FF:10082-102B1: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005055 | ||
|accession_numbers=CAGE;DRX008637;DRR009509;DRZ000934;DRZ002319;DRZ012284;DRZ013669 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0001155,UBERON:0000160,UBERON:0000479,UBERON:0001007,UBERON:0000064,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0001555,UBERON:0000059,UBERON:0005409 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010014 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/colon%252c%2520adult%252c%2520donor1.CNhs11794.10082-102B1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/colon%252c%2520adult%252c%2520donor1.CNhs11794.10082-102B1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/colon%252c%2520adult%252c%2520donor1.CNhs11794.10082-102B1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/colon%252c%2520adult%252c%2520donor1.CNhs11794.10082-102B1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/colon%252c%2520adult%252c%2520donor1.CNhs11794.10082-102B1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10082-102B1 | |id=FF:10082-102B1 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0010014 | ||
|is_obsolete= | |||
|library_id=CNhs11794 | |||
|library_id_phase_based=2:CNhs11794 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10082 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10082 | |||
|name=colon, adult, donor1 | |name=colon, adult, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11794,LSID820,release009,COMPLETED | |profile_hcage=CNhs11794,LSID820,release009,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.139681886354933,0,0.0174643166877244,-0.282403560576942,0,0.299999916441319,0,0,0,0,0,0,0,0,0,0,0,0.447190944498839,0,0,0,0,0,0.377789375840968,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0.132627328670943,0,0,0,0,0,0,0,0,0.213658614941679,0,0,0,0,0,0.121130690157684,0.299999916441319,0.203007555198714,0,0,0.378403644895929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.237873636054513,0,0,0,0,0.152655420991342,0.398176332785951,0,0,0.0604698974535007,0.188239942704705,-0.0611974444752095,0,0,0,0,0.377711920871319,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252286757480464,0,0,0,0.0371020782862361,0.0083198628007064,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0.299999916441319,0.377711920871319,0,0,0.475747272109026,0,0,0,0,0,0,0,0,0.228568396823461,0,-0.474086218752008,0.156484773917847,0,0,0.29482741263434,0,0.600513954847267,0,0,0,0,0,0.299999916441319,0,-0.128119866952565,0,0.249587364852004,0,0,0,0,0.146862254041279,0.391848471907443,0,0.063615574905003,0.407403011031657,0,0,0,0,0.0297592471069945,0,0.179120432647578,-0.0827201683234173,0.475709114703044,0.130171313169967,-0.055712496781182,0,0,0,0.135192237249682,1.02490008379603,0,0,0.178477125671759,0.444855122134951,0,0,0.90802617002792,0,-0.124938991774206,0.170830986975114,0,0,0,0,0,0,0,0.299999916441319,0,0,0,1.58046552086561,0,0.767371667056439,-0.0269886802376499,-0.0304099808375785,0,0,0,0.353365110188379,0,0.126466006894662,0.666231836843964,0.212444354655929,0,0.304312734686374,0.00106218299021333,-0.302389727009913,0.189595118559801,0.195697613495527,0.199217588467935,0.328345422737887,0.586451372293673,0,0.128018066002325,0.325767126113718,0.398591695618792,0.398176332785951,0.0736261961068366,0.257957266957643,0.288872346757425,0,0.69732070280585,0.324121931480568,0.011289304606091,0.0382046971847712,-0.0321476345948952,0.411171027357425,0.304293141820585,0.18178661664288,0.332474089068744,0.27436970701264,-0.277670208111477,0.736929231441914,0.143077501950672,0.131282998743733,0.216827573278195,0.125367056820124,0.998144094679655,0.150326824346943,0.0421051685704642,0.416274468460514,0.227504518032046,0,0.69018900214716,0.231655655363951,0.368906132714867,0.384384697423229,0.398256505441497,0.299999916441319,0.124392866123649,0.197655860972108,0,0,0,0.146939093550906,0.475747272109026,-0.0537884836684916,0.820262968120785,0.0671443548857742,0,0.0302605468636835,0.0729983879439042,-0.297286080352587,0,0.154199421281529,0.27357651049822,-0.298074152361292,0.156137851939691,0.00356579325475431,0.107306027694058,0.079771222895407,0.135009220102316,-0.122394888950419,-0.0584468268118252,0.267672160903924,0.368910245454309,0.188239942704705,0.0543908264204991,0.0646244899881344,1.81832110306428,0.18094599607784,-0.10711165867486,0.0178225711843262,0.246034979676104,0.303879107614718,0,0.141306193342701,0,-0.229195672648652,0.0219709015292039,0.0724434342830306,-0.0646864793642146,0.672750380647044,-0.122348449699587,0.0628205145720218,0.408735066226072,0.741346176780024,0.109438404879503,0.114997680437648,0.0209851216954734,0.843330691210726,0.14963283310668,0.953499882127155,0.388863526982677,0.161267520744439,0,-0.0136470665461362,0,0,0.15177725182067,-0.235476037764389,0,0.0572295479514825,0.167230177630124,0.172217050648226,0.785314668399264,0.299999916441319,0,0.255585403841473,0,0.299999916441319,1.03550899161943,0.299999916441319,0.582403251609203,0.0466735749545633,0.0725489407080485,0.730236607384604,0,0,-0.177527765965176,0.69732070280585,-0.090181081953201,0,0,-0.249881296598824,-0.100945722496853,0,0,0,0.0300626369851805,0,-0.0589565109853561,0,0.387873594275173,0.0132159791678252,0,0.0906156336710067,0.526210131879166,-0.354833330216448,0.475747272109026,-0.0343294602215083,0,0,0,0,0,0.220367572048475,0.299999916441319,0,-0.448117756173174,0.068346091059635,-0.12301741567642,0,0,0,0,0.0842765138878443,0.272510710014302,0,-0.131862706497632,0.299999916441319,0,0.299999916441319,0,-0.0861409897892114,0,0,0.14999995822066,0.14999995822066,0.242269459387655,0.125833536369608,0,0,0,-0.27695440160179,0,0,0,0,0.154502300661738,0,0,-0.156182901277354,0.0449779922060699,0.210232321683453,-0.0815818795468414,0,0.113696356319167,-0.398649879908316,0.050134770502489,0,0,0.214400140319138,0,0,-0.560197049524222,0.0447395757542672,0,0,0,0,0,0,0,0,0.386199442447511,0,0,0,0,0,0.299999916441319,0,0,0.299999916441319,0,0,0.283176385713328,0.60509664614734,0.129145248315039,0,0,0,0,0,0,0.27615095434473,0.145369768900831,0,0,0,0,0,0,0,0,-0.471425939663242,0,0,0,0,0,0.203007555198714,0,0,0,0,-0.564807121153884,0,0,-0.277362132193514,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,0.0174643166877244,0,0,0,0,0,0,0,0.978491446112037,0,0,0,0,-0.113884373708977,0,0,0,0.49571757005811,0,0.139681886354933,0,0,0,0,0,0,0,0,0,0,0,0,0,0.69732070280585,0,0,0,0.38821654592176,0,0,0,0.214712898302593,0.0279407277556684,0.299999916441319,0.190309130435607,0,0,0.155588193288719,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.066886822815763,0,0,0,0,0,0,0,0.377789375840968,0,0,0.0579671484201335,0,0,0,0,0,0,0.298557146800729,-0.0453467637686348,0.154813698529678,0,0,0.475747272109026,0.0956143857382045,0,0.00985433676391567,0.079590655665855,0.299999916441319,-0.0667773874189013,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.447190944498839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115988594945243,0.299999916441319,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,0.0869136867842753,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0703184051586309,0,0,0,0,0,0,0,0,0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| |||
|rna_box=102 | |rna_box=102 | ||
|rna_catalog_number=Cat: 636643 Lot: 8101369A-2 | |rna_catalog_number=Cat: 636643 Lot: 8101369A-2 | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age= | |sample_age= | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity=C | |sample_ethnicity=C | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;3.33576157342113e-242!GO:0005737;cytoplasm;8.2147740725918e-188!GO:0044444;cytoplasmic part;2.38313911886466e-132!GO:0043226;organelle;3.75168713283644e-125!GO:0043229;intracellular organelle;5.38659407455987e-125!GO:0043231;intracellular membrane-bound organelle;4.30217676981582e-120!GO:0043227;membrane-bound organelle;5.22341579430968e-120!GO:0044422;organelle part;1.57238062205557e-92!GO:0044446;intracellular organelle part;3.25842874569901e-91!GO:0005515;protein binding;4.10637471931747e-75!GO:0005739;mitochondrion;3.58355250364844e-64!GO:0032991;macromolecular complex;4.14821700727811e-58!GO:0031090;organelle membrane;1.376497880697e-51!GO:0044237;cellular metabolic process;2.76202533431938e-49!GO:0044238;primary metabolic process;5.35847151980216e-48!GO:0044429;mitochondrial part;7.75572557621999e-44!GO:0030529;ribonucleoprotein complex;6.73489262512807e-43!GO:0043233;organelle lumen;7.72532897021916e-42!GO:0031974;membrane-enclosed lumen;7.72532897021916e-42!GO:0019538;protein metabolic process;9.68660620057028e-41!GO:0043170;macromolecule metabolic process;1.7260180200181e-39!GO:0031967;organelle envelope;3.35933314713181e-39!GO:0031975;envelope;6.03632995981252e-39!GO:0016043;cellular component organization and biogenesis;1.22430471035389e-37!GO:0044260;cellular macromolecule metabolic process;1.64531157633034e-35!GO:0033036;macromolecule localization;1.16100773790328e-34!GO:0044267;cellular protein metabolic process;1.16288382484685e-34!GO:0015031;protein transport;3.77832661176966e-33!GO:0008104;protein localization;4.64597920210924e-33!GO:0003723;RNA binding;5.3545806880747e-33!GO:0043234;protein complex;1.64198762888066e-32!GO:0045184;establishment of protein localization;6.7319798456424e-32!GO:0005840;ribosome;1.13230864401622e-31!GO:0044428;nuclear part;1.761739029895e-31!GO:0019866;organelle inner membrane;7.39083500166898e-30!GO:0005740;mitochondrial envelope;7.61958933684338e-30!GO:0009058;biosynthetic process;2.97866922145438e-29!GO:0031966;mitochondrial membrane;3.06569142048293e-29!GO:0003735;structural constituent of ribosome;3.21626071120362e-28!GO:0005743;mitochondrial inner membrane;3.01660334170516e-27!GO:0046907;intracellular transport;5.01335729796794e-27!GO:0005829;cytosol;1.23294779725751e-26!GO:0006412;translation;2.08385435927889e-26!GO:0009059;macromolecule biosynthetic process;3.23130391505815e-26!GO:0033279;ribosomal subunit;4.36951138489253e-26!GO:0065003;macromolecular complex assembly;9.47762476703182e-26!GO:0005634;nucleus;2.58733087681886e-24!GO:0006886;intracellular protein transport;4.40509708117845e-24!GO:0022607;cellular component assembly;4.01390119579143e-23!GO:0044249;cellular biosynthetic process;1.39860167469376e-22!GO:0005783;endoplasmic reticulum;1.24657612436697e-21!GO:0012505;endomembrane system;2.17976203364988e-20!GO:0006996;organelle organization and biogenesis;3.12667781610719e-20!GO:0006119;oxidative phosphorylation;1.10486150734991e-19!GO:0016071;mRNA metabolic process;2.46581066513517e-19!GO:0031980;mitochondrial lumen;6.94769386977729e-19!GO:0005759;mitochondrial matrix;6.94769386977729e-19!GO:0051641;cellular localization;8.65932532658044e-19!GO:0051649;establishment of cellular localization;1.67513403051863e-18!GO:0044455;mitochondrial membrane part;2.12777414474244e-18!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.35720111576954e-18!GO:0043228;non-membrane-bound organelle;2.35720111576954e-18!GO:0043232;intracellular non-membrane-bound organelle;2.35720111576954e-18!GO:0031981;nuclear lumen;2.95088018095604e-18!GO:0005794;Golgi apparatus;7.37779440383491e-18!GO:0048770;pigment granule;8.39788278556649e-18!GO:0042470;melanosome;8.39788278556649e-18!GO:0006396;RNA processing;1.68160128596779e-17!GO:0005746;mitochondrial respiratory chain;2.09243203165396e-17!GO:0008380;RNA splicing;8.87397015724527e-17!GO:0043283;biopolymer metabolic process;1.22617828049465e-16!GO:0000166;nucleotide binding;7.6620664727435e-16!GO:0044432;endoplasmic reticulum part;8.14647194136143e-16!GO:0050136;NADH dehydrogenase (quinone) activity;1.45452059258061e-15!GO:0003954;NADH dehydrogenase activity;1.45452059258061e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.45452059258061e-15!GO:0006397;mRNA processing;1.75786994150575e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;3.10051383628522e-15!GO:0043412;biopolymer modification;5.36002602154434e-15!GO:0008134;transcription factor binding;8.11935484630587e-15!GO:0006464;protein modification process;2.3463823154176e-14!GO:0044445;cytosolic part;2.72906644689187e-14!GO:0015935;small ribosomal subunit;5.99928890658564e-14!GO:0016192;vesicle-mediated transport;2.94887313060236e-13!GO:0015934;large ribosomal subunit;3.33175535287107e-13!GO:0030964;NADH dehydrogenase complex (quinone);3.53163355195385e-13!GO:0045271;respiratory chain complex I;3.53163355195385e-13!GO:0005747;mitochondrial respiratory chain complex I;3.53163355195385e-13!GO:0042775;organelle ATP synthesis coupled electron transport;7.04281478387017e-13!GO:0042773;ATP synthesis coupled electron transport;7.04281478387017e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.15311944063041e-12!GO:0016874;ligase activity;1.55917476208056e-12!GO:0051186;cofactor metabolic process;1.99477627280267e-12!GO:0006793;phosphorus metabolic process;5.80703155988944e-12!GO:0006796;phosphate metabolic process;5.80703155988944e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;6.82790875052043e-12!GO:0043687;post-translational protein modification;1.09134599515382e-11!GO:0005654;nucleoplasm;1.14429302160292e-11!GO:0009055;electron carrier activity;1.23493708101621e-11!GO:0017076;purine nucleotide binding;1.25285194804638e-11!GO:0032553;ribonucleotide binding;1.57550646787412e-11!GO:0032555;purine ribonucleotide binding;1.57550646787412e-11!GO:0044265;cellular macromolecule catabolic process;1.86646318082058e-11!GO:0048193;Golgi vesicle transport;2.02914721493308e-11!GO:0006461;protein complex assembly;2.25208386648612e-11!GO:0005681;spliceosome;2.63118163371584e-11!GO:0006605;protein targeting;4.69479947323684e-11!GO:0006732;coenzyme metabolic process;4.85459517488997e-11!GO:0042175;nuclear envelope-endoplasmic reticulum network;5.39536038321682e-11!GO:0005789;endoplasmic reticulum membrane;6.25917889204283e-11!GO:0022613;ribonucleoprotein complex biogenesis and assembly;7.63618947463092e-11!GO:0051603;proteolysis involved in cellular protein catabolic process;9.92977651576501e-11!GO:0006511;ubiquitin-dependent protein catabolic process;1.13861803416231e-10!GO:0044248;cellular catabolic process;1.53558236937796e-10!GO:0019941;modification-dependent protein catabolic process;1.62843354817838e-10!GO:0043632;modification-dependent macromolecule catabolic process;1.62843354817838e-10!GO:0016310;phosphorylation;1.76215640514058e-10!GO:0044257;cellular protein catabolic process;2.69340060567762e-10!GO:0044451;nucleoplasm part;3.18251339020977e-10!GO:0010467;gene expression;3.68873025743221e-10!GO:0005761;mitochondrial ribosome;4.37135622322546e-10!GO:0000313;organellar ribosome;4.37135622322546e-10!GO:0022618;protein-RNA complex assembly;5.42504891391373e-10!GO:0031982;vesicle;7.23169293453877e-10!GO:0008565;protein transporter activity;8.78482021634417e-10!GO:0048523;negative regulation of cellular process;9.09340046994782e-10!GO:0031410;cytoplasmic vesicle;1.0950786862518e-09!GO:0005524;ATP binding;1.26816273865508e-09!GO:0030554;adenyl nucleotide binding;1.30212430577684e-09!GO:0032559;adenyl ribonucleotide binding;1.30212430577684e-09!GO:0000502;proteasome complex (sensu Eukaryota);1.35523682494046e-09!GO:0006457;protein folding;1.48171711837526e-09!GO:0005635;nuclear envelope;1.62143646812803e-09!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.77074713268589e-09!GO:0030036;actin cytoskeleton organization and biogenesis;1.86030501836461e-09!GO:0031988;membrane-bound vesicle;1.99412617195971e-09!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.09667320642457e-09!GO:0006259;DNA metabolic process;2.6894872457435e-09!GO:0012501;programmed cell death;2.73289281007934e-09!GO:0016023;cytoplasmic membrane-bound vesicle;2.73289281007934e-09!GO:0009060;aerobic respiration;2.73289281007934e-09!GO:0006512;ubiquitin cycle;2.89847533232584e-09!GO:0006915;apoptosis;3.38495762195228e-09!GO:0008092;cytoskeletal protein binding;3.76615936913768e-09!GO:0045333;cellular respiration;3.98122106315868e-09!GO:0031965;nuclear membrane;5.62239953374715e-09!GO:0043285;biopolymer catabolic process;8.32870042866621e-09!GO:0016462;pyrophosphatase activity;8.94594005721667e-09!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.30925150492606e-08!GO:0005793;ER-Golgi intermediate compartment;1.49356527363778e-08!GO:0006913;nucleocytoplasmic transport;1.52810586038624e-08!GO:0016817;hydrolase activity, acting on acid anhydrides;1.6299759628608e-08!GO:0008219;cell death;1.7763596356977e-08!GO:0016265;death;1.7763596356977e-08!GO:0008135;translation factor activity, nucleic acid binding;1.79968048030493e-08!GO:0009057;macromolecule catabolic process;2.02972182512334e-08!GO:0003712;transcription cofactor activity;2.43603557099529e-08!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;3.24370458180833e-08!GO:0030163;protein catabolic process;3.99744526394737e-08!GO:0051169;nuclear transport;3.99832649494818e-08!GO:0048519;negative regulation of biological process;4.19754902955096e-08!GO:0051082;unfolded protein binding;4.53097037965626e-08!GO:0006099;tricarboxylic acid cycle;4.62910329213109e-08!GO:0046356;acetyl-CoA catabolic process;4.62910329213109e-08!GO:0005768;endosome;5.1896500721689e-08!GO:0019829;cation-transporting ATPase activity;5.31281885429977e-08!GO:0005773;vacuole;6.13139510614408e-08!GO:0016740;transferase activity;6.3554809813863e-08!GO:0017111;nucleoside-triphosphatase activity;7.33441289695433e-08!GO:0030029;actin filament-based process;8.47543539515665e-08!GO:0006084;acetyl-CoA metabolic process;1.04072986713305e-07!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.08052040548757e-07!GO:0006091;generation of precursor metabolites and energy;1.46587152061455e-07!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.80962348283273e-07!GO:0015980;energy derivation by oxidation of organic compounds;1.80962348283273e-07!GO:0016491;oxidoreductase activity;2.24274071688847e-07!GO:0006446;regulation of translational initiation;2.52108583165117e-07!GO:0007049;cell cycle;3.27877302139343e-07!GO:0044431;Golgi apparatus part;3.60118038303509e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.63682858999192e-07!GO:0000323;lytic vacuole;4.20225623830804e-07!GO:0005764;lysosome;4.20225623830804e-07!GO:0009109;coenzyme catabolic process;4.60924372388396e-07!GO:0003743;translation initiation factor activity;5.33266408986415e-07!GO:0006366;transcription from RNA polymerase II promoter;5.8909110680703e-07!GO:0015078;hydrogen ion transmembrane transporter activity;6.71328927077904e-07!GO:0044453;nuclear membrane part;6.84575058695003e-07!GO:0007264;small GTPase mediated signal transduction;6.882395223959e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;9.10307200877881e-07!GO:0005788;endoplasmic reticulum lumen;9.16600504094133e-07!GO:0000398;nuclear mRNA splicing, via spliceosome;9.69150504919414e-07!GO:0000375;RNA splicing, via transesterification reactions;9.69150504919414e-07!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;9.69150504919414e-07!GO:0008639;small protein conjugating enzyme activity;1.15630661994711e-06!GO:0017038;protein import;1.16287535981912e-06!GO:0045259;proton-transporting ATP synthase complex;1.32140518718239e-06!GO:0048475;coated membrane;1.4017816560137e-06!GO:0030117;membrane coat;1.4017816560137e-06!GO:0051187;cofactor catabolic process;1.5339503020148e-06!GO:0004842;ubiquitin-protein ligase activity;1.5339503020148e-06!GO:0006413;translational initiation;1.56085187409571e-06!GO:0016604;nuclear body;1.70971364282716e-06!GO:0009056;catabolic process;2.09996364643003e-06!GO:0015986;ATP synthesis coupled proton transport;2.9848042732522e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.9848042732522e-06!GO:0030120;vesicle coat;2.98541076815036e-06!GO:0030662;coated vesicle membrane;2.98541076815036e-06!GO:0003779;actin binding;3.21067811822081e-06!GO:0006323;DNA packaging;3.50367448226816e-06!GO:0019787;small conjugating protein ligase activity;3.50534973976014e-06!GO:0007010;cytoskeleton organization and biogenesis;4.21801965619613e-06!GO:0031252;leading edge;5.70206983683851e-06!GO:0051188;cofactor biosynthetic process;7.33093237669825e-06!GO:0016564;transcription repressor activity;8.45481488601404e-06!GO:0044255;cellular lipid metabolic process;9.36034579670186e-06!GO:0007265;Ras protein signal transduction;9.69150233756814e-06!GO:0000785;chromatin;9.98580275345308e-06!GO:0005730;nucleolus;1.29568142236956e-05!GO:0000139;Golgi membrane;1.50566617504021e-05!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.60762859952291e-05!GO:0051246;regulation of protein metabolic process;1.68718809192069e-05!GO:0005770;late endosome;1.7101907069079e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.72714246552524e-05!GO:0019899;enzyme binding;1.95605631635275e-05!GO:0031324;negative regulation of cellular metabolic process;2.01288310338821e-05!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;2.22001554941569e-05!GO:0042981;regulation of apoptosis;2.24155333303882e-05!GO:0005643;nuclear pore;2.3866592453643e-05!GO:0005839;proteasome core complex (sensu Eukaryota);2.63501449330631e-05!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.91076091752204e-05!GO:0042623;ATPase activity, coupled;2.95438735092647e-05!GO:0009892;negative regulation of metabolic process;2.95438735092647e-05!GO:0016469;proton-transporting two-sector ATPase complex;3.33867706716194e-05!GO:0016607;nuclear speck;3.44464057074221e-05!GO:0043067;regulation of programmed cell death;3.50678676654682e-05!GO:0005083;small GTPase regulator activity;4.15724770190684e-05!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;4.42674208982941e-05!GO:0051427;hormone receptor binding;4.43001528554912e-05!GO:0048471;perinuclear region of cytoplasm;4.43316510450386e-05!GO:0065004;protein-DNA complex assembly;4.44035518899402e-05!GO:0044262;cellular carbohydrate metabolic process;4.55566527731913e-05!GO:0044440;endosomal part;4.62432387583884e-05!GO:0010008;endosome membrane;4.62432387583884e-05!GO:0030133;transport vesicle;5.07258627846883e-05!GO:0005798;Golgi-associated vesicle;5.08281779581645e-05!GO:0016301;kinase activity;5.26118589389427e-05!GO:0006333;chromatin assembly or disassembly;5.55465737903545e-05!GO:0016881;acid-amino acid ligase activity;5.65444129438979e-05!GO:0051170;nuclear import;5.94715281429851e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;6.47982917921023e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;6.47982917921023e-05!GO:0009142;nucleoside triphosphate biosynthetic process;6.50326562772741e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;6.50326562772741e-05!GO:0006606;protein import into nucleus;6.55395122534902e-05!GO:0006754;ATP biosynthetic process;6.64627177981849e-05!GO:0006753;nucleoside phosphate metabolic process;6.64627177981849e-05!GO:0006888;ER to Golgi vesicle-mediated transport;6.85648070871221e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;7.22152082248588e-05!GO:0050794;regulation of cellular process;7.32156324727359e-05!GO:0065002;intracellular protein transport across a membrane;7.67234752074668e-05!GO:0006163;purine nucleotide metabolic process;7.67234752074668e-05!GO:0035257;nuclear hormone receptor binding;7.84745592218506e-05!GO:0008610;lipid biosynthetic process;7.84745592218506e-05!GO:0009108;coenzyme biosynthetic process;7.8956324440113e-05!GO:0009150;purine ribonucleotide metabolic process;8.10955343269619e-05!GO:0043069;negative regulation of programmed cell death;8.22226430156206e-05!GO:0006629;lipid metabolic process;9.60457450273387e-05!GO:0007243;protein kinase cascade;0.000101453899912368!GO:0016887;ATPase activity;0.000102136990189807!GO:0051276;chromosome organization and biogenesis;0.000102136990189807!GO:0043066;negative regulation of apoptosis;0.000104168441371859!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.000106577057547633!GO:0004812;aminoacyl-tRNA ligase activity;0.000106577057547633!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.000106577057547633!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000106577057547633!GO:0006164;purine nucleotide biosynthetic process;0.000110554675819085!GO:0009199;ribonucleoside triphosphate metabolic process;0.00011107696442334!GO:0009205;purine ribonucleoside triphosphate metabolic process;0.000112210307361965!GO:0009144;purine nucleoside triphosphate metabolic process;0.000112210307361965!GO:0009152;purine ribonucleotide biosynthetic process;0.000112286410120381!GO:0007242;intracellular signaling cascade;0.000112662309541723!GO:0009141;nucleoside triphosphate metabolic process;0.00011430553813249!GO:0016481;negative regulation of transcription;0.000128241528973386!GO:0045786;negative regulation of progression through cell cycle;0.000128241528973386!GO:0005791;rough endoplasmic reticulum;0.000137410225219311!GO:0022402;cell cycle process;0.0001382895474542!GO:0006334;nucleosome assembly;0.0001382895474542!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000143096207566165!GO:0051726;regulation of cell cycle;0.000146228247846143!GO:0042802;identical protein binding;0.000152624283820973!GO:0005762;mitochondrial large ribosomal subunit;0.000155173479000834!GO:0000315;organellar large ribosomal subunit;0.000155173479000834!GO:0009259;ribonucleotide metabolic process;0.000155486676827852!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000155827603081782!GO:0000074;regulation of progression through cell cycle;0.000156981687246994!GO:0046034;ATP metabolic process;0.000159638224173082!GO:0006082;organic acid metabolic process;0.000165066759005707!GO:0007005;mitochondrion organization and biogenesis;0.000171133541352179!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000174076084765384!GO:0015399;primary active transmembrane transporter activity;0.000174076084765384!GO:0003714;transcription corepressor activity;0.000191278650066117!GO:0004298;threonine endopeptidase activity;0.000203626449490532!GO:0043623;cellular protein complex assembly;0.000225230155095871!GO:0019752;carboxylic acid metabolic process;0.000228623223344288!GO:0008154;actin polymerization and/or depolymerization;0.000235774768435497!GO:0035258;steroid hormone receptor binding;0.00024229789296858!GO:0043038;amino acid activation;0.00024229789296858!GO:0006418;tRNA aminoacylation for protein translation;0.00024229789296858!GO:0043039;tRNA aminoacylation;0.00024229789296858!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.000245614241839448!GO:0030867;rough endoplasmic reticulum membrane;0.000250100283402814!GO:0030695;GTPase regulator activity;0.000269093401434248!GO:0009117;nucleotide metabolic process;0.00027712475012182!GO:0030532;small nuclear ribonucleoprotein complex;0.000287342229380777!GO:0046930;pore complex;0.00029021422255476!GO:0031497;chromatin assembly;0.000301547340237027!GO:0006916;anti-apoptosis;0.000305221706756271!GO:0016044;membrane organization and biogenesis;0.000324054569353908!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000333013979552584!GO:0048522;positive regulation of cellular process;0.000361674025709871!GO:0004674;protein serine/threonine kinase activity;0.000399759486203101!GO:0016787;hydrolase activity;0.000402596173180288!GO:0009260;ribonucleotide biosynthetic process;0.000403598308190712!GO:0050789;regulation of biological process;0.000430088848464264!GO:0044427;chromosomal part;0.00045311669005815!GO:0005694;chromosome;0.00045311669005815!GO:0009966;regulation of signal transduction;0.000512409389529275!GO:0016853;isomerase activity;0.000527545841923043!GO:0051287;NAD binding;0.00057310515455574!GO:0022890;inorganic cation transmembrane transporter activity;0.000625939345258237!GO:0016568;chromatin modification;0.000627512271362818!GO:0051128;regulation of cellular component organization and biogenesis;0.000645856650671984!GO:0050657;nucleic acid transport;0.000691575690778518!GO:0051236;establishment of RNA localization;0.000691575690778518!GO:0050658;RNA transport;0.000691575690778518!GO:0003713;transcription coactivator activity;0.000702151394364484!GO:0008654;phospholipid biosynthetic process;0.000702151394364484!GO:0005741;mitochondrial outer membrane;0.000722951201054006!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000800126311476881!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000820349171206983!GO:0043492;ATPase activity, coupled to movement of substances;0.000860808738036605!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000866527950365709!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000866527950365709!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000866527950365709!GO:0019867;outer membrane;0.000975319991646307!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000982693180676202!GO:0031968;organelle outer membrane;0.000993342885942088!GO:0006403;RNA localization;0.00102835957222668!GO:0005525;GTP binding;0.00105053226448698!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00116503370589111!GO:0045454;cell redox homeostasis;0.00116650847501228!GO:0005769;early endosome;0.00116815761998996!GO:0005885;Arp2/3 protein complex;0.00117944701530019!GO:0006613;cotranslational protein targeting to membrane;0.00119204995487557!GO:0051789;response to protein stimulus;0.00124986257959633!GO:0006986;response to unfolded protein;0.00124986257959633!GO:0003924;GTPase activity;0.001277333588397!GO:0016567;protein ubiquitination;0.00134484325410398!GO:0032446;protein modification by small protein conjugation;0.00135767293545496!GO:0048518;positive regulation of biological process;0.0014132394004319!GO:0043566;structure-specific DNA binding;0.00145729933298219!GO:0016563;transcription activator activity;0.00150696707937719!GO:0005667;transcription factor complex;0.00151597425445558!GO:0030118;clathrin coat;0.00152348615332952!GO:0000314;organellar small ribosomal subunit;0.00159169233721985!GO:0005763;mitochondrial small ribosomal subunit;0.00159169233721985!GO:0007266;Rho protein signal transduction;0.00162962840750342!GO:0006974;response to DNA damage stimulus;0.00163330470870696!GO:0050662;coenzyme binding;0.00164292088962221!GO:0000245;spliceosome assembly;0.00167996679276444!GO:0051920;peroxiredoxin activity;0.00169895091271707!GO:0045893;positive regulation of transcription, DNA-dependent;0.00176800491337979!GO:0006752;group transfer coenzyme metabolic process;0.00181621755152817!GO:0006635;fatty acid beta-oxidation;0.00182799122332658!GO:0046578;regulation of Ras protein signal transduction;0.0018646867686571!GO:0033116;ER-Golgi intermediate compartment membrane;0.00192497409828732!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00203471045170319!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00219766019554562!GO:0006650;glycerophospholipid metabolic process;0.00221209533044669!GO:0019318;hexose metabolic process;0.00230507584047618!GO:0008250;oligosaccharyl transferase complex;0.00242216783678522!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00259443600281433!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00259443600281433!GO:0051252;regulation of RNA metabolic process;0.00259443600281433!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00259443600281433!GO:0004576;oligosaccharyl transferase activity;0.00279689228030336!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.0028411384238355!GO:0006892;post-Golgi vesicle-mediated transport;0.00287778446280058!GO:0005996;monosaccharide metabolic process;0.00289991257397959!GO:0008047;enzyme activator activity;0.0029149496828053!GO:0030031;cell projection biogenesis;0.00300230963016039!GO:0030176;integral to endoplasmic reticulum membrane;0.00308863463641272!GO:0003697;single-stranded DNA binding;0.00308901553158135!GO:0005905;coated pit;0.00312593752377605!GO:0019843;rRNA binding;0.00321679810575254!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00321679810575254!GO:0030041;actin filament polymerization;0.00321679810575254!GO:0006468;protein amino acid phosphorylation;0.00322593623429681!GO:0006631;fatty acid metabolic process;0.00331116655454626!GO:0005975;carbohydrate metabolic process;0.00334040477873625!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.00370632943332352!GO:0033043;regulation of organelle organization and biogenesis;0.00370632943332352!GO:0001726;ruffle;0.0037600026609143!GO:0004672;protein kinase activity;0.0037600026609143!GO:0008064;regulation of actin polymerization and/or depolymerization;0.00378401848008255!GO:0000151;ubiquitin ligase complex;0.00383102520172799!GO:0016197;endosome transport;0.00396413788552642!GO:0051056;regulation of small GTPase mediated signal transduction;0.00401351779655564!GO:0032787;monocarboxylic acid metabolic process;0.00412711234326219!GO:0051028;mRNA transport;0.00424888272575473!GO:0006897;endocytosis;0.0045088053685459!GO:0010324;membrane invagination;0.0045088053685459!GO:0030132;clathrin coat of coated pit;0.00452848410047983!GO:0009719;response to endogenous stimulus;0.00453270247708589!GO:0030518;steroid hormone receptor signaling pathway;0.00457878948227249!GO:0032561;guanyl ribonucleotide binding;0.00466366369022432!GO:0019001;guanyl nucleotide binding;0.00466366369022432!GO:0017166;vinculin binding;0.0048137486329409!GO:0030658;transport vesicle membrane;0.0048335358632221!GO:0030119;AP-type membrane coat adaptor complex;0.00491647515463557!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00503889043016174!GO:0006399;tRNA metabolic process;0.00519339174005895!GO:0006979;response to oxidative stress;0.00519339174005895!GO:0005637;nuclear inner membrane;0.00520011306752873!GO:0043488;regulation of mRNA stability;0.0053645123118945!GO:0043487;regulation of RNA stability;0.0053645123118945!GO:0005048;signal sequence binding;0.00548314079244889!GO:0045892;negative regulation of transcription, DNA-dependent;0.00555837424680317!GO:0051168;nuclear export;0.00618261863019704!GO:0030131;clathrin adaptor complex;0.00628997654300599!GO:0006818;hydrogen transport;0.00634507414675352!GO:0045941;positive regulation of transcription;0.00636353058839239!GO:0006118;electron transport;0.006380133453515!GO:0045045;secretory pathway;0.00642527343857858!GO:0006066;alcohol metabolic process;0.0064288192202033!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0066867429557281!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0067545750836926!GO:0009100;glycoprotein metabolic process;0.00700674814462956!GO:0015992;proton transport;0.00707578743554256!GO:0006260;DNA replication;0.00813718134840118!GO:0030027;lamellipodium;0.00822370941216681!GO:0016791;phosphoric monoester hydrolase activity;0.00858093896233975!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00878293054399502!GO:0006643;membrane lipid metabolic process;0.00881811896955494!GO:0015629;actin cytoskeleton;0.00881811896955494!GO:0000278;mitotic cell cycle;0.00892631524550632!GO:0005912;adherens junction;0.008999637102936!GO:0006644;phospholipid metabolic process;0.00915425522208028!GO:0016049;cell growth;0.00948293253637145!GO:0008361;regulation of cell size;0.00971575361268321!GO:0000786;nucleosome;0.00974705913798857!GO:0030521;androgen receptor signaling pathway;0.0098756151616917!GO:0004386;helicase activity;0.0100743125814802!GO:0008139;nuclear localization sequence binding;0.0101030097696663!GO:0006891;intra-Golgi vesicle-mediated transport;0.0101030097696663!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0101159101078374!GO:0031902;late endosome membrane;0.0101276176967938!GO:0030134;ER to Golgi transport vesicle;0.0101646052857072!GO:0030832;regulation of actin filament length;0.0110584422551052!GO:0005774;vacuolar membrane;0.0110626342003522!GO:0051017;actin filament bundle formation;0.0112424241217791!GO:0030384;phosphoinositide metabolic process;0.0116164443107373!GO:0045098;type III intermediate filament;0.0121279374717841!GO:0030660;Golgi-associated vesicle membrane;0.0126313215662687!GO:0001666;response to hypoxia;0.012991047699702!GO:0003724;RNA helicase activity;0.012991047699702!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0131246767290728!GO:0015002;heme-copper terminal oxidase activity;0.0131246767290728!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0131246767290728!GO:0004129;cytochrome-c oxidase activity;0.0131246767290728!GO:0006595;polyamine metabolic process;0.0132683840452742!GO:0004177;aminopeptidase activity;0.0135470178766962!GO:0018196;peptidyl-asparagine modification;0.0135470178766962!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0135470178766962!GO:0048037;cofactor binding;0.0138933948348449!GO:0003676;nucleic acid binding;0.0140213174974345!GO:0005099;Ras GTPase activator activity;0.0142821944343102!GO:0019904;protein domain specific binding;0.0144192279026962!GO:0046474;glycerophospholipid biosynthetic process;0.0144672217817981!GO:0030663;COPI coated vesicle membrane;0.0144785639502496!GO:0030126;COPI vesicle coat;0.0144785639502496!GO:0005813;centrosome;0.014595718704431!GO:0009225;nucleotide-sugar metabolic process;0.0149986303984091!GO:0016070;RNA metabolic process;0.0151100038072105!GO:0043021;ribonucleoprotein binding;0.0151100038072105!GO:0005777;peroxisome;0.0151100038072105!GO:0042579;microbody;0.0151100038072105!GO:0032535;regulation of cellular component size;0.0151100038072105!GO:0031301;integral to organelle membrane;0.0155794780681583!GO:0012506;vesicle membrane;0.0157082601569255!GO:0006401;RNA catabolic process;0.0157659003739584!GO:0006612;protein targeting to membrane;0.0161367391171837!GO:0030659;cytoplasmic vesicle membrane;0.0162643374935033!GO:0015630;microtubule cytoskeleton;0.016313566717355!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.0164526633942299!GO:0005096;GTPase activator activity;0.0164526633942299!GO:0030127;COPII vesicle coat;0.0164526633942299!GO:0012507;ER to Golgi transport vesicle membrane;0.0164526633942299!GO:0042254;ribosome biogenesis and assembly;0.016605254248589!GO:0007040;lysosome organization and biogenesis;0.0167252851047318!GO:0006402;mRNA catabolic process;0.0168290011445759!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0169304629867069!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0178513308323461!GO:0048487;beta-tubulin binding;0.0178513308323461!GO:0003729;mRNA binding;0.0178884336300643!GO:0016311;dephosphorylation;0.0180590158909036!GO:0051539;4 iron, 4 sulfur cluster binding;0.0180975156466231!GO:0033673;negative regulation of kinase activity;0.0181097442917055!GO:0006469;negative regulation of protein kinase activity;0.0181097442917055!GO:0030522;intracellular receptor-mediated signaling pathway;0.0182394207247991!GO:0016363;nuclear matrix;0.0187984549533583!GO:0006733;oxidoreduction coenzyme metabolic process;0.0189507978606808!GO:0031272;regulation of pseudopodium formation;0.0189507978606808!GO:0031269;pseudopodium formation;0.0189507978606808!GO:0031344;regulation of cell projection organization and biogenesis;0.0189507978606808!GO:0031268;pseudopodium organization and biogenesis;0.0189507978606808!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0189507978606808!GO:0031274;positive regulation of pseudopodium formation;0.0189507978606808!GO:0032940;secretion by cell;0.0189842441051333!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.019119500096857!GO:0043284;biopolymer biosynthetic process;0.0192688372488786!GO:0008286;insulin receptor signaling pathway;0.0197072046370421!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0197072046370421!GO:0031529;ruffle organization and biogenesis;0.0198014592718418!GO:0043034;costamere;0.0199276764518484!GO:0030145;manganese ion binding;0.0200324058682985!GO:0006414;translational elongation;0.0203984914634587!GO:0009081;branched chain family amino acid metabolic process;0.0206055211351211!GO:0030320;cellular monovalent inorganic anion homeostasis;0.0207112362138921!GO:0055083;monovalent inorganic anion homeostasis;0.0207112362138921!GO:0055064;chloride ion homeostasis;0.0207112362138921!GO:0030644;cellular chloride ion homeostasis;0.0207112362138921!GO:0046467;membrane lipid biosynthetic process;0.020899568538886!GO:0006693;prostaglandin metabolic process;0.0209974609933616!GO:0006692;prostanoid metabolic process;0.0209974609933616!GO:0009101;glycoprotein biosynthetic process;0.0215040503959431!GO:0030331;estrogen receptor binding;0.0215519769860839!GO:0016779;nucleotidyltransferase activity;0.0216369071046776!GO:0005765;lysosomal membrane;0.0221610423424572!GO:0060090;molecular adaptor activity;0.0221610423424572!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0224676709540496!GO:0065007;biological regulation;0.0226751577605742!GO:0044433;cytoplasmic vesicle part;0.0230295483315931!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0230295483315931!GO:0008022;protein C-terminus binding;0.0230295483315931!GO:0016859;cis-trans isomerase activity;0.0230974111102182!GO:0015631;tubulin binding;0.0232771559231769!GO:0006611;protein export from nucleus;0.0233819491950058!GO:0006839;mitochondrial transport;0.0235744960286114!GO:0043681;protein import into mitochondrion;0.0235879706710943!GO:0016584;nucleosome positioning;0.0247464007309569!GO:0015036;disulfide oxidoreductase activity;0.0250654132304974!GO:0006281;DNA repair;0.025210181352721!GO:0019395;fatty acid oxidation;0.0254089918071332!GO:0030137;COPI-coated vesicle;0.0254602659627061!GO:0030241;muscle thick filament assembly;0.0254602659627061!GO:0031034;myosin filament assembly;0.0254602659627061!GO:0031033;myosin filament assembly or disassembly;0.0254602659627061!GO:0048739;cardiac muscle fiber development;0.0254602659627061!GO:0009967;positive regulation of signal transduction;0.0258667240224727!GO:0000118;histone deacetylase complex;0.0261850647076599!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0268683196009075!GO:0004300;enoyl-CoA hydratase activity;0.0269117666944935!GO:0050681;androgen receptor binding;0.0272073012873856!GO:0051348;negative regulation of transferase activity;0.0274972040812136!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0276221186077669!GO:0046870;cadmium ion binding;0.0279938777939912!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0286140637862187!GO:0030125;clathrin vesicle coat;0.0287572658601848!GO:0030665;clathrin coated vesicle membrane;0.0287572658601848!GO:0044437;vacuolar part;0.0289007577148755!GO:0001516;prostaglandin biosynthetic process;0.0289805965584455!GO:0046457;prostanoid biosynthetic process;0.0289805965584455!GO:0004448;isocitrate dehydrogenase activity;0.0290842757685841!GO:0051540;metal cluster binding;0.029299248839142!GO:0051536;iron-sulfur cluster binding;0.029299248839142!GO:0030140;trans-Golgi network transport vesicle;0.0297709212943556!GO:0004197;cysteine-type endopeptidase activity;0.0304655081274665!GO:0005815;microtubule organizing center;0.0308068867533607!GO:0001558;regulation of cell growth;0.0308883795043077!GO:0006950;response to stress;0.0316391347261552!GO:0008147;structural constituent of bone;0.0318244643429213!GO:0007229;integrin-mediated signaling pathway;0.0319482703114368!GO:0051049;regulation of transport;0.0323495572751234!GO:0051329;interphase of mitotic cell cycle;0.0324330958670218!GO:0051087;chaperone binding;0.0325469767585596!GO:0016721;oxidoreductase activity, acting on superoxide radicals as acceptor;0.0325469767585596!GO:0004784;superoxide dismutase activity;0.0325469767585596!GO:0000287;magnesium ion binding;0.032618976262828!GO:0044438;microbody part;0.0329369039121319!GO:0044439;peroxisomal part;0.0329369039121319!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0333635928227443!GO:0046489;phosphoinositide biosynthetic process;0.0344031923959049!GO:0018106;peptidyl-histidine phosphorylation;0.0348065206455496!GO:0065009;regulation of a molecular function;0.03496704071315!GO:0009083;branched chain family amino acid catabolic process;0.0350073576126215!GO:0006672;ceramide metabolic process;0.0365128762998837!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0374653989164439!GO:0051325;interphase;0.0376186562557852!GO:0030833;regulation of actin filament polymerization;0.03853383457364!GO:0035035;histone acetyltransferase binding;0.0388354553403405!GO:0008026;ATP-dependent helicase activity;0.0388957752733665!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0389269673782933!GO:0006486;protein amino acid glycosylation;0.0389604745930658!GO:0004721;phosphoprotein phosphatase activity;0.0391573310242982!GO:0006509;membrane protein ectodomain proteolysis;0.0391573310242982!GO:0033619;membrane protein proteolysis;0.0391573310242982!GO:0031589;cell-substrate adhesion;0.0391573310242982!GO:0003702;RNA polymerase II transcription factor activity;0.0391573310242982!GO:0016405;CoA-ligase activity;0.0402370121547508!GO:0046822;regulation of nucleocytoplasmic transport;0.0405056296359462!GO:0003746;translation elongation factor activity;0.040857331312523!GO:0005070;SH3/SH2 adaptor activity;0.0408875790095568!GO:0000059;protein import into nucleus, docking;0.0409175154725364!GO:0006607;NLS-bearing substrate import into nucleus;0.0409175154725364!GO:0016408;C-acyltransferase activity;0.0409528665478635!GO:0003690;double-stranded DNA binding;0.0412719051370972!GO:0005938;cell cortex;0.0412719051370972!GO:0007033;vacuole organization and biogenesis;0.041395076873752!GO:0016836;hydro-lyase activity;0.041395076873752!GO:0006730;one-carbon compound metabolic process;0.0415339158893962!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0423129447240194!GO:0006006;glucose metabolic process;0.0428764510355134!GO:0004463;leukotriene-A4 hydrolase activity;0.0429293869598992!GO:0004301;epoxide hydrolase activity;0.0429293869598992!GO:0043413;biopolymer glycosylation;0.0434676513221776!GO:0008234;cysteine-type peptidase activity;0.044833122048641!GO:0016581;NuRD complex;0.0458303031654665!GO:0006695;cholesterol biosynthetic process;0.0459171389277894!GO:0005862;muscle thin filament tropomyosin;0.0462602888156887!GO:0005100;Rho GTPase activator activity;0.046323753686739!GO:0005869;dynactin complex;0.0465848142023323!GO:0050811;GABA receptor binding;0.0468003645494581!GO:0032981;mitochondrial respiratory chain complex I assembly;0.047789666698365!GO:0010257;NADH dehydrogenase complex assembly;0.047789666698365!GO:0033108;mitochondrial respiratory chain complex assembly;0.047789666698365!GO:0016126;sterol biosynthetic process;0.0479282001045661!GO:0007160;cell-matrix adhesion;0.0499936770496185 | |||
|sample_id=10082 | |sample_id=10082 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=colon | |sample_tissue=colon | ||
|top_motifs=T:2.51685595312;HNF1A:2.26481593453;HNF4A_NR2F1,2:2.250357577;MTF1:2.0195738912;ZEB1:1.91953296919;SNAI1..3:1.84852274963;SP1:1.84577253136;XCPE1{core}:1.76175167433;SRF:1.74757599385;TFCP2:1.68508175726;SPZ1:1.57359607716;NR5A1,2:1.55579684154;LMO2:1.53483768299;TOPORS:1.49783622468;POU5F1:1.46290891293;TBP:1.45110658071;PITX1..3:1.4184334074;MTE{core}:1.40798323771;NR1H4:1.35284587197;FOX{D1,D2}:1.29205223937;TFAP2B:1.28838312091;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.28784347783;TLX1..3_NFIC{dimer}:1.25687624378;TFAP2{A,C}:1.25092547271;PAX6:1.2327377566;ESRRA:1.19624249182;POU2F1..3:1.18822784467;ZNF148:1.17727923005;RBPJ:1.15616570386;HIC1:1.14592288604;NANOG:1.03494054261;FOXP1:1.03283764443;ZNF423:1.02645294274;RREB1:1.02046664225;GTF2I:1.00396864501;GTF2A1,2:0.980642935186;FOX{I1,J2}:0.956708613779;GATA6:0.844032406738;FOX{F1,F2,J1}:0.832078140953;MED-1{core}:0.81118720533;EP300:0.794429569699;MAZ:0.767271777976;MYOD1:0.713541508277;IKZF1:0.70870087801;EGR1..3:0.706653989347;NKX2-3_NKX2-5:0.701618710623;POU6F1:0.691875593798;AR:0.687767001306;FOXO1,3,4:0.682260560319;NR3C1:0.618108813784;PBX1:0.606167802404;MYBL2:0.591395355008;SMAD1..7,9:0.525095171363;TFAP4:0.524394464639;NR6A1:0.502933542953;DBP:0.502600140392;PRDM1:0.486591213311;MYFfamily:0.465315748625;EBF1:0.459766388419;FOXL1:0.450464609935;OCT4_SOX2{dimer}:0.395714964241;HOX{A6,A7,B6,B7}:0.391559109258;BREu{core}:0.383404459749;FOXA2:0.366764446413;ADNP_IRX_SIX_ZHX:0.337438815622;VSX1,2:0.318581320582;ETS1,2:0.31502716122;HMX1:0.306444642366;ATF6:0.302929735368;MEF2{A,B,C,D}:0.292973189174;TLX2:0.280156136797;RXRA_VDR{dimer}:0.277467416833;GCM1,2:0.265429971202;TBX4,5:0.253318970135;SOX5:0.173991680707;PATZ1:0.154184835092;MZF1:0.149043447202;CDC5L:0.138129279489;ZFP161:0.119894501098;GLI1..3:0.119329121332;ONECUT1,2:0.115447294481;IRF7:0.0960507030757;GFI1:0.0408227868217;IKZF2:0.0331382631874;TEAD1:0.0287127560714;NHLH1,2:0.000754137238522;PAX5:-0.00171581083831;GFI1B:-0.00224961827912;ZNF238:-0.0150958148628;LHX3,4:-0.0266514993935;ZBTB6:-0.048649660535;TFDP1:-0.0756399328263;ESR1:-0.0968640647175;NFY{A,B,C}:-0.100438677925;RXR{A,B,G}:-0.105274809441;NKX6-1,2:-0.109280829392;REST:-0.110991005776;KLF4:-0.111111962196;HOX{A5,B5}:-0.124544022987;FOXN1:-0.127341951284;BPTF:-0.130882905334;NFATC1..3:-0.136006083156;HAND1,2:-0.140339065674;SOX{8,9,10}:-0.144318656472;HES1:-0.146431221918;SPIB:-0.186002614465;SOX2:-0.213100016552;E2F1..5:-0.218600598752;ATF2:-0.23764883188;RUNX1..3:-0.24448480543;IRF1,2:-0.262703176711;ARID5B:-0.274681897371;PRRX1,2:-0.288433363263;SPI1:-0.290357738208;JUN:-0.3237922649;XBP1:-0.329526374615;PPARG:-0.336165736697;PAX3,7:-0.347611693732;STAT2,4,6:-0.35363469104;FOXQ1:-0.354685795371;NFKB1_REL_RELA:-0.361133701605;STAT1,3:-0.397666901847;ZNF143:-0.40351361548;GATA4:-0.40368510322;AIRE:-0.408213374305;SREBF1,2:-0.423697154869;TP53:-0.435978738253;HBP1_HMGB_SSRP1_UBTF:-0.439389655977;TGIF1:-0.462539551489;UFEwm:-0.473487680137;PAX2:-0.486116544092;LEF1_TCF7_TCF7L1,2:-0.496545506888;ALX4:-0.497895665455;HLF:-0.504287501831;NFE2:-0.509261322523;GZF1:-0.51161387818;TEF:-0.525588563637;NFIL3:-0.526180213082;AHR_ARNT_ARNT2:-0.526441877874;NKX2-1,4:-0.584191295157;FOS_FOS{B,L1}_JUN{B,D}:-0.59660090697;ELF1,2,4:-0.61139824769;POU1F1:-0.618069617644;NRF1:-0.631678717767;DMAP1_NCOR{1,2}_SMARC:-0.644408999346;SOX17:-0.652102679638;bHLH_family:-0.673818108452;RFX2..5_RFXANK_RFXAP:-0.674265300339;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.70418851575;NFIX:-0.705412503483;CUX2:-0.72592366887;FOXM1:-0.728528718402;PDX1:-0.748197016782;FOSL2:-0.770833263982;ATF4:-0.773358768057;ZIC1..3:-0.793490190145;HOXA9_MEIS1:-0.807859562552;FOXD3:-0.810863408889;ATF5_CREB3:-0.860433707422;POU3F1..4:-0.874512711435;BACH2:-0.874876853157;HOX{A4,D4}:-0.904717575626;RFX1:-0.918566849565;CEBPA,B_DDIT3:-0.922026044533;CREB1:-0.940169343407;MAFB:-0.946616981924;RORA:-0.96455138344;PAX1,9:-0.974802370791;NFE2L2:-0.97841711436;NFE2L1:-0.993868912785;ZNF384:-1.12146582292;CDX1,2,4:-1.13244802184;TAL1_TCF{3,4,12}:-1.17868240909;HSF1,2:-1.23540155897;MYB:-1.25454029218;NKX2-2,8:-1.25457263667;YY1:-1.3316841021;ALX1:-1.38399529277;ELK1,4_GABP{A,B1}:-1.454689168;ZBTB16:-1.49005599066;NKX3-2:-1.51820004742;NANOG{mouse}:-1.53731651188;CRX:-1.60892913307;EVI1:-1.74281553679;FOXP3:-1.75507573827;EN1,2:-1.82256649097;NKX3-1:-1.84650952912;HMGA1,2:-1.96153980977;STAT5{A,B}:-1.98324088868;HIF1A:-2.18413068115;PAX4:-2.38014170474;PAX8:-2.45496151008 | |top_motifs=T:2.51685595312;HNF1A:2.26481593453;HNF4A_NR2F1,2:2.250357577;MTF1:2.0195738912;ZEB1:1.91953296919;SNAI1..3:1.84852274963;SP1:1.84577253136;XCPE1{core}:1.76175167433;SRF:1.74757599385;TFCP2:1.68508175726;SPZ1:1.57359607716;NR5A1,2:1.55579684154;LMO2:1.53483768299;TOPORS:1.49783622468;POU5F1:1.46290891293;TBP:1.45110658071;PITX1..3:1.4184334074;MTE{core}:1.40798323771;NR1H4:1.35284587197;FOX{D1,D2}:1.29205223937;TFAP2B:1.28838312091;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.28784347783;TLX1..3_NFIC{dimer}:1.25687624378;TFAP2{A,C}:1.25092547271;PAX6:1.2327377566;ESRRA:1.19624249182;POU2F1..3:1.18822784467;ZNF148:1.17727923005;RBPJ:1.15616570386;HIC1:1.14592288604;NANOG:1.03494054261;FOXP1:1.03283764443;ZNF423:1.02645294274;RREB1:1.02046664225;GTF2I:1.00396864501;GTF2A1,2:0.980642935186;FOX{I1,J2}:0.956708613779;GATA6:0.844032406738;FOX{F1,F2,J1}:0.832078140953;MED-1{core}:0.81118720533;EP300:0.794429569699;MAZ:0.767271777976;MYOD1:0.713541508277;IKZF1:0.70870087801;EGR1..3:0.706653989347;NKX2-3_NKX2-5:0.701618710623;POU6F1:0.691875593798;AR:0.687767001306;FOXO1,3,4:0.682260560319;NR3C1:0.618108813784;PBX1:0.606167802404;MYBL2:0.591395355008;SMAD1..7,9:0.525095171363;TFAP4:0.524394464639;NR6A1:0.502933542953;DBP:0.502600140392;PRDM1:0.486591213311;MYFfamily:0.465315748625;EBF1:0.459766388419;FOXL1:0.450464609935;OCT4_SOX2{dimer}:0.395714964241;HOX{A6,A7,B6,B7}:0.391559109258;BREu{core}:0.383404459749;FOXA2:0.366764446413;ADNP_IRX_SIX_ZHX:0.337438815622;VSX1,2:0.318581320582;ETS1,2:0.31502716122;HMX1:0.306444642366;ATF6:0.302929735368;MEF2{A,B,C,D}:0.292973189174;TLX2:0.280156136797;RXRA_VDR{dimer}:0.277467416833;GCM1,2:0.265429971202;TBX4,5:0.253318970135;SOX5:0.173991680707;PATZ1:0.154184835092;MZF1:0.149043447202;CDC5L:0.138129279489;ZFP161:0.119894501098;GLI1..3:0.119329121332;ONECUT1,2:0.115447294481;IRF7:0.0960507030757;GFI1:0.0408227868217;IKZF2:0.0331382631874;TEAD1:0.0287127560714;NHLH1,2:0.000754137238522;PAX5:-0.00171581083831;GFI1B:-0.00224961827912;ZNF238:-0.0150958148628;LHX3,4:-0.0266514993935;ZBTB6:-0.048649660535;TFDP1:-0.0756399328263;ESR1:-0.0968640647175;NFY{A,B,C}:-0.100438677925;RXR{A,B,G}:-0.105274809441;NKX6-1,2:-0.109280829392;REST:-0.110991005776;KLF4:-0.111111962196;HOX{A5,B5}:-0.124544022987;FOXN1:-0.127341951284;BPTF:-0.130882905334;NFATC1..3:-0.136006083156;HAND1,2:-0.140339065674;SOX{8,9,10}:-0.144318656472;HES1:-0.146431221918;SPIB:-0.186002614465;SOX2:-0.213100016552;E2F1..5:-0.218600598752;ATF2:-0.23764883188;RUNX1..3:-0.24448480543;IRF1,2:-0.262703176711;ARID5B:-0.274681897371;PRRX1,2:-0.288433363263;SPI1:-0.290357738208;JUN:-0.3237922649;XBP1:-0.329526374615;PPARG:-0.336165736697;PAX3,7:-0.347611693732;STAT2,4,6:-0.35363469104;FOXQ1:-0.354685795371;NFKB1_REL_RELA:-0.361133701605;STAT1,3:-0.397666901847;ZNF143:-0.40351361548;GATA4:-0.40368510322;AIRE:-0.408213374305;SREBF1,2:-0.423697154869;TP53:-0.435978738253;HBP1_HMGB_SSRP1_UBTF:-0.439389655977;TGIF1:-0.462539551489;UFEwm:-0.473487680137;PAX2:-0.486116544092;LEF1_TCF7_TCF7L1,2:-0.496545506888;ALX4:-0.497895665455;HLF:-0.504287501831;NFE2:-0.509261322523;GZF1:-0.51161387818;TEF:-0.525588563637;NFIL3:-0.526180213082;AHR_ARNT_ARNT2:-0.526441877874;NKX2-1,4:-0.584191295157;FOS_FOS{B,L1}_JUN{B,D}:-0.59660090697;ELF1,2,4:-0.61139824769;POU1F1:-0.618069617644;NRF1:-0.631678717767;DMAP1_NCOR{1,2}_SMARC:-0.644408999346;SOX17:-0.652102679638;bHLH_family:-0.673818108452;RFX2..5_RFXANK_RFXAP:-0.674265300339;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.70418851575;NFIX:-0.705412503483;CUX2:-0.72592366887;FOXM1:-0.728528718402;PDX1:-0.748197016782;FOSL2:-0.770833263982;ATF4:-0.773358768057;ZIC1..3:-0.793490190145;HOXA9_MEIS1:-0.807859562552;FOXD3:-0.810863408889;ATF5_CREB3:-0.860433707422;POU3F1..4:-0.874512711435;BACH2:-0.874876853157;HOX{A4,D4}:-0.904717575626;RFX1:-0.918566849565;CEBPA,B_DDIT3:-0.922026044533;CREB1:-0.940169343407;MAFB:-0.946616981924;RORA:-0.96455138344;PAX1,9:-0.974802370791;NFE2L2:-0.97841711436;NFE2L1:-0.993868912785;ZNF384:-1.12146582292;CDX1,2,4:-1.13244802184;TAL1_TCF{3,4,12}:-1.17868240909;HSF1,2:-1.23540155897;MYB:-1.25454029218;NKX2-2,8:-1.25457263667;YY1:-1.3316841021;ALX1:-1.38399529277;ELK1,4_GABP{A,B1}:-1.454689168;ZBTB16:-1.49005599066;NKX3-2:-1.51820004742;NANOG{mouse}:-1.53731651188;CRX:-1.60892913307;EVI1:-1.74281553679;FOXP3:-1.75507573827;EN1,2:-1.82256649097;NKX3-1:-1.84650952912;HMGA1,2:-1.96153980977;STAT5{A,B}:-1.98324088868;HIF1A:-2.18413068115;PAX4:-2.38014170474;PAX8:-2.45496151008 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10082-102B1;search_select_hide=table117:FF:10082-102B1 | |||
}} | }} | ||
Latest revision as of 12:20, 3 June 2020
| Name: | colon, adult, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11794 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11794
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11794
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.28 |
| 10 | 10 | 0.0601 |
| 100 | 100 | 0.296 |
| 101 | 101 | 0.698 |
| 102 | 102 | 0.43 |
| 103 | 103 | 0.0183 |
| 104 | 104 | 0.931 |
| 105 | 105 | 0.0818 |
| 106 | 106 | 0.621 |
| 107 | 107 | 0.0347 |
| 108 | 108 | 0.332 |
| 109 | 109 | 0.618 |
| 11 | 11 | 0.539 |
| 110 | 110 | 0.406 |
| 111 | 111 | 0.157 |
| 112 | 112 | 0.625 |
| 113 | 113 | 0.439 |
| 114 | 114 | 0.108 |
| 115 | 115 | 0.879 |
| 116 | 116 | 0.729 |
| 117 | 117 | 0.0199 |
| 118 | 118 | 0.298 |
| 119 | 119 | 0.553 |
| 12 | 12 | 0.484 |
| 120 | 120 | 0.148 |
| 121 | 121 | 0.845 |
| 122 | 122 | 0.962 |
| 123 | 123 | 0.0395 |
| 124 | 124 | 0.737 |
| 125 | 125 | 0.257 |
| 126 | 126 | 0.95 |
| 127 | 127 | 0.111 |
| 128 | 128 | 0.0195 |
| 129 | 129 | 0.629 |
| 13 | 13 | 0.32 |
| 130 | 130 | 0.844 |
| 131 | 131 | 0.352 |
| 132 | 132 | 0.00479 |
| 133 | 133 | 0.0363 |
| 134 | 134 | 0.0124 |
| 135 | 135 | 0.121 |
| 136 | 136 | 0.767 |
| 137 | 137 | 0.104 |
| 138 | 138 | 0.68 |
| 139 | 139 | 0.37 |
| 14 | 14 | 0.499 |
| 140 | 140 | 0.85 |
| 141 | 141 | 0.282 |
| 142 | 142 | 0.951 |
| 143 | 143 | 0.0137 |
| 144 | 144 | 0.763 |
| 145 | 145 | 0.14 |
| 146 | 146 | 0.269 |
| 147 | 147 | 0.475 |
| 148 | 148 | 0.91 |
| 149 | 149 | 0.171 |
| 15 | 15 | 0.184 |
| 150 | 150 | 0.605 |
| 151 | 151 | 0.468 |
| 152 | 152 | 0.186 |
| 153 | 153 | 0.867 |
| 154 | 154 | 0.937 |
| 155 | 155 | 0.73 |
| 156 | 156 | 0.556 |
| 157 | 157 | 0.945 |
| 158 | 158 | 0.379 |
| 159 | 159 | 0.517 |
| 16 | 16 | 0.429 |
| 160 | 160 | 0.903 |
| 161 | 161 | 0.506 |
| 162 | 162 | 0.0914 |
| 163 | 163 | 0.927 |
| 164 | 164 | 0.0701 |
| 165 | 165 | 0.621 |
| 166 | 166 | 0.476 |
| 167 | 167 | 0.217 |
| 168 | 168 | 0.169 |
| 169 | 169 | 0.375 |
| 17 | 17 | 0.604 |
| 18 | 18 | 0.00666 |
| 19 | 19 | 0.375 |
| 2 | 2 | 0.0355 |
| 20 | 20 | 0.125 |
| 21 | 21 | 0.313 |
| 22 | 22 | 0.583 |
| 23 | 23 | 0.385 |
| 24 | 24 | 0.375 |
| 25 | 25 | 0.547 |
| 26 | 26 | 0.564 |
| 27 | 27 | 0.438 |
| 28 | 28 | 0.676 |
| 29 | 29 | 0.0511 |
| 3 | 3 | 0.7 |
| 30 | 30 | 0.048 |
| 31 | 31 | 0.711 |
| 32 | 32 | 0.749 |
| 33 | 33 | 0.0885 |
| 34 | 34 | 0.218 |
| 35 | 35 | 0.112 |
| 36 | 36 | 0.0362 |
| 37 | 37 | 0.262 |
| 38 | 38 | 0.416 |
| 39 | 39 | 0.337 |
| 4 | 4 | 0.967 |
| 40 | 40 | 0.627 |
| 41 | 41 | 0.104 |
| 42 | 42 | 0.357 |
| 43 | 43 | 0.76 |
| 44 | 44 | 0.756 |
| 45 | 45 | 0.17 |
| 46 | 46 | 0.461 |
| 47 | 47 | 0.432 |
| 48 | 48 | 0.527 |
| 49 | 49 | 0.777 |
| 5 | 5 | 0.735 |
| 50 | 50 | 0.434 |
| 51 | 51 | 0.805 |
| 52 | 52 | 0.101 |
| 53 | 53 | 0.164 |
| 54 | 54 | 0.711 |
| 55 | 55 | 0.361 |
| 56 | 56 | 0.639 |
| 57 | 57 | 0.263 |
| 58 | 58 | 0.81 |
| 59 | 59 | 0.841 |
| 6 | 6 | 0.654 |
| 60 | 60 | 0.358 |
| 61 | 61 | 0.819 |
| 62 | 62 | 0.848 |
| 63 | 63 | 0.833 |
| 64 | 64 | 0.971 |
| 65 | 65 | 0.286 |
| 66 | 66 | 0.138 |
| 67 | 67 | 0.0757 |
| 68 | 68 | 0.861 |
| 69 | 69 | 0.505 |
| 7 | 7 | 0.978 |
| 70 | 70 | 0.337 |
| 71 | 71 | 0.0781 |
| 72 | 72 | 0.389 |
| 73 | 73 | 0.923 |
| 74 | 74 | 0.426 |
| 75 | 75 | 0.00661 |
| 76 | 76 | 0.0166 |
| 77 | 77 | 0.0327 |
| 78 | 78 | 0.836 |
| 79 | 79 | 0.471 |
| 8 | 8 | 0.973 |
| 80 | 80 | 0.963 |
| 81 | 81 | 0.895 |
| 82 | 82 | 0.494 |
| 83 | 83 | 0.667 |
| 84 | 84 | 0.26 |
| 85 | 85 | 0.403 |
| 86 | 86 | 0.496 |
| 87 | 87 | 0.469 |
| 88 | 88 | 0.872 |
| 89 | 89 | 0.944 |
| 9 | 9 | 0.446 |
| 90 | 90 | 0.00414 |
| 91 | 91 | 0.0798 |
| 92 | 92 | 0.511 |
| 93 | 93 | 0.123 |
| 94 | 94 | 0.0431 |
| 95 | 95 | 0.15 |
| 96 | 96 | 0.444 |
| 97 | 97 | 0.936 |
| 98 | 98 | 0.972 |
| 99 | 99 | 0.0475 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11794
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0010014 human colon - adult sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0001155 (colon)
0000160 (intestine)
0000479 (tissue)
0001007 (digestive system)
0000064 (organ part)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0000059 (large intestine)
0005409 (gastrointestinal system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010014 (human colon - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)
