FF:10085-102B4: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00004937 | |||
|accession_numbers=CAGE;DRX008627;DRR009499;DRZ000924;DRZ002309;DRZ012274;DRZ013659 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000955,UBERON:0000479,UBERON:0004121,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0001017,UBERON:0001016 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000955,UBERON:0000479,UBERON:0004121,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0001017,UBERON:0001016 | ||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr17:37764128..37764258,-!p1@NEUROD2!2.32!205.60!NEUROD2;;chr14:29235961..29236008,+!p1@FOXG1!2.31!201.61!FOXG1;;chr21:34442439..34442455,+!p1@OLIG1!2.27!183.64!OLIG1;;chr1:244214577..244214593,+!p1@ZNF238!2.24!173.66!ZNF238;;chrX:25034067..25034088,-!p1@ARX!2.24!171.67!ARX;;chr2:5832508..5832524,+!p1@SOX11!2.16!143.72!SOX11;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!2.06!113.78!POU3F3;;chr2:162272785..162272836,+!p1@TBR1!2.06!113.78!TBR1;;chr7:100065686..100065701,-!p2@TSC22D4!2.03!105.80!TSC22D4;;chr7:31380292..31380351,-!p1@NEUROD6!2.02!103.80!NEUROD6;;chr1:2461692..2461710,-!p1@HES5!2.00!99.81!HES5;;chr9:126773880..126773895,+!p2@LHX2!1.99!97.81!LHX2;;chr4:81118647..81118666,+!p1@PRDM8!1.95!113.78!PRDM8;;chr5:88178983..88179012,-!p1@MEF2C!1.92!602.83!MEF2C;;chr21:34398234..34398250,+!p1@OLIG2!1.90!77.85!OLIG2;;chr2:2334997..2335053,-!p1@MYT1L!1.90!77.85!MYT1L;;chr9:126774018..126774055,+!p1@LHX2!1.86!71.86!LHX2;;chr14:29234581..29234601,+!p2@FOXG1!1.85!69.86!FOXG1;;chr19:38720294..38720348,-!p1@DPF1!1.82!79.85!DPF1;;chr3:181429704..181429722,+!p1@SOX2!1.81!63.88!SOX2;;chr12:103351444..103351461,+!p1@ASCL1!1.81!63.88!ASCL1;;chr2:200322229..200322251,-!p3@SATB2!1.80!61.88!SATB2;;chr19:13134772..13134822,+!p2@NFIX!1.77!83.84!NFIX;;chr1:151032922..151032951,+!p2@MLLT11!1.76!91.82!MLLT11;;chr2:5832493..5832507,+!p2@SOX11!1.76!55.89!SOX11;;chr2:200322723..200322739,-!p6@SATB2!1.71!49.90!SATB2;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.71!49.90!PEG3;;chr9:77112244..77112262,+!p1@RORB!1.69!53.90!RORB;;chr14:33403881..33403924,+!p1@NPAS3!1.69!47.91!NPAS3;;chr5:88179017..88179046,-!p2@MEF2C!1.63!159.69!MEF2C;;chr7:96654133..96654150,-!p1@DLX5!1.63!41.92!DLX5;;chr8:65492756..65492768,+!p2@BHLHE22!1.63!41.92!BHLHE22;;chr14:29236269..29236285,+!p3@FOXG1!1.63!41.92!FOXG1;;chr2:200325204..200325243,-!p7@SATB2!1.63!41.92!SATB2;;chr2:2335109..2335134,-!p2@MYT1L!1.63!41.92!MYT1L;;chr9:124991204..124991246,-!p1@LHX6!1.63!41.92!LHX6;;chr1:38512457..38512474,-!p1@POU3F1!1.62!43.92!POU3F1;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.61!39.92!POU3F3;;chr2:60781201..60781258,-!p3@BCL11A!1.61!39.92!BCL11A;;chr15:80696703..80696754,+!p1@ARNT2!1.59!49.90!ARNT2;;chr2:16080659..16080685,+!p1@MYCN!1.59!37.93!MYCN;;chr2:162272889..162272915,+!p2@TBR1!1.59!37.93!TBR1;;chr2:172950227..172950249,+!p2@DLX1!1.59!37.93!DLX1;;chr11:8102846..8102892,+!p1@TUB!1.57!49.90!TUB;;chr19:13135582..13135600,+!p3@NFIX!1.57!35.93!NFIX;;chrX:82763292..82763317,+!p1@POU3F4!1.57!35.93!POU3F4;;chr1:151032860..151032918,+!p1@MLLT11!1.56!403.22!MLLT11;;chr8:93107451..93107468,-!p2@RUNX1T1!1.54!33.93!RUNX1T1;;chr15:80733570..80733659,+!p2@ARNT2!1.54!33.93!ARNT2;;chr2:172967621..172967637,-!p1@DLX2!1.52!83.84!DLX2;;chr17:7492684..7492778,-!p2@SOX15!1.52!65.87!SOX15;;chr2:145277882..145277967,-!p3@ZEB2!1.52!53.90!ZEB2;;chr4:57547454..57547469,-!p1@HOPX!1.52!31.94!HOPX;;chr18:53070846..53070902,-!p6@TCF4!1.52!31.94!TCF4;;chr5:88179271..88179286,-!p7@MEF2C!1.49!29.94!MEF2C;;chr8:93115274..93115323,-!p4@RUNX1T1!1.49!29.94!RUNX1T1;;chr9:126774058..126774081,+!p3@LHX2!1.49!29.94!LHX2;;chr2:200320768..200320800,-!p4@SATB2!1.46!27.95!SATB2;;chr5:88179230..88179270,-!p4@MEF2C!1.45!51.90!MEF2C;;chr20:20348740..20348757,+!p1@INSM1!1.43!25.95!INSM1;;chr12:106976774..106976788,+!p1@RFX4!1.43!25.95!RFX4;;chr16:1031762..1031781,+!p1@SOX8!1.43!25.95!SOX8;;chr2:60780607..60780624,-!p2@BCL11A!1.42!75.85!BCL11A;;chr21:34442540..34442560,+!p2@OLIG1!1.40!23.95!OLIG1;;chrX:139587228..139587234,-!p1@SOX3!1.40!23.95!SOX3;;chr2:200323414..200323455,-!p1@SATB2!1.39!49.90!SATB2;;chr2:166326200..166326216,+!p1@CSRNP3!1.39!33.93!CSRNP3;;chr1:214161272..214161322,+!p1@PROX1!1.38!31.94!PROX1;;chr1:41827095..41827155,+!p1@FOXO6!1.37!29.94!FOXO6;;chr17:53342311..53342400,+!p1@HLF!1.37!25.95!HLF;;chr2:175199675..175199688,+!p1@SP9!1.36!21.96!SP9;;chr8:65492915..65492932,+!p1@BHLHE22!1.36!21.96!BHLHE22;;chr19:47523058..47523114,+!p1@NPAS1!1.36!21.96!NPAS1;;chr18:42260059..42260132,+!p1@SETBP1!1.34!33.93!SETBP1;;chrX:84498989..84499003,+!p1@ZNF711!1.33!27.95!ZNF711;;chr7:150974206..150974255,-!p1@SMARCD3!1.32!121.76!SMARCD3;;chr2:239148671..239148686,-!p1@HES6!1.32!71.86!HES6;;chr2:200322259..200322280,-!p5@SATB2!1.32!19.96!SATB2;;chr6:99282475..99282501,+!p1@POU3F2!1.32!19.96!POU3F2;;chr18:53070913..53070933,-!p16@TCF4!1.32!19.96!TCF4;;chr19:13135731..13135787,+!p10@NFIX!1.32!19.96!NFIX;;chrY:21906594..21906622,-!p1@KDM5D!1.32!19.96!KDM5D;;chr12:24102576..24102623,-!p2@SOX5!1.32!19.96!SOX5;;chr14:29236301..29236317,+!p5@FOXG1!1.32!19.96!FOXG1;;chr2:60780753..60780800,-!p1@BCL11A!1.31!93.82!BCL11A;;chr19:57183114..57183145,-!p1@ZNF835!1.31!21.96!ZNF835;;chr2:113057415..113057477,+!p3@ZC3H6!1.29!23.95!ZC3H6;;chr5:92919375..92919438,+!p6@NR2F1!1.29!19.96!NR2F1;;chr8:80679993..80680011,-!p1@HEY1!1.28!25.95!HEY1;;chr8:30890810..30890880,-!p1@PURG!1.28!17.97!PURG;;chr2:105470614..105470625,+!p@chr2:105470614..105470625,+!1.28!17.97!POU3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| |expression_enrichment_score=chr17:37764128..37764258,-!p1@NEUROD2!2.32!205.60!NEUROD2;;chr14:29235961..29236008,+!p1@FOXG1!2.31!201.61!FOXG1;;chr21:34442439..34442455,+!p1@OLIG1!2.27!183.64!OLIG1;;chr1:244214577..244214593,+!p1@ZNF238!2.24!173.66!ZNF238;;chrX:25034067..25034088,-!p1@ARX!2.24!171.67!ARX;;chr2:5832508..5832524,+!p1@SOX11!2.16!143.72!SOX11;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!2.06!113.78!POU3F3;;chr2:162272785..162272836,+!p1@TBR1!2.06!113.78!TBR1;;chr7:100065686..100065701,-!p2@TSC22D4!2.03!105.80!TSC22D4;;chr7:31380292..31380351,-!p1@NEUROD6!2.02!103.80!NEUROD6;;chr1:2461692..2461710,-!p1@HES5!2.00!99.81!HES5;;chr9:126773880..126773895,+!p2@LHX2!1.99!97.81!LHX2;;chr4:81118647..81118666,+!p1@PRDM8!1.95!113.78!PRDM8;;chr5:88178983..88179012,-!p1@MEF2C!1.92!602.83!MEF2C;;chr21:34398234..34398250,+!p1@OLIG2!1.90!77.85!OLIG2;;chr2:2334997..2335053,-!p1@MYT1L!1.90!77.85!MYT1L;;chr9:126774018..126774055,+!p1@LHX2!1.86!71.86!LHX2;;chr14:29234581..29234601,+!p2@FOXG1!1.85!69.86!FOXG1;;chr19:38720294..38720348,-!p1@DPF1!1.82!79.85!DPF1;;chr3:181429704..181429722,+!p1@SOX2!1.81!63.88!SOX2;;chr12:103351444..103351461,+!p1@ASCL1!1.81!63.88!ASCL1;;chr2:200322229..200322251,-!p3@SATB2!1.80!61.88!SATB2;;chr19:13134772..13134822,+!p2@NFIX!1.77!83.84!NFIX;;chr1:151032922..151032951,+!p2@MLLT11!1.76!91.82!MLLT11;;chr2:5832493..5832507,+!p2@SOX11!1.76!55.89!SOX11;;chr2:200322723..200322739,-!p6@SATB2!1.71!49.90!SATB2;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.71!49.90!PEG3;;chr9:77112244..77112262,+!p1@RORB!1.69!53.90!RORB;;chr14:33403881..33403924,+!p1@NPAS3!1.69!47.91!NPAS3;;chr5:88179017..88179046,-!p2@MEF2C!1.63!159.69!MEF2C;;chr7:96654133..96654150,-!p1@DLX5!1.63!41.92!DLX5;;chr8:65492756..65492768,+!p2@BHLHE22!1.63!41.92!BHLHE22;;chr14:29236269..29236285,+!p3@FOXG1!1.63!41.92!FOXG1;;chr2:200325204..200325243,-!p7@SATB2!1.63!41.92!SATB2;;chr2:2335109..2335134,-!p2@MYT1L!1.63!41.92!MYT1L;;chr9:124991204..124991246,-!p1@LHX6!1.63!41.92!LHX6;;chr1:38512457..38512474,-!p1@POU3F1!1.62!43.92!POU3F1;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.61!39.92!POU3F3;;chr2:60781201..60781258,-!p3@BCL11A!1.61!39.92!BCL11A;;chr15:80696703..80696754,+!p1@ARNT2!1.59!49.90!ARNT2;;chr2:16080659..16080685,+!p1@MYCN!1.59!37.93!MYCN;;chr2:162272889..162272915,+!p2@TBR1!1.59!37.93!TBR1;;chr2:172950227..172950249,+!p2@DLX1!1.59!37.93!DLX1;;chr11:8102846..8102892,+!p1@TUB!1.57!49.90!TUB;;chr19:13135582..13135600,+!p3@NFIX!1.57!35.93!NFIX;;chrX:82763292..82763317,+!p1@POU3F4!1.57!35.93!POU3F4;;chr1:151032860..151032918,+!p1@MLLT11!1.56!403.22!MLLT11;;chr8:93107451..93107468,-!p2@RUNX1T1!1.54!33.93!RUNX1T1;;chr15:80733570..80733659,+!p2@ARNT2!1.54!33.93!ARNT2;;chr2:172967621..172967637,-!p1@DLX2!1.52!83.84!DLX2;;chr17:7492684..7492778,-!p2@SOX15!1.52!65.87!SOX15;;chr2:145277882..145277967,-!p3@ZEB2!1.52!53.90!ZEB2;;chr4:57547454..57547469,-!p1@HOPX!1.52!31.94!HOPX;;chr18:53070846..53070902,-!p6@TCF4!1.52!31.94!TCF4;;chr5:88179271..88179286,-!p7@MEF2C!1.49!29.94!MEF2C;;chr8:93115274..93115323,-!p4@RUNX1T1!1.49!29.94!RUNX1T1;;chr9:126774058..126774081,+!p3@LHX2!1.49!29.94!LHX2;;chr2:200320768..200320800,-!p4@SATB2!1.46!27.95!SATB2;;chr5:88179230..88179270,-!p4@MEF2C!1.45!51.90!MEF2C;;chr20:20348740..20348757,+!p1@INSM1!1.43!25.95!INSM1;;chr12:106976774..106976788,+!p1@RFX4!1.43!25.95!RFX4;;chr16:1031762..1031781,+!p1@SOX8!1.43!25.95!SOX8;;chr2:60780607..60780624,-!p2@BCL11A!1.42!75.85!BCL11A;;chr21:34442540..34442560,+!p2@OLIG1!1.40!23.95!OLIG1;;chrX:139587228..139587234,-!p1@SOX3!1.40!23.95!SOX3;;chr2:200323414..200323455,-!p1@SATB2!1.39!49.90!SATB2;;chr2:166326200..166326216,+!p1@CSRNP3!1.39!33.93!CSRNP3;;chr1:214161272..214161322,+!p1@PROX1!1.38!31.94!PROX1;;chr1:41827095..41827155,+!p1@FOXO6!1.37!29.94!FOXO6;;chr17:53342311..53342400,+!p1@HLF!1.37!25.95!HLF;;chr2:175199675..175199688,+!p1@SP9!1.36!21.96!SP9;;chr8:65492915..65492932,+!p1@BHLHE22!1.36!21.96!BHLHE22;;chr19:47523058..47523114,+!p1@NPAS1!1.36!21.96!NPAS1;;chr18:42260059..42260132,+!p1@SETBP1!1.34!33.93!SETBP1;;chrX:84498989..84499003,+!p1@ZNF711!1.33!27.95!ZNF711;;chr7:150974206..150974255,-!p1@SMARCD3!1.32!121.76!SMARCD3;;chr2:239148671..239148686,-!p1@HES6!1.32!71.86!HES6;;chr2:200322259..200322280,-!p5@SATB2!1.32!19.96!SATB2;;chr6:99282475..99282501,+!p1@POU3F2!1.32!19.96!POU3F2;;chr18:53070913..53070933,-!p16@TCF4!1.32!19.96!TCF4;;chr19:13135731..13135787,+!p10@NFIX!1.32!19.96!NFIX;;chrY:21906594..21906622,-!p1@KDM5D!1.32!19.96!KDM5D;;chr12:24102576..24102623,-!p2@SOX5!1.32!19.96!SOX5;;chr14:29236301..29236317,+!p5@FOXG1!1.32!19.96!FOXG1;;chr2:60780753..60780800,-!p1@BCL11A!1.31!93.82!BCL11A;;chr19:57183114..57183145,-!p1@ZNF835!1.31!21.96!ZNF835;;chr2:113057415..113057477,+!p3@ZC3H6!1.29!23.95!ZC3H6;;chr5:92919375..92919438,+!p6@NR2F1!1.29!19.96!NR2F1;;chr8:80679993..80680011,-!p1@HEY1!1.28!25.95!HEY1;;chr8:30890810..30890880,-!p1@PURG!1.28!17.97!PURG;;chr2:105470614..105470625,+!p@chr2:105470614..105470625,+!1.28!17.97!POU3F3;;chr2:172949484..172949522,+!p1@DLX1!1.28!17.97!DLX1;;chr1:244214611..244214624,+!p4@ZNF238!1.28!17.97!ZNF238;;chr5:88179195..88179224,-!p3@MEF2C!1.27!27.95!MEF2C;;chr3:18486354..18486377,-!p2@SATB1!1.27!21.96!SATB1;;chr14:21994337..21994442,-!p1@SALL2!1.25!45.91!SALL2;;chr20:62680984..62680999,-!p1@SOX18!1.25!21.96!SOX18;;chr20:2673383..2673441,+!p1@EBF4!1.24!25.95!EBF4;;chr2:200322654..200322707,-!p2@SATB2!1.24!23.95!SATB2;;chr5:92919100..92919135,+!p3@NR2F1!1.24!19.96!NR2F1;;chr8:65492520..65492554,+!p3@BHLHE22!1.23!15.97!BHLHE22;;chr8:93115362..93115391,-!p9@RUNX1T1!1.23!15.97!RUNX1T1;;chr3:181429741..181429767,+!p2@SOX2!1.23!15.97!SOX2;;chr4:113437332..113437337,-!p1@NEUROG2!1.23!15.97!NEUROG2;;chr20:657284..657307,-!p1@SCRT2!1.23!15.97!SCRT2;;chr12:111471526..111471541,+!p1@CUX2!1.23!15.97!CUX2;;chr15:80696666..80696700,+!p4@ARNT2!1.23!15.97!ARNT2;;chr6:91006518..91006570,-!p1@BACH2!1.22!35.93!BACH2;;chr6:19837592..19837621,+!p1@ID4!1.21!91.82!ID4;;chr3:141105705..141105770,+!p4@ZBTB38!1.20!17.97!ZBTB38;;chr16:71918033..71918101,-!p1@ZNF821!1.19!53.90!ZNF821;;chr19:13134457..13134462,+!p5@NFIX!1.19!25.95!NFIX;;chr1:244219775..244219893,+!p2@ZNF238!1.19!19.96!ZNF238;;chr18:42260030..42260055,+!p3@SETBP1!1.19!17.97!SETBP1;;chr11:8102819..8102845,+!p3@TUB!1.19!17.97!TUB;;chr6:21597765..21597779,+!p2@SOX4!1.18!111.78!SOX4;;chr5:88119715..88119757,-!p11@MEF2C!1.18!13.97!MEF2C;;chr8:93107696..93107716,-!p8@RUNX1T1!1.18!13.97!RUNX1T1;;chr22:38380543..38380569,-!p1@SOX10!1.18!13.97!SOX10;;chr2:105470599..105470610,+!p@chr2:105470599..105470610,+!1.18!13.97!POU3F3;;chr2:166428839..166428859,+!p2@CSRNP3!1.18!13.97!CSRNP3;;chr2:2335070..2335098,-!p4@MYT1L!1.18!13.97!MYT1L;;chr2:63277948..63277974,+!p1@OTX1!1.18!13.97!OTX1;;chr2:73144683..73144697,+!p3@EMX1!1.18!13.97!EMX1;;chr1:42384343..42384380,-!p4@HIVEP3!1.18!13.97!HIVEP3;;chr6:21593973..21593988,+!p1@SOX4!1.17!489.05!SOX4;;chr20:42136308..42136358,+!p2@L3MBTL1!1.17!17.97!L3MBTL;;chr6:91006575..91006602,-!p2@BACH2!1.16!19.96!BACH2;;chr7:6655225..6655279,+!p1@ENST00000457543!1.15!19.96!ZNF853;;chr3:33482052..33482116,-!p2@UBP1!1.15!19.96!UBP1;;chr17:38219209..38219230,+!p1@THRA!1.13!163.68!THRA;;chr18:52988979..52988993,-!p18@TCF4!1.11!11.98!TCF4;;chr19:13135386..13135435,+!p4@NFIX!1.11!11.98!NFIX;;chr6:99282592..99282616,+!p3@POU3F2!1.11!11.98!POU3F2;;chr7:20826504..20826526,-!p1@SP8!1.11!11.98!SP8;;chr11:125034640..125034655,+!p1@PKNOX2!1.11!11.98!PKNOX2;;chr19:58545454..58545498,+!p1@ZSCAN1!1.11!11.98!ZSCAN1;;chr2:16080823..16080836,+!p5@MYCN!1.11!11.98!MYCN;;chr2:162273241..162273253,+!p4@TBR1!1.11!11.98!TBR1;;chr2:200213794..200213807,-!p9@SATB2!1.11!11.98!SATB2;;chr2:200325244..200325264,-!p11@SATB2!1.11!11.98!SATB2;;chrY:21906761..21906810,-!p2@KDM5D!1.11!11.98!KDM5D;;chrX:101186981..101187030,-!p1@ZMAT1!1.10!37.93!ZMAT1;;chr7:138666053..138666146,-!p1@KIAA1549!1.08!45.91!KIAA1549;;chr1:164528616..164528660,+!p5@PBX1!1.07!21.96!PBX1;;chr19:38183208..38183225,-!p1@ZNF781!1.07!13.97!ZNF781;;chr14:35873101..35873119,-!p6@NFKBIA!1.06!13.97!NFKBIA;;chr18:53068911..53068935,-!p4@TCF4!1.06!11.98!TCF4;;chr19:44123734..44123796,-!p1@ZNF428!1.05!381.26!ZNF428;;chr15:37392724..37392757,-!p1@MEIS2!1.05!47.91!MEIS2;;chr3:18466787..18466839,-!p1@SATB1!1.05!45.91!SATB1;;chr4:81105027..81105039,+!p3@PRDM8!1.05!11.98!PRDM8;;chr2:145277640..145277771,-!p1@ZEB2!1.04!135.74!ZEB2;;chr1:151032782..151032801,+!p4@MLLT11!1.04!19.96!MLLT11;;chr19:58629742..58629787,-!p2@ZSCAN18!1.04!9.98!ZSCAN18;;chr1:42384532..42384603,-!p2@HIVEP3!1.04!9.98!HIVEP3;;chr21:34442584..34442587,+!p3@OLIG1!1.04!9.98!OLIG1;;chr2:100721328..100721348,-!p4@AFF3!1.04!9.98!AFF3;;chr2:166428861..166428883,+!p3@CSRNP3!1.04!9.98!CSRNP3;;chr2:60780516..60780526,-!p11@BCL11A!1.04!9.98!BCL11A;;chr10:118897911..118897974,-!p1@VAX1!1.04!9.98!VAX1;;chr11:31839488..31839515,-!p3@PAX6!1.04!9.98!PAX6;;chr11:8040739..8040815,+!p4@TUB!1.04!9.98!TUB;;chr14:29236169..29236216,+!p6@FOXG1!1.04!9.98!FOXG1;;chr14:33403648..33403710,+!p3@NPAS3!1.04!9.98!NPAS3;;chrX:82763265..82763283,+!p2@POU3F4!1.04!9.98!POU3F4;;chr9:77112225..77112238,+!p2@RORB!1.04!9.98!RORB;;chr9:14308004..14308041,-!p14@NFIB!1.04!9.98!NFIB;;chrX:102000893..102000918,+!p4@BHLHB9!1.04!9.98!BHLHB9;;chr16:51185318..51185348,-!p2@SALL1!1.04!9.98!SALL1;;chr6:21594206..21594221,+!p15@SOX4!1.04!9.98!SOX4;;chr7:138666186..138666213,-!p2@KIAA1549!1.04!9.98!KIAA1549;;chr7:96634878..96634900,+!p2@DLX6!1.04!9.98!DLX6;;chr9:124976299..124976327,-!p3@LHX6!1.04!9.98!LHX6;;chr19:47922750..47922795,-!p1@MEIS3!1.03!15.97!MEIS3;;chr11:113930425..113930471,+!p1@ZBTB16!1.03!13.97!ZBTB16;;chr16:79634624..79634642,-!p1@MAF!1.02!37.93!MAF;;chr2:74229812..74229867,+!p1@TET3!1.02!23.95!TET3;;chr3:126076242..126076257,-!p1@KLF15!1.02!11.98!KLF15;;chr19:31840130..31840160,-!p2@TSHZ3!1.00!13.97!TSHZ3;;chrX:118739835..118739862,-!p1@NKRF!1.00!9.98!NKRF;;chr1:164528410..164528428,+!p1@PBX1!0.99!67.87!PBX1;;chr20:306177..306211,+!p2@SOX12!0.99!61.88!SOX12;;chr17:38219184..38219195,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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016 | |||
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0006238,UBERON:0010316 | |ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0006238,UBERON:0010316 | ||
|fonse_cell_line= | |fonse_cell_line= | ||
Line 38: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/brain%252c%2520fetal%252c%2520pool1.CNhs11797.10085-102B4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/brain%252c%2520fetal%252c%2520pool1.CNhs11797.10085-102B4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/brain%252c%2520fetal%252c%2520pool1.CNhs11797.10085-102B4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/brain%252c%2520fetal%252c%2520pool1.CNhs11797.10085-102B4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/brain%252c%2520fetal%252c%2520pool1.CNhs11797.10085-102B4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10085-102B4 | |id=FF:10085-102B4 | ||
|is_a=EFO:0002091;;FF:0010085 | |is_a=EFO:0002091;;FF:0010085 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11797 | |||
|library_id_phase_based=2:CNhs11797 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10085 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10085 | |||
|name=brain, fetal, pool1 | |name=brain, fetal, pool1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 46: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11797,LSID820,release009,COMPLETED | |profile_hcage=CNhs11797,LSID820,release009,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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Line 63: | Line 79: | ||
|rna_weight_ug=10 | |rna_weight_ug=10 | ||
|sample_age= | |sample_age= | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
Line 84: | Line 101: | ||
|top_motifs=PRRX1,2:3.95610482654;AHR_ARNT_ARNT2:3.77680727594;MED-1{core}:3.56145725108;EGR1..3:3.46124850847;MZF1:3.44723065212;NKX2-3_NKX2-5:3.26769367908;ZFP161:3.20444606673;TFAP2B:3.10931915151;REST:3.00295503641;SOX2:2.93857957705;NHLH1,2:2.85412819577;POU3F1..4:2.76152717285;MTE{core}:2.75243066235;RFX1:2.70554459517;BREu{core}:2.64457546405;DBP:2.5465968791;FOXM1:2.46429329709;MTF1:2.45801796611;POU5F1:2.44151334796;RREB1:2.43414252673;RORA:2.38505915199;OCT4_SOX2{dimer}:2.31570933684;ATF2:2.30679020141;GTF2I:2.3035171723;POU6F1:2.28919317512;PATZ1:2.2639514878;ZBTB6:2.19720085871;CUX2:2.15864400641;POU1F1:2.09448664256;SOX{8,9,10}:2.07505196093;PRDM1:2.05069559234;PAX6:2.00509978249;TFDP1:1.89669885023;HOX{A4,D4}:1.88908536381;JUN:1.82886994287;MYFfamily:1.82320943388;GCM1,2:1.81668215982;SMAD1..7,9:1.78853176296;LEF1_TCF7_TCF7L1,2:1.76831634318;HIC1:1.76630883149;NANOG:1.76385169826;MAZ:1.75523744214;SOX17:1.75166968858;ZNF423:1.75127510391;CDC5L:1.74934158331;ZIC1..3:1.74451260722;ADNP_IRX_SIX_ZHX:1.73766085771;GTF2A1,2:1.66160410258;LMO2:1.63331119592;FOXL1:1.55599332602;GFI1B:1.52422570087;T:1.49057279666;TGIF1:1.38618690591;GZF1:1.37724696484;ZNF384:1.34777684247;NKX6-1,2:1.34733695262;SOX5:1.33245337094;HMGA1,2:1.29073716101;PAX5:1.1998650529;LHX3,4:1.17216636243;GFI1:1.14920967933;PAX8:1.12633213486;ARID5B:1.10887576554;RFX2..5_RFXANK_RFXAP:1.04200405147;NRF1:1.04167574767;HAND1,2:1.02641277522;ONECUT1,2:1.01917637243;HOXA9_MEIS1:1.00554049968;MAFB:0.99383469704;VSX1,2:0.993367961794;MYOD1:0.946908703029;FOXP1:0.921964069821;IKZF2:0.842105199019;KLF4:0.787417572377;PAX3,7:0.770354024509;RBPJ:0.761885608996;CRX:0.738003963873;TOPORS:0.737057253089;BPTF:0.704690268718;ESRRA:0.682335901555;FOXD3:0.653975266174;GATA4:0.593582162263;ZNF143:0.571851620382;FOXP3:0.544793444097;TBP:0.496469613449;XCPE1{core}:0.479371341479;PAX1,9:0.44099586997;MEF2{A,B,C,D}:0.425994338625;SP1:0.386411498309;PBX1:0.295724632107;NR3C1:0.295491244531;ZNF238:0.24473368837;ATF4:0.230122776129;POU2F1..3:0.224680860151;GATA6:0.219666530527;FOX{D1,D2}:0.210259938408;EP300:0.197015157643;EVI1:0.172834966856;PITX1..3:0.15998414231;EBF1:0.117777697793;AIRE:0.0457282198876;PDX1:0.038277534813;YY1:0.037378242311;FOXQ1:-0.0133448454378;NKX3-2:-0.0292729431849;ZEB1:-0.0386868398021;XBP1:-0.0464487728116;HNF1A:-0.0691298470405;TEF:-0.106745604153;FOXA2:-0.118710199608;ATF5_CREB3:-0.121206665394;STAT1,3:-0.152675483786;FOX{F1,F2,J1}:-0.197840320115;NFY{A,B,C}:-0.259340448228;UFEwm:-0.283772139997;AR:-0.329459435427;PAX2:-0.329476979066;NFIL3:-0.340582938093;NFIX:-0.343731013709;PAX4:-0.346802576034;STAT5{A,B}:-0.356598095368;bHLH_family:-0.378455976563;SNAI1..3:-0.402939188022;CEBPA,B_DDIT3:-0.410802907921;NFATC1..3:-0.438813546512;NR1H4:-0.447698453534;HNF4A_NR2F1,2:-0.456560338668;TLX2:-0.462231911503;ALX1:-0.466102364317;HMX1:-0.485194246407;ZBTB16:-0.510848887296;TFAP2{A,C}:-0.518083624134;MYBL2:-0.534447342978;NFE2L2:-0.538832314156;HOX{A6,A7,B6,B7}:-0.550200627517;STAT2,4,6:-0.562824151399;ZNF148:-0.572598378231;SPIB:-0.593746176418;RUNX1..3:-0.614783847482;SREBF1,2:-0.628546915445;CREB1:-0.640207815181;DMAP1_NCOR{1,2}_SMARC:-0.651648185518;TLX1..3_NFIC{dimer}:-0.664763417396;HOX{A5,B5}:-0.679358656021;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.691585439533;FOSL2:-0.710289625599;HBP1_HMGB_SSRP1_UBTF:-0.720882876828;CDX1,2,4:-0.730763901346;FOS_FOS{B,L1}_JUN{B,D}:-0.759254220749;TEAD1:-0.785185143745;TP53:-0.786230069919;FOX{I1,J2}:-0.802230806331;NKX3-1:-0.805997921343;NANOG{mouse}:-0.816826086218;HES1:-0.817927593293;EN1,2:-0.821002237718;BACH2:-0.822710864246;TFCP2:-0.825369383453;TBX4,5:-0.828822320929;NFKB1_REL_RELA:-0.833250611051;MYB:-0.851878106625;ETS1,2:-0.86609674203;ATF6:-0.878140036422;E2F1..5:-0.926825440992;SPI1:-0.935761442497;IKZF1:-0.944202504883;GLI1..3:-0.983412140346;FOXO1,3,4:-0.988582410801;NFE2:-1.00990027363;TFAP4:-1.02588416172;HLF:-1.08595737291;NR5A1,2:-1.13377269446;PPARG:-1.14213900692;RXR{A,B,G}:-1.16195881523;IRF7:-1.1627455097;SPZ1:-1.16798192162;NKX2-1,4:-1.17130431354;ESR1:-1.17440715593;IRF1,2:-1.22085900684;FOXN1:-1.32045520082;SRF:-1.39206037447;HIF1A:-1.40024752585;ALX4:-1.44522267752;RXRA_VDR{dimer}:-1.44801590919;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.46599041477;NFE2L1:-1.49877186524;TAL1_TCF{3,4,12}:-1.50345720284;ELK1,4_GABP{A,B1}:-1.59487109503;NR6A1:-1.61105175912;HSF1,2:-1.70610297225;NKX2-2,8:-2.20577222179;ELF1,2,4:-2.48153109579 | |top_motifs=PRRX1,2:3.95610482654;AHR_ARNT_ARNT2:3.77680727594;MED-1{core}:3.56145725108;EGR1..3:3.46124850847;MZF1:3.44723065212;NKX2-3_NKX2-5:3.26769367908;ZFP161:3.20444606673;TFAP2B:3.10931915151;REST:3.00295503641;SOX2:2.93857957705;NHLH1,2:2.85412819577;POU3F1..4:2.76152717285;MTE{core}:2.75243066235;RFX1:2.70554459517;BREu{core}:2.64457546405;DBP:2.5465968791;FOXM1:2.46429329709;MTF1:2.45801796611;POU5F1:2.44151334796;RREB1:2.43414252673;RORA:2.38505915199;OCT4_SOX2{dimer}:2.31570933684;ATF2:2.30679020141;GTF2I:2.3035171723;POU6F1:2.28919317512;PATZ1:2.2639514878;ZBTB6:2.19720085871;CUX2:2.15864400641;POU1F1:2.09448664256;SOX{8,9,10}:2.07505196093;PRDM1:2.05069559234;PAX6:2.00509978249;TFDP1:1.89669885023;HOX{A4,D4}:1.88908536381;JUN:1.82886994287;MYFfamily:1.82320943388;GCM1,2:1.81668215982;SMAD1..7,9:1.78853176296;LEF1_TCF7_TCF7L1,2:1.76831634318;HIC1:1.76630883149;NANOG:1.76385169826;MAZ:1.75523744214;SOX17:1.75166968858;ZNF423:1.75127510391;CDC5L:1.74934158331;ZIC1..3:1.74451260722;ADNP_IRX_SIX_ZHX:1.73766085771;GTF2A1,2:1.66160410258;LMO2:1.63331119592;FOXL1:1.55599332602;GFI1B:1.52422570087;T:1.49057279666;TGIF1:1.38618690591;GZF1:1.37724696484;ZNF384:1.34777684247;NKX6-1,2:1.34733695262;SOX5:1.33245337094;HMGA1,2:1.29073716101;PAX5:1.1998650529;LHX3,4:1.17216636243;GFI1:1.14920967933;PAX8:1.12633213486;ARID5B:1.10887576554;RFX2..5_RFXANK_RFXAP:1.04200405147;NRF1:1.04167574767;HAND1,2:1.02641277522;ONECUT1,2:1.01917637243;HOXA9_MEIS1:1.00554049968;MAFB:0.99383469704;VSX1,2:0.993367961794;MYOD1:0.946908703029;FOXP1:0.921964069821;IKZF2:0.842105199019;KLF4:0.787417572377;PAX3,7:0.770354024509;RBPJ:0.761885608996;CRX:0.738003963873;TOPORS:0.737057253089;BPTF:0.704690268718;ESRRA:0.682335901555;FOXD3:0.653975266174;GATA4:0.593582162263;ZNF143:0.571851620382;FOXP3:0.544793444097;TBP:0.496469613449;XCPE1{core}:0.479371341479;PAX1,9:0.44099586997;MEF2{A,B,C,D}:0.425994338625;SP1:0.386411498309;PBX1:0.295724632107;NR3C1:0.295491244531;ZNF238:0.24473368837;ATF4:0.230122776129;POU2F1..3:0.224680860151;GATA6:0.219666530527;FOX{D1,D2}:0.210259938408;EP300:0.197015157643;EVI1:0.172834966856;PITX1..3:0.15998414231;EBF1:0.117777697793;AIRE:0.0457282198876;PDX1:0.038277534813;YY1:0.037378242311;FOXQ1:-0.0133448454378;NKX3-2:-0.0292729431849;ZEB1:-0.0386868398021;XBP1:-0.0464487728116;HNF1A:-0.0691298470405;TEF:-0.106745604153;FOXA2:-0.118710199608;ATF5_CREB3:-0.121206665394;STAT1,3:-0.152675483786;FOX{F1,F2,J1}:-0.197840320115;NFY{A,B,C}:-0.259340448228;UFEwm:-0.283772139997;AR:-0.329459435427;PAX2:-0.329476979066;NFIL3:-0.340582938093;NFIX:-0.343731013709;PAX4:-0.346802576034;STAT5{A,B}:-0.356598095368;bHLH_family:-0.378455976563;SNAI1..3:-0.402939188022;CEBPA,B_DDIT3:-0.410802907921;NFATC1..3:-0.438813546512;NR1H4:-0.447698453534;HNF4A_NR2F1,2:-0.456560338668;TLX2:-0.462231911503;ALX1:-0.466102364317;HMX1:-0.485194246407;ZBTB16:-0.510848887296;TFAP2{A,C}:-0.518083624134;MYBL2:-0.534447342978;NFE2L2:-0.538832314156;HOX{A6,A7,B6,B7}:-0.550200627517;STAT2,4,6:-0.562824151399;ZNF148:-0.572598378231;SPIB:-0.593746176418;RUNX1..3:-0.614783847482;SREBF1,2:-0.628546915445;CREB1:-0.640207815181;DMAP1_NCOR{1,2}_SMARC:-0.651648185518;TLX1..3_NFIC{dimer}:-0.664763417396;HOX{A5,B5}:-0.679358656021;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.691585439533;FOSL2:-0.710289625599;HBP1_HMGB_SSRP1_UBTF:-0.720882876828;CDX1,2,4:-0.730763901346;FOS_FOS{B,L1}_JUN{B,D}:-0.759254220749;TEAD1:-0.785185143745;TP53:-0.786230069919;FOX{I1,J2}:-0.802230806331;NKX3-1:-0.805997921343;NANOG{mouse}:-0.816826086218;HES1:-0.817927593293;EN1,2:-0.821002237718;BACH2:-0.822710864246;TFCP2:-0.825369383453;TBX4,5:-0.828822320929;NFKB1_REL_RELA:-0.833250611051;MYB:-0.851878106625;ETS1,2:-0.86609674203;ATF6:-0.878140036422;E2F1..5:-0.926825440992;SPI1:-0.935761442497;IKZF1:-0.944202504883;GLI1..3:-0.983412140346;FOXO1,3,4:-0.988582410801;NFE2:-1.00990027363;TFAP4:-1.02588416172;HLF:-1.08595737291;NR5A1,2:-1.13377269446;PPARG:-1.14213900692;RXR{A,B,G}:-1.16195881523;IRF7:-1.1627455097;SPZ1:-1.16798192162;NKX2-1,4:-1.17130431354;ESR1:-1.17440715593;IRF1,2:-1.22085900684;FOXN1:-1.32045520082;SRF:-1.39206037447;HIF1A:-1.40024752585;ALX4:-1.44522267752;RXRA_VDR{dimer}:-1.44801590919;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.46599041477;NFE2L1:-1.49877186524;TAL1_TCF{3,4,12}:-1.50345720284;ELK1,4_GABP{A,B1}:-1.59487109503;NR6A1:-1.61105175912;HSF1,2:-1.70610297225;NKX2-2,8:-2.20577222179;ELF1,2,4:-2.48153109579 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10085-102B4;search_select_hide=table117:FF:10085-102B4 | |||
}} | }} |
Latest revision as of 12:21, 3 June 2020
Name: | brain, fetal, pool1 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs11797 |
Sample type: | tissues |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11797
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11797
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.0385 |
10 | 10 | 0.0264 |
100 | 100 | 0.327 |
101 | 101 | 0.991 |
102 | 102 | 0.631 |
103 | 103 | 0.123 |
104 | 104 | 0.174 |
105 | 105 | 0.413 |
106 | 106 | 0.0677 |
107 | 107 | 0.134 |
108 | 108 | 0.804 |
109 | 109 | 8.23403e-4 |
11 | 11 | 0.0278 |
110 | 110 | 0.113 |
111 | 111 | 0.075 |
112 | 112 | 0.356 |
113 | 113 | 0.451 |
114 | 114 | 0.047 |
115 | 115 | 0.85 |
116 | 116 | 0.218 |
117 | 117 | 0.00655 |
118 | 118 | 0.0861 |
119 | 119 | 0.279 |
12 | 12 | 0.796 |
120 | 120 | 0.235 |
121 | 121 | 0.223 |
122 | 122 | 0.68 |
123 | 123 | 0.419 |
124 | 124 | 0.25 |
125 | 125 | 0.526 |
126 | 126 | 0.00179 |
127 | 127 | 0.573 |
128 | 128 | 0.251 |
129 | 129 | 0.72 |
13 | 13 | 7.62631e-4 |
130 | 130 | 0.277 |
131 | 131 | 0.727 |
132 | 132 | 0.562 |
133 | 133 | 0.0101 |
134 | 134 | 0.606 |
135 | 135 | 0.294 |
136 | 136 | 0.00214 |
137 | 137 | 0.607 |
138 | 138 | 0.927 |
139 | 139 | 0.137 |
14 | 14 | 0.818 |
140 | 140 | 0.423 |
141 | 141 | 0.342 |
142 | 142 | 0.435 |
143 | 143 | 0.0442 |
144 | 144 | 0.746 |
145 | 145 | 0.426 |
146 | 146 | 0.758 |
147 | 147 | 0.86 |
148 | 148 | 0.127 |
149 | 149 | 0.199 |
15 | 15 | 0.0492 |
150 | 150 | 0.193 |
151 | 151 | 0.52 |
152 | 152 | 0.0878 |
153 | 153 | 0.619 |
154 | 154 | 0.508 |
155 | 155 | 0.467 |
156 | 156 | 0.865 |
157 | 157 | 0.13 |
158 | 158 | 0.636 |
159 | 159 | 0.971 |
16 | 16 | 0.0223 |
160 | 160 | 0.36 |
161 | 161 | 0.0956 |
162 | 162 | 0.291 |
163 | 163 | 0.82 |
164 | 164 | 0.0145 |
165 | 165 | 0.0372 |
166 | 166 | 0.942 |
167 | 167 | 0.156 |
168 | 168 | 0.277 |
169 | 169 | 0.00656 |
17 | 17 | 0.21 |
18 | 18 | 0.452 |
19 | 19 | 0.147 |
2 | 2 | 0.78 |
20 | 20 | 0.216 |
21 | 21 | 0.103 |
22 | 22 | 0.154 |
23 | 23 | 0.358 |
24 | 24 | 0.0526 |
25 | 25 | 0.372 |
26 | 26 | 0.0102 |
27 | 27 | 0.747 |
28 | 28 | 0.456 |
29 | 29 | 0.00766 |
3 | 3 | 0.0171 |
30 | 30 | 0.735 |
31 | 31 | 0.933 |
32 | 32 | 0.0333 |
33 | 33 | 0.0964 |
34 | 34 | 0.991 |
35 | 35 | 0.659 |
36 | 36 | 0.228 |
37 | 37 | 0.0173 |
38 | 38 | 0.291 |
39 | 39 | 0.258 |
4 | 4 | 0.715 |
40 | 40 | 0.0877 |
41 | 41 | 0.524 |
42 | 42 | 0.163 |
43 | 43 | 0.147 |
44 | 44 | 0.109 |
45 | 45 | 0.86 |
46 | 46 | 0.202 |
47 | 47 | 0.0616 |
48 | 48 | 0.0452 |
49 | 49 | 0.266 |
5 | 5 | 0.21 |
50 | 50 | 0.364 |
51 | 51 | 0.494 |
52 | 52 | 0.495 |
53 | 53 | 0.772 |
54 | 54 | 0.331 |
55 | 55 | 0.205 |
56 | 56 | 0.439 |
57 | 57 | 0.395 |
58 | 58 | 0.181 |
59 | 59 | 0.0968 |
6 | 6 | 0.856 |
60 | 60 | 0.0624 |
61 | 61 | 0.0405 |
62 | 62 | 0.129 |
63 | 63 | 0.155 |
64 | 64 | 0.39 |
65 | 65 | 0.394 |
66 | 66 | 0.459 |
67 | 67 | 0.287 |
68 | 68 | 0.169 |
69 | 69 | 0.866 |
7 | 7 | 0.0322 |
70 | 70 | 0.00577 |
71 | 71 | 0.00653 |
72 | 72 | 0.218 |
73 | 73 | 0.024 |
74 | 74 | 0.495 |
75 | 75 | 0.0227 |
76 | 76 | 0.313 |
77 | 77 | 0.196 |
78 | 78 | 7.02851e-4 |
79 | 79 | 0.357 |
8 | 8 | 0.117 |
80 | 80 | 0.597 |
81 | 81 | 0.648 |
82 | 82 | 0.607 |
83 | 83 | 0.0836 |
84 | 84 | 0.692 |
85 | 85 | 0.273 |
86 | 86 | 0.199 |
87 | 87 | 0.0027 |
88 | 88 | 0.621 |
89 | 89 | 0.247 |
9 | 9 | 0.545 |
90 | 90 | 0.0579 |
91 | 91 | 0.641 |
92 | 92 | 0.541 |
93 | 93 | 0.283 |
94 | 94 | 0.269 |
95 | 95 | 0.00617 |
96 | 96 | 0.657 |
97 | 97 | 0.862 |
98 | 98 | 0.338 |
99 | 99 | 0.945 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11797
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0010085 human brain - fetal sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000955 (brain)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0010085 (human brain - fetal sample)
0000999 (fetal tissue sample)
0000004 (tissue sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006238 (future brain)
UBERON:0010316 (germ layer / neural crest)