FF:10077-102A5: Difference between revisions

Latest revision as of 12:20, 3 June 2020

Name:	lymph node, adult, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs11788
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	lymph node
dev stage	30 years old adult
sex	male
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Ambion
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	8060051
catalog number	Cat:AM7894
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-ToTALLY-RNA-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005024

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11788		CAGE		DRX008681		DRR009553

Accession ID Hg19

Library id		BAM		CTSS
CNhs11788		DRZ000978		DRZ002363

Accession ID Hg38

Library id		BAM		CTSS
CNhs11788		DRZ012328		DRZ013713

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.122
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.197
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.11
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.299
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.299
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0341
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.175
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.134
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.363
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.258
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.696
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.00691
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	1.452
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.00948
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0897
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0.175
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.602
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.224
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.0875
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.213
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0877
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.475
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.303
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.175
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.542
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.277
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0.299
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.639
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0.299
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.175
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0.175
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11788

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	2.04732e-5
MA0003.1	MA0003.1	0.0856
MA0004.1	MA0004.1	0.871
MA0006.1	MA0006.1	0.274
MA0007.1	MA0007.1	0.112
MA0009.1	MA0009.1	0.486
MA0014.1	MA0014.1	0.299
MA0017.1	MA0017.1	0.00138
MA0018.2	MA0018.2	3.30068e-4
MA0019.1	MA0019.1	0.971
MA0024.1	MA0024.1	0.054
MA0025.1	MA0025.1	0.0782
MA0027.1	MA0027.1	0.722
MA0028.1	MA0028.1	0.104
MA0029.1	MA0029.1	0.419
MA0030.1	MA0030.1	0.711
MA0031.1	MA0031.1	0.213
MA0035.2	MA0035.2	0.519
MA0038.1	MA0038.1	0.0315
MA0039.2	MA0039.2	0.914
MA0040.1	MA0040.1	0.994
MA0041.1	MA0041.1	0.573
MA0042.1	MA0042.1	0.747
MA0043.1	MA0043.1	6.60967e-4
MA0046.1	MA0046.1	0.159
MA0047.2	MA0047.2	0.561
MA0048.1	MA0048.1	0.0539
MA0050.1	MA0050.1	1.02635e-9
MA0051.1	MA0051.1	2.78112e-4
MA0052.1	MA0052.1	0.526
MA0055.1	MA0055.1	0.00507
MA0057.1	MA0057.1	0.212
MA0058.1	MA0058.1	0.764
MA0059.1	MA0059.1	0.489
MA0060.1	MA0060.1	3.58096e-6
MA0061.1	MA0061.1	0.253
MA0062.2	MA0062.2	0.191
MA0065.2	MA0065.2	0.0222
MA0066.1	MA0066.1	0.435
MA0067.1	MA0067.1	0.235
MA0068.1	MA0068.1	0.298
MA0069.1	MA0069.1	0.802
MA0070.1	MA0070.1	0.973
MA0071.1	MA0071.1	0.739
MA0072.1	MA0072.1	0.0492
MA0073.1	MA0073.1	0.919
MA0074.1	MA0074.1	0.716
MA0076.1	MA0076.1	0.185
MA0077.1	MA0077.1	0.487
MA0078.1	MA0078.1	0.557
MA0079.2	MA0079.2	0.0493
MA0080.2	MA0080.2	6.34184e-17
MA0081.1	MA0081.1	0.0054
MA0083.1	MA0083.1	0.568
MA0084.1	MA0084.1	0.495
MA0087.1	MA0087.1	0.617
MA0088.1	MA0088.1	0.309
MA0090.1	MA0090.1	0.039
MA0091.1	MA0091.1	0.183
MA0092.1	MA0092.1	0.58
MA0093.1	MA0093.1	0.61
MA0099.2	MA0099.2	1.85498e-25
MA0100.1	MA0100.1	0.159
MA0101.1	MA0101.1	0.814
MA0102.2	MA0102.2	0.153
MA0103.1	MA0103.1	0.0361
MA0104.2	MA0104.2	0.0768
MA0105.1	MA0105.1	0.427
MA0106.1	MA0106.1	0.0125
MA0107.1	MA0107.1	0.963
MA0108.2	MA0108.2	0.156
MA0111.1	MA0111.1	0.262
MA0112.2	MA0112.2	0.0136
MA0113.1	MA0113.1	0.0271
MA0114.1	MA0114.1	0.156
MA0115.1	MA0115.1	0.61
MA0116.1	MA0116.1	0.002
MA0117.1	MA0117.1	0.0315
MA0119.1	MA0119.1	0.707
MA0122.1	MA0122.1	0.541
MA0124.1	MA0124.1	0.34
MA0125.1	MA0125.1	0.211
MA0131.1	MA0131.1	0.355
MA0135.1	MA0135.1	0.972
MA0136.1	MA0136.1	3.69753e-13
MA0137.2	MA0137.2	0.00215
MA0138.2	MA0138.2	0.12
MA0139.1	MA0139.1	0.748
MA0140.1	MA0140.1	0.893
MA0141.1	MA0141.1	0.63
MA0142.1	MA0142.1	0.838
MA0143.1	MA0143.1	0.965
MA0144.1	MA0144.1	0.00576
MA0145.1	MA0145.1	0.434
MA0146.1	MA0146.1	0.0458
MA0147.1	MA0147.1	0.121
MA0148.1	MA0148.1	0.504
MA0149.1	MA0149.1	0.884
MA0150.1	MA0150.1	0.00289
MA0152.1	MA0152.1	0.33
MA0153.1	MA0153.1	0.0347
MA0154.1	MA0154.1	0.0479
MA0155.1	MA0155.1	0.0731
MA0156.1	MA0156.1	2.98337e-11
MA0157.1	MA0157.1	0.104
MA0159.1	MA0159.1	0.657
MA0160.1	MA0160.1	0.456
MA0162.1	MA0162.1	0.595
MA0163.1	MA0163.1	0.0919
MA0164.1	MA0164.1	0.423
MA0258.1	MA0258.1	0.0599
MA0259.1	MA0259.1	0.0531

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11788

Novel motif	Logo	P-value
1	1	0.964
10	10	0.643
100	100	0.507
101	101	0.398
102	102	0.983
103	103	0.379
104	104	0.94
105	105	0.211
106	106	4.93633e-4
107	107	0.0038
108	108	0.602
109	109	0.578
11	11	0.193
110	110	0.779
111	111	0.317
112	112	0.057
113	113	0.00518
114	114	0.785
115	115	0.539
116	116	0.989
117	117	0.664
118	118	0.671
119	119	0.359
12	12	0.399
120	120	0.23
121	121	0.613
122	122	0.988
123	123	0.272
124	124	0.482
125	125	0.216
126	126	0.363
127	127	0.259
128	128	0.0636
129	129	0.159
13	13	0.296
130	130	0.403
131	131	0.285
132	132	0.107
133	133	0.0695
134	134	0.777
135	135	0.0379
136	136	0.309
137	137	0.292
138	138	0.27
139	139	0.139
14	14	0.313
140	140	0.889
141	141	0.345
142	142	0.328
143	143	0.11
144	144	0.564
145	145	0.0599
146	146	0.738
147	147	0.298
148	148	0.1
149	149	0.0338
15	15	0.666
150	150	0.278
151	151	0.564
152	152	0.0727
153	153	0.337
154	154	0.715
155	155	0.191
156	156	0.583
157	157	0.482
158	158	0.751
159	159	0.775
16	16	0.918
160	160	0.461
161	161	0.878
162	162	0.644
163	163	0.154
164	164	0.974
165	165	0.345
166	166	0.966
167	167	0.345
168	168	0.0118
169	169	0.0061
17	17	0.608
18	18	0.993
19	19	0.191
2	2	0.031
20	20	0.197
21	21	0.483
22	22	0.19
23	23	0.425
24	24	0.728
25	25	0.736
26	26	0.3
27	27	0.00175
28	28	0.633
29	29	0.851
3	3	0.128
30	30	0.644
31	31	0.407
32	32	0.868
33	33	0.302
34	34	0.0917
35	35	0.436
36	36	0.878
37	37	0.825
38	38	0.722
39	39	0.742
4	4	0.426
40	40	0.859
41	41	0.45
42	42	0.602
43	43	0.254
44	44	0.0235
45	45	0.208
46	46	0.314
47	47	0.944
48	48	0.313
49	49	0.236
5	5	0.958
50	50	0.304
51	51	0.613
52	52	0.313
53	53	0.0963
54	54	0.395
55	55	0.276
56	56	0.954
57	57	0.555
58	58	0.187
59	59	0.0921
6	6	0.438
60	60	0.0428
61	61	0.175
62	62	0.198
63	63	0.533
64	64	0.743
65	65	0.234
66	66	0.0282
67	67	0.499
68	68	0.404
69	69	0.564
7	7	0.745
70	70	0.732
71	71	0.499
72	72	0.0504
73	73	0.426
74	74	0.403
75	75	0.852
76	76	0.733
77	77	0.124
78	78	0.164
79	79	0.107
8	8	0.211
80	80	0.00524
81	81	0.442
82	82	0.0336
83	83	0.123
84	84	0.154
85	85	0.148
86	86	0.237
87	87	0.626
88	88	0.533
89	89	0.863
9	9	0.165
90	90	0.881
91	91	0.183
92	92	0.114
93	93	0.255
94	94	0.726
95	95	0.701
96	96	0.922
97	97	0.41
98	98	0.842
99	99	0.811

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11788

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010077 human lymph node - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000029 (lymph node)
0000479 (tissue)
0000064 (organ part)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002465 (lymphoid system)
0002193 (hemolymphoid system)
0002405 (immune system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010077 (human lymph node - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS008572
+|DRA_sample_Accession=CAGE@SAMD00005024
+|accession_numbers=CAGE;DRX008681;DRR009553;DRZ000978;DRZ002363;DRZ012328;DRZ013713
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000029,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002465,UBERON:0002193,UBERON:0002405
 |ancestors_in_cell_lineage_facet=
@@ Line 8: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr11:111249993..111250006,-!p1@POU2AF1!2.10!123.55!POU2AF1;;chr16:85932760..85932775,+!p1@IRF8!2.08!118.09!IRF8;;chr11:47400078..47400106,-!p1@SPI1!2.07!116.10!SPI1;;chr2:68592406..68592424,+!p1@PLEK!1.92!81.87!PLEK;;chr19:50922187..50922204,+!p1@SPIB!1.85!69.96!SPIB;;chr6:391743..391759,+!p1@IRF4!1.79!61.03!IRF4;;chr20:62680984..62680999,-!p1@SOX18!1.74!70.95!SOX18;;chr1:214161272..214161322,+!p1@PROX1!1.69!66.98!PROX1;;chr7:50343634..50343717,+!p2@IKZF1!1.68!46.64!IKZF1;;chr11:47400062..47400077,-!p2@SPI1!1.62!40.69!SPI1;;chr20:50159198..50159299,-!p1@NFATC2!1.61!57.06!NFATC2;;chr5:133451294..133451310,+!p2@TCF7!1.61!40.19!TCF7;;chr16:79634624..79634642,-!p1@MAF!1.56!132.97!MAF;;chr7:50344289..50344323,+!p1@IKZF1!1.55!34.73!IKZF1;;chr4:109087445..109087463,-!p1@LEF1!1.54!33.74!LEF1;;chr12:101869096..101869118,+!p1@SPIC!1.47!28.28!SPIC;;chr3:71355163..71355209,-!p5@FOXP1!1.45!37.21!FOXP1;;chr19:46801639..46801699,+!p1@HIF3A!1.45!27.29!HIF3A;;chr16:79634595..79634620,-!p2@MAF!1.44!47.63!MAF;;chr3:18486354..18486377,-!p2@SATB1!1.42!31.26!SATB1;;chr5:133450365..133450444,+!p1@TCF7!1.39!105.68!TCF7;;chr7:50344251..50344288,+!p3@IKZF1!1.39!23.82!IKZF1;;chr2:100759037..100759058,-!p2@AFF3!1.38!22.82!AFF3;;chr1:25256756..25256774,-!p1@RUNX3!1.37!41.18!RUNX3;;chr2:231090433..231090469,+!p1@SP140!1.37!22.33!SP140;;chr22:29196433..29196445,-!p4@XBP1!1.35!23.32!XBP1;;chr10:131762504..131762555,-!p1@EBF3!1.35!21.34!EBF3;;chrY:21906594..21906622,-!p1@KDM5D!1.35!21.34!KDM5D;;chr12:54778471..54778528,-!p1@ZNF385A!1.34!20.84!ZNF385A;;chr11:47399996..47400014,-!p4@SPI1!1.33!20.34!SPI1;;chr21:39870339..39870443,-!p1@ERG!1.33!20.34!ERG;;chr6:91006518..91006570,-!p1@BACH2!1.30!43.17!BACH2;;chr9:37034186..37034216,-!p2@PAX5!1.30!18.85!PAX5;;chr3:63953435..63953499,+!p1@ATXN7!1.28!17.86!ATXN7;;chr20:39317868..39317884,-!p1@MAFB!1.27!202.44!MAFB;;chr17:38020392..38020477,-!p1@IKZF3!1.26!17.37!IKZF3;;chr17:37934365..37934387,-!p2@IKZF3!1.25!16.87!IKZF3;;chr5:133451347..133451358,+!p3@TCF7!1.25!16.87!TCF7;;chrX:106960285..106960299,-!p1@TSC22D3!1.24!430.18!TSC22D3;;chr11:47279504..47279563,+!p1@NR1H3!1.24!36.72!NR1H3;;chr2:100759010..100759035,-!p1@AFF3!1.24!16.37!AFF3;;chr11:47399947..47399961,-!p3@SPI1!1.23!15.88!SPI1;;chr4:109090075..109090095,-!p2@LEF1!1.21!15.38!LEF1;;chr15:96873984..96873999,+!p3@NR2F2!1.20!106.68!NR2F2;;chr19:42636586..42636607,-!p1@POU2F2!1.20!41.18!POU2F2;;chr9:117150254..117150271,-!p1@AKNA!1.20!40.69!AKNA;;chr17:38020516..38020544,-!p5@IKZF3!1.20!14.88!IKZF3;;chr6:106546808..106546833,+!p3@PRDM1!1.17!17.37!PRDM1;;chr6:106546731..106546755,+!p5@PRDM1!1.17!13.89!PRDM1;;chrX:49121165..49121179,-!p1@FOXP3!1.16!13.40!FOXP3;;chr19:19779619..19779670,+!p1@ZNF101!1.14!36.22!ZNF101;;chr19:16435625..16435682,+!p1@KLF2!1.13!397.93!KLF2;;chr6:91006575..91006602,-!p2@BACH2!1.11!17.86!BACH2;;chr11:113930425..113930471,+!p1@ZBTB16!1.09!16.37!ZBTB16;;chr12:54694758..54694805,-!p1@NFE2!1.08!13.40!NFE2;;chr7:50343895..50343936,+!p5@IKZF1!1.08!10.92!IKZF1;;chr2:60781201..60781258,-!p3@BCL11A!1.08!10.92!BCL11A;;chr2:60780753..60780800,-!p1@BCL11A!1.06!52.10!BCL11A;;chr11:128392273..128392308,-!p2@ETS1!1.06!45.15!ETS1;;chr2:60780607..60780624,-!p2@BCL11A!1.06!32.25!BCL11A;;chr2:231090471..231090504,+!p2@SP140!1.06!10.42!SP140;;chr19:33793430..33793447,-!p1@CEBPA!1.05!43.17!CEBPA;;chr19:13213662..13213686,-!p1@LYL1!1.05!15.38!LYL1;;chr6:106534192..106534224,+!p1@PRDM1!1.04!28.78!PRDM1;;chr8:106330656..106330684,+!p1@ZFPM2!1.04!26.30!ZFPM2;;chr7:128577972..128578047,+!p1@IRF5!1.04!15.88!IRF5;;chr19:13213704..13213726,-!p3@LYL1!1.04!13.40!LYL1;;chr7:115670804..115670825,-!p1@TFEC!1.04!9.92!TFEC;;chr13:41240717..41240735,-!p2@FOXO1!1.03!66.49!FOXO1;;chr2:145277640..145277771,-!p1@ZEB2!1.02!127.51!ZEB2;;chr5:88178983..88179012,-!p1@MEF2C!1.02!74.42!MEF2C;;chr8:60031619..60031676,-!p1@TOX!1.02!20.84!TOX;;chr11:47400032..47400043,-!p5@SPI1!1.02!9.43!SPI1;;chr10:94449703..94449718,+!p1@HHEX!1.01!36.72!HHEX;;chr10:94449675..94449694,+!p2@HHEX!1.01!25.30!HHEX;;chr16:79634464..79634493,-!p5@MAF!1.00!8.93!MAF;;chr14:75988771..75988826,+!p1@BATF!0.99!11.91!BATF;;chr3:71179699..71179744,-!p2@FOXP1!0.98!65.00!FOXP1;;chr5:88179195..88179224,-!p3@MEF2C!0.98!13.89!MEF2C;;chr6:144385698..144385742,-!p2@PLAGL1!0.98!10.42!PLAGL1;;chr13:41593425..41593480,-!p1@ELF1!0.97!55.07!ELF1;;chr5:158526917..158526932,-!p1@EBF1!0.97!21.34!EBF1;;chr22:19748231..19748317,+!p1@TBX1!0.97!8.43!TBX1;;chr7:149470641..149470694,-!p1@ZNF467!0.96!38.20!ZNF467;;chrX:106960180..106960197,-!p2@TSC22D3!0.96!31.75!TSC22D3;;chrX:106960221..106960236,-!p3@TSC22D3!0.96!23.32!TSC22D3;;chrX:131623044..131623089,-!p1@MBNL3!0.95!34.24!MBNL3;;chr2:145277882..145277967,-!p3@ZEB2!0.95!13.89!ZEB2;;chr2:113057415..113057477,+!p3@ZC3H6!0.95!10.42!ZC3H6;;chr3:18487057..18487105,-!p4@SATB1!0.95!7.94!SATB1;;chr2:43453734..43453751,-!p1@ZFP36L2!0.93!822.64!ZFP36L2;;chr2:70142232..70142251,+!p1@MXD1!0.93!43.66!MXD1;;chr18:19749541..19749557,+!p1@GATA6!0.93!24.31!GATA6;;chr18:52989031..52989079,-!p2@TCF4!0.93!18.36!TCF4;;chr4:185395633..185395651,-!p2@IRF2!0.93!12.40!IRF2;;chrY:2803415..2803468,+!p1@ZFY!0.93!7.44!ZFY;;chr12:54694653..54694672,-!p2@NFE2!0.93!7.44!NFE2;;chr16:79633894..79633954,-!p3@MAF!0.92!14.39!MAF;;chr22:29196492..29196503,-!p3@XBP1!0.90!10.92!XBP1;;chr3:27763807..27763822,-!p1@EOMES!0.90!6.95!EOMES;;chr4:109089901..109089930,-!p3@LEF1!0.90!6.95!LEF1;;chr17:37934204..37934241,-!p3@IKZF3!0.90!6.95!IKZF3;;chr17:37934280..37934299,-!p6@IKZF3!0.90!6.95!IKZF3;;chr1:40105299..40105326,-!p1@HEYL!0.90!6.95!HEYL;;chr5:71803177..71803255,-!p1@ZNF366!0.90!6.95!ZNF366;;chr7:50348268..50348366,+!p4@IKZF1!0.90!6.95!IKZF1;;chr7:97840743..97840786,+!p1@BHLHA15!0.90!6.95!BHLHA15;;chr5:92918919..92918942,+!p1@NR2F1!0.89!31.75!NR2F1;;chr19:45260775..45260838,+!p5@BCL3!0.89!8.93!BCL3;;chr6:106534230..106534254,+!p2@PRDM1!0.88!17.37!PRDM1;;chr1:170632285..170632309,+!p1@PRRX1!0.88!7.44!PRRX1;;chr2:192015701..192015743,-!p1@STAT4!0.87!8.93!STAT4;;chr5:92919100..92919135,+!p3@NR2F1!0.87!7.94!NR2F1;;chr16:79634581..79634592,-!p4@MAF!0.87!6.45!MAF;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.87!6.45!SEBOX;;chr11:47400045..47400060,-!p6@SPI1!0.87!6.45!SPI1;;chr4:185395590..185395627,-!p3@IRF2!0.86!7.94!IRF2;;chr1:170633262..170633285,+!p3@PRRX1!0.85!6.95!PRRX1;;chr13:41240737..41240787,-!p1@FOXO1!0.84!74.92!FOXO1;;chr3:12330560..12330579,+!p1@PPARG!0.84!6.95!PPARG;;chr20:56195474..56195506,-!p1@ZBP1!0.84!5.95!ZBP1;;chr8:25902876..25902936,-!p1@EBF2!0.84!5.95!EBF2;;chr19:16435705..16435726,+!p3@KLF2!0.84!5.95!KLF2;;chr2:231084659..231084721,-!p1@SP110!0.83!145.87!SP110;;chr2:97202480..97202499,+!p1@ARID5A!0.83!63.01!ARID5A;;chr3:187463179..187463201,-!p2@BCL6!0.83!25.30!BCL6;;chrX:106960249..106960260,-!p5@TSC22D3!0.83!9.43!TSC22D3;;chr7:28725715..28725727,+!p3@CREB5!0.83!6.95!CREB5;;chr11:128563948..128564003,+!p1@FLI1!0.82!72.44!FLI1;;chr17:40440481..40440550,+!p1@STAT5A!0.82!43.17!STAT5A;;chr21:36421535..36421610,-!p2@RUNX1!0.82!21.34!RUNX1;;chr3:33482052..33482116,-!p2@UBP1!0.82!8.93!UBP1;;chr17:38020557..38020572,-!p4@IKZF3!0.81!5.46!IKZF3;;chr19:16435735..16435773,+!p4@KLF2!0.81!5.46!KLF2;;chr5:158526756..158526797,-!p3@EBF1!0.81!5.46!EBF1;;chr7:137620650..137620677,-!p3@CREB3L2!0.81!5.46!CREB3L2;;chr1:214161358..214161377,+!p3@PROX1!0.81!5.46!PROX1;;chr1:25291475..25291511,-!p2@RUNX3!0.81!5.46!RUNX3;;chr10:51572408..51572454,+!p3@NCOA4!0.80!33.74!NCOA4;;chr21:40177845..40177863,+!p1@ETS2!0.79!331.44!ETS2;;chr6:143266297..143266356,-!p1@HIVEP2!0.79!26.79!HIVEP2;;chr18:77160282..77160343,+!p2@NFATC1!0.78!34.24!NFATC1;;chr3:18466787..18466839,-!p1@SATB1!0.78!24.31!SATB1;;chr2:192015750..192015793,-!p2@STAT4!0.78!6.95!STAT4;;chr3:114173720..114173794,-!p6@ZBTB20!0.78!4.96!ZBTB20;;chr3:71542615..71542644,-!p12@FOXP1!0.78!4.96!FOXP1;;chr4:109088130..109088163,-!p13@LEF1!0.78!4.96!LEF1;;chr4:109088940..109089037,-!p4@LEF1!0.78!4.96!LEF1;;chr5:88120151..88120177,-!p6@MEF2C!0.78!4.96!MEF2C;;chr11:128457446..128457461,-!p4@ETS1!0.78!4.96!ETS1;;chr14:75988831..75988847,+!p2@BATF!0.78!4.96!BATF;;chr17:45810594..45810608,+!p1@TBX21!0.78!4.96!TBX21;;chr19:19281060..19281078,-!p2@MEF2BNB-MEF2B,p2@MEF2B!0.78!4.96!MEF2B;;chr2:231077626..231077651,-!p6@SP110!0.77!6.45!SP110;;chr7:21467674..21467727,+!p1@SP4!0.76!20.34!SP4;;chr19:58220517..58220583,-!p1@ZNF154!0.76!16.37!ZNF154;;chr5:88179230..88179270,-!p4@MEF2C!0.76!9.92!MEF2C;;chr5:172483347..172483407,+!p1@C5orf41!0.75!38.20!CREBRF;;chr5:142784101..142784130,-!p4@NR3C1!0.74!8.93!NR3C1;;chr4:185395191..185395226,-!p4@IRF2!0.74!6.45!IRF2;;chr9:117150303..117150312,-!p3@AKNA!0.74!5.95!AKNA;;chr5:92919068..92919082,+!p5@NR2F1!0.74!5.46!NR2F1;;chr19:50432132..50432217,+!p2@ATF5!0.74!5.46!ATF5;;chr1:214161328..214161348,+!p2@PROX1!0.74!4.47!PROX1;;chr1:92951607..92951661,-!p1@GFI1!0.74!4.47!GFI1;;chr6:134210243..134210257,+!p1@TCF21!0.74!4.47!TCF21;;chr6:41691289..41691312,-!p9@TFEB!0.74!4.47!TFEB;;chr8:10588010..10588030,-!p1@SOX7!0.74!4.47!SOX7;;chr8:55370487..55370503,+!p1@SOX17!0.74!4.47!SOX17;;chr2:214017168..214017189,-!p8@IKZF2!0.74!4.47!IKZF2;;chr3:71409904..71409927,-!p46@FOXP1!0.74!4.47!FOXP1;;chr3:71542684..71542720,-!p18@FOXP1!0.74!4.47!FOXP1;;chr19:13213954..13214021,-!p4@LYL1!0.74!4.47!LYL1;;chr8:48650715..48650735,-!p1@CEBPD!0.73!632.61!CEBPD;;chr15:96874012..96874042,+!p2@NR2F2!0.73!44.16!NR2F2;;chr18:53068911..53068935,-!p4@TCF4!0.73!4.96!TCF4;;chr19:57183114..57183145,-!p1@ZNF835!0.73!4.96!ZNF835;;chr1:158979686..158979745,+!p1@IFI16!0.72!158.28!IFI16;;chr8:123793860..123793921,+!p2@ZHX2!0.72!12.90!ZHX2;;chr6:157098579..157098634,+!p4@ARID1B!0.72!10.42!ARID1B;;chr22:29196547..29196563,-!p2@XBP1!0.71!170.68!XBP1;;chr3:71179746..71179783,-!p7@FOXP1!0.71!15.38!FOXP1;;chr19:56146352..56146420,+!p2@ZNF580,p2@ZNF581!0.70!29.77!ZNF580;;chr2:148778973..148779035,+!p3@MBD5!0.70!11.41!MBD5;;chr16:68119440..68119480,+!p4@NFATC3!0.70!6.95!NFATC3;;chr11:113930291..113930339,+!p2@ZBTB16!0.70!6.95!ZBTB16;;chr10:8096631..8096660,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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002465
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 38: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/lymph%2520node%252c%2520adult%252c%2520donor1.CNhs11788.10077-102A5.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/lymph%2520node%252c%2520adult%252c%2520donor1.CNhs11788.10077-102A5.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/lymph%2520node%252c%2520adult%252c%2520donor1.CNhs11788.10077-102A5.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/lymph%2520node%252c%2520adult%252c%2520donor1.CNhs11788.10077-102A5.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/lymph%2520node%252c%2520adult%252c%2520donor1.CNhs11788.10077-102A5.hg38.nobarcode.ctss.bed.gz
 |id=FF:10077-102A5
 |is_a=EFO:0002091;;FF:0010077
 |is_obsolete=
-|library_ids=CNhs11788
+|library_id=CNhs11788
+|library_id_phase_based=2:CNhs11788
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10077
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10077
 |name=lymph node, adult, donor1
 |namespace=FANTOM5
@@ Line 47: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11788,LSID820,release009,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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@@ Line 86: / Line 100: @@
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-}} {{DRAAccessionNumbers
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-|DRA_sample_Accession=CAGE@DRS008572
-|accession_numbers=DRX008681;DRR009553;DRZ000978;DRZ002363;CAGE
-|library_id=CNhs11788
 }}

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Latest revision as of 12:20, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0