FF:10054-101G9: Difference between revisions

Latest revision as of 12:18, 3 June 2020

Name:	eye, fetal, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs11762
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	eye
dev stage	36 weeks fetus
sex	female
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Biochain
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	B210179
catalog number	Cat:RtHFN: Whole Eye
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004793

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11762		CAGE		DRX008655		DRR009527

Accession ID Hg19

Library id		BAM		CTSS
CNhs11762		DRZ000952		DRZ002337

Accession ID Hg38

Library id		BAM		CTSS
CNhs11762		DRZ012302		DRZ013687

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0.0885
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.00394
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.318
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0.0442
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0.0885
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0.0885
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.28
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.0885
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0.0885
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.642
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.00326
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0991
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.0885
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.0885
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.281
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0.0885
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0575
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0.0885
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0.0885
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.00372
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.162
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.372
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0885
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0.0885
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0.162
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.278
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0.162
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.0929
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0.0885
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.226
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.542
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0.28
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.0885
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0.162
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.051
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0.28
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0.0442
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.495
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.286
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.724
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.513
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.607
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.162
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.118
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0.118
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0.162
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0.162
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	1.057
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0.304
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0.162
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0.0885
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.759
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.0559
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0.0885
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11762

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	5.5093e-4
MA0003.1	MA0003.1	0.693
MA0004.1	MA0004.1	0.0375
MA0006.1	MA0006.1	0.746
MA0007.1	MA0007.1	0.221
MA0009.1	MA0009.1	0.0831
MA0014.1	MA0014.1	0.263
MA0017.1	MA0017.1	0.0637
MA0018.2	MA0018.2	0.779
MA0019.1	MA0019.1	0.169
MA0024.1	MA0024.1	0.192
MA0025.1	MA0025.1	0.945
MA0027.1	MA0027.1	0.797
MA0028.1	MA0028.1	2.75725e-5
MA0029.1	MA0029.1	0.179
MA0030.1	MA0030.1	0.213
MA0031.1	MA0031.1	0.97
MA0035.2	MA0035.2	0.271
MA0038.1	MA0038.1	0.283
MA0039.2	MA0039.2	0.202
MA0040.1	MA0040.1	0.729
MA0041.1	MA0041.1	0.127
MA0042.1	MA0042.1	0.303
MA0043.1	MA0043.1	0.0594
MA0046.1	MA0046.1	0.0517
MA0047.2	MA0047.2	0.405
MA0048.1	MA0048.1	0.0798
MA0050.1	MA0050.1	5.00189e-5
MA0051.1	MA0051.1	0.00197
MA0052.1	MA0052.1	1.68873e-6
MA0055.1	MA0055.1	3.45726e-4
MA0057.1	MA0057.1	0.817
MA0058.1	MA0058.1	0.0317
MA0059.1	MA0059.1	0.0115
MA0060.1	MA0060.1	0.498
MA0061.1	MA0061.1	1.77866e-4
MA0062.2	MA0062.2	1.96295e-10
MA0065.2	MA0065.2	0.0194
MA0066.1	MA0066.1	0.186
MA0067.1	MA0067.1	0.463
MA0068.1	MA0068.1	0.0047
MA0069.1	MA0069.1	0.787
MA0070.1	MA0070.1	0.959
MA0071.1	MA0071.1	0.579
MA0072.1	MA0072.1	0.558
MA0073.1	MA0073.1	0.386
MA0074.1	MA0074.1	0.876
MA0076.1	MA0076.1	3.79255e-6
MA0077.1	MA0077.1	0.953
MA0078.1	MA0078.1	0.454
MA0079.2	MA0079.2	0.869
MA0080.2	MA0080.2	8.92928e-9
MA0081.1	MA0081.1	0.00557
MA0083.1	MA0083.1	0.692
MA0084.1	MA0084.1	0.414
MA0087.1	MA0087.1	0.235
MA0088.1	MA0088.1	0.0118
MA0090.1	MA0090.1	0.917
MA0091.1	MA0091.1	0.212
MA0092.1	MA0092.1	0.789
MA0093.1	MA0093.1	0.0434
MA0099.2	MA0099.2	1.01185e-20
MA0100.1	MA0100.1	0.0898
MA0101.1	MA0101.1	2.93549e-5
MA0102.2	MA0102.2	0.0857
MA0103.1	MA0103.1	0.722
MA0104.2	MA0104.2	0.0219
MA0105.1	MA0105.1	2.37162e-6
MA0106.1	MA0106.1	0.00793
MA0107.1	MA0107.1	7.01144e-5
MA0108.2	MA0108.2	2.20399e-21
MA0111.1	MA0111.1	0.693
MA0112.2	MA0112.2	0.0665
MA0113.1	MA0113.1	0.868
MA0114.1	MA0114.1	0.0131
MA0115.1	MA0115.1	0.121
MA0116.1	MA0116.1	0.0141
MA0117.1	MA0117.1	0.408
MA0119.1	MA0119.1	0.176
MA0122.1	MA0122.1	0.461
MA0124.1	MA0124.1	0.68
MA0125.1	MA0125.1	0.117
MA0131.1	MA0131.1	0.45
MA0135.1	MA0135.1	0.0569
MA0136.1	MA0136.1	1.4252e-13
MA0137.2	MA0137.2	0.978
MA0138.2	MA0138.2	0.00508
MA0139.1	MA0139.1	0.197
MA0140.1	MA0140.1	0.31
MA0141.1	MA0141.1	0.0882
MA0142.1	MA0142.1	0.064
MA0143.1	MA0143.1	0.785
MA0144.1	MA0144.1	0.529
MA0145.1	MA0145.1	0.716
MA0146.1	MA0146.1	0.00747
MA0147.1	MA0147.1	0.00623
MA0148.1	MA0148.1	0.414
MA0149.1	MA0149.1	0.00837
MA0150.1	MA0150.1	6.66294e-7
MA0152.1	MA0152.1	0.381
MA0153.1	MA0153.1	0.997
MA0154.1	MA0154.1	0.0783
MA0155.1	MA0155.1	0.515
MA0156.1	MA0156.1	1.14165e-12
MA0157.1	MA0157.1	0.287
MA0159.1	MA0159.1	0.103
MA0160.1	MA0160.1	0.0443
MA0162.1	MA0162.1	0.47
MA0163.1	MA0163.1	4.64551e-7
MA0164.1	MA0164.1	0.287
MA0258.1	MA0258.1	0.25
MA0259.1	MA0259.1	0.326

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11762

Novel motif	Logo	P-value
1	1	0.0354
10	10	0.0134
100	100	0.368
101	101	0.916
102	102	0.837
103	103	0.173
104	104	0.591
105	105	0.371
106	106	0.441
107	107	0.829
108	108	0.815
109	109	0.0126
11	11	0.036
110	110	0.0913
111	111	0.00667
112	112	0.846
113	113	0.0335
114	114	0.103
115	115	0.135
116	116	0.816
117	117	0.00254
118	118	0.0315
119	119	0.376
12	12	0.861
120	120	0.448
121	121	0.763
122	122	0.919
123	123	0.0107
124	124	0.444
125	125	0.69
126	126	0.112
127	127	0.629
128	128	0.83
129	129	0.324
13	13	0.00372
130	130	0.912
131	131	0.227
132	132	0.194
133	133	0.0493
134	134	0.476
135	135	0.819
136	136	0.046
137	137	0.494
138	138	0.334
139	139	0.596
14	14	0.748
140	140	0.4
141	141	0.145
142	142	0.83
143	143	0.00503
144	144	0.708
145	145	0.466
146	146	0.336
147	147	0.146
148	148	0.213
149	149	0.768
15	15	0.0116
150	150	0.304
151	151	0.702
152	152	0.122
153	153	0.795
154	154	0.768
155	155	0.119
156	156	0.792
157	157	0.274
158	158	0.215
159	159	0.961
16	16	0.661
160	160	0.523
161	161	0.153
162	162	0.349
163	163	0.759
164	164	0.00696
165	165	0.613
166	166	0.245
167	167	0.0351
168	168	0.937
169	169	0.00934
17	17	0.268
18	18	0.138
19	19	0.878
2	2	0.258
20	20	0.0327
21	21	0.183
22	22	0.446
23	23	0.731
24	24	0.185
25	25	0.406
26	26	0.00212
27	27	0.769
28	28	0.569
29	29	0.00289
3	3	0.0252
30	30	0.0559
31	31	0.759
32	32	0.0376
33	33	0.0408
34	34	0.466
35	35	0.672
36	36	0.114
37	37	0.0341
38	38	0.478
39	39	0.902
4	4	0.848
40	40	0.135
41	41	0.117
42	42	0.0815
43	43	0.175
44	44	0.934
45	45	0.708
46	46	0.148
47	47	0.0361
48	48	0.081
49	49	0.133
5	5	0.355
50	50	0.608
51	51	0.518
52	52	0.682
53	53	0.778
54	54	0.668
55	55	0.138
56	56	0.705
57	57	0.14
58	58	0.434
59	59	0.859
6	6	0.859
60	60	0.43
61	61	0.0104
62	62	0.378
63	63	0.246
64	64	0.472
65	65	0.742
66	66	0.0282
67	67	0.575
68	68	0.24
69	69	0.877
7	7	0.104
70	70	0.11
71	71	0.00604
72	72	0.308
73	73	0.0171
74	74	0.26
75	75	0.00242
76	76	0.039
77	77	0.773
78	78	0.0966
79	79	0.781
8	8	0.0586
80	80	0.736
81	81	0.498
82	82	0.918
83	83	0.927
84	84	0.423
85	85	0.676
86	86	0.158
87	87	0.00166
88	88	0.5
89	89	0.845
9	9	0.823
90	90	0.0801
91	91	0.787
92	92	0.803
93	93	0.921
94	94	0.0346
95	95	0.0129
96	96	0.43
97	97	0.793
98	98	0.256
99	99	0.371

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11762

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010054 human eye - fetal sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000970 (eye)
0000479 (tissue)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000020 (sense organ)
0001032 (sensory system)
0002104 (visual system)
0004456 (entire sense organ system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000999 (fetal tissue sample)
0000004 (tissue sample)
0010054 (human eye - fetal sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
-|id=FF:10054-101G9
+|DRA_sample_Accession=CAGE@SAMD00004793
-|name=eye, fetal, donor1
+|accession_numbers=CAGE;DRX008655;DRR009527;DRZ000952;DRZ002337;DRZ012302;DRZ013687
-|sample_id=10054
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000970,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000020,UBERON:0001032,UBERON:0002104,UBERON:0004456
-|rna_tube_id=101G9
-|rna_box=101
-|rna_position=G9
-|sample_cell_lot=NA
-|sample_cell_catalog=NA
-|sample_company=Biochain
-|rna_lot_number=B210179
-|rna_catalog_number=Cat:RtHFN: Whole Eye
-|sample_species=Human (Homo sapiens)
-|sample_strain=
-|sample_dev_stage=36 weeks fetus
-|sample_tissue=eye
-|sample_donor(cell lot)=1
-|sample_sex=female
-|sample_age=
-|sample_ethnicity=A?
-|rna_rin=8.5
-|rna_od260/230=
-|rna_od260/280=
-|sample_cell_type=CELL MIXTURE - tissue sample
-|sample_cell_line=
-|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
-|sample_experimental_condition=
-|sample_disease=normal
-|rna_sample_type=total RNA
-|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
-|rna_weight_ug=10
-|rna_concentration=1.7
-|sample_note=
-|profile_hcage=CNhs11762,LSID820,release009,COMPLETED
-|profile_cagescan=,,,
-|profile_srnaseq=,,,
-|profile_rnaseq=,,,
 |ancestors_in_cell_lineage_facet=
-|ancestors_in_anatomy_facet=UBERON:0000020,UBERON:0000061,UBERON:0000062,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000479,UBERON:0000480,UBERON:0000922,UBERON:0000970,UBERON:0001032,UBERON:0001062,UBERON:0002104,UBERON:0004456
 |ancestors_in_disease_facet=
-|sample_description=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000999,FF:0000004,FF:0010054
+|comment=
+|created_by=
+|creation_date=
+|data_phase=2
+|datafreeze_phase=2
+|def=
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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000970
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 66: / Line 40: @@
 |fonse_treatment=
 |fonse_treatment_closure=
-|top_motifs=
-|comment=
-|created_by=
-|creation_date=
-|def=
 |has_quality=
-|is_a=EFO:0002091;;FF:0000004;;FF:0000210;;FF:0010054
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/eye%252c%2520fetal%252c%2520donor1.CNhs11762.10054-101G9.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/eye%252c%2520fetal%252c%2520donor1.CNhs11762.10054-101G9.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/eye%252c%2520fetal%252c%2520donor1.CNhs11762.10054-101G9.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/eye%252c%2520fetal%252c%2520donor1.CNhs11762.10054-101G9.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/eye%252c%2520fetal%252c%2520donor1.CNhs11762.10054-101G9.hg38.nobarcode.ctss.bed.gz
+|id=FF:10054-101G9
+|is_a=EFO:0002091;;FF:0010054
+|is_obsolete=
+|library_id=CNhs11762
+|library_id_phase_based=2:CNhs11762
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10054
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10054
+|name=eye, fetal, donor1
 |namespace=FANTOM5
 |part_of=
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+|profile_hcage=CNhs11762,LSID820,release009,COMPLETED
+|profile_rnaseq=
+|profile_srnaseq=,,,
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+|rna_box=101
+|rna_catalog_number=Cat:RtHFN: Whole Eye
+|rna_concentration=1.7
+|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
+|rna_lot_number=B210179
+|rna_od260/230=
+|rna_od260/280=
+|rna_position=G9
+|rna_rin=8.5
+|rna_sample_type=total RNA
+|rna_tube_id=101G9
+|rna_weight_ug=10
+|sample_age=
+|sample_category=tissues
+|sample_cell_catalog=NA
+|sample_cell_line=
+|sample_cell_lot=NA
+|sample_cell_type=CELL MIXTURE - tissue sample
+|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
+|sample_company=Biochain
+|sample_description=
+|sample_dev_stage=36 weeks fetus
+|sample_disease=normal
+|sample_donor(cell lot)=1
+|sample_ethnicity=A?
+|sample_experimental_condition=
+|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;6.22783574944495e-265!GO:0005737;cytoplasm;8.34483336668501e-173!GO:0044444;cytoplasmic part;1.42029841871555e-111!GO:0043226;organelle;2.13796751502664e-104!GO:0043229;intracellular organelle;5.10861232087833e-104!GO:0005515;protein binding;1.79440936272335e-95!GO:0043227;membrane-bound organelle;5.91994300812087e-84!GO:0043231;intracellular membrane-bound organelle;5.95559361458943e-84!GO:0044422;organelle part;6.27896682037812e-76!GO:0044446;intracellular organelle part;1.24962908778329e-74!GO:0032991;macromolecular complex;6.96909372723133e-65!GO:0016043;cellular component organization and biogenesis;2.24470036168103e-49!GO:0030529;ribonucleoprotein complex;6.4763482394411e-46!GO:0043234;protein complex;1.65246731531586e-35!GO:0005739;mitochondrion;5.0562515873167e-35!GO:0031090;organelle membrane;8.07014755792724e-35!GO:0003723;RNA binding;1.69375475246874e-32!GO:0043233;organelle lumen;1.90129760773081e-30!GO:0031974;membrane-enclosed lumen;1.90129760773081e-30!GO:0033036;macromolecule localization;2.98134376999539e-29!GO:0015031;protein transport;4.5363319116515e-29!GO:0005840;ribosome;6.8962199937209e-29!GO:0044429;mitochondrial part;9.57678377881782e-29!GO:0005829;cytosol;2.3333888809379e-28!GO:0046907;intracellular transport;6.69455495321395e-28!GO:0045184;establishment of protein localization;1.52145152979071e-27!GO:0008104;protein localization;1.86593400840524e-27!GO:0044428;nuclear part;1.94736043161618e-27!GO:0031967;organelle envelope;1.00762060131142e-26!GO:0031975;envelope;1.38602936069963e-26!GO:0003735;structural constituent of ribosome;3.20884731818973e-25!GO:0016071;mRNA metabolic process;6.34726827895892e-25!GO:0048770;pigment granule;4.03113814448942e-24!GO:0042470;melanosome;4.03113814448942e-24!GO:0019538;protein metabolic process;2.94503035085789e-23!GO:0008380;RNA splicing;1.07403017469257e-22!GO:0044238;primary metabolic process;1.32362366645735e-22!GO:0044237;cellular metabolic process;4.4367785922216e-22!GO:0051649;establishment of cellular localization;1.19919899306423e-21!GO:0051641;cellular localization;1.81100194545376e-21!GO:0050953;sensory perception of light stimulus;1.81100194545376e-21!GO:0007601;visual perception;1.81100194545376e-21!GO:0033279;ribosomal subunit;1.82294957694678e-21!GO:0006119;oxidative phosphorylation;2.89762658663738e-21!GO:0043228;non-membrane-bound organelle;3.43074679954403e-21!GO:0043232;intracellular non-membrane-bound organelle;3.43074679954403e-21!GO:0006412;translation;4.61740242485804e-21!GO:0022607;cellular component assembly;4.93386068044494e-21!GO:0005740;mitochondrial envelope;8.86751243311219e-21!GO:0043170;macromolecule metabolic process;1.21344239339435e-20!GO:0031966;mitochondrial membrane;1.79150389425776e-20!GO:0006886;intracellular protein transport;2.00730219815438e-20!GO:0008092;cytoskeletal protein binding;2.00981088143694e-20!GO:0006397;mRNA processing;2.15012109360382e-20!GO:0065003;macromolecular complex assembly;3.63798887845665e-20!GO:0019866;organelle inner membrane;2.74403057933263e-19!GO:0044260;cellular macromolecule metabolic process;7.82335600657751e-19!GO:0016192;vesicle-mediated transport;1.20361533251441e-18!GO:0005743;mitochondrial inner membrane;2.37171642458323e-18!GO:0005634;nucleus;2.86254740765788e-18!GO:0006996;organelle organization and biogenesis;4.4330708380152e-18!GO:0044267;cellular protein metabolic process;6.57978543018707e-18!GO:0031988;membrane-bound vesicle;7.22543731094298e-18!GO:0006396;RNA processing;1.33407608571366e-17!GO:0031982;vesicle;1.88309537329944e-17!GO:0016023;cytoplasmic membrane-bound vesicle;1.9233386043881e-17!GO:0031410;cytoplasmic vesicle;4.66353063532169e-17!GO:0044455;mitochondrial membrane part;5.55497478561877e-17!GO:0005830;cytosolic ribosome (sensu Eukaryota);8.29854504395832e-17!GO:0005794;Golgi apparatus;3.12565014358712e-16!GO:0044445;cytosolic part;4.33516962664922e-16!GO:0009059;macromolecule biosynthetic process;8.11977057288526e-16!GO:0044249;cellular biosynthetic process;9.47108289445113e-16!GO:0009058;biosynthetic process;1.21148330039275e-15!GO:0005681;spliceosome;1.21148330039275e-15!GO:0005746;mitochondrial respiratory chain;1.21148330039275e-15!GO:0005783;endoplasmic reticulum;2.00157544592058e-15!GO:0031981;nuclear lumen;5.98159382415847e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.50700026736995e-14!GO:0008134;transcription factor binding;2.11090659637745e-14!GO:0050136;NADH dehydrogenase (quinone) activity;2.17677143366957e-14!GO:0003954;NADH dehydrogenase activity;2.17677143366957e-14!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.17677143366957e-14!GO:0012505;endomembrane system;3.32415261891742e-14!GO:0006457;protein folding;3.82267323297873e-14!GO:0030964;NADH dehydrogenase complex (quinone);2.63118912456148e-12!GO:0045271;respiratory chain complex I;2.63118912456148e-12!GO:0005747;mitochondrial respiratory chain complex I;2.63118912456148e-12!GO:0015629;actin cytoskeleton;3.23206383274646e-12!GO:0042775;organelle ATP synthesis coupled electron transport;3.91726093896035e-12!GO:0042773;ATP synthesis coupled electron transport;3.91726093896035e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;6.88568525417006e-12!GO:0003779;actin binding;9.46990928760336e-12!GO:0015935;small ribosomal subunit;1.64886972445951e-11!GO:0051082;unfolded protein binding;3.3640256995705e-11!GO:0016462;pyrophosphatase activity;4.06220595980363e-11!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.14907840428983e-11!GO:0016817;hydrolase activity, acting on acid anhydrides;4.14907840428983e-11!GO:0048523;negative regulation of cellular process;4.17133620691047e-11!GO:0017111;nucleoside-triphosphatase activity;4.22349304309104e-11!GO:0048193;Golgi vesicle transport;6.3834371388235e-11!GO:0015934;large ribosomal subunit;6.56009733384628e-11!GO:0005654;nucleoplasm;1.19067634626245e-10!GO:0022618;protein-RNA complex assembly;1.83534575594412e-10!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.7515410811811e-10!GO:0031980;mitochondrial lumen;3.08308276807257e-10!GO:0005759;mitochondrial matrix;3.08308276807257e-10!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.78629250663935e-10!GO:0044451;nucleoplasm part;6.46820766614318e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;6.46820766614318e-10!GO:0003924;GTPase activity;6.53711867057553e-10!GO:0044265;cellular macromolecule catabolic process;8.75601028492397e-10!GO:0030029;actin filament-based process;1.38630496703951e-09!GO:0048519;negative regulation of biological process;1.77865080889764e-09!GO:0030036;actin cytoskeleton organization and biogenesis;1.86523811902915e-09!GO:0019829;cation-transporting ATPase activity;3.72549638385159e-09!GO:0010467;gene expression;4.14793409743931e-09!GO:0006605;protein targeting;5.59998244039845e-09!GO:0008565;protein transporter activity;5.82422906980924e-09!GO:0000502;proteasome complex (sensu Eukaryota);6.44572515726099e-09!GO:0005212;structural constituent of eye lens;8.55501461715974e-09!GO:0007010;cytoskeleton organization and biogenesis;8.82056757797746e-09!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);8.88544916476605e-09!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;9.81841965313101e-09!GO:0003712;transcription cofactor activity;9.90515114296863e-09!GO:0044432;endoplasmic reticulum part;1.00325393154576e-08!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.05177416028996e-08!GO:0051603;proteolysis involved in cellular protein catabolic process;1.13376598072569e-08!GO:0006511;ubiquitin-dependent protein catabolic process;1.40432291115328e-08!GO:0006461;protein complex assembly;1.40432291115328e-08!GO:0019941;modification-dependent protein catabolic process;1.90524833069713e-08!GO:0043632;modification-dependent macromolecule catabolic process;1.90524833069713e-08!GO:0008135;translation factor activity, nucleic acid binding;2.2859099590097e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.45491709990209e-08!GO:0009144;purine nucleoside triphosphate metabolic process;2.45491709990209e-08!GO:0000398;nuclear mRNA splicing, via spliceosome;2.73943354219961e-08!GO:0000375;RNA splicing, via transesterification reactions;2.73943354219961e-08!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.73943354219961e-08!GO:0015986;ATP synthesis coupled proton transport;2.89803975861827e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.89803975861827e-08!GO:0044257;cellular protein catabolic process;3.12282416307273e-08!GO:0016469;proton-transporting two-sector ATPase complex;3.8699984729436e-08!GO:0009150;purine ribonucleotide metabolic process;4.33800704086862e-08!GO:0009199;ribonucleoside triphosphate metabolic process;4.62434521243923e-08!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.72852819627765e-08!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.72852819627765e-08!GO:0007600;sensory perception;4.82369466685181e-08!GO:0009055;electron carrier activity;4.92653697766277e-08!GO:0006163;purine nucleotide metabolic process;5.92718987963727e-08!GO:0005793;ER-Golgi intermediate compartment;6.10625237865783e-08!GO:0051186;cofactor metabolic process;6.71520094286848e-08!GO:0009141;nucleoside triphosphate metabolic process;7.53324070440684e-08!GO:0009142;nucleoside triphosphate biosynthetic process;9.61992930116217e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;9.61992930116217e-08!GO:0000166;nucleotide binding;9.63746319060231e-08!GO:0009057;macromolecule catabolic process;1.05892127695338e-07!GO:0005761;mitochondrial ribosome;1.07502263419799e-07!GO:0000313;organellar ribosome;1.07502263419799e-07!GO:0048475;coated membrane;1.533560356788e-07!GO:0030117;membrane coat;1.533560356788e-07!GO:0006366;transcription from RNA polymerase II promoter;1.75466590290882e-07!GO:0009152;purine ribonucleotide biosynthetic process;2.57175810515827e-07!GO:0006446;regulation of translational initiation;2.63449292931798e-07!GO:0044248;cellular catabolic process;3.0276839993583e-07!GO:0005635;nuclear envelope;3.18365492803498e-07!GO:0016564;transcription repressor activity;3.20835701887667e-07!GO:0006164;purine nucleotide biosynthetic process;3.61651533041184e-07!GO:0043283;biopolymer metabolic process;3.93350681640092e-07!GO:0009259;ribonucleotide metabolic process;4.16800447684482e-07!GO:0043285;biopolymer catabolic process;4.23925223314807e-07!GO:0006512;ubiquitin cycle;6.16327672422578e-07!GO:0030163;protein catabolic process;6.7382300673677e-07!GO:0015078;hydrogen ion transmembrane transporter activity;7.62754713631775e-07!GO:0000902;cell morphogenesis;8.55094393601121e-07!GO:0032989;cellular structure morphogenesis;8.55094393601121e-07!GO:0046034;ATP metabolic process;1.02594964970843e-06!GO:0045333;cellular respiration;1.04327073158735e-06!GO:0031965;nuclear membrane;1.15766351216242e-06!GO:0009060;aerobic respiration;1.20039477177767e-06!GO:0006913;nucleocytoplasmic transport;1.73919702021382e-06!GO:0044449;contractile fiber part;1.75388091917185e-06!GO:0005581;collagen;1.85676246753142e-06!GO:0016044;membrane organization and biogenesis;1.9273214209186e-06!GO:0006754;ATP biosynthetic process;1.96290778544824e-06!GO:0006753;nucleoside phosphate metabolic process;1.96290778544824e-06!GO:0032561;guanyl ribonucleotide binding;2.41702445890686e-06!GO:0019001;guanyl nucleotide binding;2.41702445890686e-06!GO:0044431;Golgi apparatus part;2.61361050118007e-06!GO:0005856;cytoskeleton;2.61361050118007e-06!GO:0043292;contractile fiber;2.78659953038233e-06!GO:0008361;regulation of cell size;3.48430264392563e-06!GO:0006413;translational initiation;3.53225250105155e-06!GO:0009260;ribonucleotide biosynthetic process;3.55547852334325e-06!GO:0016049;cell growth;3.56188251573913e-06!GO:0016604;nuclear body;3.95709576499642e-06!GO:0045045;secretory pathway;3.99987665423015e-06!GO:0051169;nuclear transport;4.04952860294123e-06!GO:0005525;GTP binding;4.21317290896384e-06!GO:0015077;monovalent inorganic cation transmembrane transporter activity;4.3935409646865e-06!GO:0003743;translation initiation factor activity;5.66786270146711e-06!GO:0030120;vesicle coat;5.77001518082813e-06!GO:0030662;coated vesicle membrane;5.77001518082813e-06!GO:0006732;coenzyme metabolic process;6.33164179980392e-06!GO:0031252;leading edge;6.44971439862071e-06!GO:0044420;extracellular matrix part;6.90994432669508e-06!GO:0005788;endoplasmic reticulum lumen;7.8025608071296e-06!GO:0005768;endosome;8.64034966499392e-06!GO:0006099;tricarboxylic acid cycle;9.30448988001273e-06!GO:0046356;acetyl-CoA catabolic process;9.30448988001273e-06!GO:0042175;nuclear envelope-endoplasmic reticulum network;9.89398640566892e-06!GO:0017038;protein import;1.04571334598953e-05!GO:0005773;vacuole;1.05651992649635e-05!GO:0016874;ligase activity;1.21687657142479e-05!GO:0050962;detection of light stimulus during sensory perception;1.45973855893064e-05!GO:0050908;detection of light stimulus during visual perception;1.45973855893064e-05!GO:0016607;nuclear speck;1.6625060867767e-05!GO:0042802;identical protein binding;1.6625060867767e-05!GO:0045259;proton-transporting ATP synthase complex;1.72243019165285e-05!GO:0006888;ER to Golgi vesicle-mediated transport;1.94115745992566e-05!GO:0005798;Golgi-associated vesicle;1.98884179071257e-05!GO:0032553;ribonucleotide binding;2.1248925231191e-05!GO:0032555;purine ribonucleotide binding;2.1248925231191e-05!GO:0009583;detection of light stimulus;2.17449603559468e-05!GO:0009584;detection of visible light;2.22892875394432e-05!GO:0012506;vesicle membrane;2.47419651565128e-05!GO:0048471;perinuclear region of cytoplasm;2.73549362954133e-05!GO:0005789;endoplasmic reticulum membrane;2.74012799326966e-05!GO:0003714;transcription corepressor activity;3.44999397161651e-05!GO:0006084;acetyl-CoA metabolic process;3.6193454350904e-05!GO:0030016;myofibril;3.86186286923496e-05!GO:0007602;phototransduction;4.31404332967553e-05!GO:0008639;small protein conjugating enzyme activity;4.33231598912368e-05!GO:0009109;coenzyme catabolic process;4.64740229391347e-05!GO:0044433;cytoplasmic vesicle part;4.67892690236805e-05!GO:0005905;coated pit;4.80500783702214e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;4.81643696984385e-05!GO:0051128;regulation of cellular component organization and biogenesis;4.90195492473156e-05!GO:0004842;ubiquitin-protein ligase activity;5.06975819579097e-05!GO:0030135;coated vesicle;6.38425021001925e-05!GO:0005791;rough endoplasmic reticulum;6.50853695124444e-05!GO:0022890;inorganic cation transmembrane transporter activity;6.64216491298438e-05!GO:0044453;nuclear membrane part;6.67742233098959e-05!GO:0001558;regulation of cell growth;6.90372485459785e-05!GO:0015980;energy derivation by oxidation of organic compounds;7.24274790657955e-05!GO:0030133;transport vesicle;7.80185732510192e-05!GO:0006613;cotranslational protein targeting to membrane;8.11644451582657e-05!GO:0000245;spliceosome assembly;8.12237966651955e-05!GO:0051179;localization;8.40804626040338e-05!GO:0017076;purine nucleotide binding;8.71502286763538e-05!GO:0006464;protein modification process;9.08922336003777e-05!GO:0006325;establishment and/or maintenance of chromatin architecture;9.57516239205873e-05!GO:0012501;programmed cell death;9.88886029626558e-05!GO:0006897;endocytosis;0.000100056557544421!GO:0010324;membrane invagination;0.000100056557544421!GO:0051187;cofactor catabolic process;0.000102830893219806!GO:0007264;small GTPase mediated signal transduction;0.000106399151497014!GO:0019787;small conjugating protein ligase activity;0.000113055603996335!GO:0008307;structural constituent of muscle;0.000113612607800589!GO:0032940;secretion by cell;0.000115835440140792!GO:0003713;transcription coactivator activity;0.00011610241639363!GO:0030532;small nuclear ribonucleoprotein complex;0.000118840626083699!GO:0043412;biopolymer modification;0.000120060685523146!GO:0030659;cytoplasmic vesicle membrane;0.000131107100077917!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.000132190025087225!GO:0016481;negative regulation of transcription;0.000132190025087225!GO:0019867;outer membrane;0.000135241368259409!GO:0043687;post-translational protein modification;0.000158964661739968!GO:0006915;apoptosis;0.000161590908223902!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000165400209238072!GO:0001666;response to hypoxia;0.000170192004464295!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000176599138331474!GO:0008219;cell death;0.000183832784920195!GO:0016265;death;0.000183832784920195!GO:0051246;regulation of protein metabolic process;0.000183871031074815!GO:0045786;negative regulation of progression through cell cycle;0.000187223771519267!GO:0009892;negative regulation of metabolic process;0.000195262440719301!GO:0000323;lytic vacuole;0.000196322539336396!GO:0005764;lysosome;0.000196322539336396!GO:0031324;negative regulation of cellular metabolic process;0.000230242721114253!GO:0009056;catabolic process;0.000256643714863652!GO:0016887;ATPase activity;0.000276335923862518!GO:0000139;Golgi membrane;0.000292751617375511!GO:0005583;fibrillar collagen;0.000293728125860586!GO:0007517;muscle development;0.000296875497706959!GO:0031968;organelle outer membrane;0.000297396363661815!GO:0006323;DNA packaging;0.00030214359368393!GO:0030017;sarcomere;0.000309906770072802!GO:0005730;nucleolus;0.000324395884866527!GO:0006606;protein import into nucleus;0.000336257825444167!GO:0006793;phosphorus metabolic process;0.000358946635534429!GO:0006796;phosphate metabolic process;0.000358946635534429!GO:0030867;rough endoplasmic reticulum membrane;0.000369989604579087!GO:0005770;late endosome;0.000407812802705045!GO:0043069;negative regulation of programmed cell death;0.000419153087255101!GO:0030118;clathrin coat;0.000463984928023615!GO:0050789;regulation of biological process;0.000464840626332593!GO:0048468;cell development;0.000482282499496099!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000490449834119853!GO:0051789;response to protein stimulus;0.000517111560978463!GO:0006986;response to unfolded protein;0.000517111560978463!GO:0006916;anti-apoptosis;0.000522408994842423!GO:0043066;negative regulation of apoptosis;0.000536345687750078!GO:0009117;nucleotide metabolic process;0.000604771767206467!GO:0043566;structure-specific DNA binding;0.000625703559306219!GO:0051427;hormone receptor binding;0.000630701675736259!GO:0051170;nuclear import;0.00064073925826854!GO:0006810;transport;0.000684242685712785!GO:0005839;proteasome core complex (sensu Eukaryota);0.000732531208196313!GO:0007167;enzyme linked receptor protein signaling pathway;0.000749312432766933!GO:0005741;mitochondrial outer membrane;0.00076324554891163!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000868860430465328!GO:0006333;chromatin assembly or disassembly;0.000881334875709276!GO:0005865;striated muscle thin filament;0.000948172444068612!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000964417416162512!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000966074103274436!GO:0009582;detection of abiotic stimulus;0.00099878589780535!GO:0005769;early endosome;0.00102869738271556!GO:0035257;nuclear hormone receptor binding;0.00115209527413642!GO:0005643;nuclear pore;0.00133516430151459!GO:0005200;structural constituent of cytoskeleton;0.00138199843148521!GO:0008250;oligosaccharyl transferase complex;0.00150009972085202!GO:0044440;endosomal part;0.00153984464899307!GO:0010008;endosome membrane;0.00153984464899307!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00168839381333821!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00168839381333821!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00168839381333821!GO:0016563;transcription activator activity;0.0017110924281286!GO:0042623;ATPase activity, coupled;0.00172778025245137!GO:0016853;isomerase activity;0.00172778025245137!GO:0019899;enzyme binding;0.00173995530943694!GO:0051920;peroxiredoxin activity;0.00174278058784149!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00181720872890593!GO:0006752;group transfer coenzyme metabolic process;0.00181794055839285!GO:0030027;lamellipodium;0.00185408143551911!GO:0040008;regulation of growth;0.00218557624856816!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00223877266904344!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00230722857676339!GO:0005667;transcription factor complex;0.00231453617674012!GO:0003697;single-stranded DNA binding;0.0024189130377097!GO:0031032;actomyosin structure organization and biogenesis;0.0024404924714195!GO:0004576;oligosaccharyl transferase activity;0.00251326784130297!GO:0046530;photoreceptor cell differentiation;0.00257023537258626!GO:0016881;acid-amino acid ligase activity;0.00264457919914224!GO:0051188;cofactor biosynthetic process;0.00270726921974785!GO:0045892;negative regulation of transcription, DNA-dependent;0.00281475929124275!GO:0005578;proteinaceous extracellular matrix;0.00282166377069648!GO:0043488;regulation of mRNA stability;0.00285680758369291!GO:0043487;regulation of RNA stability;0.00285680758369291!GO:0014706;striated muscle development;0.00291784934535276!GO:0045893;positive regulation of transcription, DNA-dependent;0.00300087994842105!GO:0000151;ubiquitin ligase complex;0.00305923587938081!GO:0033116;ER-Golgi intermediate compartment membrane;0.0030760821411623!GO:0008286;insulin receptor signaling pathway;0.00312373643257193!GO:0008287;protein serine/threonine phosphatase complex;0.00317821332141933!GO:0016859;cis-trans isomerase activity;0.00318877034437644!GO:0006259;DNA metabolic process;0.00338415942782449!GO:0019748;secondary metabolic process;0.00342567557466314!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.00356627924894374!GO:0033673;negative regulation of kinase activity;0.00381634519395829!GO:0006469;negative regulation of protein kinase activity;0.00381634519395829!GO:0051234;establishment of localization;0.00393035727321931!GO:0009416;response to light stimulus;0.00395051984713951!GO:0004298;threonine endopeptidase activity;0.00396121351519235!GO:0015631;tubulin binding;0.00396121351519235!GO:0032446;protein modification by small protein conjugation;0.00416820011911869!GO:0005048;signal sequence binding;0.00431078701285982!GO:0065002;intracellular protein transport across a membrane;0.00442051781795292!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00453613327760388!GO:0015399;primary active transmembrane transporter activity;0.00453613327760388!GO:0030934;anchoring collagen;0.00456642829637847!GO:0016310;phosphorylation;0.00466491363984311!GO:0008154;actin polymerization and/or depolymerization;0.00486409464464518!GO:0005762;mitochondrial large ribosomal subunit;0.00487070827837479!GO:0000315;organellar large ribosomal subunit;0.00487070827837479!GO:0050794;regulation of cellular process;0.00487979372005518!GO:0008654;phospholipid biosynthetic process;0.00487979372005518!GO:0006414;translational elongation;0.00496185455383354!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00496185455383354!GO:0043021;ribonucleoprotein binding;0.00506640470936812!GO:0005201;extracellular matrix structural constituent;0.00507334260689208!GO:0030198;extracellular matrix organization and biogenesis;0.00512799888934525!GO:0005523;tropomyosin binding;0.00513021567156682!GO:0050657;nucleic acid transport;0.00535300482301095!GO:0051236;establishment of RNA localization;0.00535300482301095!GO:0050658;RNA transport;0.00535300482301095!GO:0065004;protein-DNA complex assembly;0.00545738550362388!GO:0006403;RNA localization;0.00546954270376794!GO:0003729;mRNA binding;0.00555839203480783!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00575319782463803!GO:0001725;stress fiber;0.00581582197396953!GO:0032432;actin filament bundle;0.00581582197396953!GO:0065007;biological regulation;0.00581582197396953!GO:0016568;chromatin modification;0.00587092242893683!GO:0030137;COPI-coated vesicle;0.00587474899858036!GO:0009966;regulation of signal transduction;0.0059746216892426!GO:0016879;ligase activity, forming carbon-nitrogen bonds;0.00640790157089556!GO:0001654;eye development;0.00643323024579866!GO:0006007;glucose catabolic process;0.00660405232224935!GO:0016567;protein ubiquitination;0.0066941188186957!GO:0003724;RNA helicase activity;0.00692696264217939!GO:0030426;growth cone;0.00717963520158731!GO:0007005;mitochondrion organization and biogenesis;0.00717963520158731!GO:0007179;transforming growth factor beta receptor signaling pathway;0.00723570153311648!GO:0006612;protein targeting to membrane;0.00740676493435969!GO:0006818;hydrogen transport;0.00753151875533618!GO:0003746;translation elongation factor activity;0.00759287969862078!GO:0001726;ruffle;0.00785246634658634!GO:0030427;site of polarized growth;0.00840434665277777!GO:0030865;cortical cytoskeleton organization and biogenesis;0.00843701745884597!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00886413954908033!GO:0015002;heme-copper terminal oxidase activity;0.00886413954908033!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00886413954908033!GO:0004129;cytochrome-c oxidase activity;0.00886413954908033!GO:0045941;positive regulation of transcription;0.0089037726794429!GO:0035258;steroid hormone receptor binding;0.00893859452259637!GO:0051252;regulation of RNA metabolic process;0.00909028072091812!GO:0016197;endosome transport;0.00911407387352541!GO:0030663;COPI coated vesicle membrane;0.00914619428112065!GO:0030126;COPI vesicle coat;0.00914619428112065!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.00938188397867954!GO:0033043;regulation of organelle organization and biogenesis;0.00938188397867954!GO:0009108;coenzyme biosynthetic process;0.00944371661242922!GO:0005593;FACIT collagen;0.00945432656831246!GO:0050906;detection of stimulus during sensory perception;0.00953311410393679!GO:0015630;microtubule cytoskeleton;0.00957528823164772!GO:0005885;Arp2/3 protein complex;0.0095801114883031!GO:0015992;proton transport;0.00968745274773021!GO:0005912;adherens junction;0.010084194166093!GO:0046983;protein dimerization activity;0.0103256129726289!GO:0009165;nucleotide biosynthetic process;0.0106502376790919!GO:0048500;signal recognition particle;0.0110163692194142!GO:0043492;ATPase activity, coupled to movement of substances;0.0111429546003762!GO:0051348;negative regulation of transferase activity;0.011391190076835!GO:0031901;early endosome membrane;0.0114626670989351!GO:0030132;clathrin coat of coated pit;0.0115704213008414!GO:0019843;rRNA binding;0.0117022961984491!GO:0051674;localization of cell;0.0118279754567007!GO:0006928;cell motility;0.0118279754567007!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0119276614314671!GO:0017166;vinculin binding;0.0121195921765962!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.0121195921765962!GO:0050811;GABA receptor binding;0.0121987082501293!GO:0045445;myoblast differentiation;0.0122145089573769!GO:0008047;enzyme activator activity;0.0122554769074458!GO:0030127;COPII vesicle coat;0.0123800755466908!GO:0012507;ER to Golgi transport vesicle membrane;0.0123800755466908!GO:0007603;phototransduction, visible light;0.0124385484181501!GO:0007169;transmembrane receptor protein tyrosine kinase signaling pathway;0.0126060837579675!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0126514199456998!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0127048833778493!GO:0006402;mRNA catabolic process;0.0128168633972!GO:0030134;ER to Golgi transport vesicle;0.0129122876309554!GO:0018196;peptidyl-asparagine modification;0.0129165158364202!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0129165158364202!GO:0017022;myosin binding;0.0129622140518837!GO:0008601;protein phosphatase type 2A regulator activity;0.0131180353461357!GO:0004860;protein kinase inhibitor activity;0.0131903677161524!GO:0019904;protein domain specific binding;0.0133341692531211!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0133341692531211!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0134499273853513!GO:0006891;intra-Golgi vesicle-mediated transport;0.0140219400096337!GO:0000314;organellar small ribosomal subunit;0.0141036748150493!GO:0005763;mitochondrial small ribosomal subunit;0.0141036748150493!GO:0008139;nuclear localization sequence binding;0.0144451752250973!GO:0051087;chaperone binding;0.0144451752250973!GO:0030660;Golgi-associated vesicle membrane;0.014607162100055!GO:0016070;RNA metabolic process;0.0151027400427459!GO:0007519;skeletal muscle development;0.0151731294042115!GO:0003702;RNA polymerase II transcription factor activity;0.0156341311969183!GO:0030658;transport vesicle membrane;0.0160412808527811!GO:0016584;nucleosome positioning;0.0160412808527811!GO:0031589;cell-substrate adhesion;0.0161302313212176!GO:0006334;nucleosome assembly;0.0162223189471744!GO:0043284;biopolymer biosynthetic process;0.0166869064722503!GO:0000159;protein phosphatase type 2A complex;0.0166890878873092!GO:0030176;integral to endoplasmic reticulum membrane;0.016957760158834!GO:0031072;heat shock protein binding;0.016957760158834!GO:0055001;muscle cell development;0.016957760158834!GO:0030239;myofibril assembly;0.016957760158834!GO:0055002;striated muscle cell development;0.016957760158834!GO:0005586;collagen type III;0.0170364629297662!GO:0005862;muscle thin filament tropomyosin;0.0177855865545311!GO:0043681;protein import into mitochondrion;0.0179197939838612!GO:0001523;retinoid metabolic process;0.018126908183709!GO:0016101;diterpenoid metabolic process;0.018126908183709!GO:0001527;microfibril;0.018126908183709!GO:0031674;I band;0.0183004541026904!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0183813674591043!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0183813674591043!GO:0048592;eye morphogenesis;0.0185728799359889!GO:0030119;AP-type membrane coat adaptor complex;0.0189118176572144!GO:0006096;glycolysis;0.0189591624281238!GO:0051270;regulation of cell motility;0.0195228880471724!GO:0051287;NAD binding;0.0195228880471724!GO:0045454;cell redox homeostasis;0.0197317070645632!GO:0030041;actin filament polymerization;0.019791791443447!GO:0005869;dynactin complex;0.0202014185675465!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.0203260933953769!GO:0043623;cellular protein complex assembly;0.0207366742105764!GO:0006979;response to oxidative stress;0.0208446103341594!GO:0009581;detection of external stimulus;0.0208446103341594!GO:0007160;cell-matrix adhesion;0.0210810218788874!GO:0009314;response to radiation;0.0217405669561166!GO:0030521;androgen receptor signaling pathway;0.0220077474846787!GO:0006892;post-Golgi vesicle-mediated transport;0.0222531388870566!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0224769219055418!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0230794670308474!GO:0045047;protein targeting to ER;0.0230794670308474!GO:0008180;signalosome;0.0231114637826284!GO:0016791;phosphoric monoester hydrolase activity;0.0240980904665729!GO:0051276;chromosome organization and biogenesis;0.0248494833814935!GO:0019208;phosphatase regulator activity;0.0255023249060546!GO:0045792;negative regulation of cell size;0.0258529345463331!GO:0032559;adenyl ribonucleotide binding;0.0262613988075761!GO:0042461;photoreceptor cell development;0.0266927232401939!GO:0016126;sterol biosynthetic process;0.0267049268982313!GO:0030131;clathrin adaptor complex;0.0267139380397738!GO:0046930;pore complex;0.0268845375111749!GO:0030308;negative regulation of cell growth;0.0272073578820811!GO:0051129;negative regulation of cellular component organization and biogenesis;0.0273022798348123!GO:0007050;cell cycle arrest;0.0273022798348123!GO:0005874;microtubule;0.0273887161173736!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0274481251885473!GO:0004721;phosphoprotein phosphatase activity;0.0277124942670176!GO:0006720;isoprenoid metabolic process;0.0277252250607264!GO:0030199;collagen fibril organization;0.0279736213236611!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0281410078799044!GO:0004722;protein serine/threonine phosphatase activity;0.0281410078799044!GO:0043010;camera-type eye development;0.0283813416313244!GO:0006650;glycerophospholipid metabolic process;0.0283813416313244!GO:0044262;cellular carbohydrate metabolic process;0.0289140167979486!GO:0030518;steroid hormone receptor signaling pathway;0.0290746459716963!GO:0030320;cellular monovalent inorganic anion homeostasis;0.029091890010442!GO:0055083;monovalent inorganic anion homeostasis;0.029091890010442!GO:0055064;chloride ion homeostasis;0.029091890010442!GO:0030644;cellular chloride ion homeostasis;0.029091890010442!GO:0030832;regulation of actin filament length;0.0293276027201024!GO:0008186;RNA-dependent ATPase activity;0.0294117187820682!GO:0008147;structural constituent of bone;0.0296887632390996!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0302912977083612!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.0307443459400848!GO:0004812;aminoacyl-tRNA ligase activity;0.0307443459400848!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.0307443459400848!GO:0032535;regulation of cellular component size;0.0309561887082494!GO:0005083;small GTPase regulator activity;0.0309631903570769!GO:0051028;mRNA transport;0.0317949773248014!GO:0003690;double-stranded DNA binding;0.0318998966400056!GO:0006091;generation of precursor metabolites and energy;0.0319167429429823!GO:0048487;beta-tubulin binding;0.0320259474740608!GO:0008312;7S RNA binding;0.0323027658146774!GO:0018106;peptidyl-histidine phosphorylation;0.0336863075290298!GO:0006607;NLS-bearing substrate import into nucleus;0.0343248081973987!GO:0043034;costamere;0.0347573433846731!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0348078298813712!GO:0016491;oxidoreductase activity;0.0350253226933812!GO:0031497;chromatin assembly;0.0350601814573539!GO:0007265;Ras protein signal transduction;0.0350616138732999!GO:0016050;vesicle organization and biogenesis;0.0350667180390809!GO:0005524;ATP binding;0.0352922508266181!GO:0040011;locomotion;0.0364585327380349!GO:0048154;S100 beta binding;0.0366675010689013!GO:0048741;skeletal muscle fiber development;0.037885506850232!GO:0048747;muscle fiber development;0.037885506850232!GO:0051168;nuclear export;0.0379329350381741!GO:0051726;regulation of cell cycle;0.03824743411937!GO:0015682;ferric iron transport;0.0386229795551612!GO:0015091;ferric iron transmembrane transporter activity;0.0386229795551612!GO:0031643;positive regulation of myelination;0.0386229795551612!GO:0014866;skeletal myofibril assembly;0.0386229795551612!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.0387250388968075!GO:0030018;Z disc;0.0391276818254942!GO:0005518;collagen binding;0.0396425892101781!GO:0042803;protein homodimerization activity;0.039963748085463!GO:0006509;membrane protein ectodomain proteolysis;0.0401388163379025!GO:0033619;membrane protein proteolysis;0.0401388163379025!GO:0000785;chromatin;0.04055058262193!GO:0040012;regulation of locomotion;0.040827972427848!GO:0035035;histone acetyltransferase binding;0.0409857595196232!GO:0042981;regulation of apoptosis;0.0415380947925422!GO:0003711;transcription elongation regulator activity;0.0429173974324098!GO:0008017;microtubule binding;0.043283350641769!GO:0030139;endocytic vesicle;0.043283350641769!GO:0042805;actinin binding;0.0432974172810362!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.0440421279874226!GO:0004667;prostaglandin-D synthase activity;0.0440421279874226!GO:0050802;circadian sleep/wake cycle, sleep;0.0440421279874226!GO:0022410;circadian sleep/wake cycle process;0.0440421279874226!GO:0042749;regulation of circadian sleep/wake cycle;0.0440421279874226!GO:0043067;regulation of programmed cell death;0.0443532257663635!GO:0000074;regulation of progression through cell cycle;0.0445173090864939!GO:0006595;polyamine metabolic process;0.0453541466587244!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0454937378167592!GO:0000015;phosphopyruvate hydratase complex;0.0455054995845347!GO:0004634;phosphopyruvate hydratase activity;0.0455054995845347!GO:0016311;dephosphorylation;0.0455054995845347!GO:0046474;glycerophospholipid biosynthetic process;0.0456226123166618!GO:0005784;translocon complex;0.0458186880298506!GO:0030136;clathrin-coated vesicle;0.0464517901814483!GO:0007019;microtubule depolymerization;0.0468430266767939!GO:0006839;mitochondrial transport;0.0470069921157913!GO:0030911;TPR domain binding;0.0471248352463483!GO:0007243;protein kinase cascade;0.0474132079134287!GO:0050681;androgen receptor binding;0.0475359603412219!GO:0060052;neurofilament cytoskeleton organization and biogenesis;0.0483925392666041
+|sample_id=10054
+|sample_note=
+|sample_sex=female
+|sample_species=Human (Homo sapiens)
+|sample_strain=
+|sample_tissue=eye
+|top_motifs=CRX:7.62613342925;HOX{A6,A7,B6,B7}:5.27025194373;VSX1,2:5.07996333024;TAL1_TCF{3,4,12}:3.62849418609;TBP:3.32087561284;RORA:3.27666607144;PRDM1:2.73525583991;NKX3-2:2.69232004004;PATZ1:2.6364352355;NANOG:2.61649213078;MEF2{A,B,C,D}:2.45360715249;KLF4:2.42370911315;MAZ:2.42149673767;ZIC1..3:2.38802786466;SPZ1:2.31759876136;PAX5:2.27858481954;ESR1:2.25927432972;GATA4:2.2477558949;CDC5L:2.22485369737;GCM1,2:2.19868975446;GTF2I:2.11925041794;REST:2.08924363766;SMAD1..7,9:2.07941168125;GTF2A1,2:2.0384013603;HAND1,2:2.03030667052;HIC1:2.01956061522;MZF1:2.01521827397;GFI1B:1.98807587229;MED-1{core}:1.98609337239;MYFfamily:1.97472618089;MTF1:1.93001529054;TFAP4:1.83399416165;MYOD1:1.81975597979;FOXM1:1.80883586254;EP300:1.79241396365;PAX6:1.78292907653;NR5A1,2:1.77223480791;LMO2:1.74867491789;ADNP_IRX_SIX_ZHX:1.72893449036;MTE{core}:1.72101018039;ZNF423:1.7076947766;NFIL3:1.68230744358;POU6F1:1.63793866756;NKX2-1,4:1.63694091789;ESRRA:1.63206899859;ATF2:1.61691088194;PAX1,9:1.61388292195;NHLH1,2:1.60949296912;SP1:1.60216704166;HSF1,2:1.58756429576;TLX1..3_NFIC{dimer}:1.56912226509;RREB1:1.53093813782;IKZF1:1.51159984521;TFCP2:1.50628058923;EGR1..3:1.50188339883;TGIF1:1.48922239864;TFAP2{A,C}:1.4841273149;ZNF384:1.47077049015;SOX5:1.40576926173;FOXL1:1.3956767046;POU3F1..4:1.35262541726;XCPE1{core}:1.31941896036;TFAP2B:1.31320162426;SOX2:1.30575477551;RBPJ:1.30509115768;ZFP161:1.29344574322;NR1H4:1.28960020693;GLI1..3:1.28204000236;NR6A1:1.26674094576;DBP:1.24408555791;NR3C1:1.2042133244;BREu{core}:1.20208659926;MYBL2:1.19425930969;MAFB:1.18864049832;NFE2L1:1.18786745454;ALX4:1.18753863024;AIRE:1.18694530789;ALX1:1.13846960381;XBP1:1.10596308796;ZBTB6:1.06068644085;TEF:1.00897402326;UFEwm:0.993710098917;GFI1:0.989038695681;NKX2-3_NKX2-5:0.98437404146;AHR_ARNT_ARNT2:0.983768147308;ZNF238:0.973573217994;SNAI1..3:0.961994457301;TBX4,5:0.958625620656;POU5F1:0.943490904206;PRRX1,2:0.935196101677;JUN:0.918200627399;FOXA2:0.913485017892;ARID5B:0.902762463799;CUX2:0.899168370392;RXRA_VDR{dimer}:0.860811692224;FOX{I1,J2}:0.832724230817;HOX{A4,D4}:0.821715479507;SOX17:0.817798630774;SRF:0.816269004446;T:0.808086542862;TOPORS:0.796490934435;SOX{8,9,10}:0.782998794744;ZEB1:0.773985361031;NFATC1..3:0.747102982776;BPTF:0.74545764679;TLX2:0.743284102948;HMX1:0.741189557623;HIF1A:0.737328757018;PAX3,7:0.704177532826;RXR{A,B,G}:0.671314734495;RFX1:0.661955736992;HMGA1,2:0.64147911028;STAT2,4,6:0.585726211642;EVI1:0.583783316666;EBF1:0.561879802162;IKZF2:0.548950783993;TEAD1:0.526740976829;NANOG{mouse}:0.517882687592;RFX2..5_RFXANK_RFXAP:0.513572084348;NKX3-1:0.490220214761;FOXP3:0.487011192683;FOX{D1,D2}:0.472328731065;FOXD3:0.467339922147;ATF6:0.461508510155;AR:0.411301002785;NKX6-1,2:0.398413635781;HBP1_HMGB_SSRP1_UBTF:0.338507522774;YY1:0.31706005346;PITX1..3:0.287994059223;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.262912149207;LHX3,4:0.234330161504;GATA6:0.0993247155389;SREBF1,2:0.0497191876757;FOXO1,3,4:0.00607930234161;ZNF143:-0.0263836574563;NRF1:-0.0268566919936;ZNF148:-0.0732663883649;IRF7:-0.0867100133092;OCT4_SOX2{dimer}:-0.0873884355362;FOXP1:-0.092999888067;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.111023717599;HOXA9_MEIS1:-0.126237037976;PBX1:-0.128437415191;STAT1,3:-0.13166537447;PAX2:-0.147699209163;NFY{A,B,C}:-0.171208202367;IRF1,2:-0.191159610381;FOXN1:-0.214343140072;TFDP1:-0.214562139427;ZBTB16:-0.220739962816;CREB1:-0.265804005605;HNF1A:-0.26830655866;TP53:-0.271412483863;FOXQ1:-0.272218156774;ATF5_CREB3:-0.339025629252;POU1F1:-0.386383213571;SPI1:-0.387465172613;GZF1:-0.394666814739;ATF4:-0.396522586463;FOX{F1,F2,J1}:-0.436324081585;HOX{A5,B5}:-0.460091857205;CDX1,2,4:-0.462906147717;PAX4:-0.485001563022;POU2F1..3:-0.488319789088;HES1:-0.526300079444;HNF4A_NR2F1,2:-0.529870978967;LEF1_TCF7_TCF7L1,2:-0.564464673282;SPIB:-0.57445906027;NFE2L2:-0.580466849699;NKX2-2,8:-0.5920491322;FOSL2:-0.608323458645;ETS1,2:-0.635553187853;NFIX:-0.698904403169;NFE2:-0.713831658937;CEBPA,B_DDIT3:-0.718053878995;HLF:-0.740829357292;DMAP1_NCOR{1,2}_SMARC:-0.804841713238;PPARG:-0.884124745806;EN1,2:-0.888115000756;NFKB1_REL_RELA:-0.89227447605;bHLH_family:-0.919669072897;PDX1:-0.972192638613;FOS_FOS{B,L1}_JUN{B,D}:-1.0100058696;RUNX1..3:-1.02647432126;BACH2:-1.04182109494;E2F1..5:-1.09682040378;ONECUT1,2:-1.22411746989;STAT5{A,B}:-1.27406610054;ELF1,2,4:-1.28586841779;MYB:-1.49537428016;ELK1,4_GABP{A,B1}:-1.75728046843;PAX8:-2.74217391915
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10054-101G9;search_select_hide=table117:FF:10054-101G9
 }}

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FF:10054-101G9: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 12:18, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0