FF:10070-101I7: Difference between revisions

Latest revision as of 12:19, 3 June 2020

Name:	colon, fetal, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs11780
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	colon
dev stage	37 weeks fetus
sex	female
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Biochain
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	B207218
catalog number	Cat:RtHFN: Colon
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005845

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11780		CAGE		DRX008639		DRR009511

Accession ID Hg19

Library id		BAM		CTSS
CNhs11780		DRZ000936		DRZ002321

Accession ID Hg38

Library id		BAM		CTSS
CNhs11780		DRZ012286		DRZ013671

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.0686
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0.207
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.207
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.452
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.0378
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.162
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.316
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.207
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	1.258
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.207
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.0204
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0.888
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0.347
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0.104
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0775
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.207
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.207
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.111
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.195
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.381
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0.207
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.452
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.207
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.169
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.207
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.537
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.207
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0.495
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0.537
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.207
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.347
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11780

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0127
MA0003.1	MA0003.1	0.35
MA0004.1	MA0004.1	0.0856
MA0006.1	MA0006.1	0.221
MA0007.1	MA0007.1	0.451
MA0009.1	MA0009.1	0.879
MA0014.1	MA0014.1	0.547
MA0017.1	MA0017.1	1.5072e-5
MA0018.2	MA0018.2	0.342
MA0019.1	MA0019.1	0.844
MA0024.1	MA0024.1	0.362
MA0025.1	MA0025.1	0.484
MA0027.1	MA0027.1	0.954
MA0028.1	MA0028.1	6.85983e-8
MA0029.1	MA0029.1	0.46
MA0030.1	MA0030.1	0.00988
MA0031.1	MA0031.1	0.0133
MA0035.2	MA0035.2	0.581
MA0038.1	MA0038.1	0.391
MA0039.2	MA0039.2	0.252
MA0040.1	MA0040.1	0.786
MA0041.1	MA0041.1	0.468
MA0042.1	MA0042.1	0.664
MA0043.1	MA0043.1	0.0234
MA0046.1	MA0046.1	1.78773e-41
MA0047.2	MA0047.2	0.00948
MA0048.1	MA0048.1	0.0701
MA0050.1	MA0050.1	0.579
MA0051.1	MA0051.1	0.657
MA0052.1	MA0052.1	0.91
MA0055.1	MA0055.1	3.95214e-4
MA0057.1	MA0057.1	0.998
MA0058.1	MA0058.1	0.0366
MA0059.1	MA0059.1	0.00134
MA0060.1	MA0060.1	0.0256
MA0061.1	MA0061.1	3.59909e-4
MA0062.2	MA0062.2	2.14524e-11
MA0065.2	MA0065.2	0.849
MA0066.1	MA0066.1	0.0572
MA0067.1	MA0067.1	0.0808
MA0068.1	MA0068.1	0.00229
MA0069.1	MA0069.1	0.389
MA0070.1	MA0070.1	0.313
MA0071.1	MA0071.1	0.247
MA0072.1	MA0072.1	0.0488
MA0073.1	MA0073.1	0.443
MA0074.1	MA0074.1	0.831
MA0076.1	MA0076.1	1.8053e-9
MA0077.1	MA0077.1	0.634
MA0078.1	MA0078.1	0.161
MA0079.2	MA0079.2	0.316
MA0080.2	MA0080.2	0.16
MA0081.1	MA0081.1	0.0234
MA0083.1	MA0083.1	8.20716e-4
MA0084.1	MA0084.1	0.633
MA0087.1	MA0087.1	0.067
MA0088.1	MA0088.1	0.0153
MA0090.1	MA0090.1	0.765
MA0091.1	MA0091.1	0.811
MA0092.1	MA0092.1	0.787
MA0093.1	MA0093.1	0.0708
MA0099.2	MA0099.2	2.1391e-19
MA0100.1	MA0100.1	0.0639
MA0101.1	MA0101.1	8.72678e-4
MA0102.2	MA0102.2	0.851
MA0103.1	MA0103.1	0.0106
MA0104.2	MA0104.2	9.87157e-5
MA0105.1	MA0105.1	2.33739e-7
MA0106.1	MA0106.1	0.00218
MA0107.1	MA0107.1	0.0014
MA0108.2	MA0108.2	2.93257e-13
MA0111.1	MA0111.1	0.449
MA0112.2	MA0112.2	0.0711
MA0113.1	MA0113.1	0.67
MA0114.1	MA0114.1	0.00149
MA0115.1	MA0115.1	0.188
MA0116.1	MA0116.1	0.00318
MA0117.1	MA0117.1	0.138
MA0119.1	MA0119.1	0.621
MA0122.1	MA0122.1	0.772
MA0124.1	MA0124.1	0.972
MA0125.1	MA0125.1	0.496
MA0131.1	MA0131.1	0.225
MA0135.1	MA0135.1	0.388
MA0136.1	MA0136.1	6.60742e-4
MA0137.2	MA0137.2	0.987
MA0138.2	MA0138.2	0.536
MA0139.1	MA0139.1	0.158
MA0140.1	MA0140.1	0.728
MA0141.1	MA0141.1	0.505
MA0142.1	MA0142.1	0.232
MA0143.1	MA0143.1	0.505
MA0144.1	MA0144.1	0.731
MA0145.1	MA0145.1	0.478
MA0146.1	MA0146.1	0.453
MA0147.1	MA0147.1	2.76096e-5
MA0148.1	MA0148.1	0.00803
MA0149.1	MA0149.1	0.0316
MA0150.1	MA0150.1	1.7347e-7
MA0152.1	MA0152.1	0.534
MA0153.1	MA0153.1	2.81148e-20
MA0154.1	MA0154.1	0.0438
MA0155.1	MA0155.1	0.705
MA0156.1	MA0156.1	2.00953e-4
MA0157.1	MA0157.1	0.561
MA0159.1	MA0159.1	0.255
MA0160.1	MA0160.1	0.184
MA0162.1	MA0162.1	0.701
MA0163.1	MA0163.1	3.12226e-6
MA0164.1	MA0164.1	0.16
MA0258.1	MA0258.1	0.201
MA0259.1	MA0259.1	0.0926

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11780

Novel motif	Logo	P-value
1	1	0.0344
10	10	0.0573
100	100	0.198
101	101	0.897
102	102	0.252
103	103	0.156
104	104	0.818
105	105	0.318
106	106	0.597
107	107	0.0584
108	108	0.217
109	109	0.0318
11	11	0.24
110	110	0.0642
111	111	0.00993
112	112	0.935
113	113	0.0202
114	114	0.00823
115	115	0.396
116	116	0.932
117	117	0.0139
118	118	0.558
119	119	0.916
12	12	0.645
120	120	0.392
121	121	0.298
122	122	0.756
123	123	0.688
124	124	0.962
125	125	0.05
126	126	0.749
127	127	0.0791
128	128	0.042
129	129	0.94
13	13	0.0902
130	130	0.932
131	131	0.786
132	132	0.0421
133	133	0.264
134	134	0.342
135	135	0.563
136	136	0.265
137	137	0.291
138	138	0.88
139	139	0.16
14	14	0.924
140	140	0.612
141	141	0.126
142	142	0.506
143	143	0.0268
144	144	0.906
145	145	0.649
146	146	0.178
147	147	0.599
148	148	0.581
149	149	0.747
15	15	0.0467
150	150	0.748
151	151	0.864
152	152	0.445
153	153	0.723
154	154	0.658
155	155	0.708
156	156	0.832
157	157	0.944
158	158	0.203
159	159	0.93
16	16	0.337
160	160	0.675
161	161	0.363
162	162	0.143
163	163	0.55
164	164	0.229
165	165	0.923
166	166	0.104
167	167	0.0477
168	168	0.534
169	169	0.346
17	17	0.804
18	18	0.00235
19	19	0.539
2	2	0.0728
20	20	0.11
21	21	0.256
22	22	0.679
23	23	0.431
24	24	0.257
25	25	0.592
26	26	0.295
27	27	0.847
28	28	0.819
29	29	0.0146
3	3	0.443
30	30	0.0352
31	31	0.902
32	32	0.0135
33	33	0.112
34	34	0.26
35	35	0.115
36	36	0.0335
37	37	0.0665
38	38	0.835
39	39	0.341
4	4	0.436
40	40	0.237
41	41	0.208
42	42	0.232
43	43	0.366
44	44	0.943
45	45	0.425
46	46	0.156
47	47	0.167
48	48	0.303
49	49	0.229
5	5	0.626
50	50	0.374
51	51	0.916
52	52	0.0912
53	53	0.43
54	54	0.874
55	55	0.192
56	56	0.874
57	57	0.206
58	58	0.648
59	59	0.851
6	6	0.912
60	60	0.441
61	61	0.546
62	62	0.755
63	63	0.889
64	64	0.535
65	65	0.887
66	66	0.0161
67	67	0.12
68	68	0.765
69	69	0.954
7	7	0.399
70	70	0.133
71	71	0.0508
72	72	0.567
73	73	0.156
74	74	0.199
75	75	0.00283
76	76	0.192
77	77	0.485
78	78	0.646
79	79	0.667
8	8	0.246
80	80	0.832
81	81	0.765
82	82	0.43
83	83	0.246
84	84	0.723
85	85	0.264
86	86	0.178
87	87	0.0738
88	88	0.852
89	89	0.409
9	9	0.615
90	90	0.137
91	91	0.339
92	92	0.845
93	93	0.0657
94	94	0.0238
95	95	0.0109
96	96	0.836
97	97	0.552
98	98	0.121
99	99	0.132

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11780

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010070 human colon - fetal sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0001155 (colon)
0000160 (intestine)
0000479 (tissue)
0001007 (digestive system)
0000064 (organ part)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0000059 (large intestine)
0005409 (gastrointestinal system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000999 (fetal tissue sample)
0000004 (tissue sample)
0010070 (human colon - fetal sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
-|id=FF:10070-101I7
+|DRA_sample_Accession=CAGE@SAMD00005845
-|name=colon, fetal, donor1
+|accession_numbers=CAGE;DRX008639;DRR009511;DRZ000936;DRZ002321;DRZ012286;DRZ013671
-|sample_id=10070
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0001155,UBERON:0000160,UBERON:0000479,UBERON:0001007,UBERON:0000064,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0001555,UBERON:0000059,UBERON:0005409
-|rna_tube_id=101I7
-|rna_box=101
-|rna_position=I7
-|sample_cell_lot=NA
-|sample_cell_catalog=NA
-|sample_company=Biochain
-|rna_lot_number=B207218
-|rna_catalog_number=Cat:RtHFN: Colon
-|sample_species=Human (Homo sapiens)
-|sample_strain=
-|sample_dev_stage=37 weeks fetus
-|sample_tissue=colon
-|sample_donor(cell lot)=1
-|sample_sex=female
-|sample_age=
-|sample_ethnicity=A?
-|rna_rin=6.9
-|rna_od260/230=
-|rna_od260/280=
-|sample_cell_type=CELL MIXTURE - tissue sample
-|sample_cell_line=
-|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
-|sample_experimental_condition=
-|sample_disease=normal
-|rna_sample_type=total RNA
-|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
-|rna_weight_ug=50
-|rna_concentration=2
-|sample_note=
-|profile_hcage=CNhs11780,LSID820,release009,COMPLETED
-|profile_cagescan=,,,
-|profile_srnaseq=,,,
-|profile_rnaseq=,,,
 |ancestors_in_cell_lineage_facet=
-|ancestors_in_anatomy_facet=UBERON:0000059,UBERON:0000061,UBERON:0000062,UBERON:0000063,UBERON:0000064,UBERON:0000160,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0001007,UBERON:0001062,UBERON:0001155,UBERON:0001555,UBERON:0002050,UBERON:0002532,UBERON:0004119,UBERON:0004185,UBERON:0004921,UBERON:0005409,UBERON:0005423,UBERON:0007026
 |ancestors_in_disease_facet=
-|sample_description=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000999,FF:0000004,FF:0010070
+|comment=
+|created_by=
+|creation_date=
+|data_phase=2
+|datafreeze_phase=2
+|def=
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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000160;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001155;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005409
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 66: / Line 40: @@
 |fonse_treatment=
 |fonse_treatment_closure=
-|top_motifs=
+|has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/colon%252c%2520fetal%252c%2520donor1.CNhs11780.10070-101I7.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/colon%252c%2520fetal%252c%2520donor1.CNhs11780.10070-101I7.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/colon%252c%2520fetal%252c%2520donor1.CNhs11780.10070-101I7.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/colon%252c%2520fetal%252c%2520donor1.CNhs11780.10070-101I7.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/colon%252c%2520fetal%252c%2520donor1.CNhs11780.10070-101I7.hg38.nobarcode.ctss.bed.gz
+|id=FF:10070-101I7
+|is_a=EFO:0002091;;FF:0010070
+|is_obsolete=
+|library_id=CNhs11780
+|library_id_phase_based=2:CNhs11780
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10070
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10070
+|name=colon, fetal, donor1
+|namespace=FANTOM5
+|part_of=
+|profile_cagescan=,,,
+|profile_hcage=CNhs11780,LSID820,release009,COMPLETED
+|profile_rnaseq=
+|profile_srnaseq=,,,
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+|rna_box=101
+|rna_catalog_number=Cat:RtHFN: Colon
+|rna_concentration=2
+|rna_extraction_protocol=OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0
+|rna_lot_number=B207218
+|rna_od260/230=
+|rna_od260/280=
+|rna_position=I7
+|rna_rin=6.9
+|rna_sample_type=total RNA
+|rna_tube_id=101I7
+|rna_weight_ug=50
+|sample_age=
+|sample_category=tissues
+|sample_cell_catalog=NA
+|sample_cell_line=
+|sample_cell_lot=NA
+|sample_cell_type=CELL MIXTURE - tissue sample
+|sample_collaboration=FANTOM5 OSC CORE (contact: Al Forrest)
+|sample_company=Biochain
+|sample_description=
+|sample_dev_stage=37 weeks fetus
+|sample_disease=normal
+|sample_donor(cell lot)=1
+|sample_ethnicity=A?
+|sample_experimental_condition=
+|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.91359474933316e-252!GO:0005737;cytoplasm;3.15580109426694e-171!GO:0044444;cytoplasmic part;4.5775837267943e-111!GO:0043226;organelle;4.5775837267943e-111!GO:0043229;intracellular organelle;7.68971885089624e-111!GO:0043231;intracellular membrane-bound organelle;5.91944598030952e-105!GO:0043227;membrane-bound organelle;5.91944598030952e-105!GO:0005515;protein binding;1.88811389897166e-84!GO:0044422;organelle part;6.90876131873552e-74!GO:0044446;intracellular organelle part;8.28505340999449e-73!GO:0032991;macromolecular complex;2.36573444592814e-51!GO:0044237;cellular metabolic process;1.19988817029392e-45!GO:0044238;primary metabolic process;4.81664894093835e-45!GO:0005739;mitochondrion;1.90003258610413e-42!GO:0030529;ribonucleoprotein complex;4.23935218443793e-40!GO:0043170;macromolecule metabolic process;1.47300728544434e-39!GO:0031090;organelle membrane;4.83322738183066e-38!GO:0019538;protein metabolic process;7.1044166385067e-37!GO:0043233;organelle lumen;7.99998970158653e-36!GO:0031974;membrane-enclosed lumen;7.99998970158653e-36!GO:0016043;cellular component organization and biogenesis;3.45176120032335e-34!GO:0044260;cellular macromolecule metabolic process;1.55345879272169e-32!GO:0044429;mitochondrial part;3.33097247791435e-32!GO:0044267;cellular protein metabolic process;9.29114160762367e-32!GO:0033036;macromolecule localization;4.94287908391406e-31!GO:0003723;RNA binding;7.49116430685713e-31!GO:0008104;protein localization;2.18955473443998e-29!GO:0015031;protein transport;2.68038775446851e-29!GO:0031967;organelle envelope;2.78795712390301e-29!GO:0031975;envelope;4.59396130007131e-29!GO:0005829;cytosol;1.51610229443738e-28!GO:0044428;nuclear part;1.76308066068315e-28!GO:0045184;establishment of protein localization;1.81573833776892e-28!GO:0043234;protein complex;1.07469444332443e-27!GO:0005840;ribosome;1.11725021720897e-27!GO:0005634;nucleus;3.66273733290212e-25!GO:0003735;structural constituent of ribosome;5.49157588356893e-25!GO:0006412;translation;3.39436638706854e-24!GO:0009059;macromolecule biosynthetic process;4.90742487184486e-24!GO:0046907;intracellular transport;1.01554394355354e-23!GO:0033279;ribosomal subunit;1.01643482461996e-22!GO:0019866;organelle inner membrane;2.17225123422987e-22!GO:0065003;macromolecular complex assembly;2.26553937345386e-22!GO:0005740;mitochondrial envelope;8.33971517829347e-22!GO:0016071;mRNA metabolic process;1.2335419964424e-21!GO:0031966;mitochondrial membrane;1.43079569979833e-21!GO:0009058;biosynthetic process;4.59391348538209e-21!GO:0008380;RNA splicing;9.56546305620128e-21!GO:0022607;cellular component assembly;1.07783018713356e-20!GO:0005743;mitochondrial inner membrane;1.0823461413758e-20!GO:0006886;intracellular protein transport;5.68058999718735e-19!GO:0005783;endoplasmic reticulum;7.42494712806259e-18!GO:0005830;cytosolic ribosome (sensu Eukaryota);9.65881299730372e-18!GO:0006397;mRNA processing;1.65618631368911e-17!GO:0006119;oxidative phosphorylation;3.76013843539279e-17!GO:0008134;transcription factor binding;4.05229136091703e-17!GO:0031981;nuclear lumen;9.23848457266022e-17!GO:0006996;organelle organization and biogenesis;9.3491186112023e-17!GO:0044249;cellular biosynthetic process;1.70824256199647e-16!GO:0051641;cellular localization;3.36395115873012e-16!GO:0005794;Golgi apparatus;8.07019052153203e-16!GO:0048770;pigment granule;9.48930187351752e-16!GO:0042470;melanosome;9.48930187351752e-16!GO:0051649;establishment of cellular localization;9.81831328481677e-16!GO:0044445;cytosolic part;1.61164783651066e-15!GO:0006396;RNA processing;2.20062222319261e-15!GO:0043283;biopolymer metabolic process;5.01133828249951e-15!GO:0012505;endomembrane system;6.19320521557965e-15!GO:0043228;non-membrane-bound organelle;1.03845077860238e-14!GO:0043232;intracellular non-membrane-bound organelle;1.03845077860238e-14!GO:0044455;mitochondrial membrane part;1.37838503929878e-14!GO:0031980;mitochondrial lumen;1.76000010780513e-14!GO:0005759;mitochondrial matrix;1.76000010780513e-14!GO:0005681;spliceosome;7.31351000737295e-14!GO:0005746;mitochondrial respiratory chain;9.2623389177687e-14!GO:0016192;vesicle-mediated transport;4.30261722018809e-13!GO:0050136;NADH dehydrogenase (quinone) activity;7.42401373858144e-13!GO:0003954;NADH dehydrogenase activity;7.42401373858144e-13!GO:0008137;NADH dehydrogenase (ubiquinone) activity;7.42401373858144e-13!GO:0010467;gene expression;1.67422411423024e-12!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.8018230928458e-12!GO:0005654;nucleoplasm;2.66814369886475e-12!GO:0048523;negative regulation of cellular process;5.94405933806721e-12!GO:0015935;small ribosomal subunit;6.11342966701589e-12!GO:0015934;large ribosomal subunit;8.85502174864401e-12!GO:0012501;programmed cell death;1.99975061564134e-11!GO:0000166;nucleotide binding;2.34912540630454e-11!GO:0006915;apoptosis;2.71292203134126e-11!GO:0044265;cellular macromolecule catabolic process;3.46604152740328e-11!GO:0048193;Golgi vesicle transport;3.46711808317878e-11!GO:0006464;protein modification process;5.39304418811383e-11!GO:0043412;biopolymer modification;5.46373436954318e-11!GO:0031982;vesicle;6.2011652072959e-11!GO:0008219;cell death;8.77532501646551e-11!GO:0016265;death;8.77532501646551e-11!GO:0030964;NADH dehydrogenase complex (quinone);1.08313762738493e-10!GO:0045271;respiratory chain complex I;1.08313762738493e-10!GO:0005747;mitochondrial respiratory chain complex I;1.08313762738493e-10!GO:0003712;transcription cofactor activity;1.2106273030918e-10!GO:0031410;cytoplasmic vesicle;1.33522675548114e-10!GO:0042775;organelle ATP synthesis coupled electron transport;1.40379048637294e-10!GO:0042773;ATP synthesis coupled electron transport;1.40379048637294e-10!GO:0022618;protein-RNA complex assembly;1.72300706867167e-10!GO:0006793;phosphorus metabolic process;1.81589068008897e-10!GO:0006796;phosphate metabolic process;1.81589068008897e-10!GO:0044451;nucleoplasm part;2.25087847958877e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.70573567594042e-10!GO:0048519;negative regulation of biological process;2.7172556441263e-10!GO:0044432;endoplasmic reticulum part;5.0636654201778e-10!GO:0051603;proteolysis involved in cellular protein catabolic process;7.0994259315645e-10!GO:0006511;ubiquitin-dependent protein catabolic process;8.16225850868032e-10!GO:0030036;actin cytoskeleton organization and biogenesis;8.35105377010008e-10!GO:0019941;modification-dependent protein catabolic process;1.1648415912019e-09!GO:0043632;modification-dependent macromolecule catabolic process;1.1648415912019e-09!GO:0006457;protein folding;1.32468332497454e-09!GO:0031988;membrane-bound vesicle;1.32468332497454e-09!GO:0044257;cellular protein catabolic process;2.06854012652184e-09!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.26955724235925e-09!GO:0008092;cytoskeletal protein binding;2.46549441377921e-09!GO:0016023;cytoplasmic membrane-bound vesicle;2.65378648848081e-09!GO:0006605;protein targeting;3.3312187585238e-09!GO:0044248;cellular catabolic process;3.74353191987473e-09!GO:0009055;electron carrier activity;5.76664424255706e-09!GO:0043687;post-translational protein modification;7.58518019937323e-09!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);7.92479151118832e-09!GO:0006461;protein complex assembly;9.25862936766811e-09!GO:0016310;phosphorylation;9.68867971274212e-09!GO:0005793;ER-Golgi intermediate compartment;1.31673604357867e-08!GO:0009057;macromolecule catabolic process;2.02311186833394e-08!GO:0008135;translation factor activity, nucleic acid binding;2.58933636442446e-08!GO:0016564;transcription repressor activity;2.59863011387743e-08!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.86353536400234e-08!GO:0006512;ubiquitin cycle;3.16455478802348e-08!GO:0005773;vacuole;3.38502932104802e-08!GO:0005635;nuclear envelope;3.42519403046762e-08!GO:0005768;endosome;3.96268196245904e-08!GO:0016874;ligase activity;4.1412275000954e-08!GO:0006366;transcription from RNA polymerase II promoter;4.2242500422751e-08!GO:0043285;biopolymer catabolic process;4.25072827604996e-08!GO:0008565;protein transporter activity;4.47814924982846e-08!GO:0030029;actin filament-based process;5.3177974571253e-08!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;5.3177974571253e-08!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;6.08759626743057e-08!GO:0006913;nucleocytoplasmic transport;6.30042913687123e-08!GO:0051186;cofactor metabolic process;8.04407882543995e-08!GO:0050794;regulation of cellular process;8.46087893601764e-08!GO:0051169;nuclear transport;1.24814423044084e-07!GO:0005761;mitochondrial ribosome;1.27696242435969e-07!GO:0000313;organellar ribosome;1.27696242435969e-07!GO:0000502;proteasome complex (sensu Eukaryota);1.41693613190504e-07!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.49051304745756e-07!GO:0032553;ribonucleotide binding;1.51896478072953e-07!GO:0032555;purine ribonucleotide binding;1.51896478072953e-07!GO:0016462;pyrophosphatase activity;1.67283320866266e-07!GO:0017076;purine nucleotide binding;1.95430790881014e-07!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.96010742979343e-07!GO:0000398;nuclear mRNA splicing, via spliceosome;2.04409324841942e-07!GO:0000375;RNA splicing, via transesterification reactions;2.04409324841942e-07!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.04409324841942e-07!GO:0006446;regulation of translational initiation;2.10187901427262e-07!GO:0051082;unfolded protein binding;2.12075961503983e-07!GO:0016604;nuclear body;2.68332986551813e-07!GO:0016817;hydrolase activity, acting on acid anhydrides;2.71387578997982e-07!GO:0050789;regulation of biological process;3.21737371540909e-07!GO:0019829;cation-transporting ATPase activity;3.24306558468948e-07!GO:0030163;protein catabolic process;4.00446859856334e-07!GO:0045333;cellular respiration;4.30114867292082e-07!GO:0009060;aerobic respiration;5.35723346144344e-07!GO:0006732;coenzyme metabolic process;5.55077517409246e-07!GO:0000323;lytic vacuole;5.75462757057078e-07!GO:0005764;lysosome;5.75462757057078e-07!GO:0007010;cytoskeleton organization and biogenesis;6.87337190212096e-07!GO:0017111;nucleoside-triphosphatase activity;6.95771873300441e-07!GO:0007264;small GTPase mediated signal transduction;6.9978778883427e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;8.16916805498129e-07!GO:0042981;regulation of apoptosis;8.41782898980811e-07!GO:0043069;negative regulation of programmed cell death;9.04869746095299e-07!GO:0003743;translation initiation factor activity;9.15169878034305e-07!GO:0003779;actin binding;9.67162975106336e-07!GO:0009892;negative regulation of metabolic process;1.08619288097764e-06!GO:0043066;negative regulation of apoptosis;1.24048800865268e-06!GO:0005789;endoplasmic reticulum membrane;1.2942228376089e-06!GO:0043067;regulation of programmed cell death;1.30734494574772e-06!GO:0008639;small protein conjugating enzyme activity;1.31768579481846e-06!GO:0019899;enzyme binding;1.36510863638547e-06!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.51574943986126e-06!GO:0031252;leading edge;1.51686699106612e-06!GO:0031324;negative regulation of cellular metabolic process;1.54035146669791e-06!GO:0004842;ubiquitin-protein ligase activity;1.57546128239665e-06!GO:0006413;translational initiation;1.70471626624646e-06!GO:0031965;nuclear membrane;1.8630511066635e-06!GO:0006259;DNA metabolic process;3.71239628335007e-06!GO:0003714;transcription corepressor activity;3.73289093487407e-06!GO:0051246;regulation of protein metabolic process;4.2882588194896e-06!GO:0017038;protein import;4.96979497854143e-06!GO:0016481;negative regulation of transcription;5.26500296743497e-06!GO:0006099;tricarboxylic acid cycle;5.51152609368408e-06!GO:0046356;acetyl-CoA catabolic process;5.51152609368408e-06!GO:0015078;hydrogen ion transmembrane transporter activity;6.34115874874355e-06!GO:0015986;ATP synthesis coupled proton transport;6.60393672676679e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;6.60393672676679e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.7243630230832e-06!GO:0005770;late endosome;6.93484997213304e-06!GO:0006325;establishment and/or maintenance of chromatin architecture;7.55106745336613e-06!GO:0044431;Golgi apparatus part;7.59859252075759e-06!GO:0009056;catabolic process;7.82930259127719e-06!GO:0016607;nuclear speck;1.07594142596238e-05!GO:0019787;small conjugating protein ligase activity;1.25185999719218e-05!GO:0007049;cell cycle;1.4241253444771e-05!GO:0048471;perinuclear region of cytoplasm;1.96710820274253e-05!GO:0006084;acetyl-CoA metabolic process;2.13717829163401e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.38630659821918e-05!GO:0009109;coenzyme catabolic process;2.41174569640491e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.41174569640491e-05!GO:0006323;DNA packaging;2.7337376711197e-05!GO:0045259;proton-transporting ATP synthase complex;3.06166230499956e-05!GO:0006916;anti-apoptosis;3.11483806989113e-05!GO:0000785;chromatin;3.5257978486545e-05!GO:0007243;protein kinase cascade;4.13692330779094e-05!GO:0015980;energy derivation by oxidation of organic compounds;4.35842790929935e-05!GO:0003713;transcription coactivator activity;4.47318840752059e-05!GO:0006333;chromatin assembly or disassembly;4.51785059261624e-05!GO:0048522;positive regulation of cellular process;4.82486167924725e-05!GO:0030120;vesicle coat;5.20048304081153e-05!GO:0030662;coated vesicle membrane;5.20048304081153e-05!GO:0016469;proton-transporting two-sector ATPase complex;5.30799375405135e-05!GO:0051187;cofactor catabolic process;5.458085161057e-05!GO:0016563;transcription activator activity;5.68909125795215e-05!GO:0065007;biological regulation;6.35473386082853e-05!GO:0006888;ER to Golgi vesicle-mediated transport;6.77132908756937e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;7.61187431193415e-05!GO:0044255;cellular lipid metabolic process;8.47878048953176e-05!GO:0032559;adenyl ribonucleotide binding;8.66005969956981e-05!GO:0008154;actin polymerization and/or depolymerization;9.43110783544721e-05!GO:0005525;GTP binding;9.89477129577131e-05!GO:0005524;ATP binding;0.00010026362011619!GO:0003924;GTPase activity;0.000101432741625054!GO:0051170;nuclear import;0.00010277782331706!GO:0044440;endosomal part;0.00010632592177847!GO:0010008;endosome membrane;0.00010632592177847!GO:0048475;coated membrane;0.000106547814593176!GO:0030117;membrane coat;0.000106547814593176!GO:0045786;negative regulation of progression through cell cycle;0.00010736138859074!GO:0006606;protein import into nucleus;0.000112660782757238!GO:0005788;endoplasmic reticulum lumen;0.000113409163512758!GO:0030554;adenyl nucleotide binding;0.00011397811051109!GO:0016044;membrane organization and biogenesis;0.000121448166878637!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000133259427659196!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000134196225168961!GO:0030133;transport vesicle;0.000138538416716921!GO:0044453;nuclear membrane part;0.000142466189342!GO:0006754;ATP biosynthetic process;0.000158628388367191!GO:0006753;nucleoside phosphate metabolic process;0.000158628388367191!GO:0000139;Golgi membrane;0.000165885737904277!GO:0042802;identical protein binding;0.000169138799363358!GO:0051128;regulation of cellular component organization and biogenesis;0.000184595353913446!GO:0065004;protein-DNA complex assembly;0.000197764963347629!GO:0032446;protein modification by small protein conjugation;0.000226917953089779!GO:0048518;positive regulation of biological process;0.000235356654794654!GO:0032561;guanyl ribonucleotide binding;0.000258555034430197!GO:0019001;guanyl nucleotide binding;0.000258555034430197!GO:0005798;Golgi-associated vesicle;0.000292174648922262!GO:0030532;small nuclear ribonucleoprotein complex;0.00031426509094256!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000322811060360886!GO:0000245;spliceosome assembly;0.000322811060360886!GO:0043566;structure-specific DNA binding;0.000333613049473281!GO:0006091;generation of precursor metabolites and energy;0.000341650081720976!GO:0007265;Ras protein signal transduction;0.000353853770201432!GO:0016567;protein ubiquitination;0.000360682067435035!GO:0007242;intracellular signaling cascade;0.000361252467098744!GO:0006629;lipid metabolic process;0.000363841632766606!GO:0051726;regulation of cell cycle;0.000380419796058545!GO:0005839;proteasome core complex (sensu Eukaryota);0.00039914564036665!GO:0000074;regulation of progression through cell cycle;0.000407255032780069!GO:0051276;chromosome organization and biogenesis;0.00041936824357668!GO:0001666;response to hypoxia;0.000447882717541521!GO:0006334;nucleosome assembly;0.000479777838723916!GO:0005769;early endosome;0.000489951049266958!GO:0030867;rough endoplasmic reticulum membrane;0.000594038811754235!GO:0016881;acid-amino acid ligase activity;0.000604449119932499!GO:0016879;ligase activity, forming carbon-nitrogen bonds;0.000635272734403792!GO:0005083;small GTPase regulator activity;0.000757073869816673!GO:0001726;ruffle;0.000774459973920844!GO:0006613;cotranslational protein targeting to membrane;0.000774459973920844!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;0.000791241527485385!GO:0009145;purine nucleoside triphosphate biosynthetic process;0.000791241527485385!GO:0005730;nucleolus;0.000804584728150877!GO:0044262;cellular carbohydrate metabolic process;0.000839935925855184!GO:0005791;rough endoplasmic reticulum;0.000861419814612319!GO:0009966;regulation of signal transduction;0.000893772904495015!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000895208622877992!GO:0003676;nucleic acid binding;0.00092412863341164!GO:0000151;ubiquitin ligase complex;0.000952118480035525!GO:0051789;response to protein stimulus;0.00100562604097574!GO:0006986;response to unfolded protein;0.00100562604097574!GO:0006897;endocytosis;0.00106999665438215!GO:0010324;membrane invagination;0.00106999665438215!GO:0005643;nuclear pore;0.00110987349722967!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00111224108209077!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00111916088057242!GO:0004177;aminopeptidase activity;0.00111916088057242!GO:0042623;ATPase activity, coupled;0.00112503766624623!GO:0051188;cofactor biosynthetic process;0.00112917971731773!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00116474075239781!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00116474075239781!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00116474075239781!GO:0009142;nucleoside triphosphate biosynthetic process;0.00118250241114349!GO:0009201;ribonucleoside triphosphate biosynthetic process;0.00118250241114349!GO:0031497;chromatin assembly;0.0012414024643184!GO:0016740;transferase activity;0.00129766564677865!GO:0046034;ATP metabolic process;0.00134429076398305!GO:0016070;RNA metabolic process;0.00135472398910791!GO:0051427;hormone receptor binding;0.00139965213049658!GO:0045892;negative regulation of transcription, DNA-dependent;0.00140272381148187!GO:0051287;NAD binding;0.0014277346240177!GO:0006892;post-Golgi vesicle-mediated transport;0.00145177746446196!GO:0016853;isomerase activity;0.00151096522896274!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00162690397696242!GO:0015399;primary active transmembrane transporter activity;0.00162690397696242!GO:0008361;regulation of cell size;0.00162712874470692!GO:0005741;mitochondrial outer membrane;0.00168658120474713!GO:0019904;protein domain specific binding;0.00168718391356754!GO:0004298;threonine endopeptidase activity;0.00170149927837133!GO:0008654;phospholipid biosynthetic process;0.00175180029542429!GO:0033673;negative regulation of kinase activity;0.00179336319051603!GO:0006469;negative regulation of protein kinase activity;0.00179336319051603!GO:0030695;GTPase regulator activity;0.00179336319051603!GO:0022890;inorganic cation transmembrane transporter activity;0.00183572597682526!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00187919013489771!GO:0016049;cell growth;0.00188975421421435!GO:0007167;enzyme linked receptor protein signaling pathway;0.00192416203028495!GO:0019318;hexose metabolic process;0.00201479591850567!GO:0035257;nuclear hormone receptor binding;0.00202489810229494!GO:0016491;oxidoreductase activity;0.0020461969889369!GO:0043623;cellular protein complex assembly;0.00213111007396346!GO:0005885;Arp2/3 protein complex;0.00219996327526754!GO:0022402;cell cycle process;0.00220897260240363!GO:0015629;actin cytoskeleton;0.00229282368161707!GO:0005667;transcription factor complex;0.00230030039108226!GO:0016197;endosome transport;0.00236090122253656!GO:0008064;regulation of actin polymerization and/or depolymerization;0.00237297347366912!GO:0004576;oligosaccharyl transferase activity;0.00239705135667523!GO:0005762;mitochondrial large ribosomal subunit;0.0024136621046426!GO:0000315;organellar large ribosomal subunit;0.0024136621046426!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.00260236567919906!GO:0033043;regulation of organelle organization and biogenesis;0.00260236567919906!GO:0016887;ATPase activity;0.00260236567919906!GO:0003702;RNA polymerase II transcription factor activity;0.00261947083544663!GO:0019867;outer membrane;0.00269266034764671!GO:0003697;single-stranded DNA binding;0.00269594977115508!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00269594977115508!GO:0009152;purine ribonucleotide biosynthetic process;0.00303694414231039!GO:0008250;oligosaccharyl transferase complex;0.00303694414231039!GO:0030041;actin filament polymerization;0.00306469301309369!GO:0009205;purine ribonucleoside triphosphate metabolic process;0.00321896625426011!GO:0009144;purine nucleoside triphosphate metabolic process;0.00321896625426011!GO:0003690;double-stranded DNA binding;0.0034305860922287!GO:0030027;lamellipodium;0.00346649700407734!GO:0005996;monosaccharide metabolic process;0.00347341042636173!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00348184255791266!GO:0008286;insulin receptor signaling pathway;0.0035867326981248!GO:0050657;nucleic acid transport;0.0035867326981248!GO:0051236;establishment of RNA localization;0.0035867326981248!GO:0050658;RNA transport;0.0035867326981248!GO:0043492;ATPase activity, coupled to movement of substances;0.0035961252396895!GO:0031968;organelle outer membrane;0.00367949311649951!GO:0051920;peroxiredoxin activity;0.00367949311649951!GO:0045893;positive regulation of transcription, DNA-dependent;0.00379933158873179!GO:0003729;mRNA binding;0.00384799193660616!GO:0035258;steroid hormone receptor binding;0.00385079169357726!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00385079169357726!GO:0006950;response to stress;0.00389312285242055!GO:0046930;pore complex;0.00398750584185198!GO:0005905;coated pit;0.00398750584185198!GO:0005774;vacuolar membrane;0.00417034468970438!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00424164718215894!GO:0016568;chromatin modification;0.00428296343908679!GO:0009108;coenzyme biosynthetic process;0.00435268100826744!GO:0009199;ribonucleoside triphosphate metabolic process;0.00437948356329855!GO:0051348;negative regulation of transferase activity;0.00443169729694301!GO:0005912;adherens junction;0.00452582254453005!GO:0009150;purine ribonucleotide metabolic process;0.00479455118340565!GO:0007266;Rho protein signal transduction;0.00484118038912312!GO:0009141;nucleoside triphosphate metabolic process;0.00485928017388348!GO:0048468;cell development;0.0048829025666594!GO:0051252;regulation of RNA metabolic process;0.00496857644662014!GO:0006403;RNA localization;0.00496857644662014!GO:0030031;cell projection biogenesis;0.0052429371106402!GO:0007005;mitochondrion organization and biogenesis;0.00595056732622716!GO:0030832;regulation of actin filament length;0.00605061491254028!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00637297122280869!GO:0043488;regulation of mRNA stability;0.00637297122280869!GO:0043487;regulation of RNA stability;0.00637297122280869!GO:0006164;purine nucleotide biosynthetic process;0.0066404094336138!GO:0006650;glycerophospholipid metabolic process;0.00682581910670911!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00685832047105448!GO:0006066;alcohol metabolic process;0.00687284609799513!GO:0017166;vinculin binding;0.00715324155021515!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00716119143858308!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00757613678578429!GO:0032535;regulation of cellular component size;0.00775810386255878!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.00775810386255878!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.00777148028919844!GO:0007169;transmembrane receptor protein tyrosine kinase signaling pathway;0.00809783509237168!GO:0016584;nucleosome positioning;0.00823054672923287!GO:0045941;positive regulation of transcription;0.00864096966418481!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00866147553919058!GO:0051017;actin filament bundle formation;0.00870900641386985!GO:0065002;intracellular protein transport across a membrane;0.00896079120256751!GO:0060090;molecular adaptor activity;0.00904627044494379!GO:0006402;mRNA catabolic process;0.00912850385296873!GO:0001558;regulation of cell growth;0.00921161826601778!GO:0016859;cis-trans isomerase activity;0.00936184746047328!GO:0006163;purine nucleotide metabolic process;0.00943163084534334!GO:0019843;rRNA binding;0.00948069383389941!GO:0030865;cortical cytoskeleton organization and biogenesis;0.00960854396892199!GO:0005975;carbohydrate metabolic process;0.0100387085259716!GO:0046983;protein dimerization activity;0.0106095376414876!GO:0005694;chromosome;0.0108092013771501!GO:0043021;ribonucleoprotein binding;0.0108092013771501!GO:0006644;phospholipid metabolic process;0.0111222124566658!GO:0005765;lysosomal membrane;0.0111975593563196!GO:0009260;ribonucleotide biosynthetic process;0.0112249154586312!GO:0016301;kinase activity;0.011351247340173!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0114215255887169!GO:0006635;fatty acid beta-oxidation;0.0115389725676442!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0116157873756109!GO:0055083;monovalent inorganic anion homeostasis;0.0116157873756109!GO:0055064;chloride ion homeostasis;0.0116157873756109!GO:0030644;cellular chloride ion homeostasis;0.0116157873756109!GO:0006643;membrane lipid metabolic process;0.0116157873756109!GO:0044427;chromosomal part;0.0120366159031279!GO:0033116;ER-Golgi intermediate compartment membrane;0.0121555923700671!GO:0000314;organellar small ribosomal subunit;0.0122271272729253!GO:0005763;mitochondrial small ribosomal subunit;0.0122271272729253!GO:0030134;ER to Golgi transport vesicle;0.0122289910598844!GO:0022415;viral reproductive process;0.0127120400233968!GO:0008047;enzyme activator activity;0.0131122733225852!GO:0018106;peptidyl-histidine phosphorylation;0.0131122733225852!GO:0009259;ribonucleotide metabolic process;0.0131575508558083!GO:0004860;protein kinase inhibitor activity;0.0136814126133156!GO:0016787;hydrolase activity;0.0138423445635654!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0140027435613955!GO:0051087;chaperone binding;0.0142141069307112!GO:0044437;vacuolar part;0.0146026872157923!GO:0009719;response to endogenous stimulus;0.0146026872157923!GO:0009967;positive regulation of signal transduction;0.014634765334759!GO:0031901;early endosome membrane;0.014660612603672!GO:0006607;NLS-bearing substrate import into nucleus;0.014787688207349!GO:0008610;lipid biosynthetic process;0.0149115647861504!GO:0005938;cell cortex;0.0160485695627382!GO:0015630;microtubule cytoskeleton;0.0161084972432526!GO:0005048;signal sequence binding;0.0164029075831877!GO:0015992;proton transport;0.016686959171224!GO:0030132;clathrin coat of coated pit;0.0174983460761598!GO:0006891;intra-Golgi vesicle-mediated transport;0.0174983460761598!GO:0006612;protein targeting to membrane;0.017929572815303!GO:0006818;hydrogen transport;0.0181782462731579!GO:0016791;phosphoric monoester hydrolase activity;0.018184081465661!GO:0008022;protein C-terminus binding;0.0182709940414985!GO:0030127;COPII vesicle coat;0.0185271434368837!GO:0012507;ER to Golgi transport vesicle membrane;0.0185271434368837!GO:0030658;transport vesicle membrane;0.0186250251515475!GO:0043034;costamere;0.018628333206077!GO:0051028;mRNA transport;0.0187058785365188!GO:0051235;maintenance of localization;0.0187094555132851!GO:0016363;nuclear matrix;0.0188182279215996!GO:0017040;ceramidase activity;0.0188185020494775!GO:0018196;peptidyl-asparagine modification;0.0188185020494775!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0188185020494775!GO:0005070;SH3/SH2 adaptor activity;0.0190700304491807!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0193253479139025!GO:0030118;clathrin coat;0.0193273340274455!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0201220136225453!GO:0004197;cysteine-type endopeptidase activity;0.021385472360379!GO:0000118;histone deacetylase complex;0.0216766706039326!GO:0030100;regulation of endocytosis;0.0216766706039326!GO:0004674;protein serine/threonine kinase activity;0.0217126051983209!GO:0008139;nuclear localization sequence binding;0.0219355013146598!GO:0006974;response to DNA damage stimulus;0.0230919882784904!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.0232567823535046!GO:0030521;androgen receptor signaling pathway;0.023363342372957!GO:0031902;late endosome membrane;0.023363342372957!GO:0051168;nuclear export;0.0238526322248965!GO:0006414;translational elongation;0.025257313862472!GO:0051270;regulation of cell motility;0.0254229353752689!GO:0045454;cell redox homeostasis;0.0257115165183786!GO:0048487;beta-tubulin binding;0.0264250654976617!GO:0030518;steroid hormone receptor signaling pathway;0.0264250654976617!GO:0000786;nucleosome;0.0264721864622423!GO:0006752;group transfer coenzyme metabolic process;0.0267750771197378!GO:0015631;tubulin binding;0.0267750771197378!GO:0045045;secretory pathway;0.0267750771197378!GO:0051015;actin filament binding;0.0269239541448443!GO:0005813;centrosome;0.027002175768917!GO:0003724;RNA helicase activity;0.0276097357207493!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.02780106852726!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.02780106852726!GO:0004740;pyruvate dehydrogenase (acetyl-transferring) kinase activity;0.0280766352986165!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0280766352986165!GO:0006468;protein amino acid phosphorylation;0.0281724355271152!GO:0001516;prostaglandin biosynthetic process;0.0285808569990227!GO:0046457;prostanoid biosynthetic process;0.0285808569990227!GO:0009117;nucleotide metabolic process;0.0287383797534612!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0291049687555063!GO:0046870;cadmium ion binding;0.0293793420965881!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.0293793420965881!GO:0004812;aminoacyl-tRNA ligase activity;0.0293793420965881!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.0293793420965881!GO:0016311;dephosphorylation;0.0296789464334703!GO:0004300;enoyl-CoA hydratase activity;0.0296789464334703!GO:0006979;response to oxidative stress;0.0296789464334703!GO:0031625;ubiquitin protein ligase binding;0.0297982733777711!GO:0045098;type III intermediate filament;0.0301470362802508!GO:0031272;regulation of pseudopodium formation;0.0312459723895113!GO:0031269;pseudopodium formation;0.0312459723895113!GO:0031344;regulation of cell projection organization and biogenesis;0.0312459723895113!GO:0031268;pseudopodium organization and biogenesis;0.0312459723895113!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0312459723895113!GO:0031274;positive regulation of pseudopodium formation;0.0312459723895113!GO:0043681;protein import into mitochondrion;0.0313543730702174!GO:0006401;RNA catabolic process;0.0323397325318537!GO:0043284;biopolymer biosynthetic process;0.0330279768473201!GO:0046467;membrane lipid biosynthetic process;0.0330279768473201!GO:0051101;regulation of DNA binding;0.0339226108759172!GO:0005637;nuclear inner membrane;0.0344959643101004!GO:0008147;structural constituent of bone;0.034951454191577!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0354253208271423!GO:0016405;CoA-ligase activity;0.0354843610170278!GO:0050811;GABA receptor binding;0.0358999049429998!GO:0005586;collagen type III;0.0365194042628628!GO:0016860;intramolecular oxidoreductase activity;0.0365707275418054!GO:0030833;regulation of actin filament polymerization;0.0366899355867104!GO:0030135;coated vesicle;0.0367140386020791!GO:0007040;lysosome organization and biogenesis;0.0368224767639718!GO:0003746;translation elongation factor activity;0.0368541963553669!GO:0007050;cell cycle arrest;0.0372410648487102!GO:0008234;cysteine-type peptidase activity;0.037729811649762!GO:0050681;androgen receptor binding;0.0378512314900348!GO:0008287;protein serine/threonine phosphatase complex;0.0378512314900348!GO:0007015;actin filament organization;0.0378512314900348!GO:0030139;endocytic vesicle;0.0380013935022388!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0386219934967127!GO:0005096;GTPase activator activity;0.0386933600480134!GO:0008629;induction of apoptosis by intracellular signals;0.0389162146836666!GO:0051674;localization of cell;0.039283140070898!GO:0006928;cell motility;0.039283140070898!GO:0001725;stress fiber;0.0395809842803926!GO:0032432;actin filament bundle;0.0395809842803926!GO:0016327;apicolateral plasma membrane;0.0400654047169102!GO:0009100;glycoprotein metabolic process;0.0400654047169102!GO:0051540;metal cluster binding;0.0403811677682011!GO:0051536;iron-sulfur cluster binding;0.0403811677682011!GO:0031529;ruffle organization and biogenesis;0.0404334906602923!GO:0005100;Rho GTPase activator activity;0.0414864323000448!GO:0035035;histone acetyltransferase binding;0.0419747238391552!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0421622727746802!GO:0001889;liver development;0.0423751702780097!GO:0045121;lipid raft;0.0424416836317493!GO:0050178;phenylpyruvate tautomerase activity;0.0430300357605454!GO:0030660;Golgi-associated vesicle membrane;0.0431402205108536!GO:0019210;kinase inhibitor activity;0.0440901053358857!GO:0018202;peptidyl-histidine modification;0.0441541537490185!GO:0017091;AU-rich element binding;0.0441541537490185!GO:0050779;RNA destabilization;0.0441541537490185!GO:0000289;poly(A) tail shortening;0.0441541537490185!GO:0006006;glucose metabolic process;0.0443942291164455!GO:0043038;amino acid activation;0.0445125935948296!GO:0006418;tRNA aminoacylation for protein translation;0.0445125935948296!GO:0043039;tRNA aminoacylation;0.0445125935948296!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0452037146766609!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0455276824397493!GO:0015002;heme-copper terminal oxidase activity;0.0455276824397493!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0455276824397493!GO:0004129;cytochrome-c oxidase activity;0.0455276824397493!GO:0006082;organic acid metabolic process;0.0457263636767286!GO:0031072;heat shock protein binding;0.0461246395437028!GO:0030663;COPI coated vesicle membrane;0.0461246395437028!GO:0030126;COPI vesicle coat;0.0461246395437028!GO:0004680;casein kinase activity;0.0463333447400211!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0466413405966889!GO:0040012;regulation of locomotion;0.0469320564419063!GO:0005815;microtubule organizing center;0.0472916127225659!GO:0043621;protein self-association;0.0475523931309734!GO:0051049;regulation of transport;0.0475523931309734!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0476910243277905!GO:0043065;positive regulation of apoptosis;0.0478666210649669!GO:0040011;locomotion;0.0489073633651468!GO:0046474;glycerophospholipid biosynthetic process;0.0491896702868145
+|sample_id=10070
+|sample_note=
+|sample_sex=female
+|sample_species=Human (Homo sapiens)
+|sample_strain=
+|sample_tissue=colon
+|top_motifs=HNF4A_NR2F1,2:4.23213585725;HNF1A:3.66884520747;FOXD3:2.92721141115;DBP:2.84435762306;MTF1:2.81686810515;T:2.61933567985;FOXL1:2.58024244692;IKZF2:2.15092046023;SRF:2.14168067706;TBP:2.12472495717;MYBL2:2.08668101871;SPZ1:2.0599219404;XCPE1{core}:1.99725479595;SNAI1..3:1.96979491823;SP1:1.90238550067;PRDM1:1.89061090688;MAZ:1.87940120276;TFCP2:1.8553722361;NKX2-3_NKX2-5:1.81415899514;ZEB1:1.78904647683;FOXP1:1.78685258251;MTE{core}:1.74624593916;POU5F1:1.73557120817;FOX{D1,D2}:1.72386018613;HOX{A6,A7,B6,B7}:1.70894389693;FOXO1,3,4:1.66219272129;MZF1:1.5851454858;PATZ1:1.55926687621;BPTF:1.49623422813;NR6A1:1.48900555928;GATA6:1.47894814979;EP300:1.43587610272;NR1H4:1.40816470151;TFAP2{A,C}:1.40513847116;HIC1:1.31105079078;MED-1{core}:1.30463449407;TFAP2B:1.29705018936;POU6F1:1.28187940821;ZNF148:1.22778671672;GTF2I:1.2242285745;PAX6:1.21775999506;GATA4:1.21279719842;FOXM1:1.18084071155;FOX{F1,F2,J1}:1.13621634746;MYFfamily:1.13231817325;ATF6:1.08443081382;CDX1,2,4:0.980958589194;FOX{I1,J2}:0.977353080066;HMX1:0.951260868394;NR3C1:0.915552555352;TFAP4:0.875596755923;SOX5:0.871518726484;HMGA1,2:0.864941462929;EGR1..3:0.853071321553;RREB1:0.830396714929;ADNP_IRX_SIX_ZHX:0.76746501804;TLX1..3_NFIC{dimer}:0.754033857862;ZNF423:0.748703294938;KLF4:0.740733319254;PAX5:0.734497719607;GLI1..3:0.70711404082;ZNF384:0.682187218849;PITX1..3:0.681982415327;RBPJ:0.672149374115;TOPORS:0.664290227836;GCM1,2:0.653494589304;LMO2:0.635429670296;DMAP1_NCOR{1,2}_SMARC:0.619843979697;GFI1B:0.616204720529;FOXA2:0.581385353441;CDC5L:0.572563068833;NKX2-1,4:0.570737997596;REST:0.51365822469;BREu{core}:0.513378687311;NANOG:0.505067084883;ZFP161:0.503443049801;TBX4,5:0.479670834272;ESR1:0.477763227168;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.445436194414;TLX2:0.441731245489;AIRE:0.43723950399;GZF1:0.429957972387;STAT2,4,6:0.42871658779;ETS1,2:0.419707345702;NR5A1,2:0.404890749786;RXR{A,B,G}:0.398015363059;HBP1_HMGB_SSRP1_UBTF:0.38216244883;SMAD1..7,9:0.366898228539;FOXQ1:0.346184291509;NHLH1,2:0.303458841284;NKX6-1,2:0.296673129856;ZBTB16:0.29397817605;MYOD1:0.283713574434;ONECUT1,2:0.274304394335;LEF1_TCF7_TCF7L1,2:0.270652991381;IRF1,2:0.266366385871;PRRX1,2:0.264860811124;SREBF1,2:0.262662889797;FOXN1:0.250024411737;POU1F1:0.244389866355;TEAD1:0.238992918624;IRF7:0.236491033827;GFI1:0.222604034826;VSX1,2:0.208263903414;AR:0.177607199101;NANOG{mouse}:0.175305862636;OCT4_SOX2{dimer}:0.149752044949;GTF2A1,2:0.132352578058;TAL1_TCF{3,4,12}:0.129024875331;ATF2:0.124985083456;SPIB:0.11559387634;ATF4:0.0800809538856;MEF2{A,B,C,D}:0.0421905176269;EBF1:0.0397754858405;NKX2-2,8:0.038648093772;SPI1:0.0336800546134;ESRRA:0.0333479047093;NFATC1..3:-0.00630082737492;ARID5B:-0.00711431547617;ALX1:-0.00923576333128;CUX2:-0.022683158711;UFEwm:-0.0257256273908;STAT1,3:-0.0355782880885;ZBTB6:-0.0363911857766;HES1:-0.0657018756698;FOXP3:-0.0692220927696;SOX2:-0.0957178462632;MAFB:-0.102120632227;POU3F1..4:-0.102933697343;SOX17:-0.120676517407;RXRA_VDR{dimer}:-0.126436122184;POU2F1..3:-0.143264600463;IKZF1:-0.153465641654;CEBPA,B_DDIT3:-0.161090152309;SOX{8,9,10}:-0.182672154111;XBP1:-0.195369062919;RUNX1..3:-0.198735117386;HIF1A:-0.216720428499;ZIC1..3:-0.222411461719;TEF:-0.225369420059;bHLH_family:-0.242763111492;JUN:-0.251132671656;PAX2:-0.255735136584;ZNF238:-0.258133705221;LHX3,4:-0.291154964671;EVI1:-0.309668459;NFKB1_REL_RELA:-0.310313010291;PAX3,7:-0.351176652554;PBX1:-0.393671611483;TGIF1:-0.397953113667;ATF5_CREB3:-0.41646889202;HAND1,2:-0.425530577145;NFIL3:-0.464178212362;ZNF143:-0.478702295528;HLF:-0.479798578914;AHR_ARNT_ARNT2:-0.49893173281;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.50071967433;NFY{A,B,C}:-0.510441157692;FOSL2:-0.527330361871;NFIX:-0.561732019343;NFE2:-0.57686197585;ELF1,2,4:-0.581119500071;PPARG:-0.598214190793;NKX3-2:-0.604446657392;TFDP1:-0.611835991344;TP53:-0.615621654441;E2F1..5:-0.61594453459;CREB1:-0.625413055861;PDX1:-0.643677795292;RFX2..5_RFXANK_RFXAP:-0.676266140636;HOX{A4,D4}:-0.727175040251;FOS_FOS{B,L1}_JUN{B,D}:-0.759227175839;RFX1:-0.80487324359;NKX3-1:-0.844638067187;RORA:-0.844941402991;NRF1:-0.891548501044;CRX:-0.912743834992;NFE2L2:-0.973630430761;BACH2:-0.982125399229;HOX{A5,B5}:-1.07338808665;NFE2L1:-1.12924024331;PAX4:-1.19051072024;ALX4:-1.19693081161;HSF1,2:-1.2863252534;PAX1,9:-1.2864108292;MYB:-1.33801535546;STAT5{A,B}:-1.33862796405;EN1,2:-1.33943718228;HOXA9_MEIS1:-1.50050341398;YY1:-1.6560357995;ELK1,4_GABP{A,B1}:-1.67527325961;PAX8:-2.01552186177
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10070-101I7;search_select_hide=table117:FF:10070-101I7
 }}

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FF:10070-101I7: Difference between revisions

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Latest revision as of 12:19, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0