FF:10093-102C3: Difference between revisions

Latest revision as of 12:21, 3 June 2020

Name:	salivary gland, adult, pool1
Species:	Human (Homo sapiens)
Library ID:	CNhs11677
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	salivary gland
dev stage	16-60 years old adult
sex	mixed
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Clontech
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	8101369A-13
catalog number	Cat: 636643 Lot: 8101369A-13
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005188

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11677		CAGE		DRX008717		DRR009589

Accession ID Hg19

Library id		BAM		CTSS
CNhs11677		DRZ001014		DRZ002399

Accession ID Hg38

Library id		BAM		CTSS
CNhs11677		DRZ012364		DRZ013749

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.407
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0347
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.0796
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.155
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.15
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	1.418
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0384
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.155
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.579
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.155
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0.36
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0034
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0244
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.606
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.155
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	1.309
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.155
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0.155
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11677

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.212
MA0003.1	MA0003.1	0.222
MA0004.1	MA0004.1	0.558
MA0006.1	MA0006.1	0.194
MA0007.1	MA0007.1	0.561
MA0009.1	MA0009.1	0.0476
MA0014.1	MA0014.1	0.688
MA0017.1	MA0017.1	0.333
MA0018.2	MA0018.2	0.00194
MA0019.1	MA0019.1	0.775
MA0024.1	MA0024.1	6.17612e-4
MA0025.1	MA0025.1	0.835
MA0027.1	MA0027.1	0.376
MA0028.1	MA0028.1	0.0219
MA0029.1	MA0029.1	0.585
MA0030.1	MA0030.1	0.00156
MA0031.1	MA0031.1	0.0984
MA0035.2	MA0035.2	0.898
MA0038.1	MA0038.1	0.734
MA0039.2	MA0039.2	0.024
MA0040.1	MA0040.1	0.529
MA0041.1	MA0041.1	0.813
MA0042.1	MA0042.1	0.288
MA0043.1	MA0043.1	0.0242
MA0046.1	MA0046.1	0.933
MA0047.2	MA0047.2	2.0805e-4
MA0048.1	MA0048.1	2.63977e-5
MA0050.1	MA0050.1	0.0584
MA0051.1	MA0051.1	0.347
MA0052.1	MA0052.1	1.39033e-4
MA0055.1	MA0055.1	0.00425
MA0057.1	MA0057.1	0.444
MA0058.1	MA0058.1	0.253
MA0059.1	MA0059.1	0.233
MA0060.1	MA0060.1	0.0319
MA0061.1	MA0061.1	0.0786
MA0062.2	MA0062.2	0.00925
MA0065.2	MA0065.2	0.821
MA0066.1	MA0066.1	0.16
MA0067.1	MA0067.1	0.00833
MA0068.1	MA0068.1	0.629
MA0069.1	MA0069.1	0.97
MA0070.1	MA0070.1	0.6
MA0071.1	MA0071.1	0.53
MA0072.1	MA0072.1	0.384
MA0073.1	MA0073.1	0.756
MA0074.1	MA0074.1	0.758
MA0076.1	MA0076.1	0.0259
MA0077.1	MA0077.1	0.135
MA0078.1	MA0078.1	0.197
MA0079.2	MA0079.2	0.116
MA0080.2	MA0080.2	0.646
MA0081.1	MA0081.1	0.00468
MA0083.1	MA0083.1	0.633
MA0084.1	MA0084.1	0.652
MA0087.1	MA0087.1	0.149
MA0088.1	MA0088.1	0.403
MA0090.1	MA0090.1	0.61
MA0091.1	MA0091.1	0.293
MA0092.1	MA0092.1	0.605
MA0093.1	MA0093.1	0.555
MA0099.2	MA0099.2	2.83573e-14
MA0100.1	MA0100.1	0.00975
MA0101.1	MA0101.1	0.0182
MA0102.2	MA0102.2	0.0692
MA0103.1	MA0103.1	9.62442e-7
MA0104.2	MA0104.2	0.0826
MA0105.1	MA0105.1	0.00264
MA0106.1	MA0106.1	0.768
MA0107.1	MA0107.1	0.0766
MA0108.2	MA0108.2	5.83093e-7
MA0111.1	MA0111.1	0.576
MA0112.2	MA0112.2	0.0352
MA0113.1	MA0113.1	0.473
MA0114.1	MA0114.1	0.923
MA0115.1	MA0115.1	0.727
MA0116.1	MA0116.1	0.741
MA0117.1	MA0117.1	0.143
MA0119.1	MA0119.1	0.304
MA0122.1	MA0122.1	0.846
MA0124.1	MA0124.1	0.464
MA0125.1	MA0125.1	0.543
MA0131.1	MA0131.1	0.0649
MA0135.1	MA0135.1	0.411
MA0136.1	MA0136.1	0.459
MA0137.2	MA0137.2	0.406
MA0138.2	MA0138.2	0.0246
MA0139.1	MA0139.1	0.457
MA0140.1	MA0140.1	0.321
MA0141.1	MA0141.1	0.0825
MA0142.1	MA0142.1	0.95
MA0143.1	MA0143.1	0.209
MA0144.1	MA0144.1	0.704
MA0145.1	MA0145.1	0.00869
MA0146.1	MA0146.1	0.345
MA0147.1	MA0147.1	0.0598
MA0148.1	MA0148.1	5.36577e-4
MA0149.1	MA0149.1	0.683
MA0150.1	MA0150.1	5.80506e-4
MA0152.1	MA0152.1	0.459
MA0153.1	MA0153.1	0.031
MA0154.1	MA0154.1	0.455
MA0155.1	MA0155.1	0.75
MA0156.1	MA0156.1	0.485
MA0157.1	MA0157.1	0.0608
MA0159.1	MA0159.1	0.299
MA0160.1	MA0160.1	0.129
MA0162.1	MA0162.1	0.738
MA0163.1	MA0163.1	0.00557
MA0164.1	MA0164.1	0.0557
MA0258.1	MA0258.1	0.159
MA0259.1	MA0259.1	0.216

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11677

Novel motif	Logo	P-value
1	1	0.918
10	10	0.0316
100	100	0.759
101	101	0.706
102	102	0.613
103	103	0.745
104	104	0.349
105	105	0.345
106	106	0.874
107	107	0.243
108	108	0.684
109	109	0.989
11	11	0.924
110	110	0.555
111	111	0.534
112	112	0.313
113	113	0.257
114	114	0.914
115	115	0.712
116	116	0.811
117	117	0.125
118	118	0.232
119	119	0.355
12	12	0.598
120	120	0.124
121	121	0.824
122	122	0.262
123	123	0.182
124	124	0.984
125	125	0.442
126	126	0.0825
127	127	0.559
128	128	0.475
129	129	0.755
13	13	0.719
130	130	0.722
131	131	0.664
132	132	0.0507
133	133	0.178
134	134	0.00132
135	135	0.958
136	136	0.682
137	137	0.649
138	138	0.304
139	139	0.645
14	14	0.363
140	140	0.885
141	141	0.912
142	142	0.6
143	143	0.205
144	144	0.0649
145	145	0.202
146	146	0.00639
147	147	0.874
148	148	0.972
149	149	0.0969
15	15	0.804
150	150	0.667
151	151	0.691
152	152	0.37
153	153	0.926
154	154	0.972
155	155	0.868
156	156	0.134
157	157	0.333
158	158	0.774
159	159	0.0585
16	16	0.584
160	160	0.733
161	161	0.958
162	162	0.266
163	163	0.428
164	164	0.123
165	165	0.673
166	166	0.911
167	167	0.0607
168	168	0.202
169	169	0.0433
17	17	0.617
18	18	0.204
19	19	0.254
2	2	0.0153
20	20	0.0526
21	21	0.32
22	22	0.522
23	23	0.368
24	24	0.79
25	25	0.953
26	26	0.875
27	27	0.297
28	28	0.651
29	29	0.649
3	3	0.659
30	30	0.00638
31	31	0.751
32	32	0.814
33	33	0.919
34	34	0.748
35	35	0.587
36	36	0.00705
37	37	0.439
38	38	0.329
39	39	0.363
4	4	0.592
40	40	0.695
41	41	0.186
42	42	0.762
43	43	0.963
44	44	0.725
45	45	0.0929
46	46	0.765
47	47	0.663
48	48	0.959
49	49	0.827
5	5	0.153
50	50	0.637
51	51	0.799
52	52	0.202
53	53	0.516
54	54	0.934
55	55	0.46
56	56	0.601
57	57	0.717
58	58	0.371
59	59	0.414
6	6	0.357
60	60	0.279
61	61	0.954
62	62	0.814
63	63	0.243
64	64	0.927
65	65	0.305
66	66	0.418
67	67	0.676
68	68	0.467
69	69	0.178
7	7	0.489
70	70	0.404
71	71	0.318
72	72	0.77
73	73	0.835
74	74	0.568
75	75	0.341
76	76	0.108
77	77	0.00196
78	78	0.354
79	79	0.113
8	8	0.911
80	80	0.195
81	81	0.334
82	82	0.6
83	83	0.623
84	84	0.56
85	85	0.213
86	86	0.87
87	87	0.887
88	88	0.88
89	89	0.294
9	9	0.698
90	90	0.845
91	91	0.876
92	92	0.192
93	93	0.885
94	94	0.116
95	95	0.0111
96	96	0.532
97	97	0.62
98	98	0.683
99	99	0.354

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11677

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010093 human salivary gland - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0001044 (saliva-secreting gland)
0000033 (head)
0000479 (tissue)
0001007 (digestive system)
0004121 (ectoderm-derived structure)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000466 (immaterial anatomical entity)
0000062 (organ)
0004111 (anatomical conduit)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000161 (orifice)
0001444 (subdivision of head)
0002553 (anatomical cavity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003293 (gland of oral region)
0003294 (gland of foregut)
0002365 (exocrine gland)
0000464 (anatomical space)
0002530 (gland)
0010047 (oral gland)
0003408 (gland of gut)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0001004 (respiratory system)
0000153 (anterior region of body)
0007811 (craniocervical region)
0000165 (mouth)
0001041 (foregut)
0000166 (oral opening)
0000167 (oral cavity)
0002330 (exocrine system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010093 (human salivary gland - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005188
+|accession_numbers=CAGE;DRX008717;DRR009589;DRZ001014;DRZ002399;DRZ012364;DRZ013749
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0001044,UBERON:0000033,UBERON:0000479,UBERON:0001007,UBERON:0004121,UBERON:0004119,UBERON:0011216,UBERON:0000466,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004921,UBERON:0000161,UBERON:0001444,UBERON:0002553,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003293,UBERON:0003294,UBERON:0002365,UBERON:0000464,UBERON:0002530,UBERON:0010047,UBERON:0003408,UBERON:0010317,UBERON:0001555,UBERON:0001004,UBERON:0000153,UBERON:0007811,UBERON:0000165,UBERON:0001041,UBERON:0000166,UBERON:0000167,UBERON:0002330
 |ancestors_in_cell_lineage_facet=
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr11:34642612..34642646,+!p1@EHF!2.68!480.56!EHF;;chr2:122042770..122042785,-!p1@TFCP2L1!2.42!260.72!TFCP2L1;;chr22:38380543..38380569,-!p1@SOX10!2.31!201.35!SOX10;;chr11:34535297..34535317,-!p1@ELF5!2.27!186.72!ELF5;;chr11:129245526..129245553,+!p1@BARX2!2.25!175.10!BARX2;;chr7:97840743..97840786,+!p1@BHLHA15!2.17!147.14!BHLHA15;;chr17:80797886..80797906,-!p1@ZNF750!2.16!144.56!ZNF750;;chr14:37131058..37131139,+!p1@PAX9!2.08!117.88!PAX9;;chr6:34524093..34524135,-!p1@SPDEF!2.05!112.29!SPDEF;;chr6:34524049..34524089,-!p2@SPDEF!2.05!111.43!SPDEF;;chr11:34535332..34535347,-!p2@ELF5!2.02!103.68!ELF5;;chr22:29196433..29196445,-!p4@XBP1!2.01!112.29!XBP1;;chr1:201979743..201979762,+!p1@ELF3!2.00!99.38!ELF3;;chr11:34645791..34645836,+!p3@EHF!1.94!85.62!EHF;;chr7:14028488..14028516,-!p2@ETV1!1.92!90.35!ETV1;;chr6:1312325..1312340,+!p1@FOXQ1!1.82!104.12!FOXQ1;;chr1:151804244..151804310,-!p1@RORC!1.75!54.64!RORC;;chr11:34642656..34642667,+!p2@EHF!1.67!46.03!EHF;;chr22:29196492..29196503,-!p3@XBP1!1.66!67.55!XBP1;;chr14:61116183..61116208,-!p1@SIX1!1.65!161.34!SIX1;;chr2:19558373..19558392,-!p1@OSR1!1.59!99.81!OSR1;;chr12:52445218..52445237,+!p1@NR4A1!1.57!432.38!NR4A1;;chr1:209979467..209979494,-!p1@IRF6!1.56!39.15!IRF6;;chr11:111249993..111250006,-!p1@POU2AF1!1.54!33.56!POU2AF1;;chr5:2751762..2751784,-!p1@IRX2!1.49!29.69!IRX2;;chr1:201979703..201979721,+!p2@ELF3!1.44!26.67!ELF3;;chr5:134369879..134369898,-!p2@PITX1!1.43!25.81!PITX1;;chr20:55204351..55204377,+!p1@TFAP2C!1.41!30.98!TFAP2C;;chr5:134369905..134369972,-!p1@PITX1!1.39!35.71!PITX1;;chr17:53342311..53342400,+!p1@HLF!1.36!24.95!HLF;;chr10:102891048..102891078,+!p1@TLX1!1.34!21.08!TLX1;;chr12:52449834..52449859,+!p16@NR4A1!1.34!21.08!NR4A1;;chr17:38256799..38256815,-!p3@NR1D1!1.33!36.14!NR1D1;;chr6:391743..391759,+!p1@IRF4!1.33!20.22!IRF4;;chr9:129376233..129376251,+!p2@LMX1B!1.33!20.22!LMX1B;;chr1:10754477..10754517,-!p1@CASZ1!1.32!33.13!CASZ1;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.32!19.79!PEG3;;chr6:1610293..1610310,+!p1@FOXC1!1.31!32.27!FOXC1;;chr22:29196547..29196563,-!p2@XBP1!1.30!677.61!XBP1;;chr22:29196030..29196075,-!p5@XBP1!1.29!23.66!XBP1;;chr6:10415276..10415341,-!p2@TFAP2A!1.29!22.37!TFAP2A;;chr1:217251619..217251658,-!p6@ESRRG!1.29!18.50!ESRRG;;chrY:21906594..21906622,-!p1@KDM5D!1.28!18.07!KDM5D;;chr19:13135582..13135600,+!p3@NFIX!1.28!18.07!NFIX;;chr11:129245736..129245758,+!p2@BARX2!1.28!18.07!BARX2;;chr4:149363475..149363492,-!p2@NR3C2!1.28!18.07!NR3C2;;chr6:10412600..10412637,-!p1@TFAP2A!1.27!29.26!TFAP2A;;chr7:14026022..14026044,-!p7@ETV1!1.26!17.21!ETV1;;chr22:41763452..41763466,+!p2@TEF!1.26!17.21!TEF;;chr6:34524025..34524045,-!p3@SPDEF!1.24!16.35!SPDEF;;chr14:37126765..37126799,+!p2@PAX9!1.24!16.35!PAX9;;chr2:157189180..157189290,-!p1@NR4A2!1.21!77.87!NR4A2;;chr4:149363494..149363543,-!p1@NR3C2!1.21!15.06!NR3C2;;chr1:217250308..217250349,-!p9@ESRRG!1.21!15.06!ESRRG;;chr17:38256822..38256851,-!p1@NR1D1!1.20!115.73!NR1D1;;chr11:46299199..46299233,+!p1@CREB3L1!1.20!75.72!CREB3L1;;chr3:126076242..126076257,-!p1@KLF15!1.19!18.07!KLF15;;chr3:114819101..114819121,-!p7@ZBTB20!1.19!14.63!ZBTB20;;chr8:102504651..102504683,+!p1@GRHL2!1.19!14.63!GRHL2;;chr5:2751785..2751808,-!p2@IRX2!1.18!14.20!IRX2;;chr7:14029283..14029311,-!p1@ETV1!1.17!72.28!ETV1;;chr13:37446984..37446995,-!p13@SMAD9!1.17!13.77!SMAD9;;chr9:14180778..14180808,-!p15@NFIB!1.16!13.34!NFIB;;chr2:45236540..45236577,-!p1@SIX2!1.16!13.34!SIX2;;chr17:80797863..80797874,-!p2@ZNF750!1.16!13.34!ZNF750;;chr17:70117153..70117174,+!p1@SOX9!1.15!135.52!SOX9;;chr19:49140609..49140643,-!p1@DBP!1.14!72.71!DBP;;chr1:153940716..153940739,+!p4@CREB3L4!1.14!12.91!CREB3L4;;chr1:61548069..61548102,+!p3@NFIA!1.13!30.12!NFIA;;chr20:62680984..62680999,-!p1@SOX18!1.13!16.78!SOX18;;chr10:8096631..8096660,+!p1@GATA3!1.13!15.06!GATA3;;chr9:129376201..129376225,+!p1@LMX1B!1.13!12.48!LMX1B;;chrX:107018836..107018862,-!p8@TSC22D3!1.12!12.05!TSC22D3;;chr16:85932760..85932775,+!p1@IRF8!1.12!12.05!IRF8;;chr3:114819124..114819200,-!p3@ZBTB20!1.11!27.96!ZBTB20;;chr16:54320646..54320672,-!p2@IRX3!1.11!18.07!IRX3;;chr8:23540441..23540466,-!p1@NKX3-1!1.10!23.23!NKX3-1;;chr13:37494365..37494381,-!p1@SMAD9!1.10!20.22!SMAD9;;chr13:37446840..37446847,-!p15@SMAD9!1.09!11.19!SMAD9;;chr3:114819073..114819100,-!p10@ZBTB20!1.09!11.19!ZBTB20;;chr18:45663490..45663528,-!p2@ZBTB7C!1.07!10.76!ZBTB7C;;chr14:38064429..38064486,-!p1@FOXA1!1.07!10.76!FOXA1;;chr2:66662249..66662267,+!p2@MEIS1!1.06!40.44!MEIS1;;chr18:52989081..52989117,-!p7@TCF4!1.06!16.35!TCF4;;chr3:126076264..126076305,-!p2@KLF15!1.06!14.63!KLF15;;chr10:8096772..8096787,+!p2@GATA3!1.06!12.48!GATA3;;chr9:14314566..14314618,-!p1@NFIB!1.04!120.03!NFIB;;chr16:54320101..54320125,-!p4@IRX3!1.04!14.20!IRX3;;chrX:107018969..107019024,-!p6@TSC22D3!1.04!13.77!TSC22D3;;chr1:217251561..217251581,-!p8@ESRRG!1.04!9.90!ESRRG;;chr16:54320617..54320643,-!p3@IRX3!1.03!12.48!IRX3;;chr11:34535276..34535287,-!p3@ELF5!1.02!9.47!ELF5;;chr12:52450779..5245079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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000161;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000165;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000166;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001044;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001829;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002365
 |ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0006595,UBERON:0010316
 |fonse_cell_line=
@@ Line 38: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/salivary%2520gland%252c%2520adult%252c%2520pool1.CNhs11677.10093-102C3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/salivary%2520gland%252c%2520adult%252c%2520pool1.CNhs11677.10093-102C3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/salivary%2520gland%252c%2520adult%252c%2520pool1.CNhs11677.10093-102C3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/salivary%2520gland%252c%2520adult%252c%2520pool1.CNhs11677.10093-102C3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/salivary%2520gland%252c%2520adult%252c%2520pool1.CNhs11677.10093-102C3.hg38.nobarcode.ctss.bed.gz
 |id=FF:10093-102C3
 |is_a=EFO:0002091;;FF:0010093
 |is_obsolete=
+|library_id=CNhs11677
+|library_id_phase_based=2:CNhs11677
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10093
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10093
 |name=salivary gland, adult, pool1
 |namespace=FANTOM5
@@ Line 46: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11677,LSID808,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=102
 |rna_catalog_number=Cat: 636643 Lot: 8101369A-13
@@ Line 61: / Line 79: @@
 |rna_weight_ug=10
 |sample_age=
+|sample_category=tissues
 |sample_cell_catalog=NA
 |sample_cell_line=
@@ Line 82: / Line 101: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10093-102C3;search_select_hide=table117:FF:10093-102C3
 }}

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FF:10093-102C3: Difference between revisions

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Latest revision as of 12:21, 3 June 2020

	FAQ
	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0