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{{f5samples
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000063,UBERON:0000064,UBERON:0000065,UBERON:0000072,UBERON:0000077,UBERON:0000119,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000490,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0000926,UBERON:0000949,UBERON:0001004,UBERON:0001007,UBERON:0001041,UBERON:0001042,UBERON:0001048,UBERON:0001062,UBERON:0001555,UBERON:0001557,UBERON:0002046,UBERON:0002050,UBERON:0002368,UBERON:0002530,UBERON:0002532,UBERON:0003091,UBERON:0003104,UBERON:0004117,UBERON:0004119,UBERON:0004120,UBERON:0004185,UBERON:0004921,UBERON:0005291,UBERON:0005423,UBERON:0005911,UBERON:0006562,UBERON:0007026,UBERON:0007123,UBERON:0007689,UBERON:0007690,UBERON:0008814,UBERON:0009142,UBERON:0009145
|DRA_sample_Accession=CAGE@SAMD00005566
|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005566
|accession_numbers=CAGE;DRX008748;DRR009620;DRZ001045;DRZ002430;DRZ012395;DRZ013780
|accession_numbers_RNASeq=RNA-Seq;DRX057152;DRR062911;DRZ007987
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002046,UBERON:0000479,UBERON:0004119,UBERON:0010314,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002368,UBERON:0002530,UBERON:0010317,UBERON:0000949
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000999,FF:0000004,FF:0010060
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr2:114036488..114036504,-!p1@PAX8!2.63!430.31!PAX8;;chr9:100615499..100615519,+!p1@FOXE1!2.40!252.04!FOXE1;;chr4:57547454..57547469,-!p1@HOPX!2.14!137.44!HOPX;;chr12:52437488..52437507,+!p2@NR4A1!2.01!101.06!NR4A1;;chr10:94449703..94449718,+!p1@HHEX!1.99!359.57!HHEX;;chr6:19837592..19837621,+!p1@ID4!1.98!543.70!ID4;;chr12:52445218..52445237,+!p1@NR4A1!1.91!955.81!NR4A1;;chr2:122042770..122042785,-!p1@TFCP2L1!1.81!64.07!TFCP2L1;;chr1:214161272..214161322,+!p1@PROX1!1.77!81.05!PROX1;;chr20:62680984..62680999,-!p1@SOX18!1.77!75.59!SOX18;;chr9:102584159..102584174,+!p2@NR4A3!1.72!91.56!NR4A3;;chr19:54041669..54041697,+!p2@ZNF331!1.65!43.25!ZNF331;;chr17:53342311..53342400,+!p1@HLF!1.63!47.50!HLF;;chr8:25902876..25902936,-!p1@EBF2!1.61!39.82!EBF2;;chr2:157189180..157189290,-!p1@NR4A2!1.59!188.58!NR4A2;;chr19:54058073..54058088,+!p1@ZNF331!1.55!34.36!ZNF331;;chr1:40105299..40105326,-!p1@HEYL!1.54!33.35!HEYL;;chr11:113930425..113930471,+!p1@ZBTB16!1.53!46.89!ZBTB16;;chr20:50179368..50179392,-!p2@NFATC2!1.53!41.84!NFATC2;;chr1:151804244..151804310,-!p1@RORC!1.46!28.09!RORC;;chr2:85981107..85981120,+!p3@ATOH8!1.46!27.69!ATOH8;;chr8:102504651..102504683,+!p1@GRHL2!1.46!27.69!GRHL2;;chr7:137686763..137686784,-!p5@CREB3L2!1.39!40.22!CREB3L2;;chr21:39870339..39870443,-!p1@ERG!1.39!23.65!ERG;;chr14:36990416..36990438,-!p4@NKX2-1!1.39!23.45!NKX2-1;;chr16:79634624..79634642,-!p1@MAF!1.38!88.53!MAF;;chr12:115122005..115122016,-!p3@TBX3!1.38!27.08!TBX3;;chr3:114819124..114819200,-!p3@ZBTB20!1.33!46.89!ZBTB20;;chr17:80797886..80797906,-!p1@ZNF750!1.33!20.41!ZNF750;;chrY:21906594..21906622,-!p1@KDM5D!1.33!20.41!KDM5D;;chr2:95963052..95963106,+!p1@KCNIP3!1.32!20.01!KCNIP3;;chr19:45971246..45971265,+!p1@FOSB!1.30!339.96!FOSB;;chr11:128457446..128457461,-!p4@ETS1!1.30!18.80!ETS1;;chr1:209979467..209979494,-!p1@IRF6!1.29!20.82!IRF6;;chr18:45935720..45935772,-!p1@ZBTB7C!1.29!18.59!ZBTB7C;;chr8:22550982..22550999,-!p1@EGR3!1.28!50.73!EGR3;;chr5:158526917..158526932,-!p1@EBF1!1.28!44.87!EBF1;;chr10:131762504..131762555,-!p1@EBF3!1.28!18.19!EBF3;;chr8:10588010..10588030,-!p1@SOX7!1.28!17.99!SOX7;;chr9:4300050..4300118,-!p1@GLIS3!1.27!111.16!GLIS3;;chr10:64576105..64576133,-!p1@EGR2!1.26!34.97!EGR2;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.26!17.18!PEG3;;chr1:61548225..61548299,+!p1@NFIA!1.25!216.47!NFIA;;chr5:137804484..137804498,+!p2@EGR1!1.25!66.09!EGR1;;chr1:170632285..170632309,+!p1@PRRX1!1.25!19.20!PRRX1;;chr18:77155922..77155939,+!p1@NFATC1!1.24!44.67!NFATC1;;chr2:85981073..85981091,+!p5@ATOH8!1.24!16.37!ATOH8;;chr9:4299979..4299996,-!p3@GLIS3!1.23!25.67!GLIS3;;chr8:106330656..106330684,+!p1@ZFPM2!1.22!40.42!ZFPM2;;chr20:2673383..2673441,+!p1@EBF4!1.20!23.24!EBF4;;chr6:106546808..106546833,+!p3@PRDM1!1.19!18.19!PRDM1;;chr11:125034640..125034655,+!p1@PKNOX2!1.19!14.55!PKNOX2;;chr12:54785074..54785122,-!p2@ZNF385A!1.18!21.83!ZNF385A;;chr12:96588368..96588394,+!p3@ELK3!1.17!36.79!ELK3;;chr15:42749722..42749739,-!p2@ZFP106!1.17!24.66!ZFP106;;chr9:4299959..4299974,-!p4@GLIS3!1.15!20.82!GLIS3;;chr17:6926362..6926377,+!p1@BCL6B!1.15!13.14!BCL6B;;chr2:113982635..113982648,-!p8@PAX8!1.15!13.14!PAX8;;chrX:101186981..101187030,-!p1@ZMAT1!1.14!41.84!ZMAT1;;chr1:61548374..61548415,+!p4@NFIA!1.14!23.65!NFIA;;chr18:53068911..53068935,-!p4@TCF4!1.14!14.55!TCF4;;chr5:158527104..158527135,-!p4@EBF1!1.14!12.94!EBF1;;chr6:10882270..10882274,-!p1@GCM2!1.14!12.94!GCM2;;chr7:15726296..15726315,-!p1@MEOX2!1.14!12.94!MEOX2;;chr2:19558373..19558392,-!p1@OSR1!1.12!33.75!OSR1;;chr16:79634595..79634620,-!p2@MAF!1.11!21.63!MAF;;chr6:1312325..1312340,+!p1@FOXQ1!1.10!19.00!FOXQ1;;chr14:36990398..36990415,-!p10@NKX2-1!1.10!11.72!NKX2-1;;chrY:2803415..2803468,+!p1@ZFY!1.10!11.52!ZFY;;chr9:102584262..102584276,+!p1@NR4A3!1.09!25.67!NR4A3;;chr12:115121962..115121987,-!p1@TBX3!1.08!93.38!TBX3;;chr2:157199008..157199023,-!p3@NR4A2!1.08!23.24!NR4A2;;chr9:100615546..100615558,+!p4@FOXE1!1.08!11.12!FOXE1;;chr11:16629261..16629284,-!p1@SOX6!1.08!11.12!SOX6;;chr1:164528410..164528428,+!p1@PBX1!1.07!81.45!PBX1;;chr3:12330560..12330579,+!p1@PPARG!1.07!12.33!PPARG;;chr2:95963120..95963136,+!p2@KCNIP3!1.06!10.51!KCNIP3;;chr18:6414884..6414942,-!p1@L3MBTL4!1.05!12.94!L3MBTL4;;chr6:28321971..28321995,-!p1@ZNF323!1.05!10.11!ZNF323;;chr15:61521417..61521460,-!p2@RORA!1.04!22.64!RORA;;chr19:54041574..54041589,+!p6@ZNF331!1.04!9.90!ZNF331;;chr1:2985760..2985774,+!p1@PRDM16!1.04!9.90!PRDM16;;chr8:40755333..40755352,-!p1@ZMAT4!1.04!9.90!ZMAT4;;chr9:114287433..114287513,+!p1@ZNF483!1.03!25.87!ZNF483;;chr12:52431016..52431071,+!p4@NR4A1!1.03!11.32!NR4A1;;chr12:115122318..115122331,-!p2@TBX3!1.03!9.70!TBX3;;chr10:94449675..94449694,+!p2@HHEX!1.02!25.67!HHEX;;chr9:4299552..4299598,-!p5@GLIS3!1.02!16.37!GLIS3;;chr22:19748231..19748317,+!p1@TBX1!1.02!9.50!TBX1;;chr4:57547360..57547371,-!p20@HOPX!1.02!9.50!HOPX;;chr12:26277956..26277980,-!p1@BHLHE41!1.01!34.16!BHLHE41;;chr5:138647473..138647476,+!p6@MATR3!1.01!23.85!MATR3;;chr1:61548069..61548102,+!p3@NFIA!1.01!22.64!NFIA;;chr19:46801639..46801699,+!p1@HIF3A!1.01!9.30!HIF3A;;chr7:63505799..63505904,+!p1@ZNF727!1.01!9.30!ZNF727;;chr13:41240717..41240735,-!p2@FOXO1!1.00!62.25!FOXO1;;chr11:113930401..113930422,+!p3@ZBTB16!1.00!8.89!ZBTB16;;chr3:114866084..114866118,-!p2@ZBTB20!0.98!31.93!ZBTB20;;chr19:58220517..58220583,-!p1@ZNF154!0.98!27.89!ZNF154;;chr20:51588873..51588953,+!p1@TSHZ2!0.98!11.52!TSHZ2;;chr10:8096631..8096660,+!p1@GATA3!0.98!10.51!GATA3;;chr10:8096772..8096787,+!p2@GATA3!0.98!10.11!GATA3;;chr3:111314186..111314204,-!p1@ZBED2!0.98!8.49!ZBED2;;chr7:88389004..88389019,+!p1@ZNF804B!0.98!8.49!ZNF804B;;chr3:71632864..71632885,-!p4@FOXP1!0.97!28.90!FOXP1;;chr16:73092963..73093001,-!p2@ZFHX3!0.97!19.40!ZFHX3;;chr19:31840130..31840160,-!p2@TSHZ3!0.97!13.14!TSHZ3;;chr8:106330696..106330719,+!p2@ZFPM2!0.97!10.71!ZFPM2;;chr5:137804405..137804444,+!p3@EGR1!0.97!10.11!EGR1;;chr16:51185318..51185348,-!p2@SALL1!0.97!8.29!SALL1;;chr2:145277882..145277967,-!p3@ZEB2!0.96!14.35!ZEB2;;chr7:113726357..113726443,+!p1@FOXP2!0.96!14.35!FOXP2;;chr9:102584241..102584261,+!p4@NR4A3!0.96!12.73!NR4A3;;chr3:114819101..114819121,-!p7@ZBTB20!0.96!8.08!ZBTB20;;chr14:36989358..36989378,-!p3@NKX2-1!0.95!7.88!NKX2-1;;chr20:45142154..45142227,-!p1@ZNF334!0.94!15.56!ZNF334;;chr12:54785054..54785072,-!p4@ZNF385A!0.94!8.89!ZNF385A;;chr2:85980919..85980942,+!p4@ATOH8!0.94!8.29!ATOH8;;chr6:28321909..28321965,-!p3@ZNF323!0.94!7.68!ZNF323;;chr9:100616439..100616476,+!p3@FOXE1!0.94!7.68!FOXE1;;chr15:96873984..96873999,+!p3@NR2F2!0.93!56.79!NR2F2;;chr2:113978342..113978354,-!p18@PAX8!0.93!7.48!PAX8;;chr12:52448213..52448262,+!p6@NR4A1!0.93!7.48!NR4A1;;chr13:41240737..41240787,-!p1@FOXO1!0.92!90.14!FOXO1;;chr3:12329397..12329433,+!p2@PPARG!0.92!17.38!PPARG;;chr9:127533519..127533573,-!p2@NR6A1!0.92!8.89!NR6A1;;chr22:31739291..31739311,-!p2@PATZ1!0.92!7.28!PATZ1;;chr1:217251619..217251658,-!p6@ESRRG!0.92!7.28!ESRRG;;chr6:19840114..19840144,+!p15@ID4!0.92!7.28!ID4;;chr9:4300016..4300039,-!p2@GLIS3!0.91!12.53!GLIS3;;chr19:58545454..58545498,+!p1@ZSCAN1!0.91!7.07!ZSCAN1;;chr1:170632477..170632506,+!p6@PRRX1!0.91!7.07!PRRX1;;chr4:149363494..149363543,-!p1@NR3C2!0.91!7.07!NR3C2;;chr16:85932760..85932775,+!p1@IRF8!0.91!7.07!IRF8;;chr13:73633131..73633149,+!p1@KLF5!0.90!77.01!KLF5;;chr12:52448420..52448460,+!p5@NR4A1!0.90!6.87!NR4A1;;chr8:55370487..55370503,+!p1@SOX17!0.90!6.87!SOX17;;chr19:22193731..22193751,-!p1@ZNF208!0.90!6.87!ZNF208;;chr20:39317868..39317884,-!p1@MAFB!0.89!85.09!MAFB;;chr2:60780753..60780800,-!p1@BCL11A!0.89!35.17!BCL11A;;chr1:61547894..61547968,+!p2@NFIA!0.89!20.62!NFIA;;chr11:113930291..113930339,+!p2@ZBTB16!0.89!11.32!ZBTB16;;chr5:137804357..137804390,+!p4@EGR1!0.89!8.08!EGR1;;chr3:114866124..114866149,-!p5@ZBTB20!0.88!11.52!ZBTB20;;chr1:214161328..214161348,+!p2@PROX1!0.88!6.67!PROX1;;chr9:20621834..20621884,-!p5@MLLT3!0.88!6.67!MLLT3;;chr7:73038839..73038862,-!p1@MLXIPL!0.88!6.67!MLXIPL;;chr19:56146352..56146420,+!p2@ZNF580,p2@ZNF581!0.87!44.26!ZNF580;;chr4:87928413..87928433,+!p3@AFF1!0.87!42.04!AFF1;;chr4:87928353..87928401,+!p4@AFF1!0.87!30.32!AFF1;;chr20:50159198..50159299,-!p1@NFATC2!0.86!9.30!NFATC2;;chr1:61924375..61924380,+!p6@NFIA!0.86!9.10!NFIA;;chr18:53089538..53089578,-!p14@TCF4!0.86!6.27!TCF4;;chr11:125034605..125034636,+!p2@PKNOX2!0.86!6.27!PKNOX2;;chr12:52448293..52448318,+!p10@NR4A1!0.86!6.27!NR4A1;;chr2:25564750..25564807,-!p1@DNMT3A!0.85!24.46!DNMT3A;;chr14:21994337..21994442,-!p1@SALL2!0.85!17.58!SALL2;;chr12:125003087..125003141,-!p4@NCOR2!0.85!7.88!NCOR2;;chr20:51589133..51589159,+!p2@TSHZ2!0.85!6.06!TSHZ2;;chr7:15726243..15726293,-!p2@MEOX2!0.85!6.06!MEOX2;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!0.85!6.06!ZNF676;;chrX:79277364..79277369,+!p3@TBX22!0.85!6.06!TBX22;;chr5:137801160..137801176,+!p1@EGR1!0.84!627.37!EGR1;;chr2:157198916..157198978,-!p2@NR4A2!0.84!22.23!NR4A2;;chr19:19729477..19729542,-!p1@PBX4!0.84!13.14!PBX4;;chr9:4300004..4300015,-!p6@GLIS3!0.84!6.87!GLIS3;;chr7:64342913..64342935,+!p2@ZNF273!0.84!5.86!ZNF273;;chr12:52448338..52448401,+!p7@NR4A1!0.84!5.86!NR4A1;;chr21:44441260..44441273,+!p3@PKNOX1!0.84!5.86!PKNOX1;;chr1:212782094..212782109,+!p1@ATF3!0.83!168.77!ATF3;;chr7:86781916..86781963,+!p2@DMTF1!0.83!26.48!DMTF1;;chr19:38085768..38085821,+!p1@ZNF540!0.83!8.89!ZNF540;;chr2:43453734..43453751,-!p1@ZFP36L2!0.82!650.62!ZFP36L2;;chr5:88178983..88179012,-!p1@MEF2C!0.82!46.89!MEF2C;;chr17:1959369..1959388,+!p2@HIC1!0.82!15.56!HIC1;;chr9:20621927..20621996,-!p3@MLLT3!0.82!9.90!MLLT3;;chr1:151043070..151043110,+!p3@GABPB2!0.82!9.30!GABPB2;;chr9:127533582..127533615,-!p1@NR6A1!0.82!8.69!NR6A1;;chr9:109625401..109625458,+!p1@ZNF462!0.81!15.36!ZNF462;;chr19:58545369..58545404,+!p2@ZSCAN1!0.81!5.46!ZSCAN1;;chr12:115121802..115121814,-!p5@TBX3!0.81!5.46!TBX3;;chr19:33793430..33793447,-!p1@CEBPA!0.80!24.05!CEBPA;;chr2:85980951..85981004,+!p1@ATOH8!0.80!9.10!ATOH8;;chr3:169381420..169381535,-!p1@MECOM!0.80!6.27!MECOM;;chr1:170633262..170633285,+!p3@PRRX1!0.79!6.06!PRRX1;;chr3:1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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000949;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002046;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002368;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005911;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0008814;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0009722
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006595,UBERON:0007123,UBERON:0010316
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 34: Line 44:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/thyroid%252c%2520fetal%252c%2520donor1.CNhs11769.10060-101H6.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/thyroid%252c%2520fetal%252c%2520donor1.CNhs11769.10060-101H6.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/thyroid%252c%2520fetal%252c%2520donor1.CNhs11769.10060-101H6.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/thyroid%252c%2520fetal%252c%2520donor1.CNhs11769.10060-101H6.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/thyroid%252c%2520fetal%252c%2520donor1.CNhs11769.10060-101H6.hg38.nobarcode.ctss.bed.gz
|id=FF:10060-101H6
|id=FF:10060-101H6
|is_a=EFO:0002091;;FF:0000004;;FF:0000210;;FF:0010060
|is_a=EFO:0002091;;FF:0010060
|is_obsolete=
|library_id=CNhs11769
|library_id_phase_based=2:CNhs11769
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10060
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10060
|name=thyroid, fetal, donor1
|name=thyroid, fetal, donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 41: Line 63:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs11769,LSID820,release009,COMPLETED
|profile_hcage=CNhs11769,LSID820,release009,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang
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|rna_box=101
|rna_box=101
|rna_catalog_number=Cat:RtHFN: Thyroid
|rna_catalog_number=Cat:RtHFN: Thyroid
Line 55: Line 80:
|rna_tube_id=101H6
|rna_tube_id=101H6
|rna_weight_ug=10
|rna_weight_ug=10
|rnaseq_library_id=RDhi10095
|sample_age=
|sample_age=
|sample_category=tissues
|sample_cell_catalog=NA
|sample_cell_catalog=NA
|sample_cell_line=
|sample_cell_line=
Line 68: Line 95:
|sample_ethnicity=A?
|sample_ethnicity=A?
|sample_experimental_condition=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.07380999800996e-206!GO:0005737;cytoplasm;5.60944413052051e-182!GO:0043226;organelle;1.57378462056579e-156!GO:0043229;intracellular organelle;3.67227440948006e-156!GO:0043231;intracellular membrane-bound organelle;2.55796779368763e-140!GO:0043227;membrane-bound organelle;2.80788495264501e-140!GO:0044444;cytoplasmic part;1.03559833288365e-124!GO:0044422;organelle part;1.18025039027347e-99!GO:0044446;intracellular organelle part;3.94055769710382e-98!GO:0005515;protein binding;2.46465672822805e-87!GO:0032991;macromolecular complex;4.59565762962441e-69!GO:0044238;primary metabolic process;2.05975709712722e-55!GO:0044237;cellular metabolic process;5.86443607964155e-54!GO:0043170;macromolecule metabolic process;3.38630388480415e-52!GO:0005739;mitochondrion;2.35592827652763e-50!GO:0030529;ribonucleoprotein complex;2.57667973088391e-48!GO:0043233;organelle lumen;1.54297043115846e-47!GO:0031974;membrane-enclosed lumen;1.54297043115846e-47!GO:0003723;RNA binding;3.63383478549743e-46!GO:0005634;nucleus;2.13333393881208e-45!GO:0031090;organelle membrane;6.91265185599533e-45!GO:0016043;cellular component organization and biogenesis;7.26325386246162e-44!GO:0044428;nuclear part;1.38892024664483e-43!GO:0015031;protein transport;1.12234391858066e-41!GO:0033036;macromolecule localization;3.23902293735294e-41!GO:0045184;establishment of protein localization;1.05172095664933e-38!GO:0008104;protein localization;1.29094110251068e-38!GO:0043234;protein complex;1.3526454274918e-38!GO:0019538;protein metabolic process;5.29650391459869e-38!GO:0044429;mitochondrial part;1.53689247143067e-35!GO:0031975;envelope;1.05657504150902e-33!GO:0031967;organelle envelope;1.30954466042785e-33!GO:0044260;cellular macromolecule metabolic process;1.93677015243056e-31!GO:0046907;intracellular transport;1.98922933658402e-31!GO:0044267;cellular protein metabolic process;5.94719469667912e-31!GO:0043283;biopolymer metabolic process;1.24197330278572e-29!GO:0005840;ribosome;3.72036337061448e-29!GO:0016071;mRNA metabolic process;1.35957433076087e-27!GO:0065003;macromolecular complex assembly;5.45920849384272e-27!GO:0006886;intracellular protein transport;6.50961212372994e-27!GO:0031981;nuclear lumen;1.83478499153344e-26!GO:0006396;RNA processing;2.25049324422203e-26!GO:0010467;gene expression;2.85177274087072e-26!GO:0005829;cytosol;2.85177274087072e-26!GO:0022607;cellular component assembly;3.61377833782676e-26!GO:0006412;translation;8.86509392848591e-26!GO:0008380;RNA splicing;1.28170855338015e-25!GO:0003735;structural constituent of ribosome;9.06116310483771e-25!GO:0005740;mitochondrial envelope;2.84436570107443e-24!GO:0019866;organelle inner membrane;7.27505548430486e-24!GO:0031966;mitochondrial membrane;7.47238832824508e-24!GO:0043228;non-membrane-bound organelle;4.60075115079579e-23!GO:0043232;intracellular non-membrane-bound organelle;4.60075115079579e-23!GO:0033279;ribosomal subunit;2.05794433417055e-22!GO:0005743;mitochondrial inner membrane;2.47394301995435e-22!GO:0006397;mRNA processing;2.94988777125125e-22!GO:0006996;organelle organization and biogenesis;3.76763866770402e-21!GO:0009059;macromolecule biosynthetic process;8.38630140432354e-21!GO:0006119;oxidative phosphorylation;8.38630140432354e-21!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.7036698006585e-20!GO:0009058;biosynthetic process;4.00319825436791e-20!GO:0005654;nucleoplasm;7.30463639512388e-20!GO:0051649;establishment of cellular localization;8.0468467135249e-20!GO:0051641;cellular localization;1.22138010176375e-19!GO:0005783;endoplasmic reticulum;5.55994968852865e-19!GO:0012505;endomembrane system;4.14320388257192e-18!GO:0044249;cellular biosynthetic process;4.14320388257192e-18!GO:0008134;transcription factor binding;6.79088188908236e-18!GO:0016192;vesicle-mediated transport;6.99847847043989e-18!GO:0005794;Golgi apparatus;7.06125340244572e-18!GO:0005746;mitochondrial respiratory chain;1.02514892634763e-17!GO:0044455;mitochondrial membrane part;1.64773230301232e-17!GO:0005681;spliceosome;1.65111668238983e-17!GO:0000166;nucleotide binding;2.0830925894155e-17!GO:0008092;cytoskeletal protein binding;3.09776910110079e-17!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.05302663131901e-17!GO:0044451;nucleoplasm part;1.57781991751862e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;9.98068539100032e-16!GO:0050136;NADH dehydrogenase (quinone) activity;1.87297615169331e-15!GO:0003954;NADH dehydrogenase activity;1.87297615169331e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.87297615169331e-15!GO:0044445;cytosolic part;3.18481106639976e-15!GO:0048770;pigment granule;1.15656353980728e-14!GO:0042470;melanosome;1.15656353980728e-14!GO:0051603;proteolysis involved in cellular protein catabolic process;2.50474300972243e-14!GO:0006511;ubiquitin-dependent protein catabolic process;3.40146946605571e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;4.49671671075114e-14!GO:0019941;modification-dependent protein catabolic process;5.32103711361773e-14!GO:0043632;modification-dependent macromolecule catabolic process;5.32103711361773e-14!GO:0031980;mitochondrial lumen;5.32103711361773e-14!GO:0005759;mitochondrial matrix;5.32103711361773e-14!GO:0044265;cellular macromolecule catabolic process;8.14364548682383e-14!GO:0044257;cellular protein catabolic process;8.76339566530582e-14!GO:0006512;ubiquitin cycle;1.08621366969387e-13!GO:0043412;biopolymer modification;1.08621366969387e-13!GO:0048193;Golgi vesicle transport;1.83918712004915e-13!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.6487624778714e-13!GO:0030964;NADH dehydrogenase complex (quinone);2.86140926632689e-13!GO:0045271;respiratory chain complex I;2.86140926632689e-13!GO:0005747;mitochondrial respiratory chain complex I;2.86140926632689e-13!GO:0042775;organelle ATP synthesis coupled electron transport;4.38158469537837e-13!GO:0042773;ATP synthesis coupled electron transport;4.38158469537837e-13!GO:0006605;protein targeting;7.59265862243139e-13!GO:0006457;protein folding;8.86833122522315e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;9.57240671446339e-13!GO:0006464;protein modification process;1.01287869524474e-12!GO:0006461;protein complex assembly;1.15261877126236e-12!GO:0022618;protein-RNA complex assembly;2.95779127827675e-12!GO:0016070;RNA metabolic process;3.18020759370216e-12!GO:0044432;endoplasmic reticulum part;3.18020759370216e-12!GO:0015935;small ribosomal subunit;3.34508249294857e-12!GO:0016462;pyrophosphatase activity;5.07501811542075e-12!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.20691088875859e-12!GO:0016817;hydrolase activity, acting on acid anhydrides;7.44870486042158e-12!GO:0003676;nucleic acid binding;1.11133162969899e-11!GO:0016874;ligase activity;2.30351365706624e-11!GO:0032553;ribonucleotide binding;2.5306418898413e-11!GO:0032555;purine ribonucleotide binding;2.5306418898413e-11!GO:0043687;post-translational protein modification;2.84893280960175e-11!GO:0017076;purine nucleotide binding;2.95399025447661e-11!GO:0015934;large ribosomal subunit;3.01690281903329e-11!GO:0017111;nucleoside-triphosphatase activity;3.09405557517221e-11!GO:0044248;cellular catabolic process;5.22468996813774e-11!GO:0003712;transcription cofactor activity;5.91038719900462e-11!GO:0030163;protein catabolic process;6.31053483321377e-11!GO:0043285;biopolymer catabolic process;6.4986676404329e-11!GO:0006366;transcription from RNA polymerase II promoter;9.60476237916559e-11!GO:0048523;negative regulation of cellular process;1.0754696092533e-10!GO:0030036;actin cytoskeleton organization and biogenesis;1.38278319745442e-10!GO:0009057;macromolecule catabolic process;1.98600743771446e-10!GO:0031965;nuclear membrane;2.38102148326186e-10!GO:0051186;cofactor metabolic process;2.58223871165938e-10!GO:0016604;nuclear body;2.61145813644882e-10!GO:0015629;actin cytoskeleton;3.62162770144787e-10!GO:0008135;translation factor activity, nucleic acid binding;3.62162770144787e-10!GO:0005635;nuclear envelope;5.22076738236723e-10!GO:0050794;regulation of cellular process;5.57396738287094e-10!GO:0051082;unfolded protein binding;5.74118539752566e-10!GO:0030029;actin filament-based process;7.98072751057684e-10!GO:0000502;proteasome complex (sensu Eukaryota);8.72454341035967e-10!GO:0008565;protein transporter activity;8.95739733941727e-10!GO:0006913;nucleocytoplasmic transport;1.26916287399185e-09!GO:0016607;nuclear speck;1.74247666533554e-09!GO:0019829;cation-transporting ATPase activity;1.83330675504503e-09!GO:0006259;DNA metabolic process;1.92716618954099e-09!GO:0005793;ER-Golgi intermediate compartment;2.0337183812062e-09!GO:0050789;regulation of biological process;2.15401611863532e-09!GO:0016564;transcription repressor activity;3.07909233446949e-09!GO:0051169;nuclear transport;3.28409756776816e-09!GO:0032559;adenyl ribonucleotide binding;3.30970300566007e-09!GO:0003779;actin binding;3.42576434555695e-09!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.5631365691688e-09!GO:0005524;ATP binding;3.70048773808611e-09!GO:0031982;vesicle;4.26521502881591e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;4.9884454262727e-09!GO:0030554;adenyl nucleotide binding;5.04528612742851e-09!GO:0031410;cytoplasmic vesicle;7.64202197316387e-09!GO:0045333;cellular respiration;9.26433571170771e-09!GO:0048519;negative regulation of biological process;1.03621910226539e-08!GO:0006793;phosphorus metabolic process;1.38157377805857e-08!GO:0006796;phosphate metabolic process;1.38157377805857e-08!GO:0000398;nuclear mRNA splicing, via spliceosome;1.67033575361263e-08!GO:0000375;RNA splicing, via transesterification reactions;1.67033575361263e-08!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.67033575361263e-08!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.92013561702247e-08!GO:0044431;Golgi apparatus part;2.03977879908263e-08!GO:0008639;small protein conjugating enzyme activity;2.26247123985727e-08!GO:0006446;regulation of translational initiation;2.26406232374042e-08!GO:0031988;membrane-bound vesicle;2.47105226331452e-08!GO:0006413;translational initiation;2.72826121408983e-08!GO:0004842;ubiquitin-protein ligase activity;2.81332249438709e-08!GO:0003743;translation initiation factor activity;3.11059349842009e-08!GO:0016023;cytoplasmic membrane-bound vesicle;4.1032246668649e-08!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.27357280810986e-08!GO:0009060;aerobic respiration;4.82990179172775e-08!GO:0005761;mitochondrial ribosome;5.56049418606072e-08!GO:0000313;organellar ribosome;5.56049418606072e-08!GO:0005789;endoplasmic reticulum membrane;6.69921950925995e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;8.42497909422546e-08!GO:0005768;endosome;9.68782027367401e-08!GO:0006732;coenzyme metabolic process;9.83040387546218e-08!GO:0030120;vesicle coat;1.09095082936267e-07!GO:0030662;coated vesicle membrane;1.09095082936267e-07!GO:0009055;electron carrier activity;1.09364963733159e-07!GO:0017038;protein import;1.77153312204152e-07!GO:0016481;negative regulation of transcription;1.85981991733307e-07!GO:0007264;small GTPase mediated signal transduction;1.8767358377663e-07!GO:0016310;phosphorylation;1.9772618970912e-07!GO:0044453;nuclear membrane part;2.13300164232511e-07!GO:0048475;coated membrane;2.19976108946214e-07!GO:0030117;membrane coat;2.19976108946214e-07!GO:0015078;hydrogen ion transmembrane transporter activity;2.27790086673952e-07!GO:0019787;small conjugating protein ligase activity;2.81173763820481e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;3.95747261552699e-07!GO:0015986;ATP synthesis coupled proton transport;4.37883751720902e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.37883751720902e-07!GO:0012501;programmed cell death;4.43674684979377e-07!GO:0016469;proton-transporting two-sector ATPase complex;4.61115120735749e-07!GO:0007010;cytoskeleton organization and biogenesis;4.82802917086457e-07!GO:0006915;apoptosis;5.72418013839863e-07!GO:0006357;regulation of transcription from RNA polymerase II promoter;6.33213964184288e-07!GO:0031324;negative regulation of cellular metabolic process;6.34600666889604e-07!GO:0016887;ATPase activity;6.45993027176453e-07!GO:0008219;cell death;6.89100183935074e-07!GO:0016265;death;6.89100183935074e-07!GO:0005730;nucleolus;7.46673854585375e-07!GO:0042623;ATPase activity, coupled;8.38821136988665e-07!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;9.15762421067029e-07!GO:0003714;transcription corepressor activity;1.33594098571669e-06!GO:0006099;tricarboxylic acid cycle;1.40864794483142e-06!GO:0046356;acetyl-CoA catabolic process;1.40864794483142e-06!GO:0005788;endoplasmic reticulum lumen;1.42603262789685e-06!GO:0019899;enzyme binding;1.67883281417792e-06!GO:0006323;DNA packaging;1.84635937981142e-06!GO:0006888;ER to Golgi vesicle-mediated transport;1.89125641370564e-06!GO:0009892;negative regulation of metabolic process;1.94558967629527e-06!GO:0005643;nuclear pore;2.08829543677636e-06!GO:0005773;vacuole;2.53293902982864e-06!GO:0016044;membrane organization and biogenesis;2.80910138025177e-06!GO:0000139;Golgi membrane;3.15164429098162e-06!GO:0009056;catabolic process;3.50506102725389e-06!GO:0016568;chromatin modification;3.78460958464733e-06!GO:0005798;Golgi-associated vesicle;4.19598905908801e-06!GO:0045259;proton-transporting ATP synthase complex;4.52196839277295e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.83880927534686e-06!GO:0009144;purine nucleoside triphosphate metabolic process;4.83880927534686e-06!GO:0046034;ATP metabolic process;5.22336011428605e-06!GO:0000151;ubiquitin ligase complex;5.28470984964932e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.6479365147519e-06!GO:0006084;acetyl-CoA metabolic process;6.93037947595373e-06!GO:0009141;nucleoside triphosphate metabolic process;7.06508311187652e-06!GO:0006606;protein import into nucleus;7.3997249448803e-06!GO:0051170;nuclear import;7.54310981072423e-06!GO:0009199;ribonucleoside triphosphate metabolic process;7.91281927364803e-06!GO:0006163;purine nucleotide metabolic process;8.5270882104858e-06!GO:0016881;acid-amino acid ligase activity;9.1273776101074e-06!GO:0009150;purine ribonucleotide metabolic process;9.1273776101074e-06!GO:0015980;energy derivation by oxidation of organic compounds;9.4556897389187e-06!GO:0065007;biological regulation;9.76119012936564e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;1.1526696878033e-05!GO:0000323;lytic vacuole;1.48872089546208e-05!GO:0005764;lysosome;1.48872089546208e-05!GO:0051276;chromosome organization and biogenesis;1.51963311750974e-05!GO:0065002;intracellular protein transport across a membrane;1.55622463415886e-05!GO:0006754;ATP biosynthetic process;1.57610468198439e-05!GO:0006753;nucleoside phosphate metabolic process;1.57610468198439e-05!GO:0009259;ribonucleotide metabolic process;1.5851711479502e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.74492032361028e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.74492032361028e-05!GO:0009109;coenzyme catabolic process;1.94981044713209e-05!GO:0007265;Ras protein signal transduction;1.97730442830512e-05!GO:0005083;small GTPase regulator activity;2.05850049682867e-05!GO:0032446;protein modification by small protein conjugation;2.05951173960426e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.10620365497782e-05!GO:0051246;regulation of protein metabolic process;2.15173161083579e-05!GO:0031252;leading edge;2.6302266591643e-05!GO:0006403;RNA localization;2.76967387994971e-05!GO:0050657;nucleic acid transport;2.81220876939659e-05!GO:0051236;establishment of RNA localization;2.81220876939659e-05!GO:0050658;RNA transport;2.81220876939659e-05!GO:0009142;nucleoside triphosphate biosynthetic process;2.88736202285257e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.88736202285257e-05!GO:0030133;transport vesicle;3.17628009339102e-05!GO:0016567;protein ubiquitination;3.54408329904518e-05!GO:0051188;cofactor biosynthetic process;3.61605834938565e-05!GO:0043069;negative regulation of programmed cell death;4.46427069432747e-05!GO:0006897;endocytosis;4.48067603425745e-05!GO:0010324;membrane invagination;4.48067603425745e-05!GO:0006613;cotranslational protein targeting to membrane;4.68526687974762e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;4.73359501552043e-05!GO:0045892;negative regulation of transcription, DNA-dependent;4.80447566341067e-05!GO:0005856;cytoskeleton;4.98768115916968e-05!GO:0043066;negative regulation of apoptosis;5.19417067591179e-05!GO:0051789;response to protein stimulus;5.35114610957511e-05!GO:0006986;response to unfolded protein;5.35114610957511e-05!GO:0046930;pore complex;5.35165676739e-05!GO:0051187;cofactor catabolic process;5.43845691992654e-05!GO:0003713;transcription coactivator activity;5.73949392770819e-05!GO:0030695;GTPase regulator activity;5.94572446439849e-05!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;6.0044758184564e-05!GO:0006164;purine nucleotide biosynthetic process;6.61926279177462e-05!GO:0009152;purine ribonucleotide biosynthetic process;7.35750100419198e-05!GO:0007049;cell cycle;7.62845911654051e-05!GO:0006091;generation of precursor metabolites and energy;8.2660950604473e-05!GO:0005770;late endosome;8.92916935745465e-05!GO:0043566;structure-specific DNA binding;9.29557341921343e-05!GO:0005667;transcription factor complex;9.30646043847642e-05!GO:0016563;transcription activator activity;9.62308665476756e-05!GO:0030532;small nuclear ribonucleoprotein complex;9.84171388201282e-05!GO:0015630;microtubule cytoskeleton;0.000106771786317751!GO:0006916;anti-apoptosis;0.000107156613048338!GO:0044449;contractile fiber part;0.00013351092327777!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000141016696008998!GO:0051128;regulation of cellular component organization and biogenesis;0.000142058388003042!GO:0048471;perinuclear region of cytoplasm;0.000153576850706002!GO:0030867;rough endoplasmic reticulum membrane;0.000157369833926145!GO:0051427;hormone receptor binding;0.000160805899240684!GO:0042802;identical protein binding;0.000188689616578314!GO:0051028;mRNA transport;0.000195422827292451!GO:0043623;cellular protein complex assembly;0.000202447517967933!GO:0000245;spliceosome assembly;0.000204640437433966!GO:0004386;helicase activity;0.000211901244331066!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000217297960719981!GO:0008654;phospholipid biosynthetic process;0.000218580211896438!GO:0009260;ribonucleotide biosynthetic process;0.000238039322625887!GO:0019222;regulation of metabolic process;0.000256574540789894!GO:0005905;coated pit;0.000264089079141561!GO:0003924;GTPase activity;0.000297997817792481!GO:0005839;proteasome core complex (sensu Eukaryota);0.000301071984753093!GO:0035257;nuclear hormone receptor binding;0.000301202592798815!GO:0008361;regulation of cell size;0.000307044848254958!GO:0044440;endosomal part;0.0003170145683113!GO:0010008;endosome membrane;0.0003170145683113!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.000319716123663559!GO:0004812;aminoacyl-tRNA ligase activity;0.000319716123663559!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.000319716123663559!GO:0016740;transferase activity;0.000329057054083071!GO:0016049;cell growth;0.000353148181350607!GO:0008307;structural constituent of muscle;0.000376814163616961!GO:0003697;single-stranded DNA binding;0.000384268463188433!GO:0007266;Rho protein signal transduction;0.000384756984202076!GO:0045786;negative regulation of progression through cell cycle;0.00038730742771324!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000393535742939636!GO:0015399;primary active transmembrane transporter activity;0.000393535742939636!GO:0043292;contractile fiber;0.000416592214362891!GO:0004576;oligosaccharyl transferase activity;0.000419997042198308!GO:0005791;rough endoplasmic reticulum;0.000445708919471951!GO:0009117;nucleotide metabolic process;0.000448412437982189!GO:0005769;early endosome;0.000451882608308121!GO:0005525;GTP binding;0.000457304669322865!GO:0065004;protein-DNA complex assembly;0.000546191321930003!GO:0009108;coenzyme biosynthetic process;0.000637502216488411!GO:0033116;ER-Golgi intermediate compartment membrane;0.000687945934399297!GO:0006612;protein targeting to membrane;0.000716725021113381!GO:0008250;oligosaccharyl transferase complex;0.000812202885789018!GO:0043038;amino acid activation;0.000813432275545098!GO:0006418;tRNA aminoacylation for protein translation;0.000813432275545098!GO:0043039;tRNA aminoacylation;0.000813432275545098!GO:0008026;ATP-dependent helicase activity;0.000833090461577205!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000833090461577205!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000897563420412828!GO:0006974;response to DNA damage stimulus;0.000934099978858363!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000958227053372872!GO:0005813;centrosome;0.000972697932141603!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000993383844337278!GO:0006752;group transfer coenzyme metabolic process;0.00101614677345977!GO:0004298;threonine endopeptidase activity;0.00109168629961494!GO:0030658;transport vesicle membrane;0.00109886642515834!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00109886642515834!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00109886642515834!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00109886642515834!GO:0009966;regulation of signal transduction;0.0011201979789418!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00114500250688656!GO:0006414;translational elongation;0.00114998001764478!GO:0005741;mitochondrial outer membrane;0.00115897781741199!GO:0007005;mitochondrion organization and biogenesis;0.00117927198830601!GO:0006333;chromatin assembly or disassembly;0.00125387780392341!GO:0042981;regulation of apoptosis;0.00126530579674224!GO:0008047;enzyme activator activity;0.00128111646043086!GO:0019867;outer membrane;0.00131936352727935!GO:0030118;clathrin coat;0.00132444728569009!GO:0001666;response to hypoxia;0.00142887386190824!GO:0008154;actin polymerization and/or depolymerization;0.0014618608267003!GO:0051920;peroxiredoxin activity;0.00154619408789813!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00162625810118887!GO:0015002;heme-copper terminal oxidase activity;0.00162625810118887!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00162625810118887!GO:0004129;cytochrome-c oxidase activity;0.00162625810118887!GO:0043492;ATPase activity, coupled to movement of substances;0.00166131831662482!GO:0031968;organelle outer membrane;0.00166131831662482!GO:0043067;regulation of programmed cell death;0.0017101003999567!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0017101003999567!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00176838373999752!GO:0005815;microtubule organizing center;0.00183644470608758!GO:0003690;double-stranded DNA binding;0.00183794666717554!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00189562697340087!GO:0006818;hydrogen transport;0.00193313178175176!GO:0030663;COPI coated vesicle membrane;0.00195072218849103!GO:0030126;COPI vesicle coat;0.00195072218849103!GO:0030027;lamellipodium;0.00202521588590238!GO:0015631;tubulin binding;0.00205035831894183!GO:0030016;myofibril;0.00211272549440228!GO:0045941;positive regulation of transcription;0.00219012695854012!GO:0005762;mitochondrial large ribosomal subunit;0.00221306004605081!GO:0000315;organellar large ribosomal subunit;0.00221306004605081!GO:0001558;regulation of cell growth;0.00222320560319916!GO:0032561;guanyl ribonucleotide binding;0.0022294400052108!GO:0019001;guanyl nucleotide binding;0.0022294400052108!GO:0016197;endosome transport;0.00223457098733813!GO:0045893;positive regulation of transcription, DNA-dependent;0.00232330110605823!GO:0016859;cis-trans isomerase activity;0.00234800655047482!GO:0006979;response to oxidative stress;0.00245403763402499!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00268812002590743!GO:0006402;mRNA catabolic process;0.00269090026300012!GO:0030134;ER to Golgi transport vesicle;0.00275175861092316!GO:0003724;RNA helicase activity;0.00278350362153848!GO:0022890;inorganic cation transmembrane transporter activity;0.00278350362153848!GO:0015992;proton transport;0.00279452425939551!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00282611336736544!GO:0005100;Rho GTPase activator activity;0.00311731247634432!GO:0019843;rRNA binding;0.00313185377637614!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00315726257898475!GO:0005096;GTPase activator activity;0.00318012780417269!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.00320723797232075!GO:0033043;regulation of organelle organization and biogenesis;0.00320723797232075!GO:0009719;response to endogenous stimulus;0.00323711819059736!GO:0005048;signal sequence binding;0.00323859293952829!GO:0016301;kinase activity;0.00326898160349063!GO:0005865;striated muscle thin filament;0.00336553076888497!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00336553076888497!GO:0006650;glycerophospholipid metabolic process;0.00342579704620537!GO:0005885;Arp2/3 protein complex;0.00379612779346341!GO:0030660;Golgi-associated vesicle membrane;0.00393470810898636!GO:0051252;regulation of RNA metabolic process;0.00393470810898636!GO:0005581;collagen;0.00398931948527003!GO:0007242;intracellular signaling cascade;0.00415805625983341!GO:0046474;glycerophospholipid biosynthetic process;0.00419778928263918!GO:0043488;regulation of mRNA stability;0.00430892348358078!GO:0043487;regulation of RNA stability;0.00430892348358078!GO:0051168;nuclear export;0.00436096931894986!GO:0051726;regulation of cell cycle;0.00439785803057028!GO:0051287;NAD binding;0.0045230090932543!GO:0006891;intra-Golgi vesicle-mediated transport;0.00469191643816499!GO:0005099;Ras GTPase activator activity;0.00471315987235765!GO:0004674;protein serine/threonine kinase activity;0.00482020420784681!GO:0006281;DNA repair;0.0049458996827411!GO:0043021;ribonucleoprotein binding;0.00519982631595734!GO:0000074;regulation of progression through cell cycle;0.00526315833974353!GO:0045045;secretory pathway;0.00529417807171744!GO:0030132;clathrin coat of coated pit;0.00533564710247288!GO:0048500;signal recognition particle;0.00540406625580967!GO:0032594;protein transport within lipid bilayer;0.00540406625580967!GO:0032907;transforming growth factor-beta3 production;0.00540406625580967!GO:0032596;protein transport into lipid raft;0.00540406625580967!GO:0032910;regulation of transforming growth factor-beta3 production;0.00540406625580967!GO:0032595;B cell receptor transport within lipid bilayer;0.00540406625580967!GO:0033606;chemokine receptor transport within lipid bilayer;0.00540406625580967!GO:0032600;chemokine receptor transport out of lipid raft;0.00540406625580967!GO:0032599;protein transport out of lipid raft;0.00540406625580967!GO:0032597;B cell receptor transport into lipid raft;0.00540406625580967!GO:0032913;negative regulation of transforming growth factor-beta3 production;0.00540406625580967!GO:0003729;mRNA binding;0.00541557927634163!GO:0030041;actin filament polymerization;0.00542928831963457!GO:0030127;COPII vesicle coat;0.00556085135970355!GO:0012507;ER to Golgi transport vesicle membrane;0.00556085135970355!GO:0051056;regulation of small GTPase mediated signal transduction;0.0057417730509742!GO:0030137;COPI-coated vesicle;0.00577862806770206!GO:0006399;tRNA metabolic process;0.00595844575547684!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00604295906037823!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00604295906037823!GO:0016491;oxidoreductase activity;0.0063768304751699!GO:0003702;RNA polymerase II transcription factor activity;0.00639324005885006!GO:0044420;extracellular matrix part;0.00656346708178848!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.00684868798760453!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.00688115654703748!GO:0030832;regulation of actin filament length;0.00704188340399141!GO:0042254;ribosome biogenesis and assembly;0.00751036930286182!GO:0018196;peptidyl-asparagine modification;0.00785361141739106!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00785361141739106!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.00788625460359228!GO:0031072;heat shock protein binding;0.00792183248683692!GO:0046983;protein dimerization activity;0.00814252475999574!GO:0045454;cell redox homeostasis;0.00828899815993224!GO:0030659;cytoplasmic vesicle membrane;0.00830188120453809!GO:0001726;ruffle;0.00833019928841635!GO:0032535;regulation of cellular component size;0.00833697077015345!GO:0007243;protein kinase cascade;0.00861747442505388!GO:0019904;protein domain specific binding;0.00909117127713409!GO:0000314;organellar small ribosomal subunit;0.00940186721897917!GO:0005763;mitochondrial small ribosomal subunit;0.00940186721897917!GO:0031323;regulation of cellular metabolic process;0.00948608298282227!GO:0022402;cell cycle process;0.00958922902522736!GO:0035258;steroid hormone receptor binding;0.00980539266267152!GO:0000059;protein import into nucleus, docking;0.0100331902777527!GO:0006260;DNA replication;0.0101386064792796!GO:0050662;coenzyme binding;0.0101801649137603!GO:0030119;AP-type membrane coat adaptor complex;0.0101876078447948!GO:0008139;nuclear localization sequence binding;0.0101876078447948!GO:0030017;sarcomere;0.0104066856335342!GO:0006350;transcription;0.010799586063692!GO:0046467;membrane lipid biosynthetic process;0.0109005060115227!GO:0007517;muscle development;0.0109333175495338!GO:0030518;steroid hormone receptor signaling pathway;0.0112471366456273!GO:0012506;vesicle membrane;0.0112864753436107!GO:0030131;clathrin adaptor complex;0.0114486954795829!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0115298552958768!GO:0006607;NLS-bearing substrate import into nucleus;0.0115819498411843!GO:0009081;branched chain family amino acid metabolic process;0.0118803330059027!GO:0048487;beta-tubulin binding;0.012291821784842!GO:0001725;stress fiber;0.0123563212345276!GO:0032432;actin filament bundle;0.0123563212345276!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0124277346266328!GO:0005586;collagen type III;0.012579426800002!GO:0006635;fatty acid beta-oxidation;0.0126096131158747!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0128047039035393!GO:0005862;muscle thin filament tropomyosin;0.0132069250443245!GO:0000785;chromatin;0.0134147146455194!GO:0006892;post-Golgi vesicle-mediated transport;0.0134830815042599!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0134862479909519!GO:0045047;protein targeting to ER;0.0134862479909519!GO:0008287;protein serine/threonine phosphatase complex;0.0138845027227352!GO:0030984;kininogen binding;0.0138845027227352!GO:0004213;cathepsin B activity;0.0138845027227352!GO:0017166;vinculin binding;0.0140362635380138!GO:0017022;myosin binding;0.0140362635380138!GO:0006839;mitochondrial transport;0.0144589433021108!GO:0033673;negative regulation of kinase activity;0.0148274123317757!GO:0006469;negative regulation of protein kinase activity;0.0148274123317757!GO:0005912;adherens junction;0.0148451391228277!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0153091499752655!GO:0044262;cellular carbohydrate metabolic process;0.015705521910791!GO:0044433;cytoplasmic vesicle part;0.0157605288013629!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0157606639072739!GO:0008286;insulin receptor signaling pathway;0.015910279293447!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0163251446952919!GO:0040008;regulation of growth;0.0168790237232382!GO:0043284;biopolymer biosynthetic process;0.0168896845390387!GO:0050811;GABA receptor binding;0.0168896845390387!GO:0010468;regulation of gene expression;0.0169561156631666!GO:0030031;cell projection biogenesis;0.0170791472064402!GO:0003746;translation elongation factor activity;0.0170793304481746!GO:0030125;clathrin vesicle coat;0.0171657280719886!GO:0030665;clathrin coated vesicle membrane;0.0171657280719886!GO:0030384;phosphoinositide metabolic process;0.0171657280719886!GO:0051087;chaperone binding;0.0171657280719886!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0174059377368628!GO:0046489;phosphoinositide biosynthetic process;0.017911340963959!GO:0030521;androgen receptor signaling pathway;0.0180681065612079!GO:0004447;iodide peroxidase activity;0.0187340963534735!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.0192085594255837!GO:0046578;regulation of Ras protein signal transduction;0.0226440817942548!GO:0008022;protein C-terminus binding;0.0228709860996813!GO:0009083;branched chain family amino acid catabolic process;0.0230975943638684!GO:0008312;7S RNA binding;0.0234162288730365!GO:0006401;RNA catabolic process;0.023779844528636!GO:0016791;phosphoric monoester hydrolase activity;0.0244854772022998!GO:0031625;ubiquitin protein ligase binding;0.0249362409643439!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0249362409643439!GO:0031902;late endosome membrane;0.0255325143585117!GO:0008186;RNA-dependent ATPase activity;0.0256306303418645!GO:0016584;nucleosome positioning;0.0259580057190557!GO:0006984;ER-nuclear signaling pathway;0.0259605169500232!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0271197814739714!GO:0008270;zinc ion binding;0.0272708423588939!GO:0008017;microtubule binding;0.0272708423588939!GO:0008147;structural constituent of bone;0.0272751982012538!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0277715721063163!GO:0005583;fibrillar collagen;0.028436243574363!GO:0048522;positive regulation of cellular process;0.0284782351594505!GO:0016311;dephosphorylation;0.0288797344752759!GO:0051348;negative regulation of transferase activity;0.0290836930859664!GO:0031628;opioid receptor binding;0.0296787192316126!GO:0031852;mu-type opioid receptor binding;0.0296787192316126!GO:0043681;protein import into mitochondrion;0.0301895409268852!GO:0032940;secretion by cell;0.0301895409268852!GO:0005637;nuclear inner membrane;0.0303405389203649!GO:0005869;dynactin complex;0.0305736651123404!GO:0005774;vacuolar membrane;0.0306476183401136!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0312427085116647!GO:0005874;microtubule;0.0319803926223073!GO:0006334;nucleosome assembly;0.0321422328982652!GO:0005938;cell cortex;0.0322057608851138!GO:0030140;trans-Golgi network transport vesicle;0.0323168125041436!GO:0051539;4 iron, 4 sulfur cluster binding;0.0326573650771822!GO:0005159;insulin-like growth factor receptor binding;0.0341000561894388!GO:0000118;histone deacetylase complex;0.0341000561894388!GO:0016408;C-acyltransferase activity;0.0341747187015096!GO:0006611;protein export from nucleus;0.0352553395199511!GO:0030312;external encapsulating structure;0.0363723283353238!GO:0030522;intracellular receptor-mediated signaling pathway;0.0364255625516903!GO:0030911;TPR domain binding;0.0367326420433667!GO:0006376;mRNA splice site selection;0.0370509067029357!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0370509067029357!GO:0003756;protein disulfide isomerase activity;0.0383576990687312!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0383576990687312!GO:0016363;nuclear matrix;0.0391077937221493!GO:0031589;cell-substrate adhesion;0.0417739885093457!GO:0004721;phosphoprotein phosphatase activity;0.0425972296094188!GO:0016853;isomerase activity;0.0428937117016323!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0428937117016323!GO:0005694;chromosome;0.0435631817834616!GO:0003711;transcription elongation regulator activity;0.0438721593974079!GO:0022415;viral reproductive process;0.0440861247165938!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0446825377779242!GO:0005684;U2-dependent spliceosome;0.0449606053341971!GO:0030833;regulation of actin filament polymerization;0.0462110429637414!GO:0050681;androgen receptor binding;0.0467668695312398!GO:0035035;histone acetyltransferase binding;0.0467668695312398!GO:0006383;transcription from RNA polymerase III promoter;0.047114793062199!GO:0017091;AU-rich element binding;0.0474870235599975!GO:0050779;RNA destabilization;0.0474870235599975!GO:0000289;poly(A) tail shortening;0.0474870235599975!GO:0005784;translocon complex;0.0480285696596497!GO:0031901;early endosome membrane;0.0480463519662165!GO:0006509;membrane protein ectodomain proteolysis;0.0489453281936945!GO:0033619;membrane protein proteolysis;0.0489453281936945!GO:0006672;ceramide metabolic process;0.0496510225498771!GO:0030032;lamellipodium biogenesis;0.0497196135817513!GO:0030100;regulation of endocytosis;0.0499122854360111
|sample_id=10060
|sample_id=10060
|sample_note=
|sample_note=
Line 75: Line 103:
|sample_tissue=thyroid
|sample_tissue=thyroid
|top_motifs=ZNF384:3.90255124684;SPZ1:2.66989305158;FOXP1:2.49021385507;FOXL1:2.25123886928;MEF2{A,B,C,D}:2.20063615164;PAX6:2.0277437856;HMGA1,2:1.89210827354;HOX{A4,D4}:1.82709560498;PITX1..3:1.82667140872;CDX1,2,4:1.79615636662;SOX5:1.77436191488;ZBTB16:1.73673249865;BPTF:1.70824146484;MAZ:1.69946941237;MYBL2:1.68516347067;FOXP3:1.65237923651;RBPJ:1.54787543443;IKZF2:1.54513465809;HIC1:1.50685023189;NR6A1:1.45182045154;NKX6-1,2:1.41637101095;FOXN1:1.41191516431;MTF1:1.3886885707;TOPORS:1.37795513477;TFAP2B:1.37282711391;SP1:1.36749117958;XBP1:1.3533326127;PAX5:1.27818719914;ZIC1..3:1.24548611141;ATF6:1.24203158955;MED-1{core}:1.22760005608;RREB1:1.22668116533;HSF1,2:1.21675593938;NKX2-1,4:1.21412818528;SNAI1..3:1.1855710623;NR1H4:1.11027686239;TFAP2{A,C}:1.10839637765;XCPE1{core}:1.08421586719;TGIF1:1.07470059087;CREB1:1.0488407313;GATA4:1.04257451101;ATF2:1.03139666176;FOXO1,3,4:1.0254777785;PRDM1:1.02515279886;ZEB1:1.01366708825;GCM1,2:0.995863117622;NFIX:0.989317190417;TBP:0.959716265137;LMO2:0.952979908953;POU6F1:0.916878391571;TEAD1:0.91441312315;PATZ1:0.902118222327;EGR1..3:0.901606506043;PAX1,9:0.891141731623;DBP:0.862796823861;POU3F1..4:0.834296934531;ZFP161:0.817865242623;LHX3,4:0.80922633448;MZF1:0.806031190056;FOX{D1,D2}:0.775253807387;KLF4:0.770095759238;TLX1..3_NFIC{dimer}:0.763954866242;SRF:0.753179037003;GTF2I:0.678224135692;NFATC1..3:0.677203840945;POU1F1:0.665936733136;FOXM1:0.651358711601;GTF2A1,2:0.638786999826;ATF4:0.635451352255;TBX4,5:0.61155688911;GFI1B:0.600673439765;ESR1:0.586571076438;HOX{A6,A7,B6,B7}:0.579810050005;BREu{core}:0.551934475251;CDC5L:0.540364478469;EP300:0.521468506891;MYOD1:0.517818651607;UFEwm:0.513316133951;RFX1:0.447943919376;NKX2-3_NKX2-5:0.44685831117;MTE{core}:0.411150096773;RXRA_VDR{dimer}:0.408402149856;NHLH1,2:0.397385303242;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.378894228454;FOXD3:0.373864933987;IKZF1:0.34033410801;MYFfamily:0.334912124462;GLI1..3:0.317219064999;T:0.316348999369;TEF:0.30791743026;PAX4:0.2669030626;CUX2:0.257752127505;STAT1,3:0.253685657991;NR5A1,2:0.251380248905;ALX1:0.239159037195;FOXA2:0.236186637693;SOX{8,9,10}:0.214582763643;SREBF1,2:0.204418251371;RFX2..5_RFXANK_RFXAP:0.192927113466;SMAD1..7,9:0.187627339593;EVI1:0.148240388005;REST:0.128651114492;AIRE:0.115715488506;NRF1:0.114054031817;TFCP2:0.0969351958255;TAL1_TCF{3,4,12}:0.0965491173459;JUN:0.092482957955;NKX3-1:0.086926238693;HBP1_HMGB_SSRP1_UBTF:0.0857983107725;FOX{I1,J2}:0.0472024805244;TFAP4:0.0260747461584;GZF1:0.0242924677274;ZNF143:0.0170949956117;RXR{A,B,G}:0.00647614562584;HOXA9_MEIS1:0.00252196779289;SOX17:-0.00388857724707;HAND1,2:-0.00394247207838;IRF7:-0.00451353097038;EN1,2:-0.0320511439134;STAT2,4,6:-0.0412790489063;ZBTB6:-0.0536812319739;TLX2:-0.0748128807275;ARID5B:-0.0770260274782;AR:-0.0899511252357;SOX2:-0.105097656454;NFY{A,B,C}:-0.136535184094;TFDP1:-0.139406698352;HIF1A:-0.142158382995;STAT5{A,B}:-0.148306140371;ONECUT1,2:-0.155765445663;PBX1:-0.167050434628;ZNF423:-0.170496623611;ELF1,2,4:-0.181154157115;VSX1,2:-0.207677400916;EBF1:-0.217741943723;ALX4:-0.233728305174;NKX3-2:-0.235489229571;ETS1,2:-0.260045762388;NR3C1:-0.291259285668;RORA:-0.291748163284;ATF5_CREB3:-0.291929728662;IRF1,2:-0.303677864047;HMX1:-0.319424412571;HNF1A:-0.320447505378;HNF4A_NR2F1,2:-0.320902559261;PAX3,7:-0.32263708762;SPI1:-0.33091471163;YY1:-0.347450484217;PPARG:-0.358160465999;SPIB:-0.380557421576;NANOG{mouse}:-0.385014077952;LEF1_TCF7_TCF7L1,2:-0.397059209725;MAFB:-0.402687970033;GFI1:-0.427248501914;NFIL3:-0.484385962563;TP53:-0.487565619308;ELK1,4_GABP{A,B1}:-0.513209514188;POU5F1:-0.560644989836;PDX1:-0.568684713324;FOX{F1,F2,J1}:-0.572092764847;PRRX1,2:-0.597299582699;PAX2:-0.618433241986;GATA6:-0.639615628083;FOXQ1:-0.663410305839;OCT4_SOX2{dimer}:-0.67623926431;NFKB1_REL_RELA:-0.717936450395;E2F1..5:-0.765275114399;ESRRA:-0.772730041534;HLF:-0.822583191134;ZNF238:-0.846487061875;HES1:-0.894078425607;ADNP_IRX_SIX_ZHX:-0.956048244468;NFE2:-0.962049086263;FOSL2:-0.982048724711;FOS_FOS{B,L1}_JUN{B,D}:-1.00293587005;RUNX1..3:-1.00706224348;NFE2L1:-1.03056812602;ZNF148:-1.06050027825;DMAP1_NCOR{1,2}_SMARC:-1.06259659868;NKX2-2,8:-1.08544272657;HOX{A5,B5}:-1.08923569451;BACH2:-1.09818140733;AHR_ARNT_ARNT2:-1.10239642227;NANOG:-1.10281983446;CEBPA,B_DDIT3:-1.14370308197;bHLH_family:-1.17276588729;NFE2L2:-1.27024387272;POU2F1..3:-1.48003571386;MYB:-1.48145394576;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.69971494993;PAX8:-1.89292718527;CRX:-2.07153462583
|top_motifs=ZNF384:3.90255124684;SPZ1:2.66989305158;FOXP1:2.49021385507;FOXL1:2.25123886928;MEF2{A,B,C,D}:2.20063615164;PAX6:2.0277437856;HMGA1,2:1.89210827354;HOX{A4,D4}:1.82709560498;PITX1..3:1.82667140872;CDX1,2,4:1.79615636662;SOX5:1.77436191488;ZBTB16:1.73673249865;BPTF:1.70824146484;MAZ:1.69946941237;MYBL2:1.68516347067;FOXP3:1.65237923651;RBPJ:1.54787543443;IKZF2:1.54513465809;HIC1:1.50685023189;NR6A1:1.45182045154;NKX6-1,2:1.41637101095;FOXN1:1.41191516431;MTF1:1.3886885707;TOPORS:1.37795513477;TFAP2B:1.37282711391;SP1:1.36749117958;XBP1:1.3533326127;PAX5:1.27818719914;ZIC1..3:1.24548611141;ATF6:1.24203158955;MED-1{core}:1.22760005608;RREB1:1.22668116533;HSF1,2:1.21675593938;NKX2-1,4:1.21412818528;SNAI1..3:1.1855710623;NR1H4:1.11027686239;TFAP2{A,C}:1.10839637765;XCPE1{core}:1.08421586719;TGIF1:1.07470059087;CREB1:1.0488407313;GATA4:1.04257451101;ATF2:1.03139666176;FOXO1,3,4:1.0254777785;PRDM1:1.02515279886;ZEB1:1.01366708825;GCM1,2:0.995863117622;NFIX:0.989317190417;TBP:0.959716265137;LMO2:0.952979908953;POU6F1:0.916878391571;TEAD1:0.91441312315;PATZ1:0.902118222327;EGR1..3:0.901606506043;PAX1,9:0.891141731623;DBP:0.862796823861;POU3F1..4:0.834296934531;ZFP161:0.817865242623;LHX3,4:0.80922633448;MZF1:0.806031190056;FOX{D1,D2}:0.775253807387;KLF4:0.770095759238;TLX1..3_NFIC{dimer}:0.763954866242;SRF:0.753179037003;GTF2I:0.678224135692;NFATC1..3:0.677203840945;POU1F1:0.665936733136;FOXM1:0.651358711601;GTF2A1,2:0.638786999826;ATF4:0.635451352255;TBX4,5:0.61155688911;GFI1B:0.600673439765;ESR1:0.586571076438;HOX{A6,A7,B6,B7}:0.579810050005;BREu{core}:0.551934475251;CDC5L:0.540364478469;EP300:0.521468506891;MYOD1:0.517818651607;UFEwm:0.513316133951;RFX1:0.447943919376;NKX2-3_NKX2-5:0.44685831117;MTE{core}:0.411150096773;RXRA_VDR{dimer}:0.408402149856;NHLH1,2:0.397385303242;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.378894228454;FOXD3:0.373864933987;IKZF1:0.34033410801;MYFfamily:0.334912124462;GLI1..3:0.317219064999;T:0.316348999369;TEF:0.30791743026;PAX4:0.2669030626;CUX2:0.257752127505;STAT1,3:0.253685657991;NR5A1,2:0.251380248905;ALX1:0.239159037195;FOXA2:0.236186637693;SOX{8,9,10}:0.214582763643;SREBF1,2:0.204418251371;RFX2..5_RFXANK_RFXAP:0.192927113466;SMAD1..7,9:0.187627339593;EVI1:0.148240388005;REST:0.128651114492;AIRE:0.115715488506;NRF1:0.114054031817;TFCP2:0.0969351958255;TAL1_TCF{3,4,12}:0.0965491173459;JUN:0.092482957955;NKX3-1:0.086926238693;HBP1_HMGB_SSRP1_UBTF:0.0857983107725;FOX{I1,J2}:0.0472024805244;TFAP4:0.0260747461584;GZF1:0.0242924677274;ZNF143:0.0170949956117;RXR{A,B,G}:0.00647614562584;HOXA9_MEIS1:0.00252196779289;SOX17:-0.00388857724707;HAND1,2:-0.00394247207838;IRF7:-0.00451353097038;EN1,2:-0.0320511439134;STAT2,4,6:-0.0412790489063;ZBTB6:-0.0536812319739;TLX2:-0.0748128807275;ARID5B:-0.0770260274782;AR:-0.0899511252357;SOX2:-0.105097656454;NFY{A,B,C}:-0.136535184094;TFDP1:-0.139406698352;HIF1A:-0.142158382995;STAT5{A,B}:-0.148306140371;ONECUT1,2:-0.155765445663;PBX1:-0.167050434628;ZNF423:-0.170496623611;ELF1,2,4:-0.181154157115;VSX1,2:-0.207677400916;EBF1:-0.217741943723;ALX4:-0.233728305174;NKX3-2:-0.235489229571;ETS1,2:-0.260045762388;NR3C1:-0.291259285668;RORA:-0.291748163284;ATF5_CREB3:-0.291929728662;IRF1,2:-0.303677864047;HMX1:-0.319424412571;HNF1A:-0.320447505378;HNF4A_NR2F1,2:-0.320902559261;PAX3,7:-0.32263708762;SPI1:-0.33091471163;YY1:-0.347450484217;PPARG:-0.358160465999;SPIB:-0.380557421576;NANOG{mouse}:-0.385014077952;LEF1_TCF7_TCF7L1,2:-0.397059209725;MAFB:-0.402687970033;GFI1:-0.427248501914;NFIL3:-0.484385962563;TP53:-0.487565619308;ELK1,4_GABP{A,B1}:-0.513209514188;POU5F1:-0.560644989836;PDX1:-0.568684713324;FOX{F1,F2,J1}:-0.572092764847;PRRX1,2:-0.597299582699;PAX2:-0.618433241986;GATA6:-0.639615628083;FOXQ1:-0.663410305839;OCT4_SOX2{dimer}:-0.67623926431;NFKB1_REL_RELA:-0.717936450395;E2F1..5:-0.765275114399;ESRRA:-0.772730041534;HLF:-0.822583191134;ZNF238:-0.846487061875;HES1:-0.894078425607;ADNP_IRX_SIX_ZHX:-0.956048244468;NFE2:-0.962049086263;FOSL2:-0.982048724711;FOS_FOS{B,L1}_JUN{B,D}:-1.00293587005;RUNX1..3:-1.00706224348;NFE2L1:-1.03056812602;ZNF148:-1.06050027825;DMAP1_NCOR{1,2}_SMARC:-1.06259659868;NKX2-2,8:-1.08544272657;HOX{A5,B5}:-1.08923569451;BACH2:-1.09818140733;AHR_ARNT_ARNT2:-1.10239642227;NANOG:-1.10281983446;CEBPA,B_DDIT3:-1.14370308197;bHLH_family:-1.17276588729;NFE2L2:-1.27024387272;POU2F1..3:-1.48003571386;MYB:-1.48145394576;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.69971494993;PAX8:-1.89292718527;CRX:-2.07153462583
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10060-101H6;search_select_hide=table117:FF:10060-101H6
}}
}}

Latest revision as of 12:18, 3 June 2020

Name:thyroid, fetal, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11769
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuethyroid
dev stage36 weeks fetus
sexmale
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyBiochain
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberA811069
catalog numberCat:RtHFN: Thyroid
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005566
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11769 CAGE DRX008748 DRR009620
Accession ID Hg19

Library idBAMCTSS
CNhs11769 DRZ001045 DRZ002430
Accession ID Hg38

Library idBAMCTSS
CNhs11769 DRZ012395 DRZ013780
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload

RNA-Seq Accession numbers
MethodSample accession id
RNA-Seq  SAMD00005566
Library accession numbers

Library idMethodExp. accession idRun accession id
RDhi10095 RNA-Seq DRX057152 DRR062911
Accession ID Hg19

Library idBAMCTSS
RDhi10095 DRZ007987


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.384
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.215
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0.0799
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0.206
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.147
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0.0799
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.341
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.0799
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.107
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.535
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.18
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.322
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.0799
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.0799
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.147
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0.0799
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.285
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.186
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0.418
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0799
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.338
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.0799
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.345
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.206
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0.0799
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.147
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0817
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.0799
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.417
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.00345
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.257
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.257
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.703
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.0799
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0.958
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.0799
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0.0799
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0.206
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.0799
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.45
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0.147
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11769

Jaspar motifP-value
MA0002.23.9344e-4
MA0003.10.245
MA0004.10.0484
MA0006.10.91
MA0007.10.244
MA0009.10.966
MA0014.10.868
MA0017.10.0651
MA0018.20.0136
MA0019.10.483
MA0024.10.67
MA0025.10.436
MA0027.10.72
MA0028.10.0886
MA0029.10.215
MA0030.10.991
MA0031.10.369
MA0035.20.00304
MA0038.10.591
MA0039.20.275
MA0040.10.335
MA0041.10.447
MA0042.10.935
MA0043.10.571
MA0046.10.0726
MA0047.20.806
MA0048.10.648
MA0050.10.0725
MA0051.10.0523
MA0052.18.73658e-5
MA0055.10.543
MA0057.10.926
MA0058.10.05
MA0059.10.0105
MA0060.10.0966
MA0061.11.19728e-4
MA0062.20.00321
MA0065.20.00244
MA0066.10.0128
MA0067.10.208
MA0068.10.999
MA0069.10.318
MA0070.10.992
MA0071.10.551
MA0072.10.196
MA0073.10.515
MA0074.10.684
MA0076.10.118
MA0077.10.995
MA0078.10.216
MA0079.20.533
MA0080.27.43616e-9
MA0081.10.0388
MA0083.10.708
MA0084.10.436
MA0087.10.971
MA0088.10.0289
MA0090.10.366
MA0091.10.0969
MA0092.10.21
MA0093.10.0582
MA0099.21.01314e-23
MA0100.10.522
MA0101.14.5531e-4
MA0102.20.00332
MA0103.10.526
MA0104.20.00242
MA0105.16.31508e-9
MA0106.10.0198
MA0107.11.56794e-4
MA0108.20.00102
MA0111.10.617
MA0112.20.0058
MA0113.10.743
MA0114.10.0509
MA0115.10.187
MA0116.14.20357e-5
MA0117.10.517
MA0119.10.968
MA0122.10.665
MA0124.10.336
MA0125.10.733
MA0131.10.631
MA0135.10.328
MA0136.11.14266e-10
MA0137.20.221
MA0138.20.58
MA0139.10.118
MA0140.10.00167
MA0141.10.153
MA0142.10.0121
MA0143.10.119
MA0144.10.288
MA0145.10.564
MA0146.10.189
MA0147.10.00127
MA0148.10.781
MA0149.10.158
MA0150.13.30756e-6
MA0152.10.138
MA0153.10.91
MA0154.19.71459e-4
MA0155.10.835
MA0156.11.73342e-7
MA0157.10.291
MA0159.10.0513
MA0160.10.07
MA0162.10.213
MA0163.18.03937e-9
MA0164.10.446
MA0258.10.0503
MA0259.10.164



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11769

Novel motifP-value
10.118
100.12
1000.72
1010.853
1020.808
1030.00932
1040.53
1050.94
1060.128
1070.533
1080.946
1090.00159
110.0385
1100.141
1110.476
1120.955
1130.0479
1140.0562
1150.998
1160.991
1170.0327
1180.162
1190.549
120.493
1200.189
1210.917
1220.242
1230.23
1240.31
1250.486
1260.522
1270.19
1280.433
1290.533
130.332
1300.159
1310.734
1320.05
1330.397
1340.855
1350.839
1360.318
1370.275
1380.775
1390.611
140.916
1400.6
1410.928
1420.151
1430.00699
1440.709
1450.652
1460.156
1470.774
1480.101
1490.666
150.121
1500.258
1510.53
1520.597
1530.953
1540.833
1550.474
1560.742
1570.441
1580.295
1590.126
160.136
1600.354
1610.42
1620.619
1630.0305
1640.953
1650.988
1660.979
1670.287
1680.397
1690.0476
170.0812
180.00334
190.575
20.968
200.55
210.706
220.211
230.232
240.116
250.585
260.0788
270.169
280.675
290.073
30.116
300.507
310.534
320.977
330.275
340.799
350.272
360.0303
370.0727
380.408
390.734
40.471
400.0742
410.0634
420.128
430.0378
440.652
450.646
460.0457
470.0463
480.0998
490.106
50.333
500.933
510.28
520.719
530.938
540.285
550.706
560.244
570.613
580.547
590.0956
60.8
600.437
610.217
620.159
630.584
640.143
650.258
660.0382
670.66
680.949
690.804
70.585
700.0562
710.0414
720.1
730.182
740.692
750.053
760.648
770.341
780.636
790.938
80.0648
800.118
810.29
820.527
830.349
840.851
850.442
860.252
871.45721e-4
880.91
890.398
90.201
900.201
910.378
920.818
930.815
940.0437
950.0104
960.319
970.884
980.71
990.79



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11769


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0002046 (thyroid gland)
0000479 (tissue)
0004119 (endoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002368 (endocrine gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0000949 (endocrine system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000999 (fetal tissue sample)
0000004 (tissue sample)
0010060 (human thyroid - fetal sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0007123 (pharyngeal pouch 2)
UBERON:0010316 (germ layer / neural crest)

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