FF:10155-103A2: Difference between revisions

Latest revision as of 12:23, 3 June 2020

Name:	medulla oblongata, adult, donor10252
Species:	Human (Homo sapiens)
Library ID:	CNhs12315
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	medulla oblongata
dev stage	NA
sex	female
age	76
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	Peter Heutink
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005583

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12315		CAGE		DRX008687		DRR009559

Accession ID Hg19

Library id		BAM		CTSS
CNhs12315		DRZ000984		DRZ002369

Accession ID Hg38

Library id		BAM		CTSS
CNhs12315		DRZ012334		DRZ013719

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

HumanCAGEScan Download raw sequence, BAM & CTSS

Library id		3prime-FASTQ		5prime-FASTQ		BAM		CTSS
NCig10027		download		download		download		download

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0.125
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.798
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.302
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0.159
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0.816
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0.346
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.087
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.0457
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.192
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.0457
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0457
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0.0457
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0.087
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0.844
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0.522
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.0457
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.0457
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.259
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.673
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.192
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.0457
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.0413
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0.0457
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0131
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0457
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.803
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0.0457
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.263
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0.346
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.087
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.0457
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0.087
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0.25
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.0562
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0.426
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0861
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0503
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0.55
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.087
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0.125
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0.236
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.549
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0.087
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.507
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.969
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.0457
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.00128
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0.207
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.388
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.0717
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0.276
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0.159
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0.577
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.125
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0.368
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0.087
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12315

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0152
MA0003.1	MA0003.1	0.213
MA0004.1	MA0004.1	0.282
MA0006.1	MA0006.1	0.54
MA0007.1	MA0007.1	0.398
MA0009.1	MA0009.1	0.0915
MA0014.1	MA0014.1	0.688
MA0017.1	MA0017.1	0.00697
MA0018.2	MA0018.2	0.275
MA0019.1	MA0019.1	0.716
MA0024.1	MA0024.1	0.789
MA0025.1	MA0025.1	0.779
MA0027.1	MA0027.1	0.589
MA0028.1	MA0028.1	0.0467
MA0029.1	MA0029.1	0.03
MA0030.1	MA0030.1	0.0105
MA0031.1	MA0031.1	0.136
MA0035.2	MA0035.2	0.00526
MA0038.1	MA0038.1	0.13
MA0039.2	MA0039.2	0.441
MA0040.1	MA0040.1	0.588
MA0041.1	MA0041.1	0.698
MA0042.1	MA0042.1	0.843
MA0043.1	MA0043.1	0.685
MA0046.1	MA0046.1	0.021
MA0047.2	MA0047.2	0.49
MA0048.1	MA0048.1	0.15
MA0050.1	MA0050.1	0.173
MA0051.1	MA0051.1	0.299
MA0052.1	MA0052.1	0.903
MA0055.1	MA0055.1	0.00289
MA0057.1	MA0057.1	0.819
MA0058.1	MA0058.1	0.364
MA0059.1	MA0059.1	0.068
MA0060.1	MA0060.1	0.102
MA0061.1	MA0061.1	0.00283
MA0062.2	MA0062.2	0.00217
MA0065.2	MA0065.2	7.03251e-4
MA0066.1	MA0066.1	0.00728
MA0067.1	MA0067.1	0.997
MA0068.1	MA0068.1	0.99
MA0069.1	MA0069.1	0.689
MA0070.1	MA0070.1	0.404
MA0071.1	MA0071.1	0.0544
MA0072.1	MA0072.1	0.617
MA0073.1	MA0073.1	0.506
MA0074.1	MA0074.1	0.214
MA0076.1	MA0076.1	0.0965
MA0077.1	MA0077.1	0.0465
MA0078.1	MA0078.1	0.868
MA0079.2	MA0079.2	0.569
MA0080.2	MA0080.2	5.41382e-6
MA0081.1	MA0081.1	0.051
MA0083.1	MA0083.1	0.0411
MA0084.1	MA0084.1	0.216
MA0087.1	MA0087.1	0.105
MA0088.1	MA0088.1	0.18
MA0090.1	MA0090.1	0.685
MA0091.1	MA0091.1	0.443
MA0092.1	MA0092.1	0.232
MA0093.1	MA0093.1	0.357
MA0099.2	MA0099.2	7.83788e-20
MA0100.1	MA0100.1	0.668
MA0101.1	MA0101.1	0.00217
MA0102.2	MA0102.2	0.381
MA0103.1	MA0103.1	0.0925
MA0104.2	MA0104.2	0.273
MA0105.1	MA0105.1	3.08246e-5
MA0106.1	MA0106.1	0.0124
MA0107.1	MA0107.1	0.00163
MA0108.2	MA0108.2	0.453
MA0111.1	MA0111.1	0.598
MA0112.2	MA0112.2	5.35386e-4
MA0113.1	MA0113.1	0.963
MA0114.1	MA0114.1	0.0097
MA0115.1	MA0115.1	0.633
MA0116.1	MA0116.1	0.0023
MA0117.1	MA0117.1	0.792
MA0119.1	MA0119.1	0.163
MA0122.1	MA0122.1	0.635
MA0124.1	MA0124.1	0.75
MA0125.1	MA0125.1	0.214
MA0131.1	MA0131.1	0.948
MA0135.1	MA0135.1	0.00612
MA0136.1	MA0136.1	1.7919e-9
MA0137.2	MA0137.2	0.062
MA0138.2	MA0138.2	0.398
MA0139.1	MA0139.1	0.566
MA0140.1	MA0140.1	0.00534
MA0141.1	MA0141.1	0.0062
MA0142.1	MA0142.1	0.291
MA0143.1	MA0143.1	0.0924
MA0144.1	MA0144.1	0.89
MA0145.1	MA0145.1	0.43
MA0146.1	MA0146.1	0.0296
MA0147.1	MA0147.1	0.125
MA0148.1	MA0148.1	0.487
MA0149.1	MA0149.1	0.0157
MA0150.1	MA0150.1	1.18199e-4
MA0152.1	MA0152.1	0.279
MA0153.1	MA0153.1	0.584
MA0154.1	MA0154.1	0.0346
MA0155.1	MA0155.1	0.652
MA0156.1	MA0156.1	2.73633e-6
MA0157.1	MA0157.1	0.826
MA0159.1	MA0159.1	0.0119
MA0160.1	MA0160.1	0.0291
MA0162.1	MA0162.1	0.161
MA0163.1	MA0163.1	9.18354e-9
MA0164.1	MA0164.1	0.542
MA0258.1	MA0258.1	0.0121
MA0259.1	MA0259.1	0.502

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12315

Novel motif	Logo	P-value
1	1	0.038
10	10	0.0378
100	100	0.358
101	101	0.705
102	102	0.96
103	103	0.0502
104	104	0.0961
105	105	0.235
106	106	0.0299
107	107	0.153
108	108	0.789
109	109	0.00392
11	11	0.00798
110	110	0.0525
111	111	0.0547
112	112	0.391
113	113	0.31
114	114	0.0672
115	115	0.897
116	116	0.21
117	117	0.0108
118	118	0.152
119	119	0.23
12	12	0.621
120	120	0.132
121	121	0.718
122	122	0.989
123	123	0.834
124	124	0.283
125	125	0.361
126	126	0.0673
127	127	0.406
128	128	0.211
129	129	0.519
13	13	0.00584
130	130	0.417
131	131	0.0232
132	132	0.427
133	133	0.165
134	134	0.567
135	135	0.272
136	136	0.00496
137	137	0.829
138	138	0.729
139	139	0.0878
14	14	0.97
140	140	0.569
141	141	0.478
142	142	0.963
143	143	0.00847
144	144	0.954
145	145	0.212
146	146	0.694
147	147	0.788
148	148	0.188
149	149	0.107
15	15	0.0452
150	150	0.126
151	151	0.723
152	152	0.126
153	153	0.948
154	154	0.547
155	155	0.477
156	156	0.256
157	157	0.35
158	158	0.248
159	159	0.00729
16	16	0.0429
160	160	0.204
161	161	0.2
162	162	0.785
163	163	0.737
164	164	0.0132
165	165	0.215
166	166	0.722
167	167	0.632
168	168	0.72
169	169	0.0156
17	17	0.0825
18	18	0.0353
19	19	0.336
2	2	0.944
20	20	0.144
21	21	0.0304
22	22	0.311
23	23	0.563
24	24	0.117
25	25	0.565
26	26	7.91909e-4
27	27	0.637
28	28	0.822
29	29	0.00595
3	3	0.05
30	30	0.625
31	31	0.911
32	32	0.0104
33	33	0.084
34	34	0.785
35	35	0.442
36	36	0.169
37	37	0.0506
38	38	0.437
39	39	0.418
4	4	0.632
40	40	0.0783
41	41	0.178
42	42	0.227
43	43	0.124
44	44	0.112
45	45	0.821
46	46	0.0252
47	47	0.0389
48	48	0.0462
49	49	0.246
5	5	0.63
50	50	0.498
51	51	0.282
52	52	0.787
53	53	0.668
54	54	0.407
55	55	0.772
56	56	0.585
57	57	0.261
58	58	0.347
59	59	0.0922
6	6	0.937
60	60	0.117
61	61	0.136
62	62	0.166
63	63	0.24
64	64	0.143
65	65	0.287
66	66	0.0918
67	67	0.328
68	68	0.116
69	69	0.202
7	7	0.119
70	70	0.022
71	71	0.008
72	72	0.46
73	73	0.0472
74	74	0.94
75	75	0.0173
76	76	0.176
77	77	0.297
78	78	4.63738e-4
79	79	0.266
8	8	0.0514
80	80	0.827
81	81	0.499
82	82	0.637
83	83	0.0806
84	84	0.467
85	85	0.318
86	86	0.175
87	87	0.00105
88	88	0.74
89	89	0.158
9	9	0.58
90	90	0.057
91	91	0.552
92	92	0.514
93	93	0.756
94	94	0.101
95	95	0.0257
96	96	0.981
97	97	0.769
98	98	0.152
99	99	0.683

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12315

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0010038 human medulla oblongata - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0001896 (medulla oblongata)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0004733 (segmental subdivision of hindbrain)
0004732 (segmental subdivision of nervous system)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0002298 (brainstem)
0002028 (hindbrain)
0005290 (myelencephalon)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010038 (human medulla oblongata - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
 |DRA_sample_Accession=CAGE@SAMD00005583
-|accession_numbers=CAGE;DRX008687;DRR009559;DRZ000984;DRZ002369
+|HumanCAGEScanFiles=NCig10027;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/medulla%2520oblongata%252c%2520adult%252c%2520donor10252.NCig10027.10155-103A2.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/medulla%2520oblongata%252c%2520adult%252c%2520donor10252.NCig10027.10155-103A2.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/medulla%2520oblongata%252c%2520adult%252c%2520donor10252.NCig10027.10155-103A2.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/medulla%2520oblongata%252c%2520adult%252c%2520donor10252.NCig10027.10155-103A2.hg19.GCTATA.pairs.bed.gz
+|accession_numbers=CAGE;DRX008687;DRR009559;DRZ000984;DRZ002369;DRZ012334;DRZ013719
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001896,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0004733,UBERON:0004732,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0002298,UBERON:0002028,UBERON:0005290
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
@@ Line 9: / Line 10: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!2.48!302.39!TSC22D4;;chr22:38380543..38380569,-!p1@SOX10!2.28!187.69!SOX10;;chr21:34442439..34442455,+!p1@OLIG1!2.18!150.53!OLIG1;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.04!109.60!PEG3;;chr11:61520075..61520136,+!p1@C11orf9!1.97!187.69!C11orf9;;chr3:181429704..181429722,+!p1@SOX2!1.96!90.30!SOX2;;chr8:53322304..53322340,-!p1@ST18!1.92!81.98!ST18;;chr12:26277817..26277863,-!p2@BHLHE41!1.80!82.20!BHLHE41;;chr2:145277882..145277967,-!p3@ZEB2!1.70!82.86!ZEB2;;chr10:134599649..134599653,-!p1@NKX6-2!1.68!46.59!NKX6-2;;chr19:46801639..46801699,+!p1@HIF3A!1.67!46.15!HIF3A;;chr12:26277956..26277980,-!p1@BHLHE41!1.66!154.19!BHLHE41;;chr11:113930425..113930471,+!p1@ZBTB16!1.66!62.79!ZBTB16;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.65!44.15!POU3F3;;chr12:54779511..54779577,-!p5@ZNF385A!1.65!43.48!ZNF385A;;chr3:147127142..147127168,+!p1@ZIC1!1.63!41.49!ZIC1;;chr9:114287433..114287513,+!p1@ZNF483!1.59!94.40!ZNF483;;chr12:106976774..106976788,+!p1@RFX4!1.59!38.05!RFX4;;chr12:106976678..106976708,+!p2@RFX4!1.58!37.38!RFX4;;chr15:42749722..42749739,-!p2@ZFP106!1.55!60.46!ZFP106;;chr10:48355030..48355090,+!p1@ZNF488!1.54!42.60!ZNF488;;chr11:47400078..47400106,-!p1@SPI1!1.54!33.39!SPI1;;chr16:85932760..85932775,+!p1@IRF8!1.53!32.72!IRF8;;chr14:57277178..57277203,-!p1@OTX2!1.53!32.50!OTX2;;chr21:34398234..34398250,+!p1@OLIG2!1.51!31.39!OLIG2;;chr16:1031762..1031781,+!p1@SOX8!1.51!31.28!SOX8;;chr17:74137321..74137337,-!p1@FOXJ1!1.49!30.06!FOXJ1;;chr3:181429741..181429767,+!p2@SOX2!1.49!29.84!SOX2;;chr8:53322347..53322378,-!p2@ST18!1.46!27.95!ST18;;chr1:61548069..61548102,+!p3@NFIA!1.43!61.23!NFIA;;chr3:126076242..126076257,-!p1@KLF15!1.43!32.28!KLF15;;chr21:34442540..34442560,+!p2@OLIG1!1.41!24.85!OLIG1;;chr1:214161272..214161322,+!p1@PROX1!1.40!33.83!PROX1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.37!22.52!ZBED1;;chr4:81118647..81118666,+!p1@PRDM8!1.36!28.84!PRDM8;;chr3:147127177..147127194,+!p2@ZIC1!1.35!21.30!ZIC1;;chr11:31832658..31832681,-!p1@PAX6!1.34!20.85!PAX6;;chr15:80696703..80696754,+!p1@ARNT2!1.32!26.51!ARNT2;;chr19:13135386..13135435,+!p4@NFIX!1.31!19.41!NFIX;;chr14:33403881..33403924,+!p1@NPAS3!1.30!18.75!NPAS3;;chr4:57547454..57547469,-!p1@HOPX!1.30!18.75!HOPX;;chr17:37764128..37764258,-!p1@NEUROD2!1.29!18.41!NEUROD2;;chr6:19837592..19837621,+!p1@ID4!1.27!106.05!ID4;;chr11:31832862..31832884,-!p2@PAX6!1.27!17.75!PAX6;;chr19:46800289..46800327,+!p2@HIF3A!1.27!17.75!HIF3A;;chr7:63505799..63505904,+!p1@ZNF727!1.27!17.53!ZNF727;;chr17:70117153..70117174,+!p1@SOX9!1.26!171.39!SOX9;;chr16:79634624..79634642,-!p1@MAF!1.25!64.89!MAF;;chr7:115670804..115670825,-!p1@TFEC!1.25!16.64!TFEC;;chr12:26277929..26277955,-!p3@BHLHE41!1.24!23.07!BHLHE41;;chr6:28321971..28321995,-!p1@ZNF323!1.23!15.97!ZNF323;;chr2:166326200..166326216,+!p1@CSRNP3!1.22!22.85!CSRNP3;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.22!15.64!POU3F3;;chr20:50159198..50159299,-!p1@NFATC2!1.21!22.41!NFATC2;;chr13:100634031..100634045,+!p1@ZIC2!1.21!15.31!ZIC2;;chr11:113930291..113930339,+!p2@ZBTB16!1.20!24.40!ZBTB16;;chr16:51185172..51185197,-!p1@SALL1!1.19!14.64!SALL1;;chr3:114819124..114819200,-!p3@ZBTB20!1.18!32.72!ZBTB20;;chr19:13135582..13135600,+!p3@NFIX!1.18!14.09!NFIX;;chr14:73360799..73360817,-!p1@DPF3!1.17!47.92!DPF3;;chr17:7492684..7492778,-!p2@SOX15!1.17!29.29!SOX15;;chr3:187463179..187463201,-!p2@BCL6!1.16!55.02!BCL6;;chr14:33408072..33408114,+!p2@NPAS3!1.15!15.42!NPAS3;;chr1:40105299..40105326,-!p1@HEYL!1.15!12.98!HEYL;;chr14:33403648..33403710,+!p3@NPAS3!1.14!12.76!NPAS3;;chr17:53342311..53342400,+!p1@HLF!1.13!14.42!HLF;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.13!12.42!SMARCE1;;chr22:41763452..41763466,+!p2@TEF!1.12!12.20!TEF;;chr3:114343039..114343085,-!p8@ZBTB20!1.12!12.20!ZBTB20;;chr2:182545234..182545252,-!p1@NEUROD1!1.12!12.09!NEUROD1;;chr3:114343768..114343822,-!p1@ZBTB20!1.11!51.58!ZBTB20;;chr3:126076264..126076305,-!p2@KLF15!1.11!16.75!KLF15;;chr11:8102846..8102892,+!p1@TUB!1.11!16.53!TUB;;chr11:113930401..113930422,+!p3@ZBTB16!1.11!11.87!ZBTB16;;chr2:68592406..68592424,+!p1@PLEK!1.11!11.76!PLEK;;chr16:51185318..51185348,-!p2@SALL1!1.10!11.65!SALL1;;chr11:125034640..125034655,+!p1@PKNOX2!1.09!11.43!PKNOX2;;chr2:95963052..95963106,+!p1@KCNIP3!1.09!11.31!KCNIP3;;chr21:39870339..39870443,-!p1@ERG!1.09!11.20!ERG;;chr9:77112244..77112262,+!p1@RORB!1.08!12.42!RORB;;chr5:71803177..71803255,-!p1@ZNF366!1.08!11.09!ZNF366;;chr13:72441315..72441454,-!p1@DACH1!1.07!21.52!DACH1;;chr11:47400062..47400077,-!p2@SPI1!1.07!10.87!SPI1;;chr2:223163706..223163730,-!p1@PAX3!1.07!10.87!PAX3;;chr12:54778471..54778528,-!p1@ZNF385A!1.07!10.76!ZNF385A;;chr19:30863271..30863338,+!p1@ZNF536!1.07!10.76!ZNF536;;chr19:38085768..38085821,+!p1@ZNF540!1.06!15.86!ZNF540;;chr8:30890810..30890880,-!p1@PURG!1.06!10.54!PURG;;chr2:214016314..214016343,-!p2@IKZF2!1.05!17.53!IKZF2;;chr12:103351444..103351461,+!p1@ASCL1!1.05!10.21!ASCL1;;chr1:244214577..2442145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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001896;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002028;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002298
 |ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316
 |fonse_cell_line=
@@ Line 41: / Line 43: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/medulla%2520oblongata%252c%2520adult%252c%2520donor10252.CNhs12315.10155-103A2.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/medulla%2520oblongata%252c%2520adult%252c%2520donor10252.CNhs12315.10155-103A2.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/medulla%2520oblongata%252c%2520adult%252c%2520donor10252.CNhs12315.10155-103A2.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/medulla%2520oblongata%252c%2520adult%252c%2520donor10252.CNhs12315.10155-103A2.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/medulla%2520oblongata%252c%2520adult%252c%2520donor10252.CNhs12315.10155-103A2.hg38.nobarcode.ctss.bed.gz
 |id=FF:10155-103A2
 |is_a=EFO:0002091;;FF:0000002;;FF:0010038
 |is_obsolete=
 |library_id=CNhs12315
-|library_id_phase_based=1:CNhs12315
+|library_id_phase_based=2:CNhs12315
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10155
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10155
 |name=medulla oblongata, adult, donor10252
 |namespace=FANTOM5
@@ Line 51: / Line 62: @@
 |profile_cagescan=NCig10027,,,
 |profile_hcage=CNhs12315,LSID913,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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@@ Line 90: / Line 102: @@
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10155-103A2;search_select_hide=table117:FF:10155-103A2
 }}

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FF:10155-103A2: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 12:23, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0