1!1.07!10.84!IKZF1;;chr18:77155922..77155939,+!p1@NFATC1!1.06!28.69!NFATC1;;chr20:55204351..55204377,+!p1@TFAP2C!1.06!13.34!TFAP2C;;chr14:38064429..38064486,-!p1@FOXA1!1.06!10.44!FOXA1;;chr8:102504651..102504683,+!p1@GRHL2!1.05!10.30!GRHL2;;chr13:41593425..41593480,-!p1@ELF1!1.04!64.79!ELF1;;chr19:13213662..13213686,-!p1@LYL1!1.04!14.82!LYL1;;chr6:91006575..91006602,-!p2@BACH2!1.04!14.75!BACH2;;chr18:52989031..52989079,-!p2@TCF4!1.03!23.03!TCF4;;chr6:106546808..106546833,+!p3@PRDM1!1.03!12.39!PRDM1;;chr7:97840743..97840786,+!p1@BHLHA15!1.03!9.77!BHLHA15;;chr14:75988771..75988826,+!p1@BATF!1.02!12.86!BATF;;chr15:42749722..42749739,-!p2@ZFP106!1.01!16.70!ZFP106;;chr2:192015701..192015743,-!p1@STAT4!1.01!12.93!STAT4;;chr17:38020516..38020544,-!p5@IKZF3!1.01!9.23!IKZF3;;chr5:158526756..158526797,-!p3@EBF1!1.01!9.23!EBF1;;chr2:60780607..60780624,-!p2@BCL11A!1.00!28.02!BCL11A;;chr3:32023232..32023273,+!p1@ZNF860!1.00!12.93!ZNF860;;chr21:39870339..39870443,-!p1@ERG!1.00!9.03!ERG;;chr3:111314186..111314204,-!p1@ZBED2!1.00!8.96!ZBED2;;chr3:18486354..18486377,-!p2@SATB1!0.99!11.11!SATB1;;chr2:60778035..60778060,-!p4@BCL11A!0.99!10.51!BCL11A;;chr12:26277956..26277980,-!p1@BHLHE41!0.98!31.59!BHLHE41;;chr2:70314240..70314256,+!p4@PCBP1!0.98!18.12!PCBP1;;chr6:126240442..126240459,+!p4@NCOA7!0.97!10.84!NCOA7;;chr3:27763807..27763822,-!p1@EOMES!0.97!8.42!EOMES;;chr4:185395633..185395651,-!p2@IRF2!0.96!13.13!IRF2;;chr4:185395590..185395627,-!p3@IRF2!0.96!10.10!IRF2;;chr17:37934188..37934202,-!p8@IKZF3!0.96!8.22!IKZF3;;chr6:126240380..126240430,+!p2@NCOA7!0.95!21.22!NCOA7;;chr12:26277817..26277863,-!p2@BHLHE41!0.95!10.98!BHLHE41;;chr11:65554563..65554576,+!p2@OVOL1!0.95!7.81!OVOL1;;chr5:133451347..133451358,+!p3@TCF7!0.95!7.81!TCF7;;chr11:128392273..128392308,-!p2@ETS1!0.94!34.08!ETS1;;chr7:15726296..15726315,-!p1@MEOX2!0.94!7.68!MEOX2;;chr19:13213704..13213726,-!p3@LYL1!0.93!9.97!LYL1;;chr11:47400062..47400077,-!p2@SPI1!0.93!7.54!SPI1;;chr2:100758991..100759009,-!p3@AFF3!0.93!7.48!AFF3;;chr14:75988831..75988847,+!p2@BATF!0.92!7.41!BATF;;chr15:67458861..67458879,+!p17@SMAD3!0.92!7.41!SMAD3;;chr17:26833339..26833378,+!p1@FOXN1!0.92!7.34!FOXN1;;chr5:71803177..71803255,-!p1@ZNF366!0.92!7.34!ZNF366;;chr9:37034258..37034270,-!p3@PAX5!0.92!7.34!PAX5;;chr19:45908292..45908374,-!p1@PPP1R13L!0.91!65.74!PPP1R13L;;chr19:45252008..45252024,+!p2@BCL3!0.91!24.31!BCL3;;chr16:86544113..86544145,+!p1@FOXF1!0.90!8.82!FOXF1;;chr22:38380543..38380569,-!p1@SOX10!0.90!6.94!SOX10;;chr15:60884706..60884743,-!p1@RORA!0.89!36.77!RORA;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.89!6.80!PEG3;;chr19:19779619..19779670,+!p1@ZNF101!0.88!19.53!ZNF101;;chr22:29196492..29196503,-!p3@XBP1!0.88!10.44!XBP1;;chr1:6479968..6479986,-!p1@HES2!0.88!6.67!HES2;;chr7:50343895..50343936,+!p5@IKZF1!0.88!6.67!IKZF1;;chr20:39317868..39317884,-!p1@MAFB!0.87!80.96!MAFB;;chr6:157098579..157098634,+!p4@ARID1B!0.87!15.15!ARID1B;;chr2:231090344..231090361,-!p3@SP110!0.87!6.47!SP110;;chr3:181429741..181429767,+!p2@SOX2!0.87!6.47!SOX2;;chr2:61108695..61108753,+!p1@REL!0.86!45.19!REL;;chr1:10754477..10754517,-!p1@CASZ1!0.86!10.78!CASZ1;;chr17:37934280..37934299,-!p6@IKZF3!0.86!6.26!IKZF3;;chr14:105935396..105935413,+!p4@MTA1!0.86!6.26!MTA1;;chr12:52445218..52445237,+!p1@NR4A1!0.85!81.56!NR4A1;;chr6:10412600..10412637,-!p1@TFAP2A!0.85!10.57!TFAP2A;;chr8:86099884..86099918,+!p4@E2F5!0.85!6.13!E2F5;;chr10:64018918..64018936,+!p2@ZNF365!0.85!6.13!ZNF365;;chr5:88179017..88179046,-!p2@MEF2C!0.84!25.46!MEF2C;;chr19:36204309..36204335,+!p1@ZBTB32!0.84!5.99!ZBTB32;;chr1:151804244..151804310,-!p1@RORC!0.84!5.99!RORC;;chr17:38020607..38020621,-!p9@IKZF3!0.84!5.93!IKZF3;;chr3:71179699..71179744,-!p2@FOXP1!0.83!46.54!FOXP1;;chr11:46299199..46299233,+!p1@CREB3L1!0.83!31.79!CREB3L1;;chr3:114866084..114866118,-!p2@ZBTB20!0.83!22.09!ZBTB20;;chr17:38256799..38256815,-!p3@NR1D1!0.83!10.91!NR1D1;;chr19:45260775..45260838,+!p5@BCL3!0.83!7.68!BCL3;;chr1:24645865..24645871,+!p6@GRHL3!0.83!5.79!GRHL3;;chr12:53625966..53626012,-!p2@RARG!0.82!15.83!RARG;;chr2:68592394..68592405,+!p2@PLEK!0.82!5.66!PLEK;;chr2:10091922..10091935,+!p3@GRHL1!0.82!5.59!GRHL1;;chr21:36421535..36421610,-!p2@RUNX1!0.81!20.81!RUNX1;;chr17:7492684..7492778,-!p2@SOX15!0.81!11.99!SOX15;;chr2:63277948..63277974,+!p1@OTX1!0.81!5.39!OTX1;;chr9:110252035..110252057,-!p1@KLF4!0.80!92.74!KLF4;;chr8:123793860..123793921,+!p2@ZHX2!0.80!15.63!ZHX2;;chr2:19558373..19558392,-!p1@OSR1!0.80!15.56!OSR1;;chr10:64576105..64576133,-!p1@EGR2!0.80!11.58!EGR2;;chr1:214161272..214161322,+!p1@PROX1!0.80!7.75!PROX1;;chr7:14028488..14028516,-!p2@ETV1!0.80!5.86!ETV1;;chr1:40105299..40105326,-!p1@HEYL!0.80!5.32!HEYL;;chr12:54778471..54778528,-!p1@ZNF385A!0.80!5.25!ZNF385A;;chr19:45579725..45579743,-!p1@ZNF296!0.79!25.32!ZNF296;;chr16:88752889..88752921,-!p1@SNAI3!0.79!6.20!SNAI3;;chr4:109090075..109090095,-!p2@LEF1!0.79!5.12!LEF1;;chr4:57522513..57522548,-!p4@HOPX!0.79!5.12!HOPX;;chr16:79634595..79634620,-!p2@MAF!0.78!9.63!MAF;;chr4:174451370..174451387,-!p1@HAND2!0.78!5.05!HAND2;;chr9:37027156..37027193,-!p4@PAX5!0.78!4.98!PAX5;;chr19:19729477..19729542,-!p1@PBX4!0.77!11.11!PBX4;;chr6:144385698..144385742,-!p2@PLAGL1!0.77!6.13!PLAGL1;;chrX:106960285..106960299,-!p1@TSC22D3!0.76!139.96!TSC22D3;;chr5:2751762..2751784,-!p1@IRX2!0.76!4.78!IRX2;;chr9:117160738..117160782,-!p2@AKNA!0.75!20.81!AKNA;;chr11:47279504..47279563,+!p1@NR1H3!0.75!11.38!NR1H3;;chr9:37034469..37034474,-!p1@PAX5!0.75!4.65!PAX5;;chr21:38071403..38071428,+!p2@SIM2!0.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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000161;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000165;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000166;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000344;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001557;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002465
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0006595,UBERON:0010316
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 67: Line 41:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
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|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/tonsil%252c%2520adult%252c%2520pool1.CNhs10654.10047-101G2.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/tonsil%252c%2520adult%252c%2520pool1.CNhs10654.10047-101G2.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/tonsil%252c%2520adult%252c%2520pool1.CNhs10654.10047-101G2.hg38.nobarcode.ctss.bed.gz
|id=FF:10047-101G2
|is_a=EFO:0002091;;FF:0010047
|is_obsolete=
|library_id=CNhs10654
|library_id_phase_based=2:CNhs10654
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10047
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10047
|name=tonsil, adult, pool1
|namespace=FANTOM5
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|profile_hcage=CNhs10654,LSID658,release008,COMPLETED
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|rna_box=101
|rna_catalog_number=Cat:636587
|rna_concentration=1
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
|rna_lot_number=9120165A
|rna_od260/230=
|rna_od260/280=
|rna_position=G2
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=101G2
|rna_weight_ug=50
|sample_age=
|sample_category=tissues
|sample_cell_catalog=NA
|sample_cell_line=
|sample_cell_lot=NA
|sample_cell_type=CELL MIXTURE - tissue sample
|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
|sample_company=Clontech
|sample_description=
|sample_dev_stage=22-61 years old adult
|sample_disease=normal
|sample_donor(cell lot)=34 pool
|sample_ethnicity=C
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.76143504667881e-211!GO:0005737;cytoplasm;6.09684910613625e-179!GO:0043226;organelle;1.36424605887892e-148!GO:0043229;intracellular organelle;3.52549298782361e-148!GO:0043227;membrane-bound organelle;2.26863155248375e-130!GO:0043231;intracellular membrane-bound organelle;3.66245094296137e-130!GO:0005515;protein binding;1.63620312568329e-110!GO:0044444;cytoplasmic part;1.38635227308158e-107!GO:0044422;organelle part;9.78733577710703e-99!GO:0044446;intracellular organelle part;7.96243348165019e-97!GO:0032991;macromolecular complex;5.99360256376112e-72!GO:0043170;macromolecule metabolic process;4.86413417783841e-55!GO:0044237;cellular metabolic process;5.40018273890182e-55!GO:0044238;primary metabolic process;1.35983267684399e-54!GO:0030529;ribonucleoprotein complex;6.06478659272124e-52!GO:0005634;nucleus;4.45103330999589e-51!GO:0044428;nuclear part;1.19978170594245e-49!GO:0003723;RNA binding;2.28892060608099e-49!GO:0043233;organelle lumen;2.68038235797402e-45!GO:0031974;membrane-enclosed lumen;2.68038235797402e-45!GO:0019538;protein metabolic process;1.71723144166939e-44!GO:0016043;cellular component organization and biogenesis;3.926007563876e-41!GO:0033036;macromolecule localization;5.64150088874316e-40!GO:0043234;protein complex;8.47921811833686e-40!GO:0044260;cellular macromolecule metabolic process;2.7974280779239e-39!GO:0044267;cellular protein metabolic process;1.16049857613182e-38!GO:0015031;protein transport;3.57196303833343e-38!GO:0045184;establishment of protein localization;1.83886854986362e-37!GO:0008104;protein localization;2.62583045081329e-37!GO:0031090;organelle membrane;6.46670189157265e-36!GO:0006412;translation;1.33685767286355e-35!GO:0005739;mitochondrion;2.04995334919588e-34!GO:0005829;cytosol;5.4873734793102e-33!GO:0043228;non-membrane-bound organelle;8.58855692340077e-33!GO:0043232;intracellular non-membrane-bound organelle;8.58855692340077e-33!GO:0043283;biopolymer metabolic process;2.0165527849184e-31!GO:0016071;mRNA metabolic process;2.0472070371919e-30!GO:0005840;ribosome;2.71851760572376e-30!GO:0031981;nuclear lumen;2.84359129318361e-30!GO:0006396;RNA processing;5.10207395615621e-30!GO:0065003;macromolecular complex assembly;2.23558231328363e-29!GO:0031967;organelle envelope;2.54842848225419e-28!GO:0022607;cellular component assembly;4.06542061039175e-28!GO:0031975;envelope;4.54457964805388e-28!GO:0046907;intracellular transport;1.51835390134548e-27!GO:0009059;macromolecule biosynthetic process;1.89946935257138e-27!GO:0008380;RNA splicing;1.31511634189168e-26!GO:0003735;structural constituent of ribosome;2.22054574015952e-26!GO:0006886;intracellular protein transport;2.33455337232286e-26!GO:0044429;mitochondrial part;7.22827309764052e-26!GO:0006397;mRNA processing;3.66163959074987e-25!GO:0006996;organelle organization and biogenesis;3.54744456449569e-24!GO:0033279;ribosomal subunit;5.64389861455162e-24!GO:0009058;biosynthetic process;1.85233802857076e-23!GO:0010467;gene expression;1.90416556683601e-23!GO:0006915;apoptosis;6.85192112980873e-22!GO:0012501;programmed cell death;9.90680772809335e-22!GO:0044249;cellular biosynthetic process;2.40144161041701e-21!GO:0008134;transcription factor binding;7.83487050101433e-21!GO:0005654;nucleoplasm;2.24214656280687e-20!GO:0048770;pigment granule;2.52798918005309e-20!GO:0042470;melanosome;2.52798918005309e-20!GO:0051641;cellular localization;3.25536101189646e-20!GO:0008219;cell death;3.41479328135576e-20!GO:0016265;death;3.41479328135576e-20!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.09520539574043e-20!GO:0051649;establishment of cellular localization;4.71593782562426e-20!GO:0005681;spliceosome;1.57011894916367e-19!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.64762668710336e-19!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.38856352960995e-18!GO:0044445;cytosolic part;1.93407057128354e-18!GO:0000166;nucleotide binding;9.02020444493761e-18!GO:0005740;mitochondrial envelope;1.74754134036591e-17!GO:0019866;organelle inner membrane;1.74754134036591e-17!GO:0005783;endoplasmic reticulum;4.83255420732525e-17!GO:0031966;mitochondrial membrane;8.7206007926206e-17!GO:0044265;cellular macromolecule catabolic process;1.78794464369853e-16!GO:0044451;nucleoplasm part;2.29668217841315e-16!GO:0006119;oxidative phosphorylation;2.81839257904087e-16!GO:0005743;mitochondrial inner membrane;6.71462035507972e-16!GO:0012505;endomembrane system;8.75164888794787e-16!GO:0006259;DNA metabolic process;9.1507471783144e-16!GO:0043412;biopolymer modification;9.74855775113845e-16!GO:0042981;regulation of apoptosis;1.0821288060697e-14!GO:0006464;protein modification process;1.34704436716041e-14!GO:0043067;regulation of programmed cell death;3.53856656875432e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;3.98520498000453e-14!GO:0015935;small ribosomal subunit;5.58405834865969e-14!GO:0006511;ubiquitin-dependent protein catabolic process;6.11977286935165e-14!GO:0019941;modification-dependent protein catabolic process;6.95947184725768e-14!GO:0043632;modification-dependent macromolecule catabolic process;6.95947184725768e-14!GO:0043687;post-translational protein modification;7.37969863608458e-14!GO:0048523;negative regulation of cellular process;9.28749146626489e-14!GO:0044257;cellular protein catabolic process;1.39135671054901e-13!GO:0006512;ubiquitin cycle;1.4270000335256e-13!GO:0022618;protein-RNA complex assembly;2.34702490935489e-13!GO:0032553;ribonucleotide binding;2.58769520232765e-13!GO:0032555;purine ribonucleotide binding;2.58769520232765e-13!GO:0006366;transcription from RNA polymerase II promoter;3.09153120527254e-13!GO:0016462;pyrophosphatase activity;3.17233780468271e-13!GO:0005794;Golgi apparatus;3.32695216597701e-13!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.60884436910325e-13!GO:0017076;purine nucleotide binding;4.07347354643988e-13!GO:0016817;hydrolase activity, acting on acid anhydrides;4.54969314563205e-13!GO:0017111;nucleoside-triphosphatase activity;4.58741254597793e-13!GO:0016874;ligase activity;4.96836415458603e-13!GO:0016192;vesicle-mediated transport;7.95513185529548e-13!GO:0043285;biopolymer catabolic process;8.63630594087468e-13!GO:0006913;nucleocytoplasmic transport;1.07426228905605e-12!GO:0003712;transcription cofactor activity;1.24866156165393e-12!GO:0006605;protein targeting;1.34335769057138e-12!GO:0009057;macromolecule catabolic process;1.49866783859301e-12!GO:0000502;proteasome complex (sensu Eukaryota);1.99589556907106e-12!GO:0048519;negative regulation of biological process;2.18338278572621e-12!GO:0051169;nuclear transport;2.78482591332043e-12!GO:0044248;cellular catabolic process;3.12026438339447e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);6.49036512800173e-12!GO:0048193;Golgi vesicle transport;9.33010588101915e-12!GO:0016604;nuclear body;1.46070108090267e-11!GO:0006461;protein complex assembly;1.47433860610858e-11!GO:0005635;nuclear envelope;1.49241906342656e-11!GO:0005746;mitochondrial respiratory chain;1.6770964833219e-11!GO:0044455;mitochondrial membrane part;2.29112683541368e-11!GO:0050789;regulation of biological process;2.38084120169608e-11!GO:0050794;regulation of cellular process;2.48720753127088e-11!GO:0031980;mitochondrial lumen;3.90561309701947e-11!GO:0005759;mitochondrial matrix;3.90561309701947e-11!GO:0007049;cell cycle;3.94274789799522e-11!GO:0008092;cytoskeletal protein binding;4.0313908254474e-11!GO:0015934;large ribosomal subunit;4.74638945451156e-11!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;6.0070360312319e-11!GO:0044432;endoplasmic reticulum part;7.14895993627309e-11!GO:0030163;protein catabolic process;7.14895993627309e-11!GO:0006457;protein folding;1.12170375728571e-10!GO:0050136;NADH dehydrogenase (quinone) activity;1.3529259015258e-10!GO:0003954;NADH dehydrogenase activity;1.3529259015258e-10!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.3529259015258e-10!GO:0008135;translation factor activity, nucleic acid binding;1.35550317191844e-10!GO:0005730;nucleolus;1.62296294711598e-10!GO:0051246;regulation of protein metabolic process;3.12858607253866e-10!GO:0031965;nuclear membrane;3.25608198538523e-10!GO:0003676;nucleic acid binding;4.12880321398792e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;4.5398403634456e-10!GO:0000375;RNA splicing, via transesterification reactions;4.5398403634456e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.5398403634456e-10!GO:0005524;ATP binding;5.37171723479611e-10!GO:0016070;RNA metabolic process;5.37662299161024e-10!GO:0006793;phosphorus metabolic process;8.25157572786974e-10!GO:0006796;phosphate metabolic process;8.25157572786974e-10!GO:0032559;adenyl ribonucleotide binding;1.31627488267828e-09!GO:0030036;actin cytoskeleton organization and biogenesis;1.56146010503141e-09!GO:0016607;nuclear speck;1.82288530997818e-09!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.91029139162545e-09!GO:0030554;adenyl nucleotide binding;2.40574673589291e-09!GO:0006916;anti-apoptosis;2.58167927270565e-09!GO:0019899;enzyme binding;3.13572938950518e-09!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);3.35480002996212e-09!GO:0043069;negative regulation of programmed cell death;3.44497748833337e-09!GO:0007249;I-kappaB kinase/NF-kappaB cascade;3.80649805295411e-09!GO:0043066;negative regulation of apoptosis;4.16938723177035e-09!GO:0007243;protein kinase cascade;5.56865295476749e-09!GO:0042775;organelle ATP synthesis coupled electron transport;5.64817618611074e-09!GO:0042773;ATP synthesis coupled electron transport;5.64817618611074e-09!GO:0008565;protein transporter activity;5.73082580449016e-09!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;6.66470415428676e-09!GO:0007264;small GTPase mediated signal transduction;7.16649267405574e-09!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;7.21911948296774e-09!GO:0006325;establishment and/or maintenance of chromatin architecture;8.0526298930643e-09!GO:0006446;regulation of translational initiation;8.32421814326247e-09!GO:0030964;NADH dehydrogenase complex (quinone);8.32421814326247e-09!GO:0045271;respiratory chain complex I;8.32421814326247e-09!GO:0005747;mitochondrial respiratory chain complex I;8.32421814326247e-09!GO:0017038;protein import;8.32421814326247e-09!GO:0048522;positive regulation of cellular process;9.60458225850506e-09!GO:0016564;transcription repressor activity;1.01472477793465e-08!GO:0030029;actin filament-based process;1.07797089090692e-08!GO:0016310;phosphorylation;1.07797089090692e-08!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.62721078939157e-08!GO:0006950;response to stress;1.73435311144896e-08!GO:0005768;endosome;1.98475666559907e-08!GO:0031982;vesicle;2.72135650112935e-08!GO:0008639;small protein conjugating enzyme activity;2.74463208923827e-08!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.76921683307662e-08!GO:0048518;positive regulation of biological process;2.8363620004852e-08!GO:0019829;cation-transporting ATPase activity;2.89961306392074e-08!GO:0005793;ER-Golgi intermediate compartment;2.89998579348579e-08!GO:0031324;negative regulation of cellular metabolic process;2.91998908508212e-08!GO:0006413;translational initiation;3.04871127129106e-08!GO:0003743;translation initiation factor activity;3.1014045501812e-08!GO:0044453;nuclear membrane part;3.12610236354666e-08!GO:0005789;endoplasmic reticulum membrane;3.18172208365571e-08!GO:0006323;DNA packaging;3.41451807492611e-08!GO:0051276;chromosome organization and biogenesis;3.43684462477952e-08!GO:0004842;ubiquitin-protein ligase activity;3.64677697233861e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;3.89074348595049e-08!GO:0031988;membrane-bound vesicle;4.29900405731465e-08!GO:0051186;cofactor metabolic process;4.6559891030214e-08!GO:0022402;cell cycle process;7.21449144498079e-08!GO:0019787;small conjugating protein ligase activity;8.72873307870542e-08!GO:0031410;cytoplasmic vesicle;1.08361504660399e-07!GO:0016481;negative regulation of transcription;1.14350502251588e-07!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.1508830420764e-07!GO:0042802;identical protein binding;1.15659842253713e-07!GO:0051082;unfolded protein binding;1.31927525792264e-07!GO:0016023;cytoplasmic membrane-bound vesicle;1.39608966072791e-07!GO:0005773;vacuole;1.51823720165659e-07!GO:0051170;nuclear import;1.56768794840113e-07!GO:0065007;biological regulation;1.7338586306215e-07!GO:0009892;negative regulation of metabolic process;1.77181449345145e-07!GO:0006606;protein import into nucleus;1.85504308112208e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.22249790796877e-07!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.38210519359822e-07!GO:0002376;immune system process;2.54839384010509e-07!GO:0005761;mitochondrial ribosome;2.57026853308961e-07!GO:0000313;organellar ribosome;2.57026853308961e-07!GO:0015078;hydrogen ion transmembrane transporter activity;2.62787901142171e-07!GO:0007242;intracellular signaling cascade;2.64554221759064e-07!GO:0003713;transcription coactivator activity;2.80695248434729e-07!GO:0000785;chromatin;3.04726665408143e-07!GO:0009056;catabolic process;3.09809871846509e-07!GO:0005643;nuclear pore;3.5796708545852e-07!GO:0000074;regulation of progression through cell cycle;3.71148720145601e-07!GO:0051726;regulation of cell cycle;3.76047928367408e-07!GO:0000323;lytic vacuole;5.18639408064536e-07!GO:0005764;lysosome;5.18639408064536e-07!GO:0003924;GTPase activity;5.25854268735197e-07!GO:0009259;ribonucleotide metabolic process;5.7497361262353e-07!GO:0006333;chromatin assembly or disassembly;5.98625875811265e-07!GO:0042623;ATPase activity, coupled;6.95522843138783e-07!GO:0003779;actin binding;9.4637330416219e-07!GO:0006974;response to DNA damage stimulus;9.71055476960024e-07!GO:0005525;GTP binding;9.80485304659242e-07!GO:0016887;ATPase activity;9.8239096014925e-07!GO:0007265;Ras protein signal transduction;9.96806119266509e-07!GO:0005694;chromosome;1.00849451976436e-06!GO:0016563;transcription activator activity;1.07769660976189e-06!GO:0009060;aerobic respiration;1.15791613230111e-06!GO:0015986;ATP synthesis coupled proton transport;1.15954896292142e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.15954896292142e-06!GO:0006163;purine nucleotide metabolic process;1.26499874688598e-06!GO:0009150;purine ribonucleotide metabolic process;1.43585418799838e-06!GO:0030120;vesicle coat;1.55659833220237e-06!GO:0030662;coated vesicle membrane;1.55659833220237e-06!GO:0048475;coated membrane;1.55659833220237e-06!GO:0030117;membrane coat;1.55659833220237e-06!GO:0042254;ribosome biogenesis and assembly;1.73139108872062e-06!GO:0015629;actin cytoskeleton;1.73613001577833e-06!GO:0050657;nucleic acid transport;1.80794802352214e-06!GO:0051236;establishment of RNA localization;1.80794802352214e-06!GO:0050658;RNA transport;1.80794802352214e-06!GO:0006732;coenzyme metabolic process;1.83820121857332e-06!GO:0009055;electron carrier activity;1.95504122877128e-06!GO:0006403;RNA localization;1.97264907307161e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.32182352895605e-06!GO:0045333;cellular respiration;2.49683983410896e-06!GO:0044427;chromosomal part;2.51964763855399e-06!GO:0016469;proton-transporting two-sector ATPase complex;2.78752104526218e-06!GO:0005839;proteasome core complex (sensu Eukaryota);3.28808902939651e-06!GO:0005770;late endosome;3.389240275388e-06!GO:0045892;negative regulation of transcription, DNA-dependent;3.62510382390233e-06!GO:0016881;acid-amino acid ligase activity;3.82207921340821e-06!GO:0006888;ER to Golgi vesicle-mediated transport;3.82207921340821e-06!GO:0043566;structure-specific DNA binding;3.94546470940323e-06!GO:0065004;protein-DNA complex assembly;3.99274220449692e-06!GO:0031252;leading edge;4.1994382880552e-06!GO:0043065;positive regulation of apoptosis;4.5260113564449e-06!GO:0046649;lymphocyte activation;5.62649196641998e-06!GO:0003714;transcription corepressor activity;6.25082513955626e-06!GO:0005856;cytoskeleton;6.66691201871365e-06!GO:0006099;tricarboxylic acid cycle;6.95928617916029e-06!GO:0046356;acetyl-CoA catabolic process;6.95928617916029e-06!GO:0030216;keratinocyte differentiation;7.09277629167027e-06!GO:0065002;intracellular protein transport across a membrane;7.94261517767974e-06!GO:0009966;regulation of signal transduction;8.89405418598338e-06!GO:0043068;positive regulation of programmed cell death;9.21258688060866e-06!GO:0004386;helicase activity;9.22171070816911e-06!GO:0046034;ATP metabolic process;1.13012514526928e-05!GO:0006164;purine nucleotide biosynthetic process;1.27473335824896e-05!GO:0051789;response to protein stimulus;1.27473335824896e-05!GO:0006986;response to unfolded protein;1.27473335824896e-05!GO:0048471;perinuclear region of cytoplasm;1.4320212359758e-05!GO:0009260;ribonucleotide biosynthetic process;1.46212705476934e-05!GO:0009152;purine ribonucleotide biosynthetic process;1.48373415484895e-05!GO:0009967;positive regulation of signal transduction;1.70113090173461e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.70891382482766e-05!GO:0003697;single-stranded DNA binding;1.74642576410484e-05!GO:0004298;threonine endopeptidase activity;1.75073315565467e-05!GO:0009141;nucleoside triphosphate metabolic process;1.7866075975919e-05!GO:0030695;GTPase regulator activity;1.90596533485803e-05!GO:0032561;guanyl ribonucleotide binding;2.09536010072925e-05!GO:0019001;guanyl nucleotide binding;2.09536010072925e-05!GO:0030532;small nuclear ribonucleoprotein complex;2.48989882600861e-05!GO:0042110;T cell activation;2.53020685715017e-05!GO:0009199;ribonucleoside triphosphate metabolic process;2.54769102379415e-05!GO:0016568;chromatin modification;2.55327577056215e-05!GO:0046930;pore complex;2.67668025096356e-05!GO:0032446;protein modification by small protein conjugation;2.87699197482631e-05!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.15037909200374e-05!GO:0009144;purine nucleoside triphosphate metabolic process;3.15037909200374e-05!GO:0051028;mRNA transport;3.34632669334931e-05!GO:0007010;cytoskeleton organization and biogenesis;3.35822770494908e-05!GO:0008026;ATP-dependent helicase activity;3.35822770494908e-05!GO:0006084;acetyl-CoA metabolic process;3.52824500686452e-05!GO:0006613;cotranslational protein targeting to membrane;3.85001715393502e-05!GO:0016567;protein ubiquitination;3.9924166549744e-05!GO:0048468;cell development;4.05307789124036e-05!GO:0009109;coenzyme catabolic process;4.1043305700596e-05!GO:0000278;mitotic cell cycle;4.39529171397246e-05!GO:0044440;endosomal part;4.60124158927435e-05!GO:0010008;endosome membrane;4.60124158927435e-05!GO:0045786;negative regulation of progression through cell cycle;4.79373885320131e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;4.97446842349661e-05!GO:0006754;ATP biosynthetic process;4.97446842349661e-05!GO:0006753;nucleoside phosphate metabolic process;4.97446842349661e-05!GO:0045259;proton-transporting ATP synthase complex;4.97446842349661e-05!GO:0005083;small GTPase regulator activity;5.19085664847671e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;5.21114783032205e-05!GO:0065009;regulation of a molecular function;5.4873342119636e-05!GO:0044431;Golgi apparatus part;5.49533018342057e-05!GO:0051187;cofactor catabolic process;5.67250008032409e-05!GO:0006334;nucleosome assembly;5.94325199140204e-05!GO:0001533;cornified envelope;5.94325199140204e-05!GO:0000245;spliceosome assembly;6.1071802139548e-05!GO:0009719;response to endogenous stimulus;6.55903139843154e-05!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;6.68498259746826e-05!GO:0004812;aminoacyl-tRNA ligase activity;6.68498259746826e-05!GO:0016875;ligase activity, forming carbon-oxygen bonds;6.68498259746826e-05!GO:0006281;DNA repair;7.85927030664995e-05!GO:0006917;induction of apoptosis;8.42483830877275e-05!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;8.56090075387026e-05!GO:0045321;leukocyte activation;9.29048000413941e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;9.57965130597496e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000104931656261496!GO:0060090;molecular adaptor activity;0.00010823774866143!GO:0006260;DNA replication;0.00010823774866143!GO:0030674;protein binding, bridging;0.000108279358353531!GO:0043038;amino acid activation;0.000113583551433404!GO:0006418;tRNA aminoacylation for protein translation;0.000113583551433404!GO:0043039;tRNA aminoacylation;0.000113583551433404!GO:0031497;chromatin assembly;0.000115244325943053!GO:0009142;nucleoside triphosphate biosynthetic process;0.000126098684832954!GO:0009201;ribonucleoside triphosphate biosynthetic process;0.000126098684832954!GO:0012502;induction of programmed cell death;0.000143521441190247!GO:0016044;membrane organization and biogenesis;0.000152663916633395!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;0.000156081546789083!GO:0009145;purine nucleoside triphosphate biosynthetic process;0.000156081546789083!GO:0016197;endosome transport;0.000164085066173983!GO:0005798;Golgi-associated vesicle;0.000171390866329509!GO:0043623;cellular protein complex assembly;0.000179194503788893!GO:0003724;RNA helicase activity;0.0001809827090935!GO:0016072;rRNA metabolic process;0.000196359457860957!GO:0051168;nuclear export;0.000205282399242389!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00021696417210119!GO:0046983;protein dimerization activity;0.000249665379067056!GO:0006364;rRNA processing;0.000262203721467866!GO:0006417;regulation of translation;0.000271992050719052!GO:0045941;positive regulation of transcription;0.000278315167040739!GO:0006401;RNA catabolic process;0.000286082306360316!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.000289168431635813!GO:0051427;hormone receptor binding;0.000348748672875481!GO:0009615;response to virus;0.000381055578823216!GO:0005885;Arp2/3 protein complex;0.000383450073190809!GO:0006402;mRNA catabolic process;0.000386618932127208!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000387412194926866!GO:0022890;inorganic cation transmembrane transporter activity;0.000389149732048071!GO:0000151;ubiquitin ligase complex;0.0003948621507896!GO:0045893;positive regulation of transcription, DNA-dependent;0.0004179229232256!GO:0033116;ER-Golgi intermediate compartment membrane;0.000440003822090806!GO:0005667;transcription factor complex;0.000485296039462664!GO:0019843;rRNA binding;0.000541247683487184!GO:0008047;enzyme activator activity;0.000545133445441479!GO:0016787;hydrolase activity;0.000590564797001605!GO:0035257;nuclear hormone receptor binding;0.000633821326184965!GO:0051188;cofactor biosynthetic process;0.000786273990644989!GO:0018193;peptidyl-amino acid modification;0.000822835864606027!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000823342590686318!GO:0016740;transferase activity;0.000833137133624446!GO:0030097;hemopoiesis;0.000883558472598389!GO:0002504;antigen processing and presentation of peptide or polysaccharide antigen via MHC class II;0.000888440067206385!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000964078437455467!GO:0051251;positive regulation of lymphocyte activation;0.000984834516293656!GO:0003702;RNA polymerase II transcription factor activity;0.00102214383613004!GO:0007005;mitochondrion organization and biogenesis;0.00104350334039913!GO:0030133;transport vesicle;0.00106018803115784!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00108069355722047!GO:0006979;response to oxidative stress;0.00113226380686349!GO:0015992;proton transport;0.00115603840715056!GO:0002768;immune response-regulating cell surface receptor signaling pathway;0.00117805990367107!GO:0006818;hydrogen transport;0.00121666480103267!GO:0030118;clathrin coat;0.0012496451001171!GO:0006612;protein targeting to membrane;0.00127906642614009!GO:0002764;immune response-regulating signal transduction;0.00131026444362156!GO:0008186;RNA-dependent ATPase activity;0.00135075910432662!GO:0007266;Rho protein signal transduction;0.00135688562109195!GO:0015980;energy derivation by oxidation of organic compounds;0.0013789675766286!GO:0006955;immune response;0.00139748208607981!GO:0005070;SH3/SH2 adaptor activity;0.00139748208607981!GO:0003690;double-stranded DNA binding;0.00141025372345668!GO:0000139;Golgi membrane;0.00143427438901722!GO:0051235;maintenance of localization;0.00143542330836149!GO:0001726;ruffle;0.00149163575184401!GO:0005769;early endosome;0.00159746649110969!GO:0002520;immune system development;0.00161325244032095!GO:0043021;ribonucleoprotein binding;0.00171543482571917!GO:0000087;M phase of mitotic cell cycle;0.00175217738525503!GO:0019904;protein domain specific binding;0.00177769396316285!GO:0030027;lamellipodium;0.00183910120108937!GO:0033673;negative regulation of kinase activity;0.00184224302759487!GO:0006469;negative regulation of protein kinase activity;0.00184224302759487!GO:0006752;group transfer coenzyme metabolic process;0.0018680359989033!GO:0005096;GTPase activator activity;0.00187166202211787!GO:0006399;tRNA metabolic process;0.00189695564971704!GO:0051920;peroxiredoxin activity;0.00193659514377453!GO:0007067;mitosis;0.00193659514377453!GO:0006607;NLS-bearing substrate import into nucleus;0.0019721312523168!GO:0009117;nucleotide metabolic process;0.00199719139211391!GO:0005788;endoplasmic reticulum lumen;0.0020588705841777!GO:0006891;intra-Golgi vesicle-mediated transport;0.0021771832100343!GO:0022403;cell cycle phase;0.00221343113474331!GO:0009893;positive regulation of metabolic process;0.00225452114418791!GO:0001775;cell activation;0.00228707588384351!GO:0030658;transport vesicle membrane;0.00236961504419812!GO:0042613;MHC class II protein complex;0.00240953280471827!GO:0031326;regulation of cellular biosynthetic process;0.00244654482750902!GO:0005938;cell cortex;0.00252900512046294!GO:0009108;coenzyme biosynthetic process;0.00255702202052399!GO:0000786;nucleosome;0.00269109364398045!GO:0005048;signal sequence binding;0.00274528720100389!GO:0008307;structural constituent of muscle;0.0028749103724412!GO:0050851;antigen receptor-mediated signaling pathway;0.00288189878404318!GO:0005791;rough endoplasmic reticulum;0.0029340038177754!GO:0048534;hemopoietic or lymphoid organ development;0.00295926075295181!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00304419151166193!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00304419151166193!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00304419151166193!GO:0002429;immune response-activating cell surface receptor signaling pathway;0.0031065232989864!GO:0030217;T cell differentiation;0.00311130534565261!GO:0002757;immune response-activating signal transduction;0.00334836836092152!GO:0005774;vacuolar membrane;0.00334836836092152!GO:0006414;translational elongation;0.00344175798275977!GO:0051252;regulation of RNA metabolic process;0.00348204283861301!GO:0051348;negative regulation of transferase activity;0.00356205327172137!GO:0016779;nucleotidyltransferase activity;0.00370383879330266!GO:0051128;regulation of cellular component organization and biogenesis;0.00370383879330266!GO:0004004;ATP-dependent RNA helicase activity;0.00370383879330266!GO:0001666;response to hypoxia;0.00386327300443754!GO:0019222;regulation of metabolic process;0.00394123057981464!GO:0001772;immunological synapse;0.00398339882859274!GO:0016301;kinase activity;0.00400930755942159!GO:0045121;lipid raft;0.00400930755942159!GO:0004674;protein serine/threonine kinase activity;0.00414132102854646!GO:0005865;striated muscle thin filament;0.00414458441154256!GO:0008154;actin polymerization and/or depolymerization;0.00420785879421897!GO:0030041;actin filament polymerization;0.00420962214535951!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00437267023334056!GO:0016791;phosphoric monoester hydrolase activity;0.00448272655384665!GO:0031902;late endosome membrane;0.0044962686158576!GO:0050863;regulation of T cell activation;0.00465104198308533!GO:0005912;adherens junction;0.00482265900982905!GO:0043488;regulation of mRNA stability;0.0051099815145005!GO:0043487;regulation of RNA stability;0.0051099815145005!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00517089661383391!GO:0051249;regulation of lymphocyte activation;0.00535058489366373!GO:0030127;COPII vesicle coat;0.00548750117104755!GO:0012507;ER to Golgi transport vesicle membrane;0.00548750117104755!GO:0046822;regulation of nucleocytoplasmic transport;0.00550952283800563!GO:0008283;cell proliferation;0.00551589842814718!GO:0050790;regulation of catalytic activity;0.00553306441828626!GO:0008632;apoptotic program;0.00560636920537419!GO:0022415;viral reproductive process;0.005835922967519!GO:0005741;mitochondrial outer membrane;0.00592565347509321!GO:0050865;regulation of cell activation;0.00616484052053796!GO:0005905;coated pit;0.00620071534763862!GO:0008250;oligosaccharyl transferase complex;0.00658224235797024!GO:0044449;contractile fiber part;0.00675847882793327!GO:0048500;signal recognition particle;0.00679639632558231!GO:0008361;regulation of cell size;0.00695537571891579!GO:0043087;regulation of GTPase activity;0.00707846863657301!GO:0045454;cell redox homeostasis;0.00726305443892159!GO:0016049;cell growth;0.00763051042841614!GO:0030134;ER to Golgi transport vesicle;0.00763051042841614!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00765919726846095!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00780222534246975!GO:0050870;positive regulation of T cell activation;0.00785710391652543!GO:0005813;centrosome;0.0082494232575288!GO:0031968;organelle outer membrane;0.00832009811764707!GO:0030660;Golgi-associated vesicle membrane;0.008440534050286!GO:0002521;leukocyte differentiation;0.00869746127020633!GO:0006611;protein export from nucleus;0.00879916210511458!GO:0035258;steroid hormone receptor binding;0.00896436284481218!GO:0005762;mitochondrial large ribosomal subunit;0.00900394070618632!GO:0000315;organellar large ribosomal subunit;0.00900394070618632!GO:0051087;chaperone binding;0.00900947152779784!GO:0017022;myosin binding;0.00900947152779784!GO:0032940;secretion by cell;0.00914125544987927!GO:0008139;nuclear localization sequence binding;0.00922877689184177!GO:0016126;sterol biosynthetic process;0.00941178238412251!GO:0031325;positive regulation of cellular metabolic process;0.00942385840656769!GO:0030433;ER-associated protein catabolic process;0.0102030035931422!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0102030035931422!GO:0030867;rough endoplasmic reticulum membrane;0.0104782406218855!GO:0019867;outer membrane;0.0105453770948127!GO:0051238;sequestering of metal ion;0.0105550466103167!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.010698136343606!GO:0030132;clathrin coat of coated pit;0.0109155727032897!GO:0006650;glycerophospholipid metabolic process;0.0110787864764759!GO:0051336;regulation of hydrolase activity;0.0113109445081696!GO:0005862;muscle thin filament tropomyosin;0.0113834765405417!GO:0006091;generation of precursor metabolites and energy;0.0116459555104733!GO:0008234;cysteine-type peptidase activity;0.0117118418344425!GO:0004576;oligosaccharyl transferase activity;0.0117160984442472!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0118496352326636!GO:0009889;regulation of biosynthetic process;0.0118651084493517!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0119084830057727!GO:0015399;primary active transmembrane transporter activity;0.0119084830057727!GO:0030098;lymphocyte differentiation;0.0120545471077393!GO:0005057;receptor signaling protein activity;0.0121493037641852!GO:0045045;secretory pathway;0.0121493037641852!GO:0005765;lysosomal membrane;0.0123459325573095!GO:0003729;mRNA binding;0.0123830325572228!GO:0004721;phosphoprotein phosphatase activity;0.0130081469800568!GO:0051056;regulation of small GTPase mediated signal transduction;0.0130581427844474!GO:0031032;actomyosin structure organization and biogenesis;0.0131331491740612!GO:0030119;AP-type membrane coat adaptor complex;0.0132568461987439!GO:0030031;cell projection biogenesis;0.0135176592620542!GO:0044437;vacuolar part;0.0135264272244386!GO:0035035;histone acetyltransferase binding;0.0140392772758746!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0144889323134079!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0146869291590453!GO:0030131;clathrin adaptor complex;0.0146869291590453!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0148996769326833!GO:0045047;protein targeting to ER;0.0148996769326833!GO:0016859;cis-trans isomerase activity;0.0149643132579954!GO:0016363;nuclear matrix;0.0151634820520819!GO:0043292;contractile fiber;0.0153436365998901!GO:0000059;protein import into nucleus, docking;0.0153436365998901!GO:0030663;COPI coated vesicle membrane;0.0155014071036122!GO:0030126;COPI vesicle coat;0.0155014071036122!GO:0045792;negative regulation of cell size;0.0155222373056522!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0156995396055157!GO:0046578;regulation of Ras protein signal transduction;0.0161008957318496!GO:0030176;integral to endoplasmic reticulum membrane;0.016255432143977!GO:0030521;androgen receptor signaling pathway;0.0162894496573426!GO:0003746;translation elongation factor activity;0.0163241751908427!GO:0009607;response to biotic stimulus;0.0165279574004719!GO:0042113;B cell activation;0.0169326311491967!GO:0005637;nuclear inner membrane;0.0170755546495142!GO:0051301;cell division;0.0172010078215518!GO:0030518;steroid hormone receptor signaling pathway;0.0178081969471101!GO:0030384;phosphoinositide metabolic process;0.0179000205140098!GO:0008312;7S RNA binding;0.0181480622934464!GO:0051098;regulation of binding;0.018470476879276!GO:0042101;T cell receptor complex;0.018470476879276!GO:0006984;ER-nuclear signaling pathway;0.0188725886648485!GO:0016584;nucleosome positioning;0.0189131406124282!GO:0016853;isomerase activity;0.0191245482061739!GO:0004860;protein kinase inhibitor activity;0.0194012854783174!GO:0031072;heat shock protein binding;0.019640007831268!GO:0050852;T cell receptor signaling pathway;0.0199904761667218!GO:0030308;negative regulation of cell growth;0.0200595011118376!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.020260115629339!GO:0005657;replication fork;0.0204886668911486!GO:0005099;Ras GTPase activator activity;0.0206066345122077!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.0208680934204267!GO:0001558;regulation of cell growth;0.0209199713099884!GO:0051101;regulation of DNA binding;0.0218650537108136!GO:0008654;phospholipid biosynthetic process;0.0219650411663715!GO:0051223;regulation of protein transport;0.0224319149939777!GO:0043681;protein import into mitochondrion;0.0231046788512484!GO:0006468;protein amino acid phosphorylation;0.0232416349758151!GO:0051338;regulation of transferase activity;0.02335294180735!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0236834826563686!GO:0019210;kinase inhibitor activity;0.0239381281608254!GO:0051262;protein tetramerization;0.0242571096513807!GO:0048487;beta-tubulin binding;0.0245856539879741!GO:0032395;MHC class II receptor activity;0.0247085180424343!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0248505102100662!GO:0015002;heme-copper terminal oxidase activity;0.0248505102100662!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0248505102100662!GO:0004129;cytochrome-c oxidase activity;0.0248505102100662!GO:0000314;organellar small ribosomal subunit;0.0248505102100662!GO:0005763;mitochondrial small ribosomal subunit;0.0248505102100662!GO:0030137;COPI-coated vesicle;0.0248883736422466!GO:0006897;endocytosis;0.0255585875308021!GO:0010324;membrane invagination;0.0255585875308021!GO:0008637;apoptotic mitochondrial changes;0.0258495364004554!GO:0047485;protein N-terminus binding;0.0259662889173769!GO:0005684;U2-dependent spliceosome;0.026576891935944!GO:0004715;non-membrane spanning protein tyrosine kinase activity;0.0266255867694191!GO:0030016;myofibril;0.0268356109214454!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0269234051263995!GO:0045113;regulation of integrin biosynthetic process;0.0273115202820556!GO:0045112;integrin biosynthetic process;0.0273115202820556!GO:0043492;ATPase activity, coupled to movement of substances;0.0273829610355484!GO:0006376;mRNA splice site selection;0.0278216872353531!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0278216872353531!GO:0006695;cholesterol biosynthetic process;0.0283811037848504!GO:0006892;post-Golgi vesicle-mediated transport;0.0288300221335517!GO:0005815;microtubule organizing center;0.0301403913707225!GO:0051283;negative regulation of sequestering of calcium ion;0.030577518128835!GO:0051282;regulation of sequestering of calcium ion;0.030577518128835!GO:0051209;release of sequestered calcium ion into cytosol;0.030577518128835!GO:0043022;ribosome binding;0.0305977118728172!GO:0030125;clathrin vesicle coat;0.0305977118728172!GO:0030665;clathrin coated vesicle membrane;0.0305977118728172!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0305977118728172!GO:0008629;induction of apoptosis by intracellular signals;0.0307748811405511!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0308444155763647!GO:0042805;actinin binding;0.031011940002704!GO:0017166;vinculin binding;0.0310956920073921!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.031506768168975!GO:0006405;RNA export from nucleus;0.0317172631028705!GO:0008287;protein serine/threonine phosphatase complex;0.0318140447627991!GO:0003682;chromatin binding;0.0320993192789208!GO:0000279;M phase;0.0331053279988922!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.0331053279988922!GO:0009897;external side of plasma membrane;0.0332347784397351!GO:0051049;regulation of transport;0.033323136417085!GO:0004722;protein serine/threonine phosphatase activity;0.0333391400834626!GO:0003711;transcription elongation regulator activity;0.0341818691130681!GO:0018196;peptidyl-asparagine modification;0.035323795962934!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.035323795962934!GO:0006643;membrane lipid metabolic process;0.0354076321727753!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0354076321727753!GO:0033043;regulation of organelle organization and biogenesis;0.0354076321727753!GO:0051059;NF-kappaB binding;0.0360099633991099!GO:0043433;negative regulation of transcription factor activity;0.0360099633991099!GO:0016311;dephosphorylation;0.0362115482100092!GO:0031901;early endosome membrane;0.0366213699534593!GO:0051289;protein homotetramerization;0.0366213699534593!GO:0032594;protein transport within lipid bilayer;0.0366213699534593!GO:0032907;transforming growth factor-beta3 production;0.0366213699534593!GO:0032596;protein transport into lipid raft;0.0366213699534593!GO:0032910;regulation of transforming growth factor-beta3 production;0.0366213699534593!GO:0032595;B cell receptor transport within lipid bilayer;0.0366213699534593!GO:0033606;chemokine receptor transport within lipid bilayer;0.0366213699534593!GO:0032600;chemokine receptor transport out of lipid raft;0.0366213699534593!GO:0032599;protein transport out of lipid raft;0.0366213699534593!GO:0032597;B cell receptor transport into lipid raft;0.0366213699534593!GO:0032913;negative regulation of transforming growth factor-beta3 production;0.0366213699534593!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0368000803464711!GO:0002443;leukocyte mediated immunity;0.0368811877958043!GO:0030832;regulation of actin filament length;0.0372354403341899!GO:0008022;protein C-terminus binding;0.0373194325242196!GO:0051325;interphase;0.0374025786989723!GO:0043549;regulation of kinase activity;0.0381475925381622!GO:0051090;regulation of transcription factor activity;0.0390715791003176!GO:0031529;ruffle organization and biogenesis;0.0390715791003176!GO:0006595;polyamine metabolic process;0.0390715791003176!GO:0043621;protein self-association;0.039089803283293!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0393858118431883!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0393858118431883!GO:0045730;respiratory burst;0.0399968087260315!GO:0008538;proteasome activator activity;0.0412019187340974!GO:0005832;chaperonin-containing T-complex;0.0421747645548664!GO:0019902;phosphatase binding;0.0428745627339523!GO:0033157;regulation of intracellular protein transport;0.0430041487751082!GO:0042306;regulation of protein import into nucleus;0.0430041487751082!GO:0051092;activation of NF-kappaB transcription factor;0.0433924618343975!GO:0030017;sarcomere;0.0438198786213428!GO:0001725;stress fiber;0.0441438461119898!GO:0032432;actin filament bundle;0.0441438461119898!GO:0005869;dynactin complex;0.044612090683304!GO:0032535;regulation of cellular component size;0.0447693086979932!GO:0045947;negative regulation of translational initiation;0.0448627581483325!GO:0051146;striated muscle cell differentiation;0.0452268454300999!GO:0000303;response to superoxide;0.0455842870416066!GO:0007006;mitochondrial membrane organization and biogenesis;0.0456136970533239!GO:0008286;insulin receptor signaling pathway;0.0460529608323168!GO:0004197;cysteine-type endopeptidase activity;0.0462835015256993!GO:0040029;regulation of gene expression, epigenetic;0.0468988389688261!GO:0032508;DNA duplex unwinding;0.0477360902679006!GO:0032392;DNA geometric change;0.0477360902679006!GO:0005913;cell-cell adherens junction;0.0479451025379716!GO:0009261;ribonucleotide catabolic process;0.0479451025379716!GO:0030833;regulation of actin filament polymerization;0.047960431679876!GO:0006693;prostaglandin metabolic process;0.0485577485598639!GO:0006692;prostanoid metabolic process;0.0485577485598639!GO:0006672;ceramide metabolic process;0.0485577485598639!GO:0007009;plasma membrane organization and biogenesis;0.0485577485598639!GO:0050853;B cell receptor signaling pathway;0.0487436490278831!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0492078758779103!GO:0002253;activation of immune response;0.0497997191943892
|sample_id=10047
|sample_note=
|sample_sex=mixed
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=tonsil
|top_motifs=TBP:3.25904758314;POU2F1..3:3.15661160874;POU5F1:3.02764869432;TFCP2:2.40557584753;SNAI1..3:2.31166130602;ZEB1:2.2223605852;MYOD1:1.76368113507;LMO2:1.76026503044;TLX2:1.73989147259;MEF2{A,B,C,D}:1.6783608122;SP1:1.66779489656;ZNF148:1.55830813459;IRF7:1.55774722686;ETS1,2:1.51161667186;ELF1,2,4:1.48969265143;RBPJ:1.36576048065;XCPE1{core}:1.36537120521;TBX4,5:1.35181490573;FOX{F1,F2,J1}:1.30097732422;VSX1,2:1.24063448481;EP300:1.18634386011;TFAP4:1.16859923136;TGIF1:1.10298637225;SOX5:1.08111433529;FOXO1,3,4:1.01677800204;SPI1:0.984094762917;MAZ:0.965111049713;IRF1,2:0.964330620424;HMX1:0.963065999204;T:0.95487529113;NANOG:0.936450436904;RUNX1..3:0.924254884836;ZNF423:0.917888818408;FOXA2:0.909483696152;TFAP2{A,C}:0.901436728646;FOX{D1,D2}:0.897821532045;SPIB:0.822359955175;PAX6:0.819398010391;NKX2-3_NKX2-5:0.778504511719;RXRA_VDR{dimer}:0.768869537336;RREB1:0.759658294494;SPZ1:0.750214128182;MYFfamily:0.692703635526;SRF:0.661622496665;NFATC1..3:0.656108320637;TP53:0.653845028787;HAND1,2:0.652792979443;PATZ1:0.647604366091;ESR1:0.63204407007;MTF1:0.591672713233;PBX1:0.582772506972;FOXN1:0.556375539694;SMAD1..7,9:0.551259474046;MED-1{core}:0.509964604644;GLI1..3:0.432509710817;NFY{A,B,C}:0.428207173415;TAL1_TCF{3,4,12}:0.423192121232;DMAP1_NCOR{1,2}_SMARC:0.405307437536;ATF2:0.399361934451;NKX2-1,4:0.38102370452;ATF6:0.377863382528;EGR1..3:0.355758085393;ZNF238:0.354755639206;JUN:0.354578916405;PAX3,7:0.341934285861;TLX1..3_NFIC{dimer}:0.328296429485;SREBF1,2:0.315661160128;PDX1:0.31248004044;BPTF:0.307212096513;GTF2I:0.29730817014;GCM1,2:0.29283928021;NFKB1_REL_RELA:0.272839035842;EBF1:0.257759116413;SOX2:0.255996586088;GTF2A1,2:0.248192813028;SOX{8,9,10}:0.242825305778;GATA6:0.227765533967;HIC1:0.222887369256;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.210557814304;NHLH1,2:0.202053879635;NKX6-1,2:0.191655310407;NR5A1,2:0.188807544652;BREu{core}:0.178583233376;AR:0.16616261883;CRX:0.156681975087;CDC5L:0.14742160229;NKX3-2:0.0912891360545;ZFP161:0.0896745410784;MTE{core}:0.0868166758079;CUX2:0.0782637120638;MZF1:0.0132274882417;STAT1,3:-0.000931883244136;GFI1:-0.0134037276277;TEAD1:-0.0360953469008;LEF1_TCF7_TCF7L1,2:-0.0472631147951;FOS_FOS{B,L1}_JUN{B,D}:-0.0508783087069;RORA:-0.0651104335119;PITX1..3:-0.071409863106;E2F1..5:-0.0789639187634;STAT2,4,6:-0.0834888355918;DBP:-0.088537882293;ZNF143:-0.103330868264;ALX4:-0.11051232341;MYBL2:-0.111193702367;TFAP2B:-0.128492030643;MAFB:-0.135670137093;PRDM1:-0.153665186873;TOPORS:-0.187073293368;NR1H4:-0.198324893677;OCT4_SOX2{dimer}:-0.2441356764;PAX5:-0.245936320186;FOSL2:-0.265522547279;HBP1_HMGB_SSRP1_UBTF:-0.26724391641;REST:-0.274369463415;AIRE:-0.287582002557;GATA4:-0.288570481809;HNF4A_NR2F1,2:-0.301079675524;RFX2..5_RFXANK_RFXAP:-0.301741162136;ELK1,4_GABP{A,B1}:-0.310612447954;HES1:-0.312815319348;NFIL3:-0.317954519604;ZIC1..3:-0.323553808645;ZNF384:-0.323591211253;CEBPA,B_DDIT3:-0.332083969276;bHLH_family:-0.352296810091;HSF1,2:-0.360369939387;HIF1A:-0.380003511407;FOXP1:-0.381053690518;NRF1:-0.415139399978;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.416750809087;ATF4:-0.421168185261;ADNP_IRX_SIX_ZHX:-0.424766171723;FOX{I1,J2}:-0.434197012325;NFIX:-0.444169869931;PAX2:-0.45205149892;POU6F1:-0.479380285975;IKZF1:-0.487983887279;GFI1B:-0.500373552421;FOXL1:-0.505103868147;HNF1A:-0.509609636853;NFE2:-0.533225648676;BACH2:-0.547842793036;ATF5_CREB3:-0.554796781906;NANOG{mouse}:-0.564778789838;FOXQ1:-0.575622561394;MYB:-0.62272082476;PRRX1,2:-0.633651662912;TFDP1:-0.639162456864;IKZF2:-0.652905430502;POU1F1:-0.664600558916;FOXM1:-0.672037457584;HLF:-0.674055307512;CREB1:-0.691418356374;XBP1:-0.707273362887;HOX{A4,D4}:-0.772080572217;HOX{A6,A7,B6,B7}:-0.772410814517;KLF4:-0.813825412898;LHX3,4:-0.833708084943;NFE2L2:-0.846138130078;ESRRA:-0.879572128668;NFE2L1:-0.890034376591;ZBTB6:-0.91505815991;PAX1,9:-0.916321309188;SOX17:-0.944393023166;FOXP3:-0.947959517911;YY1:-0.956484527884;AHR_ARNT_ARNT2:-0.968574072847;GZF1:-0.987363660795;NR6A1:-1.0153365996;CDX1,2,4:-1.05541611097;RXR{A,B,G}:-1.07787008344;STAT5{A,B}:-1.08808560207;RFX1:-1.14118445605;NR3C1:-1.19983761507;POU3F1..4:-1.25712135847;PPARG:-1.25806262253;HOXA9_MEIS1:-1.32300468673;EN1,2:-1.42895426893;ARID5B:-1.46695334411;NKX3-1:-1.49867723952;ALX1:-1.51655056738;HOX{A5,B5}:-1.52677984198;UFEwm:-1.56658044966;ZBTB16:-1.57488056846;ONECUT1,2:-1.57697140625;NKX2-2,8:-1.59066022876;EVI1:-1.72273358353;FOXD3:-1.92337115335;TEF:-2.07726665989;PAX8:-2.07926762392;HMGA1,2:-2.13187491054;PAX4:-2.24493340177
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10047-101G2;search_select_hide=table117:FF:10047-101G2
}}
}}

Latest revision as of 12:17, 3 June 2020

Name:tonsil, adult, pool1
Species:Human (Homo sapiens)
Library ID:CNhs10654
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuetonsil
dev stage22-61 years old adult
sexmixed
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyClontech
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number9120165A
catalog numberCat:636587
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004996
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs10654 CAGE DRX008752 DRR009624
Accession ID Hg19

Library idBAMCTSS
CNhs10654 DRZ001049 DRZ002434
Accession ID Hg38

Library idBAMCTSS
CNhs10654 DRZ012399 DRZ013784
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0.0549
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0742
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.0375
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.0283
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340.022
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40.00951
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0.0283
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.124
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0.0283
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0.0283
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0.0249
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0283
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.0283
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.162
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.182
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0.0799
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0.349
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.173
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.303
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.0283
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0.187
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.00251
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0.0283
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0059
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0.126
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0.0283
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary1.906
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0492
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.633
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.0799
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140.0283
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0.147
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.223
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0.0283
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.416
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.0799
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0.575
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.0416
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.0799
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0.0416
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0283
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.039
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0.44
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.0283
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.08
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0.0283
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.0549
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.0283
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.0283
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.273
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.0142
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.147
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0.104
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0.0416
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0.0549
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0.0549
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0.418
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.642
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0.45
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0.0283
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0.0283
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0.0549
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0.0283
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0.0283
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0.0283
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0.0283
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0.0283
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0.126
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10654

Jaspar motifP-value
MA0002.20.00295
MA0003.10.217
MA0004.10.367
MA0006.10.213
MA0007.10.396
MA0009.10.218
MA0014.10.452
MA0017.10.21
MA0018.20.262
MA0019.10.302
MA0024.10.96
MA0025.10.49
MA0027.10.917
MA0028.10.215
MA0029.10.618
MA0030.10.0213
MA0031.10.175
MA0035.20.885
MA0038.10.558
MA0039.20.00284
MA0040.10.522
MA0041.10.0731
MA0042.10.402
MA0043.10.133
MA0046.10.997
MA0047.20.0351
MA0048.18.54712e-4
MA0050.12.13983e-6
MA0051.10.0214
MA0052.11.74234e-8
MA0055.10.0189
MA0057.10.27
MA0058.10.244
MA0059.10.0311
MA0060.10.182
MA0061.10.64
MA0062.20.294
MA0065.20.91
MA0066.10.615
MA0067.10.143
MA0068.10.172
MA0069.10.406
MA0070.10.931
MA0071.10.0412
MA0072.10.571
MA0073.10.914
MA0074.10.39
MA0076.10.831
MA0077.10.768
MA0078.10.313
MA0079.20.0221
MA0080.21.64911e-11
MA0081.10.0675
MA0083.10.186
MA0084.10.664
MA0087.10.147
MA0088.10.209
MA0090.10.283
MA0091.10.532
MA0092.10.946
MA0093.10.39
MA0099.22.90643e-6
MA0100.10.294
MA0101.10.886
MA0102.20.597
MA0103.14.66511e-5
MA0104.20.0466
MA0105.10.0927
MA0106.10.974
MA0107.10.76
MA0108.24.61026e-23
MA0111.10.737
MA0112.20.339
MA0113.10.233
MA0114.10.846
MA0115.10.854
MA0116.10.894
MA0117.10.333
MA0119.10.244
MA0122.10.0763
MA0124.10.378
MA0125.10.747
MA0131.10.391
MA0135.10.0489
MA0136.12.32695e-14
MA0137.20.234
MA0138.20.679
MA0139.10.687
MA0140.10.566
MA0141.10.038
MA0142.10.993
MA0143.10.294
MA0144.10.296
MA0145.10.0177
MA0146.10.176
MA0147.10.0284
MA0148.10.405
MA0149.10.362
MA0150.10.00469
MA0152.10.102
MA0153.10.799
MA0154.10.125
MA0155.10.559
MA0156.18.2479e-10
MA0157.10.434
MA0159.10.829
MA0160.10.361
MA0162.10.842
MA0163.10.0248
MA0164.10.418
MA0258.10.973
MA0259.10.0983



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs10654

Novel motifP-value
10.497
100.0428
1000.0947
1010.913
1020.634
1030.649
1040.698
1050.0909
1060.365
1070.161
1080.811
1090.972
110.841
1100.617
1110.333
1120.201
1130.0548
1140.156
1150.596
1160.0973
1170.339
1180.0338
1190.724
120.595
1200.17
1210.0595
1220.177
1230.368
1240.515
1250.907
1260.146
1270.257
1280.612
1290.861
130.272
1300.375
1310.587
1320.261
1334.73588e-4
1340.00157
1350.0246
1360.964
1370.249
1380.968
1390.551
140.425
1400.561
1410.324
1420.596
1430.947
1440.0518
1450.415
1460.0133
1470.826
1480.841
1490.0871
150.236
1500.89
1510.507
1520.109
1530.324
1540.56
1550.618
1560.916
1570.204
1580.969
1590.615
160.833
1600.673
1610.88
1620.698
1630.447
1640.0243
1650.697
1660.914
1670.0446
1682.72809e-4
1690.168
170.719
180.108
190.675
20.028
200.12
210.726
220.327
230.452
240.781
250.477
260.717
270.144
280.843
290.232
30.872
300.0207
310.947
320.0747
330.689
340.322
350.23
360.0989
370.625
380.579
390.911
40.958
400.878
410.754
420.933
430.968
440.903
450.0178
460.795
470.75
480.944
490.826
50.811
500.345
510.966
520.238
530.286
540.849
550.639
560.76
570.294
580.483
590.336
60.309
600.303
610.707
620.837
630.487
640.955
650.526
660.528
670.47
680.724
690.901
70.522
700.239
710.273
720.0609
730.762
740.105
750.342
760.0628
770.226
780.617
790.145
80.604
807.56823e-5
810.771
820.9
830.728
840.111
850.945
860.788
870.56
880.812
890.666
90.173
900.0755
910.412
920.47
930.999
940.341
950.802
960.909
970.54
980.31
990.382



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs10654


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0002372 (tonsil)
0006562 (pharynx)
0000033 (head)
0000479 (tissue)
0001007 (digestive system)
0000344 (mucosa)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004923 (organ component layer)
0004921 (subdivision of digestive tract)
0000161 (orifice)
0001444 (subdivision of head)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0001961 (mucosa-associated lymphoid tissue)
0001744 (lymphoid tissue)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001004 (respiratory system)
0002465 (lymphoid system)
0000153 (anterior region of body)
0007811 (craniocervical region)
0000165 (mouth)
0000166 (oral opening)
0001042 (chordate pharynx)
0002193 (hemolymphoid system)
0002405 (immune system)
0001735 (tonsillar ring)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010047 (human tonsil - adult sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

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