FF:10063-101H9: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005719 | |||
|accession_numbers=CAGE;DRX008737;DRR009609;DRZ001034;DRZ002419;DRZ012384;DRZ013769!CAGE;DRX008738;DRR009610;DRZ001035;DRZ002420;DRZ012385;DRZ013770 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002108,UBERON:0000160,UBERON:0000479,UBERON:0001007,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0001555,UBERON:0002114,UBERON:0005409 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002108,UBERON:0000160,UBERON:0000479,UBERON:0001007,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0001555,UBERON:0002114,UBERON:0005409 | ||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr20:43935474..43935490,+!p1@RBPJL!2.40!249.17!RBPJL;;chr6:134210243..134210257,+!p1@TCF21!2.08!118.50!TCF21;;chr1:201979743..201979762,+!p1@ELF3!2.04!108.98!ELF3;;chr1:27240455..27240474,-!p1@NR0B2!1.93!84.64!NR0B2;;chr4:174451370..174451387,-!p1@HAND2!1.89!76.71!HAND2;;chr1:201979703..201979721,+!p2@ELF3!1.87!72.48!ELF3;;chr16:85932760..85932775,+!p1@IRF8!1.86!71.95!IRF8;;chr5:149546334..149546364,+!p1@CDX1!1.81!63.48!CDX1;;chr8:76319876..76319926,+!p1@HNF4G!1.81!62.95!HNF4G;;chr19:4153613..4153652,+!p1@CREB3L3!1.79!61.37!CREB3L3;;chr13:28494130..28494168,+!p1@PDX1!1.75!55.02!PDX1;;chr1:214161272..214161322,+!p1@PROX1!1.65!60.31!PROX1;;chr20:62680984..62680999,-!p1@SOX18!1.65!57.66!SOX18;;chr11:34642612..34642646,+!p1@EHF!1.65!43.91!EHF;;chr16:86544113..86544145,+!p1@FOXF1!1.62!50.26!FOXF1;;chr13:72441315..72441454,-!p1@DACH1!1.61!76.71!DACH1;;chr6:34524093..34524135,-!p1@SPDEF!1.60!39.15!SPDEF;;chr2:182545234..182545252,-!p1@NEUROD1!1.59!38.09!NEUROD1;;chr20:42984330..42984364,+!p2@HNF4A!1.59!37.56!HNF4A;;chr1:40105299..40105326,-!p1@HEYL!1.57!35.97!HEYL;;chr8:11561684..11561751,+!p1@GATA4!1.54!33.33!GATA4;;chr16:79634595..79634620,-!p2@MAF!1.52!58.19!MAF;;chr6:1312325..1312340,+!p1@FOXQ1!1.49!48.14!FOXQ1;;chr1:209979467..209979494,-!p1@IRF6!1.49!33.86!IRF6;;chr21:39870339..39870443,-!p1@ERG!1.49!30.15!ERG;;chr19:46801639..46801699,+!p1@HIF3A!1.49!29.63!HIF3A;;chr18:19749386..19749404,+!p2@GATA6!1.45!38.09!GATA6;;chr15:53082521..53082549,-!p1@ONECUT1!1.43!25.92!ONECUT1;;chr11:16419037..16419064,-!p3@SOX6!1.43!25.92!SOX6;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.42!25.39!ZBED1;;chr2:145277882..145277967,-!p3@ZEB2!1.41!41.79!ZEB2;;chr18:55102628..55102646,+!p2@ONECUT2!1.41!24.86!ONECUT2;;chr19:50922187..50922204,+!p1@SPIB!1.40!24.34!SPIB;;chr20:43029862..43029900,+!p1@HNF4A!1.40!24.34!HNF4A;;chr8:76452097..76452126,+!p2@HNF4G!1.40!24.34!HNF4G;;chr10:23481233..23481249,+!p1@PTF1A!1.39!23.81!PTF1A;;chr12:100897130..100897149,+!p3@NR1H4!1.38!22.75!NR1H4;;chr7:15726296..15726315,-!p1@MEOX2!1.37!22.22!MEOX2;;chr19:46800289..46800327,+!p2@HIF3A!1.36!21.69!HIF3A;;chr1:151804244..151804310,-!p1@RORC!1.35!21.16!RORC;;chr18:55102598..55102623,+!p1@ONECUT2!1.35!21.16!ONECUT2;;chr16:79634624..79634642,-!p1@MAF!1.34!80.94!MAF;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.32!20.10!PEG3;;chr20:20348740..20348757,+!p1@INSM1!1.31!19.57!INSM1;;chr18:19749541..19749557,+!p1@GATA6!1.30!58.19!GATA6;;chr1:42801540..42801562,-!p4@FOXJ3!1.29!18.52!FOXJ3;;chr13:28543431..28543487,-!p1@CDX2!1.29!18.52!CDX2;;chr3:71355163..71355209,-!p5@FOXP1!1.27!24.34!FOXP1;;chr3:169381420..169381535,-!p1@MECOM!1.27!20.63!MECOM;;chr2:166326200..166326216,+!p1@CSRNP3!1.26!24.86!CSRNP3;;chr11:61520075..61520136,+!p1@C11orf9!1.25!34.92!C11orf9;;chr13:28543285..28543314,-!p2@CDX2!1.25!16.93!CDX2;;chr17:36105042..36105060,-!p1@HNF1B!1.25!16.93!HNF1B;;chrX:25034067..25034088,-!p1@ARX!1.24!16.40!ARX;;chr15:57511609..57511651,+!p2@TCF12!1.23!26.45!TCF12;;chr20:50159198..50159299,-!p1@NFATC2!1.23!23.28!NFATC2;;chr1:2985760..2985774,+!p1@PRDM16!1.23!15.87!PRDM16;;chr22:38380543..38380569,-!p1@SOX10!1.23!15.87!SOX10;;chr12:52445218..52445237,+!p1@NR4A1!1.22!194.15!NR4A1;;chr19:33793430..33793447,-!p1@CEBPA!1.20!61.37!CEBPA;;chr3:119500941..119500961,+!p1@NR1I2!1.20!14.81!NR1I2;;chr7:156803329..156803362,-!p1@MNX1!1.20!14.81!MNX1;;chr7:73038839..73038862,-!p1@MLXIPL!1.20!14.81!MLXIPL;;chr7:15726243..15726293,-!p2@MEOX2!1.18!14.28!MEOX2;;chr10:101292684..101292706,+!p1@NKX2-3!1.18!14.28!NKX2-3;;chr2:68592406..68592424,+!p1@PLEK!1.17!13.75!PLEK;;chr1:200011711..200011752,+!p3@NR5A2!1.17!13.75!NR5A2;;chr6:1389789..1389821,+!p1@FOXF2!1.16!18.52!FOXF2;;chr13:73633131..73633149,+!p1@KLF5!1.15!139.13!KLF5;;chr12:96588368..96588394,+!p3@ELK3!1.15!35.44!ELK3;;chr5:50679228..50679288,+!p1@ISL1!1.15!13.23!ISL1;;chr16:79634581..79634592,-!p4@MAF!1.15!13.23!MAF;;chr20:51588873..51588953,+!p1@TSHZ2!1.14!16.93!TSHZ2;;chr19:46367576..46367592,+!p1@FOXA3!1.14!12.70!FOXA3;;chr6:391743..391759,+!p1@IRF4!1.14!12.70!IRF4;;chr5:88178983..88179012,-!p1@MEF2C!1.13!95.75!MEF2C;;chr8:25902876..25902936,-!p1@EBF2!1.12!12.17!EBF2;;chr20:22564895..22564910,-!p1@FOXA2!1.12!12.17!FOXA2;;chr11:47400078..47400106,-!p1@SPI1!1.12!12.17!SPI1;;chr4:109087445..109087463,-!p1@LEF1!1.12!12.17!LEF1;;chr11:113930425..113930471,+!p1@ZBTB16!1.10!16.93!ZBTB16;;chr3:12330560..12330579,+!p1@PPARG!1.10!13.23!PPARG;;chr1:199996733..199996781,+!p1@NR5A2!1.10!11.64!NR5A2;;chr7:113726357..113726443,+!p1@FOXP2!1.09!19.57!FOXP2;;chr3:114819124..114819200,-!p3@ZBTB20!1.08!25.92!ZBTB20;;chr3:27763807..27763822,-!p1@EOMES!1.06!10.58!EOMES;;chr7:115608319..115608352,-!p4@TFEC!1.06!10.58!TFEC;;chr8:102504651..102504683,+!p1@GRHL2!1.06!10.58!GRHL2;;chr13:28494109..28494122,+!p2@PDX1!1.06!10.58!PDX1;;chr2:19558373..19558392,-!p1@OSR1!1.05!28.04!OSR1;;chr5:158526917..158526932,-!p1@EBF1!1.04!25.39!EBF1;;chr12:52437488..52437507,+!p2@NR4A1!1.04!10.05!NR4A1;;chrX:85403445..85403479,+!p2@DACH2!1.04!10.05!DACH2;;chr20:30433396..30433414,-!p1@FOXS1!1.04!10.05!FOXS1;;chr17:41739283..41739297,-!p1@MEOX1!1.04!10.05!MEOX1;;chr8:60031619..60031676,-!p1@TOX!1.03!21.16!TOX;;chr1:164528410..164528428,+!p1@PBX1!1.02!72.48!PBX1;;chr10:48355030..48355090,+!p1@ZNF488!1.02!12.17!ZNF488;;chr13:28543388..28543406,-!p3@CDX2!1.02!9.52!CDX2;;chr17:46671108..46671147,-!p1@HOXB5!1.02!9.52!HOXB5;;chr3:128212033..128212051,-!p1@GATA2!1.02!9.52!GATA2;;chr4:149363494..149363543,-!p1@NR3C2!1.00!8.99!NR3C2;;chr11:125034605..125034636,+!p2@PKNOX2!1.00!8.99!PKNOX2;;chr1:199996831..199996843,+!p4@NR5A2!1.00!8.99!NR5A2;;chr5:71803177..71803255,-!p1@ZNF366!1.00!8.99!ZNF366;;chr6:144289132..144289134,-!p3@PLAGL1!0.99!20.63!PLAGL1;;chr17:1959369..1959388,+!p2@HIC1!0.98!23.28!HIC1;;chr18:19749517..19749531,+!p3@GATA6!0.98!15.34!GATA6;;chr11:125034640..125034655,+!p1@PKNOX2!0.98!8.46!PKNOX2;;chr5:133451294..133451310,+!p2@TCF7!0.98!8.46!TCF7;;chr19:46806868..46806883,+!p3@HIF3A!0.98!8.46!HIF3A;;chr1:199996702..199996732,+!p5@NR5A2!0.98!8.46!NR5A2;;chr2:66662249..66662267,+!p2@MEIS1!0.97!32.80!MEIS1;;chr8:71316428..71316459,-!p2@NCOA2!0.97!14.28!NCOA2;;chr3:18486354..18486377,-!p2@SATB1!0.97!10.58!SATB1;;chr11:47279248..47279264,+!p3@NR1H3!0.97!9.52!NR1H3;;chr5:134369905..134369972,-!p1@PITX1!0.96!12.70!PITX1;;chr5:153857778..153857794,-!p1@HAND1!0.95!7.94!HAND1;;chr7:27170359..27170381,-!p1@HOXA4!0.95!7.94!HOXA4;;chr8:76452129..76452159,+!p5@HNF4G!0.95!7.94!HNF4G;;chr11:65554528..65554546,+!p1@OVOL1!0.95!7.94!OVOL1;;chr4:174451350..174451363,-!p3@HAND2!0.95!7.94!HAND2;;chr1:10754477..10754517,-!p1@CASZ1!0.93!12.70!CASZ1;;chr3:24536253..24536328,-!p1@THRB!0.92!14.28!THRB;;chr6:117198400..117198441,+!p1@RFX6!0.92!7.41!RFX6;;chr8:55370487..55370503,+!p1@SOX17!0.92!7.41!SOX17;;chr6:19837592..19837621,+!p1@ID4!0.91!46.03!ID4;;chr2:60780753..60780800,-!p1@BCL11A!0.91!37.03!BCL11A;;chr6:91006518..91006570,-!p1@BACH2!0.91!16.93!BACH2;;chr5:178368186..178368238,+!p1@ZNF454!0.90!12.70!ZNF454;;chr15:37392576..37392589,-!p12@MEIS2!0.90!8.46!MEIS2;;chr10:8096631..8096660,+!p1@GATA3!0.90!8.46!GATA3;;chr17:53342311..53342400,+!p1@HLF!0.90!7.94!HLF;;chr4:94749897..94749909,+!p1@ATOH1!0.90!6.88!ATOH1;;chr7:27183291..27183324,-!p1@HOXA5!0.90!6.88!HOXA5;;chr8:10588010..10588030,-!p1@SOX7!0.90!6.88!SOX7;;chr8:41508327..41508355,-!p1@NKX6-3!0.90!6.88!NKX6-3;;chr20:22565370..22565388,-!p2@FOXA2!0.90!6.88!FOXA2;;chr20:61051039..61051057,-!p1@GATA5!0.90!6.88!GATA5;;chr10:131762504..131762555,-!p1@EBF3!0.90!6.88!EBF3;;chr11:31839488..31839515,-!p3@PAX6!0.90!6.88!PAX6;;chr11:66188503..66188511,+!p1@NPAS4!0.90!6.88!NPAS4;;chr13:72441074..72441172,-!p2@DACH1!0.90!6.88!DACH1;;chr2:100759037..100759058,-!p2@AFF3!0.90!6.88!AFF3;;chr2:70142232..70142251,+!p1@MXD1!0.89!40.21!MXD1;;chr18:22932080..22932170,-!p1@ZNF521!0.89!30.15!ZNF521;;chr2:66662281..66662308,+!p1@MEIS1!0.89!24.34!MEIS1;;chr2:192015701..192015743,-!p1@STAT4!0.89!9.52!STAT4;;chr17:70117153..70117174,+!p1@SOX9!0.88!71.42!SOX9;;chr11:46299199..46299233,+!p1@CREB3L1!0.88!35.97!CREB3L1;;chr2:25475120..25475176,-!p2@DNMT3A!0.88!8.99!DNMT3A;;chr9:14314131..14314147,-!p2@NFIB!0.87!38.09!NFIB;;chr9:102584262..102584276,+!p1@NR4A3!0.87!14.81!NR4A3;;chr20:50179368..50179392,-!p2@NFATC2!0.87!8.46!NFATC2;;chr19:54041669..54041697,+!p2@ZNF331!0.87!6.35!ZNF331;;chr1:63788229..63788250,+!p1@FOXD3!0.87!6.35!FOXD3;;chr11:34645791..34645836,+!p3@EHF!0.87!6.35!EHF;;chr13:28543253..28543276,-!p5@CDX2!0.87!6.35!CDX2;;chr2:122042770..122042785,-!p1@TFCP2L1!0.87!6.35!TFCP2L1;;chr2:16080659..16080685,+!p1@MYCN!0.87!6.35!MYCN;;chr7:27183263..27183284,-!p2@HOXA5!0.87!6.35!HOXA5;;chr18:53089538..53089578,-!p14@TCF4!0.87!6.35!TCF4;;chr19:58220517..58220583,-!p1@ZNF154!0.86!20.63!ZNF154;;chr11:47279504..47279563,+!p1@NR1H3!0.86!14.81!NR1H3;;chr20:39317868..39317884,-!p1@MAFB!0.85!76.71!MAFB;;chr15:37392616..37392638,-!p2@MEIS2!0.85!20.10!MEIS2;;chrX:84498989..84499003,+!p1@ZNF711!0.85!8.46!ZNF711;;chr2:60780607..60780624,-!p2@BCL11A!0.84!19.04!BCL11A;;chr18:77155922..77155939,+!p1@NFATC1!0.84!16.93!NFATC1;;chr9:117150254..117150271,-!p1@AKNA!0.84!16.93!AKNA;;chr13:73636516..73636532,+!p3@KLF5!0.84!6.88!KLF5;;chr6:144329384..144329405,-!p1@PLAGL1!0.83!71.95!PLAGL1;;chr15:96873984..96873999,+!p3@NR2F2!0.83!45.50!NR2F2;;chr1:221052840..221052875,+!p4@HLX!0.83!6.88!HLX;;chr1:25291475..25291511,-!p2@RUNX3!0.83!5.82!RUNX3;;chr17:6926362..6926377,+!p1@BCL6B!0.83!5.82!BCL6B;;chr11:125034586..125034604,+!p3@PKNOX2!0.83!5.82!PKNOX2;;chr11:16629261..16629284,-!p1@SOX6!0.83!5.82!SOX6;;chr11:34535297..34535317,-!p1@ELF5!0.83!5.82!ELF5;;chr11:71955210..71955227,-!p1@PHOX2A!0.83!5.82!PHOX2A;;chr14:38064429..38064486,-!p1@FOXA1!0.83!5.82!FOXA1;;chr3:114819101..114819121,-!p7@ZBTB20!0.83!5.82!ZBTB20;;chr3:141043050..141043063,+!p22@ZBTB38!0.83!5.82!ZBTB38;;chr7:27170274..27170308,-!p3@HOXA4!0.83!5.82!HOXA4;;chr7:50343634..50343717,+!p2@IKZF1!0.83!5.82!IKZF1;;chr7:50344289..50344323,+!p1@IKZF1!0.83!5.82!IKZF1;;chr10:35484053..35484076,+!p1@C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| |expression_enrichment_score=chr20:43935474..43935490,+!p1@RBPJL!2.40!249.17!RBPJL;;chr6:134210243..134210257,+!p1@TCF21!2.08!118.50!TCF21;;chr1:201979743..201979762,+!p1@ELF3!2.04!108.98!ELF3;;chr1:27240455..27240474,-!p1@NR0B2!1.93!84.64!NR0B2;;chr4:174451370..174451387,-!p1@HAND2!1.89!76.71!HAND2;;chr1:201979703..201979721,+!p2@ELF3!1.87!72.48!ELF3;;chr16:85932760..85932775,+!p1@IRF8!1.86!71.95!IRF8;;chr5:149546334..149546364,+!p1@CDX1!1.81!63.48!CDX1;;chr8:76319876..76319926,+!p1@HNF4G!1.81!62.95!HNF4G;;chr19:4153613..4153652,+!p1@CREB3L3!1.79!61.37!CREB3L3;;chr13:28494130..28494168,+!p1@PDX1!1.75!55.02!PDX1;;chr1:214161272..214161322,+!p1@PROX1!1.65!60.31!PROX1;;chr20:62680984..62680999,-!p1@SOX18!1.65!57.66!SOX18;;chr11:34642612..34642646,+!p1@EHF!1.65!43.91!EHF;;chr16:86544113..86544145,+!p1@FOXF1!1.62!50.26!FOXF1;;chr13:72441315..72441454,-!p1@DACH1!1.61!76.71!DACH1;;chr6:34524093..34524135,-!p1@SPDEF!1.60!39.15!SPDEF;;chr2:182545234..182545252,-!p1@NEUROD1!1.59!38.09!NEUROD1;;chr20:42984330..42984364,+!p2@HNF4A!1.59!37.56!HNF4A;;chr1:40105299..40105326,-!p1@HEYL!1.57!35.97!HEYL;;chr8:11561684..11561751,+!p1@GATA4!1.54!33.33!GATA4;;chr16:79634595..79634620,-!p2@MAF!1.52!58.19!MAF;;chr6:1312325..1312340,+!p1@FOXQ1!1.49!48.14!FOXQ1;;chr1:209979467..209979494,-!p1@IRF6!1.49!33.86!IRF6;;chr21:39870339..39870443,-!p1@ERG!1.49!30.15!ERG;;chr19:46801639..46801699,+!p1@HIF3A!1.49!29.63!HIF3A;;chr18:19749386..19749404,+!p2@GATA6!1.45!38.09!GATA6;;chr15:53082521..53082549,-!p1@ONECUT1!1.43!25.92!ONECUT1;;chr11:16419037..16419064,-!p3@SOX6!1.43!25.92!SOX6;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.42!25.39!ZBED1;;chr2:145277882..145277967,-!p3@ZEB2!1.41!41.79!ZEB2;;chr18:55102628..55102646,+!p2@ONECUT2!1.41!24.86!ONECUT2;;chr19:50922187..50922204,+!p1@SPIB!1.40!24.34!SPIB;;chr20:43029862..43029900,+!p1@HNF4A!1.40!24.34!HNF4A;;chr8:76452097..76452126,+!p2@HNF4G!1.40!24.34!HNF4G;;chr10:23481233..23481249,+!p1@PTF1A!1.39!23.81!PTF1A;;chr12:100897130..100897149,+!p3@NR1H4!1.38!22.75!NR1H4;;chr7:15726296..15726315,-!p1@MEOX2!1.37!22.22!MEOX2;;chr19:46800289..46800327,+!p2@HIF3A!1.36!21.69!HIF3A;;chr1:151804244..151804310,-!p1@RORC!1.35!21.16!RORC;;chr18:55102598..55102623,+!p1@ONECUT2!1.35!21.16!ONECUT2;;chr16:79634624..79634642,-!p1@MAF!1.34!80.94!MAF;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.32!20.10!PEG3;;chr20:20348740..20348757,+!p1@INSM1!1.31!19.57!INSM1;;chr18:19749541..19749557,+!p1@GATA6!1.30!58.19!GATA6;;chr1:42801540..42801562,-!p4@FOXJ3!1.29!18.52!FOXJ3;;chr13:28543431..28543487,-!p1@CDX2!1.29!18.52!CDX2;;chr3:71355163..71355209,-!p5@FOXP1!1.27!24.34!FOXP1;;chr3:169381420..169381535,-!p1@MECOM!1.27!20.63!MECOM;;chr2:166326200..166326216,+!p1@CSRNP3!1.26!24.86!CSRNP3;;chr11:61520075..61520136,+!p1@C11orf9!1.25!34.92!C11orf9;;chr13:28543285..28543314,-!p2@CDX2!1.25!16.93!CDX2;;chr17:36105042..36105060,-!p1@HNF1B!1.25!16.93!HNF1B;;chrX:25034067..25034088,-!p1@ARX!1.24!16.40!ARX;;chr15:57511609..57511651,+!p2@TCF12!1.23!26.45!TCF12;;chr20:50159198..50159299,-!p1@NFATC2!1.23!23.28!NFATC2;;chr1:2985760..2985774,+!p1@PRDM16!1.23!15.87!PRDM16;;chr22:38380543..38380569,-!p1@SOX10!1.23!15.87!SOX10;;chr12:52445218..52445237,+!p1@NR4A1!1.22!194.15!NR4A1;;chr19:33793430..33793447,-!p1@CEBPA!1.20!61.37!CEBPA;;chr3:119500941..119500961,+!p1@NR1I2!1.20!14.81!NR1I2;;chr7:156803329..156803362,-!p1@MNX1!1.20!14.81!MNX1;;chr7:73038839..73038862,-!p1@MLXIPL!1.20!14.81!MLXIPL;;chr7:15726243..15726293,-!p2@MEOX2!1.18!14.28!MEOX2;;chr10:101292684..101292706,+!p1@NKX2-3!1.18!14.28!NKX2-3;;chr2:68592406..68592424,+!p1@PLEK!1.17!13.75!PLEK;;chr1:200011711..200011752,+!p3@NR5A2!1.17!13.75!NR5A2;;chr6:1389789..1389821,+!p1@FOXF2!1.16!18.52!FOXF2;;chr13:73633131..73633149,+!p1@KLF5!1.15!139.13!KLF5;;chr12:96588368..96588394,+!p3@ELK3!1.15!35.44!ELK3;;chr5:50679228..50679288,+!p1@ISL1!1.15!13.23!ISL1;;chr16:79634581..79634592,-!p4@MAF!1.15!13.23!MAF;;chr20:51588873..51588953,+!p1@TSHZ2!1.14!16.93!TSHZ2;;chr19:46367576..46367592,+!p1@FOXA3!1.14!12.70!FOXA3;;chr6:391743..391759,+!p1@IRF4!1.14!12.70!IRF4;;chr5:88178983..88179012,-!p1@MEF2C!1.13!95.75!MEF2C;;chr8:25902876..25902936,-!p1@EBF2!1.12!12.17!EBF2;;chr20:22564895..22564910,-!p1@FOXA2!1.12!12.17!FOXA2;;chr11:47400078..47400106,-!p1@SPI1!1.12!12.17!SPI1;;chr4:109087445..109087463,-!p1@LEF1!1.12!12.17!LEF1;;chr11:113930425..113930471,+!p1@ZBTB16!1.10!16.93!ZBTB16;;chr3:12330560..12330579,+!p1@PPARG!1.10!13.23!PPARG;;chr1:199996733..199996781,+!p1@NR5A2!1.10!11.64!NR5A2;;chr7:113726357..113726443,+!p1@FOXP2!1.09!19.57!FOXP2;;chr3:114819124..114819200,-!p3@ZBTB20!1.08!25.92!ZBTB20;;chr3:27763807..27763822,-!p1@EOMES!1.06!10.58!EOMES;;chr7:115608319..115608352,-!p4@TFEC!1.06!10.58!TFEC;;chr8:102504651..102504683,+!p1@GRHL2!1.06!10.58!GRHL2;;chr13:28494109..28494122,+!p2@PDX1!1.06!10.58!PDX1;;chr2:19558373..19558392,-!p1@OSR1!1.05!28.04!OSR1;;chr5:158526917..158526932,-!p1@EBF1!1.04!25.39!EBF1;;chr12:52437488..52437507,+!p2@NR4A1!1.04!10.05!NR4A1;;chrX:85403445..85403479,+!p2@DACH2!1.04!10.05!DACH2;;chr20:30433396..30433414,-!p1@FOXS1!1.04!10.05!FOXS1;;chr17:41739283..41739297,-!p1@MEOX1!1.04!10.05!MEOX1;;chr8:60031619..60031676,-!p1@TOX!1.03!21.16!TOX;;chr1:164528410..164528428,+!p1@PBX1!1.02!72.48!PBX1;;chr10:48355030..48355090,+!p1@ZNF488!1.02!12.17!ZNF488;;chr13:28543388..28543406,-!p3@CDX2!1.02!9.52!CDX2;;chr17:46671108..46671147,-!p1@HOXB5!1.02!9.52!HOXB5;;chr3:128212033..128212051,-!p1@GATA2!1.02!9.52!GATA2;;chr4:149363494..149363543,-!p1@NR3C2!1.00!8.99!NR3C2;;chr11:125034605..125034636,+!p2@PKNOX2!1.00!8.99!PKNOX2;;chr1:199996831..199996843,+!p4@NR5A2!1.00!8.99!NR5A2;;chr5:71803177..71803255,-!p1@ZNF366!1.00!8.99!ZNF366;;chr6:144289132..144289134,-!p3@PLAGL1!0.99!20.63!PLAGL1;;chr17:1959369..1959388,+!p2@HIC1!0.98!23.28!HIC1;;chr18:19749517..19749531,+!p3@GATA6!0.98!15.34!GATA6;;chr11:125034640..125034655,+!p1@PKNOX2!0.98!8.46!PKNOX2;;chr5:133451294..133451310,+!p2@TCF7!0.98!8.46!TCF7;;chr19:46806868..46806883,+!p3@HIF3A!0.98!8.46!HIF3A;;chr1:199996702..199996732,+!p5@NR5A2!0.98!8.46!NR5A2;;chr2:66662249..66662267,+!p2@MEIS1!0.97!32.80!MEIS1;;chr8:71316428..71316459,-!p2@NCOA2!0.97!14.28!NCOA2;;chr3:18486354..18486377,-!p2@SATB1!0.97!10.58!SATB1;;chr11:47279248..47279264,+!p3@NR1H3!0.97!9.52!NR1H3;;chr5:134369905..134369972,-!p1@PITX1!0.96!12.70!PITX1;;chr5:153857778..153857794,-!p1@HAND1!0.95!7.94!HAND1;;chr7:27170359..27170381,-!p1@HOXA4!0.95!7.94!HOXA4;;chr8:76452129..76452159,+!p5@HNF4G!0.95!7.94!HNF4G;;chr11:65554528..65554546,+!p1@OVOL1!0.95!7.94!OVOL1;;chr4:174451350..174451363,-!p3@HAND2!0.95!7.94!HAND2;;chr1:10754477..10754517,-!p1@CASZ1!0.93!12.70!CASZ1;;chr3:24536253..24536328,-!p1@THRB!0.92!14.28!THRB;;chr6:117198400..117198441,+!p1@RFX6!0.92!7.41!RFX6;;chr8:55370487..55370503,+!p1@SOX17!0.92!7.41!SOX17;;chr6:19837592..19837621,+!p1@ID4!0.91!46.03!ID4;;chr2:60780753..60780800,-!p1@BCL11A!0.91!37.03!BCL11A;;chr6:91006518..91006570,-!p1@BACH2!0.91!16.93!BACH2;;chr5:178368186..178368238,+!p1@ZNF454!0.90!12.70!ZNF454;;chr15:37392576..37392589,-!p12@MEIS2!0.90!8.46!MEIS2;;chr10:8096631..8096660,+!p1@GATA3!0.90!8.46!GATA3;;chr17:53342311..53342400,+!p1@HLF!0.90!7.94!HLF;;chr4:94749897..94749909,+!p1@ATOH1!0.90!6.88!ATOH1;;chr7:27183291..27183324,-!p1@HOXA5!0.90!6.88!HOXA5;;chr8:10588010..10588030,-!p1@SOX7!0.90!6.88!SOX7;;chr8:41508327..41508355,-!p1@NKX6-3!0.90!6.88!NKX6-3;;chr20:22565370..22565388,-!p2@FOXA2!0.90!6.88!FOXA2;;chr20:61051039..61051057,-!p1@GATA5!0.90!6.88!GATA5;;chr10:131762504..131762555,-!p1@EBF3!0.90!6.88!EBF3;;chr11:31839488..31839515,-!p3@PAX6!0.90!6.88!PAX6;;chr11:66188503..66188511,+!p1@NPAS4!0.90!6.88!NPAS4;;chr13:72441074..72441172,-!p2@DACH1!0.90!6.88!DACH1;;chr2:100759037..100759058,-!p2@AFF3!0.90!6.88!AFF3;;chr2:70142232..70142251,+!p1@MXD1!0.89!40.21!MXD1;;chr18:22932080..22932170,-!p1@ZNF521!0.89!30.15!ZNF521;;chr2:66662281..66662308,+!p1@MEIS1!0.89!24.34!MEIS1;;chr2:192015701..192015743,-!p1@STAT4!0.89!9.52!STAT4;;chr17:70117153..70117174,+!p1@SOX9!0.88!71.42!SOX9;;chr11:46299199..46299233,+!p1@CREB3L1!0.88!35.97!CREB3L1;;chr2:25475120..25475176,-!p2@DNMT3A!0.88!8.99!DNMT3A;;chr9:14314131..14314147,-!p2@NFIB!0.87!38.09!NFIB;;chr9:102584262..102584276,+!p1@NR4A3!0.87!14.81!NR4A3;;chr20:50179368..50179392,-!p2@NFATC2!0.87!8.46!NFATC2;;chr19:54041669..54041697,+!p2@ZNF331!0.87!6.35!ZNF331;;chr1:63788229..63788250,+!p1@FOXD3!0.87!6.35!FOXD3;;chr11:34645791..34645836,+!p3@EHF!0.87!6.35!EHF;;chr13:28543253..28543276,-!p5@CDX2!0.87!6.35!CDX2;;chr2:122042770..122042785,-!p1@TFCP2L1!0.87!6.35!TFCP2L1;;chr2:16080659..16080685,+!p1@MYCN!0.87!6.35!MYCN;;chr7:27183263..27183284,-!p2@HOXA5!0.87!6.35!HOXA5;;chr18:53089538..53089578,-!p14@TCF4!0.87!6.35!TCF4;;chr19:58220517..58220583,-!p1@ZNF154!0.86!20.63!ZNF154;;chr11:47279504..47279563,+!p1@NR1H3!0.86!14.81!NR1H3;;chr20:39317868..39317884,-!p1@MAFB!0.85!76.71!MAFB;;chr15:37392616..37392638,-!p2@MEIS2!0.85!20.10!MEIS2;;chrX:84498989..84499003,+!p1@ZNF711!0.85!8.46!ZNF711;;chr2:60780607..60780624,-!p2@BCL11A!0.84!19.04!BCL11A;;chr18:77155922..77155939,+!p1@NFATC1!0.84!16.93!NFATC1;;chr9:117150254..117150271,-!p1@AKNA!0.84!16.93!AKNA;;chr13:73636516..73636532,+!p3@KLF5!0.84!6.88!KLF5;;chr6:144329384..144329405,-!p1@PLAGL1!0.83!71.95!PLAGL1;;chr15:96873984..96873999,+!p3@NR2F2!0.83!45.50!NR2F2;;chr1:221052840..221052875,+!p4@HLX!0.83!6.88!HLX;;chr1:25291475..25291511,-!p2@RUNX3!0.83!5.82!RUNX3;;chr17:6926362..6926377,+!p1@BCL6B!0.83!5.82!BCL6B;;chr11:125034586..125034604,+!p3@PKNOX2!0.83!5.82!PKNOX2;;chr11:16629261..16629284,-!p1@SOX6!0.83!5.82!SOX6;;chr11:34535297..34535317,-!p1@ELF5!0.83!5.82!ELF5;;chr11:71955210..71955227,-!p1@PHOX2A!0.83!5.82!PHOX2A;;chr14:38064429..38064486,-!p1@FOXA1!0.83!5.82!FOXA1;;chr3:114819101..114819121,-!p7@ZBTB20!0.83!5.82!ZBTB20;;chr3:141043050..141043063,+!p22@ZBTB38!0.83!5.82!ZBTB38;;chr7:27170274..27170308,-!p3@HOXA4!0.83!5.82!HOXA4;;chr7:50343634..50343717,+!p2@IKZF1!0.83!5.82!IKZF1;;chr7:50344289..50344323,+!p1@IKZF1!0.83!5.82!IKZF1;;chr10:35484053..35484076,+!p1@C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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000956;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001871;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001890;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001893;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003528 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 37: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/temporal%2520lobe%252c%2520fetal%252c%2520donor1%252c%2520tech_rep2.CNhs12996.10063-101H9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/temporal%2520lobe%252c%2520fetal%252c%2520donor1%252c%2520tech_rep2.CNhs12996.10063-101H9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/temporal%2520lobe%252c%2520fetal%252c%2520donor1%252c%2520tech_rep2.CNhs12996.10063-101H9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/temporal%2520lobe%252c%2520fetal%252c%2520donor1%252c%2520tech_rep2.CNhs12996.10063-101H9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/temporal%2520lobe%252c%2520fetal%252c%2520donor1%252c%2520tech_rep2.CNhs12996.10063-101H9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10063-101H9 | |id=FF:10063-101H9 | ||
|is_a=EFO:0002091;;FF:0010063 | |is_a=EFO:0002091;;FF:0010063 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11772!CNhs12996 | |||
|library_id_phase_based=2:CNhs12996 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10063 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10063 | |||
|name=temporal lobe, fetal, donor1 | |name=temporal lobe, fetal, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 45: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11772 & CNhs12996,LSID820,release010,COMPLETED | |profile_hcage=CNhs11772 & CNhs12996,LSID820,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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Line 62: | Line 78: | ||
|rna_weight_ug=50 | |rna_weight_ug=50 | ||
|sample_age= | |sample_age= | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 83: | Line 100: | ||
|top_motifs=HNF4A_NR2F1,2:4.8139725593;HNF1A:4.52657227328;RBPJ:3.28359189676;GATA6:3.20948155865;RXRA_VDR{dimer}:3.0707707838;DBP:2.61315944344;SPZ1:2.5774105518;IKZF2:2.46787343628;NR6A1:2.460559289;ONECUT1,2:2.41081781134;TBP:2.28886185678;ALX1:2.27681816163;TLX2:2.25874297633;FOXA2:2.24589502184;NR5A1,2:2.20813494636;SNAI1..3:2.10453064775;LMO2:1.96785794989;RREB1:1.91104531448;MYBL2:1.84250374687;MYFfamily:1.83864234287;ZEB1:1.79368328248;FOXM1:1.70699565802;MYOD1:1.67623212333;ATF6:1.58854918476;EN1,2:1.50519514369;MTF1:1.38925572745;HMX1:1.38741212885;GCM1,2:1.36615770919;SRF:1.32703671068;MAZ:1.32446408081;FOXD3:1.30564058527;TFAP4:1.29964819945;POU6F1:1.22864659931;EP300:1.22797503583;HIC1:1.13771342987;T:1.13018391093;PAX3,7:1.12869529896;TFCP2:1.11878430121;MZF1:1.11290969007;FOX{F1,F2,J1}:1.09980223275;PBX1:1.08956008632;PRDM1:1.08124584122;ZNF384:1.06312633093;TAL1_TCF{3,4,12}:1.04962036554;FOXP1:1.04820924314;UFEwm:1.01457645862;NKX2-3_NKX2-5:1.00751657632;SP1:1.00696196263;FOXO1,3,4:0.982030114867;GTF2I:0.974287139375;HMGA1,2:0.967358569044;ZNF148:0.947732678454;NKX3-2:0.937203345918;PDX1:0.930715502283;HAND1,2:0.92527919678;KLF4:0.921802293617;PATZ1:0.912298201655;MTE{core}:0.904552488611;XCPE1{core}:0.895199072397;ESR1:0.887665941543;XBP1:0.875834470836;MED-1{core}:0.870390437979;GZF1:0.839984806505;FOX{D1,D2}:0.83640550544;GLI1..3:0.793539738007;CDX1,2,4:0.772242890889;REST:0.763874278788;TLX1..3_NFIC{dimer}:0.762519503263;POU3F1..4:0.755451261333;STAT1,3:0.744804058129;ZNF238:0.735102765771;IRF7:0.713960632855;GATA4:0.683502435322;NKX2-1,4:0.678925854451;NHLH1,2:0.649201158711;IRF1,2:0.584928722677;PAX5:0.572433560976;IKZF1:0.563021120144;NKX6-1,2:0.527531908901;TFAP2{A,C}:0.508680487363;CDC5L:0.502725986668;PITX1..3:0.499783838121;GFI1B:0.4942470263;ZNF423:0.484907900698;NR3C1:0.475552790028;ZBTB16:0.457696830979;BREu{core}:0.453864097533;POU5F1:0.444623083773;HOX{A6,A7,B6,B7}:0.424267399641;SOX5:0.422764137178;FOXN1:0.416980626307;TFAP2B:0.411696119812;HOXA9_MEIS1:0.388071682767;EGR1..3:0.372564073015;SMAD1..7,9:0.36156613472;POU1F1:0.342620566042;TBX4,5:0.300202594997;DMAP1_NCOR{1,2}_SMARC:0.283196194455;SOX2:0.281584549705;LHX3,4:0.279935880441;EBF1:0.270920694271;ETS1,2:0.270427536719;ZFP161:0.260023366034;MAFB:0.211428806536;NANOG{mouse}:0.193228192275;ZBTB6:0.186931543035;ALX4:0.183107958309;TEAD1:0.180858011192;ESRRA:0.174035263611;ADNP_IRX_SIX_ZHX:0.168718035641;VSX1,2:0.156580862365;ARID5B:0.141456295235;NKX2-2,8:0.137815940654;NKX3-1:0.133462306859;FOXL1:0.124230744418;NR1H4:0.0819785235873;PAX6:0.0794724883358;CUX2:0.0598520826802;TOPORS:0.0509308499611;ATF2:0.0473555813032;AR:0.0423647096552;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0269758647187;GTF2A1,2:0.0155926992631;JUN:0.00564047745364;SPIB:-0.0206468099186;NFATC1..3:-0.051161994854;RXR{A,B,G}:-0.0571021864762;RUNX1..3:-0.0696326175554;STAT2,4,6:-0.0883076380905;NANOG:-0.0946716458886;SPI1:-0.0960938935034;SOX17:-0.105586183568;ZIC1..3:-0.109346527935;EVI1:-0.111796649814;GFI1:-0.156683359212;FOX{I1,J2}:-0.16885572863;NFY{A,B,C}:-0.20882029946;TGIF1:-0.240776538781;AHR_ARNT_ARNT2:-0.262354229877;LEF1_TCF7_TCF7L1,2:-0.270019348716;BPTF:-0.272198958978;SOX{8,9,10}:-0.296991649267;RFX2..5_RFXANK_RFXAP:-0.304234751525;FOXP3:-0.309469304731;bHLH_family:-0.335011734545;E2F1..5:-0.337391170371;SREBF1,2:-0.338749407385;RFX1:-0.344974218086;ATF5_CREB3:-0.371186268044;ATF4:-0.372960617272;YY1:-0.381662942065;ELF1,2,4:-0.382774884312;NFKB1_REL_RELA:-0.396335831091;AIRE:-0.458514527943;PRRX1,2:-0.45980774765;ZNF143:-0.534668758672;NRF1:-0.591918455874;MEF2{A,B,C,D}:-0.609023908624;HSF1,2:-0.630200293974;PAX1,9:-0.671938913856;FOSL2:-0.759255702715;HLF:-0.798533963017;POU2F1..3:-0.839706917901;OCT4_SOX2{dimer}:-0.840693960056;FOXQ1:-0.858599578736;HES1:-0.886782028249;CREB1:-0.889391609954;RORA:-0.891242845725;TP53:-0.934830344234;HBP1_HMGB_SSRP1_UBTF:-0.959894195969;PAX2:-0.983048064307;TEF:-0.985994563543;CEBPA,B_DDIT3:-1.0778637538;NFE2:-1.08767655368;TFDP1:-1.09808031236;BACH2:-1.14089792319;HOX{A4,D4}:-1.14156131708;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.16897794106;FOS_FOS{B,L1}_JUN{B,D}:-1.17325526196;PPARG:-1.19261567162;HOX{A5,B5}:-1.22013774549;NFE2L1:-1.24011485943;NFIL3:-1.31678848387;ELK1,4_GABP{A,B1}:-1.32226482221;CRX:-1.34776315094;PAX4:-1.36964833684;STAT5{A,B}:-1.39718483024;PAX8:-1.43603212971;NFE2L2:-1.48873002776;NFIX:-1.52565045225;MYB:-1.54349983394;HIF1A:-1.89027335561PRRX1,2:4.9037064643;NKX2-3_NKX2-5:4.43838095548;MZF1:4.28954645966;FOXM1:4.24071978795;POU5F1:3.95473056703;SOX2:3.88884783726;HOXA9_MEIS1:3.85950164057;AHR_ARNT_ARNT2:3.82731316301;MED-1{core}:3.7303480966;ZFP161:3.66990383987;OCT4_SOX2{dimer}:3.54947738736;POU1F1:3.49560539871;ZNF384:3.43221210809;BREu{core}:3.42532621511;CDC5L:3.31314660137;FOXP1:3.30681612121;POU6F1:3.24897680292;EGR1..3:3.22150104559;ADNP_IRX_SIX_ZHX:3.19727419294;FOXD3:3.19071741278;PRDM1:3.13386396055;POU3F1..4:3.12148814383;MTE{core}:2.99440746525;PATZ1:2.98077120896;ALX1:2.95398503291;CUX2:2.90300339603;T:2.83158074863;SOX17:2.82283900735;RREB1:2.81065440275;TFDP1:2.68545155459;HMGA1,2:2.663132212;RFX1:2.64899312275;IKZF2:2.64101289825;PAX4:2.62687653055;TFAP2B:2.61329583132;MYFfamily:2.58422379872;PITX1..3:2.57813872037;NKX6-1,2:2.52038823885;GTF2I:2.40278164382;NHLH1,2:2.37406134868;REST:2.34701514644;SOX{8,9,10}:2.30614391462;DBP:2.3040217492;ONECUT1,2:2.27968585997;ZIC1..3:2.2616408028;BPTF:2.21895389611;TOPORS:2.20659959273;PAX5:2.17462148226;GATA4:2.16844944743;LHX3,4:2.13234581822;ATF2:2.0880876215;TGIF1:2.084419156;LEF1_TCF7_TCF7L1,2:2.04678696389;MAZ:1.99112432101;TEF:1.9620402195;HOX{A4,D4}:1.92446629409;ZBTB6:1.9133380816;GFI1B:1.90292024455;SMAD1..7,9:1.85011013127;NRF1:1.83712272424;ARID5B:1.71523129996;KLF4:1.68936842127;SOX5:1.64305398988;EVI1:1.5988904248;HIC1:1.59547974476;RBPJ:1.51620166494;GFI1:1.46141986447;NANOG:1.4571487311;MTF1:1.3919715636;AIRE:1.36928597622;GCM1,2:1.34653517381;LMO2:1.3042821177;YY1:1.2680241486;ZBTB16:1.24053649148;ZNF143:1.18176181207;JUN:0.998988559522;EP300:0.965960067283;FOXL1:0.939049537658;TLX2:0.911274687499;PAX6:0.879105187521;GZF1:0.857621536189;STAT1,3:0.842708041987;NKX3-1:0.831882307701;CDX1,2,4:0.8004291958;RFX2..5_RFXANK_RFXAP:0.771624780399;PAX8:0.751941971994;PBX1:0.749565072082;ZNF423:0.729429114449;RORA:0.7251061959;PAX1,9:0.639128026188;FOXN1:0.618242733668;FOXA2:0.592860077554;UFEwm:0.581176475785;GTF2A1,2:0.504814541939;FOXQ1:0.474847399858;HBP1_HMGB_SSRP1_UBTF:0.460699627296;FOX{F1,F2,J1}:0.436629130647;CREB1:0.384171241828;NFY{A,B,C}:0.362842821784;SPZ1:0.356927593248;PAX3,7:0.338002796219;ATF5_CREB3:0.316743370904;MAFB:0.310165431833;CRX:0.303543323895;SP1:0.29715302688;HAND1,2:0.211772569355;HMX1:0.177636708057;MEF2{A,B,C,D}:0.167157145958;FOXP3:0.154985322103;XCPE1{core}:0.152515914698;POU2F1..3:0.141286151336;XBP1:0.0706030989462;MYOD1:0.0412534426271;GATA6:-0.00173396402615;NKX3-2:-0.0668375958263;MYBL2:-0.0987946483587;NR1H4:-0.104202951874;ELK1,4_GABP{A,B1}:-0.148067520023;ATF4:-0.157779103706;DMAP1_NCOR{1,2}_SMARC:-0.251481649487;ZEB1:-0.254419287074;ZNF238:-0.262199907142;NANOG{mouse}:-0.284755456104;E2F1..5:-0.299739530939;FOX{I1,J2}:-0.329395743963;NKX2-1,4:-0.417396050345;PDX1:-0.432830704822;FOX{D1,D2}:-0.433095531332;NFIL3:-0.45784817485;HOX{A5,B5}:-0.462004601622;EBF1:-0.47131109607;HNF1A:-0.481045211092;TLX1..3_NFIC{dimer}:-0.506765484269;MYB:-0.536225767133;VSX1,2:-0.568204205927;SPIB:-0.593705025178;STAT2,4,6:-0.594428849647;SNAI1..3:-0.600712578318;SREBF1,2:-0.616940118973;PAX2:-0.649829171453;TFAP2{A,C}:-0.720027006021;TAL1_TCF{3,4,12}:-0.728012465836;TEAD1:-0.741568498789;HNF4A_NR2F1,2:-0.767352000104;TFAP4:-0.78210937824;TBP:-0.792847898253;SPI1:-0.793084266928;NR3C1:-0.808201029299;ALX4:-0.832702011545;PPARG:-0.862521565197;bHLH_family:-0.892808526593;NFE2L2:-0.963273724278;HOX{A6,A7,B6,B7}:-0.979326186445;HIF1A:-0.981326770139;IRF7:-1.02207418963;NKX2-2,8:-1.05008289437;RUNX1..3:-1.05546714333;CEBPA,B_DDIT3:-1.07847521838;IRF1,2:-1.08084812896;NFATC1..3:-1.08971389735;NFKB1_REL_RELA:-1.09477866225;HSF1,2:-1.14053744595;AR:-1.15259691671;FOS_FOS{B,L1}_JUN{B,D}:-1.15327807561;FOSL2:-1.15641499403;GLI1..3:-1.16398165843;NR5A1,2:-1.164590776;ZNF148:-1.18152977235;NR6A1:-1.21249681161;ESRRA:-1.22261303012;NFE2:-1.26019746062;NFE2L1:-1.26197667366;FOXO1,3,4:-1.27242932119;ETS1,2:-1.27291559424;EN1,2:-1.29170748984;BACH2:-1.34300484946;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.35391330623;IKZF1:-1.3729456514;TP53:-1.44516870345;STAT5{A,B}:-1.48560263062;TFCP2:-1.53229957881;HES1:-1.56004187949;ESR1:-1.60834429583;ATF6:-1.66037090964;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.71016862372;TBX4,5:-1.74107797012;HLF:-1.78837050465;ELF1,2,4:-1.87658493375;NFIX:-1.92485593461;SRF:-1.93951669512;RXR{A,B,G}:-2.01671933671;RXRA_VDR{dimer}:-2.64846133851 | |top_motifs=HNF4A_NR2F1,2:4.8139725593;HNF1A:4.52657227328;RBPJ:3.28359189676;GATA6:3.20948155865;RXRA_VDR{dimer}:3.0707707838;DBP:2.61315944344;SPZ1:2.5774105518;IKZF2:2.46787343628;NR6A1:2.460559289;ONECUT1,2:2.41081781134;TBP:2.28886185678;ALX1:2.27681816163;TLX2:2.25874297633;FOXA2:2.24589502184;NR5A1,2:2.20813494636;SNAI1..3:2.10453064775;LMO2:1.96785794989;RREB1:1.91104531448;MYBL2:1.84250374687;MYFfamily:1.83864234287;ZEB1:1.79368328248;FOXM1:1.70699565802;MYOD1:1.67623212333;ATF6:1.58854918476;EN1,2:1.50519514369;MTF1:1.38925572745;HMX1:1.38741212885;GCM1,2:1.36615770919;SRF:1.32703671068;MAZ:1.32446408081;FOXD3:1.30564058527;TFAP4:1.29964819945;POU6F1:1.22864659931;EP300:1.22797503583;HIC1:1.13771342987;T:1.13018391093;PAX3,7:1.12869529896;TFCP2:1.11878430121;MZF1:1.11290969007;FOX{F1,F2,J1}:1.09980223275;PBX1:1.08956008632;PRDM1:1.08124584122;ZNF384:1.06312633093;TAL1_TCF{3,4,12}:1.04962036554;FOXP1:1.04820924314;UFEwm:1.01457645862;NKX2-3_NKX2-5:1.00751657632;SP1:1.00696196263;FOXO1,3,4:0.982030114867;GTF2I:0.974287139375;HMGA1,2:0.967358569044;ZNF148:0.947732678454;NKX3-2:0.937203345918;PDX1:0.930715502283;HAND1,2:0.92527919678;KLF4:0.921802293617;PATZ1:0.912298201655;MTE{core}:0.904552488611;XCPE1{core}:0.895199072397;ESR1:0.887665941543;XBP1:0.875834470836;MED-1{core}:0.870390437979;GZF1:0.839984806505;FOX{D1,D2}:0.83640550544;GLI1..3:0.793539738007;CDX1,2,4:0.772242890889;REST:0.763874278788;TLX1..3_NFIC{dimer}:0.762519503263;POU3F1..4:0.755451261333;STAT1,3:0.744804058129;ZNF238:0.735102765771;IRF7:0.713960632855;GATA4:0.683502435322;NKX2-1,4:0.678925854451;NHLH1,2:0.649201158711;IRF1,2:0.584928722677;PAX5:0.572433560976;IKZF1:0.563021120144;NKX6-1,2:0.527531908901;TFAP2{A,C}:0.508680487363;CDC5L:0.502725986668;PITX1..3:0.499783838121;GFI1B:0.4942470263;ZNF423:0.484907900698;NR3C1:0.475552790028;ZBTB16:0.457696830979;BREu{core}:0.453864097533;POU5F1:0.444623083773;HOX{A6,A7,B6,B7}:0.424267399641;SOX5:0.422764137178;FOXN1:0.416980626307;TFAP2B:0.411696119812;HOXA9_MEIS1:0.388071682767;EGR1..3:0.372564073015;SMAD1..7,9:0.36156613472;POU1F1:0.342620566042;TBX4,5:0.300202594997;DMAP1_NCOR{1,2}_SMARC:0.283196194455;SOX2:0.281584549705;LHX3,4:0.279935880441;EBF1:0.270920694271;ETS1,2:0.270427536719;ZFP161:0.260023366034;MAFB:0.211428806536;NANOG{mouse}:0.193228192275;ZBTB6:0.186931543035;ALX4:0.183107958309;TEAD1:0.180858011192;ESRRA:0.174035263611;ADNP_IRX_SIX_ZHX:0.168718035641;VSX1,2:0.156580862365;ARID5B:0.141456295235;NKX2-2,8:0.137815940654;NKX3-1:0.133462306859;FOXL1:0.124230744418;NR1H4:0.0819785235873;PAX6:0.0794724883358;CUX2:0.0598520826802;TOPORS:0.0509308499611;ATF2:0.0473555813032;AR:0.0423647096552;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.0269758647187;GTF2A1,2:0.0155926992631;JUN:0.00564047745364;SPIB:-0.0206468099186;NFATC1..3:-0.051161994854;RXR{A,B,G}:-0.0571021864762;RUNX1..3:-0.0696326175554;STAT2,4,6:-0.0883076380905;NANOG:-0.0946716458886;SPI1:-0.0960938935034;SOX17:-0.105586183568;ZIC1..3:-0.109346527935;EVI1:-0.111796649814;GFI1:-0.156683359212;FOX{I1,J2}:-0.16885572863;NFY{A,B,C}:-0.20882029946;TGIF1:-0.240776538781;AHR_ARNT_ARNT2:-0.262354229877;LEF1_TCF7_TCF7L1,2:-0.270019348716;BPTF:-0.272198958978;SOX{8,9,10}:-0.296991649267;RFX2..5_RFXANK_RFXAP:-0.304234751525;FOXP3:-0.309469304731;bHLH_family:-0.335011734545;E2F1..5:-0.337391170371;SREBF1,2:-0.338749407385;RFX1:-0.344974218086;ATF5_CREB3:-0.371186268044;ATF4:-0.372960617272;YY1:-0.381662942065;ELF1,2,4:-0.382774884312;NFKB1_REL_RELA:-0.396335831091;AIRE:-0.458514527943;PRRX1,2:-0.45980774765;ZNF143:-0.534668758672;NRF1:-0.591918455874;MEF2{A,B,C,D}:-0.609023908624;HSF1,2:-0.630200293974;PAX1,9:-0.671938913856;FOSL2:-0.759255702715;HLF:-0.798533963017;POU2F1..3:-0.839706917901;OCT4_SOX2{dimer}:-0.840693960056;FOXQ1:-0.858599578736;HES1:-0.886782028249;CREB1:-0.889391609954;RORA:-0.891242845725;TP53:-0.934830344234;HBP1_HMGB_SSRP1_UBTF:-0.959894195969;PAX2:-0.983048064307;TEF:-0.985994563543;CEBPA,B_DDIT3:-1.0778637538;NFE2:-1.08767655368;TFDP1:-1.09808031236;BACH2:-1.14089792319;HOX{A4,D4}:-1.14156131708;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.16897794106;FOS_FOS{B,L1}_JUN{B,D}:-1.17325526196;PPARG:-1.19261567162;HOX{A5,B5}:-1.22013774549;NFE2L1:-1.24011485943;NFIL3:-1.31678848387;ELK1,4_GABP{A,B1}:-1.32226482221;CRX:-1.34776315094;PAX4:-1.36964833684;STAT5{A,B}:-1.39718483024;PAX8:-1.43603212971;NFE2L2:-1.48873002776;NFIX:-1.52565045225;MYB:-1.54349983394;HIF1A:-1.89027335561PRRX1,2:4.9037064643;NKX2-3_NKX2-5:4.43838095548;MZF1:4.28954645966;FOXM1:4.24071978795;POU5F1:3.95473056703;SOX2:3.88884783726;HOXA9_MEIS1:3.85950164057;AHR_ARNT_ARNT2:3.82731316301;MED-1{core}:3.7303480966;ZFP161:3.66990383987;OCT4_SOX2{dimer}:3.54947738736;POU1F1:3.49560539871;ZNF384:3.43221210809;BREu{core}:3.42532621511;CDC5L:3.31314660137;FOXP1:3.30681612121;POU6F1:3.24897680292;EGR1..3:3.22150104559;ADNP_IRX_SIX_ZHX:3.19727419294;FOXD3:3.19071741278;PRDM1:3.13386396055;POU3F1..4:3.12148814383;MTE{core}:2.99440746525;PATZ1:2.98077120896;ALX1:2.95398503291;CUX2:2.90300339603;T:2.83158074863;SOX17:2.82283900735;RREB1:2.81065440275;TFDP1:2.68545155459;HMGA1,2:2.663132212;RFX1:2.64899312275;IKZF2:2.64101289825;PAX4:2.62687653055;TFAP2B:2.61329583132;MYFfamily:2.58422379872;PITX1..3:2.57813872037;NKX6-1,2:2.52038823885;GTF2I:2.40278164382;NHLH1,2:2.37406134868;REST:2.34701514644;SOX{8,9,10}:2.30614391462;DBP:2.3040217492;ONECUT1,2:2.27968585997;ZIC1..3:2.2616408028;BPTF:2.21895389611;TOPORS:2.20659959273;PAX5:2.17462148226;GATA4:2.16844944743;LHX3,4:2.13234581822;ATF2:2.0880876215;TGIF1:2.084419156;LEF1_TCF7_TCF7L1,2:2.04678696389;MAZ:1.99112432101;TEF:1.9620402195;HOX{A4,D4}:1.92446629409;ZBTB6:1.9133380816;GFI1B:1.90292024455;SMAD1..7,9:1.85011013127;NRF1:1.83712272424;ARID5B:1.71523129996;KLF4:1.68936842127;SOX5:1.64305398988;EVI1:1.5988904248;HIC1:1.59547974476;RBPJ:1.51620166494;GFI1:1.46141986447;NANOG:1.4571487311;MTF1:1.3919715636;AIRE:1.36928597622;GCM1,2:1.34653517381;LMO2:1.3042821177;YY1:1.2680241486;ZBTB16:1.24053649148;ZNF143:1.18176181207;JUN:0.998988559522;EP300:0.965960067283;FOXL1:0.939049537658;TLX2:0.911274687499;PAX6:0.879105187521;GZF1:0.857621536189;STAT1,3:0.842708041987;NKX3-1:0.831882307701;CDX1,2,4:0.8004291958;RFX2..5_RFXANK_RFXAP:0.771624780399;PAX8:0.751941971994;PBX1:0.749565072082;ZNF423:0.729429114449;RORA:0.7251061959;PAX1,9:0.639128026188;FOXN1:0.618242733668;FOXA2:0.592860077554;UFEwm:0.581176475785;GTF2A1,2:0.504814541939;FOXQ1:0.474847399858;HBP1_HMGB_SSRP1_UBTF:0.460699627296;FOX{F1,F2,J1}:0.436629130647;CREB1:0.384171241828;NFY{A,B,C}:0.362842821784;SPZ1:0.356927593248;PAX3,7:0.338002796219;ATF5_CREB3:0.316743370904;MAFB:0.310165431833;CRX:0.303543323895;SP1:0.29715302688;HAND1,2:0.211772569355;HMX1:0.177636708057;MEF2{A,B,C,D}:0.167157145958;FOXP3:0.154985322103;XCPE1{core}:0.152515914698;POU2F1..3:0.141286151336;XBP1:0.0706030989462;MYOD1:0.0412534426271;GATA6:-0.00173396402615;NKX3-2:-0.0668375958263;MYBL2:-0.0987946483587;NR1H4:-0.104202951874;ELK1,4_GABP{A,B1}:-0.148067520023;ATF4:-0.157779103706;DMAP1_NCOR{1,2}_SMARC:-0.251481649487;ZEB1:-0.254419287074;ZNF238:-0.262199907142;NANOG{mouse}:-0.284755456104;E2F1..5:-0.299739530939;FOX{I1,J2}:-0.329395743963;NKX2-1,4:-0.417396050345;PDX1:-0.432830704822;FOX{D1,D2}:-0.433095531332;NFIL3:-0.45784817485;HOX{A5,B5}:-0.462004601622;EBF1:-0.47131109607;HNF1A:-0.481045211092;TLX1..3_NFIC{dimer}:-0.506765484269;MYB:-0.536225767133;VSX1,2:-0.568204205927;SPIB:-0.593705025178;STAT2,4,6:-0.594428849647;SNAI1..3:-0.600712578318;SREBF1,2:-0.616940118973;PAX2:-0.649829171453;TFAP2{A,C}:-0.720027006021;TAL1_TCF{3,4,12}:-0.728012465836;TEAD1:-0.741568498789;HNF4A_NR2F1,2:-0.767352000104;TFAP4:-0.78210937824;TBP:-0.792847898253;SPI1:-0.793084266928;NR3C1:-0.808201029299;ALX4:-0.832702011545;PPARG:-0.862521565197;bHLH_family:-0.892808526593;NFE2L2:-0.963273724278;HOX{A6,A7,B6,B7}:-0.979326186445;HIF1A:-0.981326770139;IRF7:-1.02207418963;NKX2-2,8:-1.05008289437;RUNX1..3:-1.05546714333;CEBPA,B_DDIT3:-1.07847521838;IRF1,2:-1.08084812896;NFATC1..3:-1.08971389735;NFKB1_REL_RELA:-1.09477866225;HSF1,2:-1.14053744595;AR:-1.15259691671;FOS_FOS{B,L1}_JUN{B,D}:-1.15327807561;FOSL2:-1.15641499403;GLI1..3:-1.16398165843;NR5A1,2:-1.164590776;ZNF148:-1.18152977235;NR6A1:-1.21249681161;ESRRA:-1.22261303012;NFE2:-1.26019746062;NFE2L1:-1.26197667366;FOXO1,3,4:-1.27242932119;ETS1,2:-1.27291559424;EN1,2:-1.29170748984;BACH2:-1.34300484946;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.35391330623;IKZF1:-1.3729456514;TP53:-1.44516870345;STAT5{A,B}:-1.48560263062;TFCP2:-1.53229957881;HES1:-1.56004187949;ESR1:-1.60834429583;ATF6:-1.66037090964;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.71016862372;TBX4,5:-1.74107797012;HLF:-1.78837050465;ELF1,2,4:-1.87658493375;NFIX:-1.92485593461;SRF:-1.93951669512;RXR{A,B,G}:-2.01671933671;RXRA_VDR{dimer}:-2.64846133851 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10063-101H9;search_select_hide=table117:FF:10063-101H9 | |||
}} | }} |
Latest revision as of 12:18, 3 June 2020
Name: | temporal lobe, fetal, donor1 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs11772,CNhs12996 |
Sample type: | tissues |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
No results for this sample
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11772
library id: CNhs12996This sample isn't target for the analysis
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11772
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.0726 |
10 | 10 | 0.0945 |
100 | 100 | 0.53 |
101 | 101 | 0.819 |
102 | 102 | 0.869 |
103 | 103 | 0.0508 |
104 | 104 | 0.105 |
105 | 105 | 0.188 |
106 | 106 | 0.0383 |
107 | 107 | 0.129 |
108 | 108 | 0.999 |
109 | 109 | 4.6965e-4 |
11 | 11 | 0.025 |
110 | 110 | 0.163 |
111 | 111 | 0.318 |
112 | 112 | 0.254 |
113 | 113 | 0.283 |
114 | 114 | 0.0553 |
115 | 115 | 0.765 |
116 | 116 | 0.403 |
117 | 117 | 0.0261 |
118 | 118 | 0.254 |
119 | 119 | 0.267 |
12 | 12 | 0.563 |
120 | 120 | 0.296 |
121 | 121 | 0.324 |
122 | 122 | 0.577 |
123 | 123 | 0.0924 |
124 | 124 | 0.347 |
125 | 125 | 0.381 |
126 | 126 | 0.0222 |
127 | 127 | 0.216 |
128 | 128 | 0.17 |
129 | 129 | 0.403 |
13 | 13 | 0.0054 |
130 | 130 | 0.0672 |
131 | 131 | 0.644 |
132 | 132 | 0.727 |
133 | 133 | 0.356 |
134 | 134 | 0.814 |
135 | 135 | 0.719 |
136 | 136 | 0.00994 |
137 | 137 | 0.423 |
138 | 138 | 0.676 |
139 | 139 | 0.105 |
14 | 14 | 0.66 |
140 | 140 | 0.73 |
141 | 141 | 0.425 |
142 | 142 | 0.842 |
143 | 143 | 0.00585 |
144 | 144 | 0.754 |
145 | 145 | 0.305 |
146 | 146 | 0.48 |
147 | 147 | 0.956 |
148 | 148 | 0.0435 |
149 | 149 | 0.105 |
15 | 15 | 0.0668 |
150 | 150 | 0.247 |
151 | 151 | 0.437 |
152 | 152 | 0.0454 |
153 | 153 | 0.817 |
154 | 154 | 0.466 |
155 | 155 | 0.636 |
156 | 156 | 0.527 |
157 | 157 | 0.383 |
158 | 158 | 0.816 |
159 | 159 | 0.293 |
16 | 16 | 0.0367 |
160 | 160 | 0.247 |
161 | 161 | 0.15 |
162 | 162 | 0.583 |
163 | 163 | 0.393 |
164 | 164 | 0.0925 |
165 | 165 | 0.207 |
166 | 166 | 0.995 |
167 | 167 | 0.635 |
168 | 168 | 0.0478 |
169 | 169 | 0.0109 |
17 | 17 | 0.0817 |
18 | 18 | 0.216 |
19 | 19 | 0.131 |
2 | 2 | 0.567 |
20 | 20 | 0.538 |
21 | 21 | 0.202 |
22 | 22 | 0.0937 |
23 | 23 | 0.155 |
24 | 24 | 0.0309 |
25 | 25 | 0.387 |
26 | 26 | 0.0276 |
27 | 27 | 0.38 |
28 | 28 | 0.696 |
29 | 29 | 0.0544 |
3 | 3 | 0.0489 |
30 | 30 | 0.677 |
31 | 31 | 0.715 |
32 | 32 | 0.052 |
33 | 33 | 0.116 |
34 | 34 | 0.488 |
35 | 35 | 0.545 |
36 | 36 | 0.164 |
37 | 37 | 0.0149 |
38 | 38 | 0.267 |
39 | 39 | 0.26 |
4 | 4 | 0.988 |
40 | 40 | 0.0403 |
41 | 41 | 0.246 |
42 | 42 | 0.213 |
43 | 43 | 0.116 |
44 | 44 | 0.198 |
45 | 45 | 0.533 |
46 | 46 | 0.221 |
47 | 47 | 0.0701 |
48 | 48 | 0.0838 |
49 | 49 | 0.197 |
5 | 5 | 0.274 |
50 | 50 | 0.322 |
51 | 51 | 0.388 |
52 | 52 | 0.344 |
53 | 53 | 0.948 |
54 | 54 | 0.308 |
55 | 55 | 0.749 |
56 | 56 | 0.386 |
57 | 57 | 0.574 |
58 | 58 | 0.259 |
59 | 59 | 0.0359 |
6 | 6 | 0.973 |
60 | 60 | 0.0416 |
61 | 61 | 0.0463 |
62 | 62 | 0.157 |
63 | 63 | 0.145 |
64 | 64 | 0.44 |
65 | 65 | 0.217 |
66 | 66 | 0.289 |
67 | 67 | 0.548 |
68 | 68 | 0.164 |
69 | 69 | 0.447 |
7 | 7 | 0.0435 |
70 | 70 | 0.0233 |
71 | 71 | 0.0185 |
72 | 72 | 0.146 |
73 | 73 | 0.0151 |
74 | 74 | 0.901 |
75 | 75 | 0.0413 |
76 | 76 | 0.584 |
77 | 77 | 0.124 |
78 | 78 | 0.00884 |
79 | 79 | 0.293 |
8 | 8 | 0.105 |
80 | 80 | 0.139 |
81 | 81 | 0.668 |
82 | 82 | 0.348 |
83 | 83 | 0.00247 |
84 | 84 | 0.838 |
85 | 85 | 0.0824 |
86 | 86 | 0.216 |
87 | 87 | 8.98971e-4 |
88 | 88 | 0.704 |
89 | 89 | 0.182 |
9 | 9 | 0.246 |
90 | 90 | 0.505 |
91 | 91 | 0.853 |
92 | 92 | 0.266 |
93 | 93 | 0.514 |
94 | 94 | 0.142 |
95 | 95 | 0.00576 |
96 | 96 | 0.385 |
97 | 97 | 0.796 |
98 | 98 | 0.263 |
99 | 99 | 0.563 |
library id: CNhs12996
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.25 |
10 | 10 | 0.181 |
100 | 100 | 0.556 |
101 | 101 | 0.769 |
102 | 102 | 0.359 |
103 | 103 | 0.7 |
104 | 104 | 0.624 |
105 | 105 | 0.119 |
106 | 106 | 0.521 |
107 | 107 | 0.0738 |
108 | 108 | 0.333 |
109 | 109 | 0.0774 |
11 | 11 | 0.576 |
110 | 110 | 0.298 |
111 | 111 | 0.43 |
112 | 112 | 0.0648 |
113 | 113 | 0.0118 |
114 | 114 | 0.837 |
115 | 115 | 0.111 |
116 | 116 | 0.368 |
117 | 117 | 0.00875 |
118 | 118 | 0.668 |
119 | 119 | 0.266 |
12 | 12 | 0.365 |
120 | 120 | 0.64 |
121 | 121 | 0.277 |
122 | 122 | 0.173 |
123 | 123 | 0.285 |
124 | 124 | 0.476 |
125 | 125 | 0.744 |
126 | 126 | 0.628 |
127 | 127 | 0.205 |
128 | 128 | 0.136 |
129 | 129 | 0.501 |
13 | 13 | 0.106 |
130 | 130 | 0.162 |
131 | 131 | 0.758 |
132 | 132 | 0.0133 |
133 | 133 | 0.49 |
134 | 134 | 0.974 |
135 | 135 | 0.0981 |
136 | 136 | 0.499 |
137 | 137 | 0.262 |
138 | 138 | 0.853 |
139 | 139 | 0.858 |
14 | 14 | 0.543 |
140 | 140 | 0.921 |
141 | 141 | 0.987 |
142 | 142 | 0.727 |
143 | 143 | 0.16 |
144 | 144 | 0.773 |
145 | 145 | 0.499 |
146 | 146 | 0.647 |
147 | 147 | 0.297 |
148 | 148 | 0.0911 |
149 | 149 | 0.153 |
15 | 15 | 0.191 |
150 | 150 | 0.429 |
151 | 151 | 0.489 |
152 | 152 | 0.636 |
153 | 153 | 0.847 |
154 | 154 | 0.656 |
155 | 155 | 0.539 |
156 | 156 | 0.67 |
157 | 157 | 0.574 |
158 | 158 | 0.836 |
159 | 159 | 0.126 |
16 | 16 | 0.791 |
160 | 160 | 0.62 |
161 | 161 | 0.688 |
162 | 162 | 0.635 |
163 | 163 | 0.388 |
164 | 164 | 0.561 |
165 | 165 | 0.517 |
166 | 166 | 0.264 |
167 | 167 | 0.579 |
168 | 168 | 0.568 |
169 | 169 | 0.801 |
17 | 17 | 0.957 |
18 | 18 | 0.0296 |
19 | 19 | 0.0251 |
2 | 2 | 0.00333 |
20 | 20 | 0.0105 |
21 | 21 | 0.469 |
22 | 22 | 0.716 |
23 | 23 | 0.197 |
24 | 24 | 0.539 |
25 | 25 | 0.592 |
26 | 26 | 0.726 |
27 | 27 | 0.087 |
28 | 28 | 0.573 |
29 | 29 | 0.0383 |
3 | 3 | 0.389 |
30 | 30 | 0.0791 |
31 | 31 | 0.489 |
32 | 32 | 3.21252e-6 |
33 | 33 | 0.362 |
34 | 34 | 0.535 |
35 | 35 | 0.999 |
36 | 36 | 0.0222 |
37 | 37 | 0.0818 |
38 | 38 | 0.715 |
39 | 39 | 0.689 |
4 | 4 | 0.477 |
40 | 40 | 0.0971 |
41 | 41 | 0.0118 |
42 | 42 | 0.259 |
43 | 43 | 0.914 |
44 | 44 | 0.313 |
45 | 45 | 0.684 |
46 | 46 | 0.902 |
47 | 47 | 0.563 |
48 | 48 | 0.633 |
49 | 49 | 0.615 |
5 | 5 | 0.736 |
50 | 50 | 0.982 |
51 | 51 | 0.644 |
52 | 52 | 0.235 |
53 | 53 | 0.854 |
54 | 54 | 0.762 |
55 | 55 | 0.822 |
56 | 56 | 0.784 |
57 | 57 | 0.234 |
58 | 58 | 0.85 |
59 | 59 | 0.158 |
6 | 6 | 0.872 |
60 | 60 | 0.384 |
61 | 61 | 0.246 |
62 | 62 | 0.909 |
63 | 63 | 0.711 |
64 | 64 | 0.915 |
65 | 65 | 0.654 |
66 | 66 | 0.00314 |
67 | 67 | 0.134 |
68 | 68 | 0.471 |
69 | 69 | 0.801 |
7 | 7 | 0.938 |
70 | 70 | 0.495 |
71 | 71 | 0.42 |
72 | 72 | 0.78 |
73 | 73 | 0.0187 |
74 | 74 | 0.21 |
75 | 75 | 0.0129 |
76 | 76 | 0.0166 |
77 | 77 | 0.252 |
78 | 78 | 0.582 |
79 | 79 | 0.166 |
8 | 8 | 0.862 |
80 | 80 | 0.284 |
81 | 81 | 0.501 |
82 | 82 | 0.501 |
83 | 83 | 0.979 |
84 | 84 | 0.742 |
85 | 85 | 0.109 |
86 | 86 | 0.177 |
87 | 87 | 0.00787 |
88 | 88 | 0.747 |
89 | 89 | 0.491 |
9 | 9 | 0.808 |
90 | 90 | 0.0592 |
91 | 91 | 0.0548 |
92 | 92 | 0.189 |
93 | 93 | 0.235 |
94 | 94 | 0.0266 |
95 | 95 | 0.00667 |
96 | 96 | 0.912 |
97 | 97 | 0.433 |
98 | 98 | 0.333 |
99 | 99 | 0.186 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11772
library id: CNhs12996
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0010063 human duodenum - fetal sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0002108 (small intestine)
0000160 (intestine)
0000479 (tissue)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0002114 (duodenum)
0005409 (gastrointestinal system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000999 (fetal tissue sample)
0000004 (tissue sample)
0010063 (human duodenum - fetal sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA