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|DRA_sample_Accession=CAGE@SAMD00005583
|DRA_sample_Accession=CAGE@SAMD00005583
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|HumanCAGEScanFiles=NCig10027;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/medulla%2520oblongata%252c%2520adult%252c%2520donor10252.NCig10027.10155-103A2.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/medulla%2520oblongata%252c%2520adult%252c%2520donor10252.NCig10027.10155-103A2.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/medulla%2520oblongata%252c%2520adult%252c%2520donor10252.NCig10027.10155-103A2.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/medulla%2520oblongata%252c%2520adult%252c%2520donor10252.NCig10027.10155-103A2.hg19.GCTATA.pairs.bed.gz
|accession_numbers=CAGE;DRX008687;DRR009559;DRZ000984;DRZ002369
|accession_numbers=CAGE;DRX008687;DRR009559;DRZ000984;DRZ002369;DRZ012334;DRZ013719
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|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
Line 64: Line 64:
|profile_rnaseq=
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|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 102: Line 102:
|top_motifs=RFX2..5_RFXANK_RFXAP:3.35402022597;SOX5:3.13888673658;SOX2:3.13212463086;RFX1:2.98752516276;NKX3-2:2.93277337547;NFIX:2.88309955897;GATA4:2.81923920462;SOX{8,9,10}:2.64591443658;MYFfamily:2.58886456632;REST:2.54068302456;ZFP161:2.4547490586;PRDM1:2.41299572181;MTF1:2.38653085873;GTF2I:2.27765027001;PATZ1:2.24345534541;RREB1:2.21233386405;NHLH1,2:2.19530005357;EP300:2.19186639516;MED-1{core}:2.17221346442;BPTF:2.11263123415;CUX2:2.11119136634;NR3C1:2.08952561401;FOXO1,3,4:2.04821422956;DBP:1.98520810236;OCT4_SOX2{dimer}:1.95525512771;ATF2:1.92453186429;MTE{core}:1.91220363692;HIC1:1.8786165105;MZF1:1.85678521983;TFAP2B:1.85380102087;PRRX1,2:1.84943131323;MYBL2:1.83280861871;PAX6:1.81830336384;TGIF1:1.79842304767;KLF4:1.79021096483;SP1:1.78133810983;LMO2:1.78104235995;FOXD3:1.76609399269;POU6F1:1.74822726227;MAZ:1.73993039868;EBF1:1.73478858309;AR:1.72227200893;FOX{D1,D2}:1.69409036707;ZBTB6:1.68417338001;POU5F1:1.57505967332;SOX17:1.55620496409;HOX{A6,A7,B6,B7}:1.51508661651;SMAD1..7,9:1.50248919595;GCM1,2:1.49887464484;HSF1,2:1.47614470466;HBP1_HMGB_SSRP1_UBTF:1.45197533471;GFI1B:1.44900170064;EGR1..3:1.44594571578;ZNF423:1.44160428153;FOXP1:1.44155082554;RBPJ:1.40435419287;NANOG:1.32404666189;SREBF1,2:1.31530909159;FOXP3:1.27975813052;ZIC1..3:1.25644638218;STAT1,3:1.25440474623;XBP1:1.24433593492;TLX1..3_NFIC{dimer}:1.23608905276;FOXQ1:1.23574965802;TFAP2{A,C}:1.21720241122;PAX5:1.21490299821;CRX:1.20722992434;NRF1:1.16007553188;FOXM1:1.13814773191;BREu{core}:1.06143692819;STAT2,4,6:1.05474969005;ZNF384:1.04482526065;JUN:1.04303446169;T:1.03991791917;POU3F1..4:1.02265161237;VSX1,2:0.99267068055;GTF2A1,2:0.940916588042;IKZF2:0.920605209467;TOPORS:0.915580670136;FOX{F1,F2,J1}:0.910669292939;PAX4:0.897849676367;TLX2:0.800649640514;LEF1_TCF7_TCF7L1,2:0.796302431587;HOX{A4,D4}:0.794503201979;CDC5L:0.767666044623;MYOD1:0.750176074616;AHR_ARNT_ARNT2:0.743132535908;ZNF143:0.72817083699;MAFB:0.697402963726;FOX{I1,J2}:0.693999243684;IRF7:0.68636474047;ONECUT1,2:0.676424231095;ARID5B:0.655485612511;PDX1:0.610865307001;FOXA2:0.59443088257;NFIL3:0.56414788795;SPZ1:0.563637831886;GFI1:0.548731336322;HMX1:0.537795345359;NFY{A,B,C}:0.530025732621;ZBTB16:0.522389845184;RORA:0.519631782416;HOXA9_MEIS1:0.503325904017;XCPE1{core}:0.478668041201;HMGA1,2:0.477442373387;NFATC1..3:0.466418078041;FOXN1:0.454909392718;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.436702454999;HAND1,2:0.41800978792;TFCP2:0.407012120389;CREB1:0.401208649922;NKX2-3_NKX2-5:0.397940398845;TFDP1:0.384180146972;ADNP_IRX_SIX_ZHX:0.305666786568;NKX6-1,2:0.271491784627;IRF1,2:0.268385951912;PAX2:0.262413061103;ZEB1:0.230471617704;GZF1:0.166531722714;MEF2{A,B,C,D}:0.158493298725;PITX1..3:0.139719266783;ESRRA:0.0337341105176;IKZF1:0.0310698133129;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0229225658633;ATF5_CREB3:-0.0700498726834;LHX3,4:-0.0885970791624;ZNF238:-0.130710912295;ATF6:-0.138780268954;ALX1:-0.204358590275;ATF4:-0.231768436559;TFAP4:-0.245346455289;UFEwm:-0.287947911677;NR5A1,2:-0.292356858384;NFE2L2:-0.297280351723;PBX1:-0.302644486708;AIRE:-0.315336814483;SPI1:-0.320643664473;EVI1:-0.32706315803;SNAI1..3:-0.342636632586;TBP:-0.362198605016;NR6A1:-0.365946567502;ETS1,2:-0.37297203246;TEAD1:-0.404710787137;SPIB:-0.405401938354;HNF4A_NR2F1,2:-0.433012113464;NKX3-1:-0.435160446902;POU1F1:-0.444004854696;NR1H4:-0.459066647859;YY1:-0.467168369891;TP53:-0.48649427147;DMAP1_NCOR{1,2}_SMARC:-0.487969878719;ALX4:-0.541194848749;bHLH_family:-0.549179700996;TEF:-0.554068179455;CEBPA,B_DDIT3:-0.578238077955;NANOG{mouse}:-0.594666481535;GATA6:-0.618631607086;CDX1,2,4:-0.622680661561;NFE2:-0.627526839546;HNF1A:-0.691438309509;PAX8:-0.732883014008;RXR{A,B,G}:-0.842163261764;NFE2L1:-0.863446249334;FOXL1:-0.867813192388;NKX2-1,4:-0.893436374764;ELF1,2,4:-0.900293114999;PAX3,7:-0.921335681641;TBX4,5:-0.929472827882;TAL1_TCF{3,4,12}:-0.935527316007;HLF:-0.940424173307;SRF:-0.995372261166;NKX2-2,8:-1.00973512154;HIF1A:-1.01589202832;NFKB1_REL_RELA:-1.04993058292;E2F1..5:-1.07147417239;FOSL2:-1.09201967005;ELK1,4_GABP{A,B1}:-1.125987631;BACH2:-1.13460835531;ZNF148:-1.14237610639;RUNX1..3:-1.21527623942;FOS_FOS{B,L1}_JUN{B,D}:-1.23758033697;ESR1:-1.28709816006;GLI1..3:-1.35137271911;MYB:-1.37962858146;PAX1,9:-1.40533423911;POU2F1..3:-1.42244338203;RXRA_VDR{dimer}:-1.57482349057;HES1:-1.89183663049;PPARG:-2.0034618884;EN1,2:-2.08093201318;STAT5{A,B}:-2.13163487397;HOX{A5,B5}:-2.62189017899
|top_motifs=RFX2..5_RFXANK_RFXAP:3.35402022597;SOX5:3.13888673658;SOX2:3.13212463086;RFX1:2.98752516276;NKX3-2:2.93277337547;NFIX:2.88309955897;GATA4:2.81923920462;SOX{8,9,10}:2.64591443658;MYFfamily:2.58886456632;REST:2.54068302456;ZFP161:2.4547490586;PRDM1:2.41299572181;MTF1:2.38653085873;GTF2I:2.27765027001;PATZ1:2.24345534541;RREB1:2.21233386405;NHLH1,2:2.19530005357;EP300:2.19186639516;MED-1{core}:2.17221346442;BPTF:2.11263123415;CUX2:2.11119136634;NR3C1:2.08952561401;FOXO1,3,4:2.04821422956;DBP:1.98520810236;OCT4_SOX2{dimer}:1.95525512771;ATF2:1.92453186429;MTE{core}:1.91220363692;HIC1:1.8786165105;MZF1:1.85678521983;TFAP2B:1.85380102087;PRRX1,2:1.84943131323;MYBL2:1.83280861871;PAX6:1.81830336384;TGIF1:1.79842304767;KLF4:1.79021096483;SP1:1.78133810983;LMO2:1.78104235995;FOXD3:1.76609399269;POU6F1:1.74822726227;MAZ:1.73993039868;EBF1:1.73478858309;AR:1.72227200893;FOX{D1,D2}:1.69409036707;ZBTB6:1.68417338001;POU5F1:1.57505967332;SOX17:1.55620496409;HOX{A6,A7,B6,B7}:1.51508661651;SMAD1..7,9:1.50248919595;GCM1,2:1.49887464484;HSF1,2:1.47614470466;HBP1_HMGB_SSRP1_UBTF:1.45197533471;GFI1B:1.44900170064;EGR1..3:1.44594571578;ZNF423:1.44160428153;FOXP1:1.44155082554;RBPJ:1.40435419287;NANOG:1.32404666189;SREBF1,2:1.31530909159;FOXP3:1.27975813052;ZIC1..3:1.25644638218;STAT1,3:1.25440474623;XBP1:1.24433593492;TLX1..3_NFIC{dimer}:1.23608905276;FOXQ1:1.23574965802;TFAP2{A,C}:1.21720241122;PAX5:1.21490299821;CRX:1.20722992434;NRF1:1.16007553188;FOXM1:1.13814773191;BREu{core}:1.06143692819;STAT2,4,6:1.05474969005;ZNF384:1.04482526065;JUN:1.04303446169;T:1.03991791917;POU3F1..4:1.02265161237;VSX1,2:0.99267068055;GTF2A1,2:0.940916588042;IKZF2:0.920605209467;TOPORS:0.915580670136;FOX{F1,F2,J1}:0.910669292939;PAX4:0.897849676367;TLX2:0.800649640514;LEF1_TCF7_TCF7L1,2:0.796302431587;HOX{A4,D4}:0.794503201979;CDC5L:0.767666044623;MYOD1:0.750176074616;AHR_ARNT_ARNT2:0.743132535908;ZNF143:0.72817083699;MAFB:0.697402963726;FOX{I1,J2}:0.693999243684;IRF7:0.68636474047;ONECUT1,2:0.676424231095;ARID5B:0.655485612511;PDX1:0.610865307001;FOXA2:0.59443088257;NFIL3:0.56414788795;SPZ1:0.563637831886;GFI1:0.548731336322;HMX1:0.537795345359;NFY{A,B,C}:0.530025732621;ZBTB16:0.522389845184;RORA:0.519631782416;HOXA9_MEIS1:0.503325904017;XCPE1{core}:0.478668041201;HMGA1,2:0.477442373387;NFATC1..3:0.466418078041;FOXN1:0.454909392718;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.436702454999;HAND1,2:0.41800978792;TFCP2:0.407012120389;CREB1:0.401208649922;NKX2-3_NKX2-5:0.397940398845;TFDP1:0.384180146972;ADNP_IRX_SIX_ZHX:0.305666786568;NKX6-1,2:0.271491784627;IRF1,2:0.268385951912;PAX2:0.262413061103;ZEB1:0.230471617704;GZF1:0.166531722714;MEF2{A,B,C,D}:0.158493298725;PITX1..3:0.139719266783;ESRRA:0.0337341105176;IKZF1:0.0310698133129;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0229225658633;ATF5_CREB3:-0.0700498726834;LHX3,4:-0.0885970791624;ZNF238:-0.130710912295;ATF6:-0.138780268954;ALX1:-0.204358590275;ATF4:-0.231768436559;TFAP4:-0.245346455289;UFEwm:-0.287947911677;NR5A1,2:-0.292356858384;NFE2L2:-0.297280351723;PBX1:-0.302644486708;AIRE:-0.315336814483;SPI1:-0.320643664473;EVI1:-0.32706315803;SNAI1..3:-0.342636632586;TBP:-0.362198605016;NR6A1:-0.365946567502;ETS1,2:-0.37297203246;TEAD1:-0.404710787137;SPIB:-0.405401938354;HNF4A_NR2F1,2:-0.433012113464;NKX3-1:-0.435160446902;POU1F1:-0.444004854696;NR1H4:-0.459066647859;YY1:-0.467168369891;TP53:-0.48649427147;DMAP1_NCOR{1,2}_SMARC:-0.487969878719;ALX4:-0.541194848749;bHLH_family:-0.549179700996;TEF:-0.554068179455;CEBPA,B_DDIT3:-0.578238077955;NANOG{mouse}:-0.594666481535;GATA6:-0.618631607086;CDX1,2,4:-0.622680661561;NFE2:-0.627526839546;HNF1A:-0.691438309509;PAX8:-0.732883014008;RXR{A,B,G}:-0.842163261764;NFE2L1:-0.863446249334;FOXL1:-0.867813192388;NKX2-1,4:-0.893436374764;ELF1,2,4:-0.900293114999;PAX3,7:-0.921335681641;TBX4,5:-0.929472827882;TAL1_TCF{3,4,12}:-0.935527316007;HLF:-0.940424173307;SRF:-0.995372261166;NKX2-2,8:-1.00973512154;HIF1A:-1.01589202832;NFKB1_REL_RELA:-1.04993058292;E2F1..5:-1.07147417239;FOSL2:-1.09201967005;ELK1,4_GABP{A,B1}:-1.125987631;BACH2:-1.13460835531;ZNF148:-1.14237610639;RUNX1..3:-1.21527623942;FOS_FOS{B,L1}_JUN{B,D}:-1.23758033697;ESR1:-1.28709816006;GLI1..3:-1.35137271911;MYB:-1.37962858146;PAX1,9:-1.40533423911;POU2F1..3:-1.42244338203;RXRA_VDR{dimer}:-1.57482349057;HES1:-1.89183663049;PPARG:-2.0034618884;EN1,2:-2.08093201318;STAT5{A,B}:-2.13163487397;HOX{A5,B5}:-2.62189017899
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10155-103A2;search_select_hide=table117:FF:10155-103A2
}}
}}

Latest revision as of 12:23, 3 June 2020

Name:medulla oblongata, adult, donor10252
Species:Human (Homo sapiens)
Library ID:CNhs12315
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuemedulla oblongata
dev stageNA
sexfemale
age76
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationPeter Heutink
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005583
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12315 CAGE DRX008687 DRR009559
Accession ID Hg19

Library idBAMCTSS
CNhs12315 DRZ000984 DRZ002369
Accession ID Hg38

Library idBAMCTSS
CNhs12315 DRZ012334 DRZ013719
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload
HumanCAGEScan Download raw sequence, BAM & CTSS

Library id3prime-FASTQ5prime-FASTQBAMCTSS
NCig10027downloaddownloaddownloaddownload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0.125
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.798
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.302
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0.159
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0.816
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0.346
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.087
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40.0457
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.192
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0.0457
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0457
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0.0457
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0.087
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0.844
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0.522
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.0457
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.0457
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.259
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.673
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.192
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.0457
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.0413
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0.0457
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0131
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0457
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.803
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0.0457
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.263
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0.346
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.087
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.0457
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0.087
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0.25
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.0562
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0.426
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0861
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0503
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0.55
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.087
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0.125
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0.236
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.549
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0.087
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.507
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.969
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.0457
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.00128
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0.207
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.388
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.0717
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0.276
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0.159
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0.577
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.125
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0.368
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0.087
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12315

Jaspar motifP-value
MA0002.20.0152
MA0003.10.213
MA0004.10.282
MA0006.10.54
MA0007.10.398
MA0009.10.0915
MA0014.10.688
MA0017.10.00697
MA0018.20.275
MA0019.10.716
MA0024.10.789
MA0025.10.779
MA0027.10.589
MA0028.10.0467
MA0029.10.03
MA0030.10.0105
MA0031.10.136
MA0035.20.00526
MA0038.10.13
MA0039.20.441
MA0040.10.588
MA0041.10.698
MA0042.10.843
MA0043.10.685
MA0046.10.021
MA0047.20.49
MA0048.10.15
MA0050.10.173
MA0051.10.299
MA0052.10.903
MA0055.10.00289
MA0057.10.819
MA0058.10.364
MA0059.10.068
MA0060.10.102
MA0061.10.00283
MA0062.20.00217
MA0065.27.03251e-4
MA0066.10.00728
MA0067.10.997
MA0068.10.99
MA0069.10.689
MA0070.10.404
MA0071.10.0544
MA0072.10.617
MA0073.10.506
MA0074.10.214
MA0076.10.0965
MA0077.10.0465
MA0078.10.868
MA0079.20.569
MA0080.25.41382e-6
MA0081.10.051
MA0083.10.0411
MA0084.10.216
MA0087.10.105
MA0088.10.18
MA0090.10.685
MA0091.10.443
MA0092.10.232
MA0093.10.357
MA0099.27.83788e-20
MA0100.10.668
MA0101.10.00217
MA0102.20.381
MA0103.10.0925
MA0104.20.273
MA0105.13.08246e-5
MA0106.10.0124
MA0107.10.00163
MA0108.20.453
MA0111.10.598
MA0112.25.35386e-4
MA0113.10.963
MA0114.10.0097
MA0115.10.633
MA0116.10.0023
MA0117.10.792
MA0119.10.163
MA0122.10.635
MA0124.10.75
MA0125.10.214
MA0131.10.948
MA0135.10.00612
MA0136.11.7919e-9
MA0137.20.062
MA0138.20.398
MA0139.10.566
MA0140.10.00534
MA0141.10.0062
MA0142.10.291
MA0143.10.0924
MA0144.10.89
MA0145.10.43
MA0146.10.0296
MA0147.10.125
MA0148.10.487
MA0149.10.0157
MA0150.11.18199e-4
MA0152.10.279
MA0153.10.584
MA0154.10.0346
MA0155.10.652
MA0156.12.73633e-6
MA0157.10.826
MA0159.10.0119
MA0160.10.0291
MA0162.10.161
MA0163.19.18354e-9
MA0164.10.542
MA0258.10.0121
MA0259.10.502



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12315

Novel motifP-value
10.038
100.0378
1000.358
1010.705
1020.96
1030.0502
1040.0961
1050.235
1060.0299
1070.153
1080.789
1090.00392
110.00798
1100.0525
1110.0547
1120.391
1130.31
1140.0672
1150.897
1160.21
1170.0108
1180.152
1190.23
120.621
1200.132
1210.718
1220.989
1230.834
1240.283
1250.361
1260.0673
1270.406
1280.211
1290.519
130.00584
1300.417
1310.0232
1320.427
1330.165
1340.567
1350.272
1360.00496
1370.829
1380.729
1390.0878
140.97
1400.569
1410.478
1420.963
1430.00847
1440.954
1450.212
1460.694
1470.788
1480.188
1490.107
150.0452
1500.126
1510.723
1520.126
1530.948
1540.547
1550.477
1560.256
1570.35
1580.248
1590.00729
160.0429
1600.204
1610.2
1620.785
1630.737
1640.0132
1650.215
1660.722
1670.632
1680.72
1690.0156
170.0825
180.0353
190.336
20.944
200.144
210.0304
220.311
230.563
240.117
250.565
267.91909e-4
270.637
280.822
290.00595
30.05
300.625
310.911
320.0104
330.084
340.785
350.442
360.169
370.0506
380.437
390.418
40.632
400.0783
410.178
420.227
430.124
440.112
450.821
460.0252
470.0389
480.0462
490.246
50.63
500.498
510.282
520.787
530.668
540.407
550.772
560.585
570.261
580.347
590.0922
60.937
600.117
610.136
620.166
630.24
640.143
650.287
660.0918
670.328
680.116
690.202
70.119
700.022
710.008
720.46
730.0472
740.94
750.0173
760.176
770.297
784.63738e-4
790.266
80.0514
800.827
810.499
820.637
830.0806
840.467
850.318
860.175
870.00105
880.74
890.158
90.58
900.057
910.552
920.514
930.756
940.101
950.0257
960.981
970.769
980.152
990.683



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12315


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0001896 (medulla oblongata)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0004733 (segmental subdivision of hindbrain)
0004732 (segmental subdivision of nervous system)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0002298 (brainstem)
0002028 (hindbrain)
0005290 (myelencephalon)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010038 (human medulla oblongata - adult sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)

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