FF:10162-103A9: Difference between revisions
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{{f5samples | {{f5samples | ||
| | |DRA_sample_Accession=CAGE@SAMD00005416 | ||
|ancestors_in_cell_lineage_facet= | |DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005416!sRNA-Seq@SAMD00005416 | ||
|HumanCAGEScanFiles=NCig10033;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/pituitary%2520gland%252c%2520adult%252c%2520donor10252.NCig10033.10162-103A9.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/pituitary%2520gland%252c%2520adult%252c%2520donor10252.NCig10033.10162-103A9.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/pituitary%2520gland%252c%2520adult%252c%2520donor10252.NCig10033.10162-103A9.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/pituitary%2520gland%252c%2520adult%252c%2520donor10252.NCig10033.10162-103A9.hg19.GCTATA.pairs.bed.gz | |||
|accession_numbers=CAGE;DRX008709;DRR009581;DRZ001006;DRZ002391;DRZ012356;DRZ013741 | |||
|accession_numbers_RNASeq=RNA-Seq;DRX057155;DRR062914;DRZ007990!sRNA-Seq;DRX037341;DRR041707;DRZ007349 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0000007,UBERON:0001894,UBERON:0000479,UBERON:0004121,UBERON:0003296,UBERON:0010133,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002368,UBERON:0002616,UBERON:0002780,UBERON:0002530,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001890,UBERON:0000949 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010162 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 45: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/pituitary%2520gland%252c%2520adult%252c%2520donor10252.CNhs12229.10162-103A9.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/pituitary%2520gland%252c%2520adult%252c%2520donor10252.CNhs12229.10162-103A9.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/pituitary%2520gland%252c%2520adult%252c%2520donor10252.CNhs12229.10162-103A9.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/pituitary%2520gland%252c%2520adult%252c%2520donor10252.CNhs12229.10162-103A9.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/pituitary%2520gland%252c%2520adult%252c%2520donor10252.CNhs12229.10162-103A9.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10162-103A9 | |id=FF:10162-103A9 | ||
|is_a=EFO:0002091;;FF:0000002;;FF: | |is_a=EFO:0002091;;FF:0000002;;FF:0010162 | ||
|is_obsolete= | |||
|library_id=CNhs12229 | |||
|library_id_phase_based=2:CNhs12229 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10162 | |||
|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10007.ACTTGA.10162 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10162 | |||
|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10007.ACTTGA.10162 | |||
|name=pituitary gland, adult, donor10252 | |name=pituitary gland, adult, donor10252 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 66: | ||
|profile_cagescan=NCig10033,,, | |profile_cagescan=NCig10033,,, | ||
|profile_hcage=CNhs12229,LSID852,release009,COMPLETED | |profile_hcage=CNhs12229,LSID852,release009,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=SRhi10007,,, | |profile_srnaseq=SRhi10007,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0.0890788809625826,-0.188283251230931,-0.200923657759201,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0.525475840913045,0,0.128122755157816,0,0,-0.0438777088162797,0,0,0,0,0,0,0,0,0,0,0,0,-0.273414620384856,0,0,0,0,0,0,0,0,0.116375407902332,0,0.0629337234952027,0,0,0,0.0793091087996343,0,-0.0969923612426051,0,0,0.183837230817234,0,0,0,0,0,0.0890788809625826,0,0,0,0,0,0,0,0.0890788809625826,0,0,0.0890788809625826,0.174554954485437,0.222070331832907,0,0.162959805635483,0.0155485495689256,0,0.0710806451135456,0.220273625610869,0.251493897983417,0,0.166604133903148,0.338911015143414,0.483538020787774,0,0,0.0445394404812913,0,0.128045300188167,-0.093937760319604,0,0,0,0,0,0,0,0,0,0.0814799028177415,0,0,0,0,0,0,0,0.205879012268613,0.226080651425874,0,0,-0.154187968871398,-0.545718895996629,0,0,0,0,0,0 | |||
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| |||
|rna_box=103 | |rna_box=103 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 56: | Line 83: | ||
|rna_tube_id=103A9 | |rna_tube_id=103A9 | ||
|rna_weight_ug=94.7775 | |rna_weight_ug=94.7775 | ||
|rnaseq_library_id=RDhi10098!SRhi10007.ACTTGA | |||
|sample_age=76 | |sample_age=76 | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 98: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.06967464367042e-219!GO:0043226;organelle;2.3700077949042e-150!GO:0043229;intracellular organelle;7.98719785862125e-150!GO:0043227;membrane-bound organelle;1.75331716942706e-147!GO:0043231;intracellular membrane-bound organelle;2.0537455988028e-147!GO:0005737;cytoplasm;1.05565181069388e-142!GO:0044444;cytoplasmic part;1.78886118635246e-93!GO:0044422;organelle part;8.81721226616166e-84!GO:0044446;intracellular organelle part;2.2635682684232e-82!GO:0032991;macromolecular complex;1.47431859622446e-60!GO:0005515;protein binding;1.64255303053113e-59!GO:0043170;macromolecule metabolic process;1.11640431266403e-55!GO:0005634;nucleus;1.22866352938363e-55!GO:0044238;primary metabolic process;1.13484667285533e-54!GO:0033036;macromolecule localization;6.88614806866174e-54!GO:0044428;nuclear part;1.54481597625058e-53!GO:0003723;RNA binding;2.31400508121207e-53!GO:0015031;protein transport;2.52367069748393e-53!GO:0044237;cellular metabolic process;5.26355418356913e-53!GO:0045184;establishment of protein localization;1.06063182531008e-49!GO:0008104;protein localization;3.70805437919483e-49!GO:0043233;organelle lumen;5.92465532174266e-48!GO:0031974;membrane-enclosed lumen;5.92465532174266e-48!GO:0030529;ribonucleoprotein complex;5.09971899638984e-47!GO:0016043;cellular component organization and biogenesis;1.16626554884466e-45!GO:0043283;biopolymer metabolic process;3.68032444231688e-41!GO:0046907;intracellular transport;2.30292024399746e-40!GO:0031090;organelle membrane;3.9958823309462e-39!GO:0010467;gene expression;2.68027112583346e-37!GO:0006396;RNA processing;5.64977569233419e-37!GO:0016071;mRNA metabolic process;2.72206709295883e-36!GO:0006886;intracellular protein transport;3.73188277304955e-34!GO:0031981;nuclear lumen;9.94127924943919e-34!GO:0005739;mitochondrion;2.80201515054648e-33!GO:0051649;establishment of cellular localization;2.17092962193218e-32!GO:0019538;protein metabolic process;9.95910194318273e-32!GO:0043234;protein complex;1.87287222081748e-31!GO:0051641;cellular localization;3.01184831589753e-31!GO:0008380;RNA splicing;2.47091175003569e-30!GO:0006397;mRNA processing;5.73586068803212e-30!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.55781513571327e-29!GO:0044260;cellular macromolecule metabolic process;3.5121164749623e-27!GO:0044267;cellular protein metabolic process;3.68482390728191e-27!GO:0016192;vesicle-mediated transport;8.09615578535779e-27!GO:0031967;organelle envelope;4.88538347375374e-24!GO:0031975;envelope;8.44564166521116e-24!GO:0005654;nucleoplasm;1.29734906855813e-23!GO:0016070;RNA metabolic process;2.83082841758694e-23!GO:0005794;Golgi apparatus;1.37583089730599e-22!GO:0005840;ribosome;2.63808716366863e-22!GO:0044429;mitochondrial part;5.19318310541013e-22!GO:0005829;cytosol;1.54500242372817e-21!GO:0006412;translation;1.9359346559291e-21!GO:0044451;nucleoplasm part;3.18840867627022e-21!GO:0006512;ubiquitin cycle;8.90479223476938e-21!GO:0000166;nucleotide binding;9.17170267244693e-21!GO:0005681;spliceosome;2.48319284803911e-20!GO:0003676;nucleic acid binding;1.35858311517772e-19!GO:0006119;oxidative phosphorylation;1.01475158864298e-18!GO:0065003;macromolecular complex assembly;2.10521281465787e-18!GO:0012505;endomembrane system;5.49571908259997e-18!GO:0003735;structural constituent of ribosome;3.08208912732761e-17!GO:0048193;Golgi vesicle transport;3.36461152847094e-17!GO:0006996;organelle organization and biogenesis;9.06544915247779e-17!GO:0016874;ligase activity;1.46475503890347e-16!GO:0006457;protein folding;2.58582996144585e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;3.87397798379438e-16!GO:0006511;ubiquitin-dependent protein catabolic process;4.75478013441131e-16!GO:0019941;modification-dependent protein catabolic process;8.68560475960719e-16!GO:0043632;modification-dependent macromolecule catabolic process;8.68560475960719e-16!GO:0043412;biopolymer modification;8.83260701841458e-16!GO:0033279;ribosomal subunit;1.11647612642322e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;1.13488921799195e-15!GO:0008134;transcription factor binding;1.18226184931076e-15!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.21964722228826e-15!GO:0016462;pyrophosphatase activity;1.25253912432902e-15!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.31619819356193e-15!GO:0044257;cellular protein catabolic process;1.88408278982049e-15!GO:0022607;cellular component assembly;2.04378223638843e-15!GO:0031982;vesicle;3.57973384927143e-15!GO:0019866;organelle inner membrane;6.48512987364144e-15!GO:0017111;nucleoside-triphosphatase activity;1.2384527650234e-14!GO:0005740;mitochondrial envelope;1.24259289098259e-14!GO:0043687;post-translational protein modification;1.46011332797042e-14!GO:0031410;cytoplasmic vesicle;1.46011332797042e-14!GO:0006464;protein modification process;1.72657800891882e-14!GO:0044265;cellular macromolecule catabolic process;1.8433720969606e-14!GO:0031966;mitochondrial membrane;1.8433720969606e-14!GO:0009059;macromolecule biosynthetic process;2.68545619896633e-14!GO:0005743;mitochondrial inner membrane;4.06609885780798e-14!GO:0016604;nuclear body;7.04909169622254e-14!GO:0032553;ribonucleotide binding;1.22795447276579e-13!GO:0032555;purine ribonucleotide binding;1.22795447276579e-13!GO:0017076;purine nucleotide binding;1.6848754972427e-13!GO:0006605;protein targeting;3.11420984672523e-13!GO:0043285;biopolymer catabolic process;3.69495901744487e-13!GO:0031988;membrane-bound vesicle;3.7803761916333e-13!GO:0048770;pigment granule;6.65232700667576e-13!GO:0042470;melanosome;6.65232700667576e-13!GO:0016607;nuclear speck;8.37677220437957e-13!GO:0009058;biosynthetic process;1.04803106151938e-12!GO:0016023;cytoplasmic membrane-bound vesicle;1.4904080150524e-12!GO:0008565;protein transporter activity;1.66973767892459e-12!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.03519561060914e-12!GO:0044249;cellular biosynthetic process;2.37947512393313e-12!GO:0022618;protein-RNA complex assembly;3.48406306645773e-12!GO:0051082;unfolded protein binding;4.05240709789152e-12!GO:0044455;mitochondrial membrane part;5.91944329253849e-12!GO:0045045;secretory pathway;6.25235293968474e-12!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;7.18617922226406e-12!GO:0005746;mitochondrial respiratory chain;1.09597668238343e-11!GO:0030163;protein catabolic process;2.39002840065154e-11!GO:0043228;non-membrane-bound organelle;2.42512744841508e-11!GO:0043232;intracellular non-membrane-bound organelle;2.42512744841508e-11!GO:0050136;NADH dehydrogenase (quinone) activity;2.42512744841508e-11!GO:0003954;NADH dehydrogenase activity;2.42512744841508e-11!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.42512744841508e-11!GO:0031965;nuclear membrane;3.5262361084703e-11!GO:0008135;translation factor activity, nucleic acid binding;4.58343822761654e-11!GO:0051169;nuclear transport;4.88540403843857e-11!GO:0009057;macromolecule catabolic process;5.30441160505097e-11!GO:0044445;cytosolic part;8.88228081386313e-11!GO:0048475;coated membrane;9.39036868540193e-11!GO:0030117;membrane coat;9.39036868540193e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;9.43104895401147e-11!GO:0000375;RNA splicing, via transesterification reactions;9.43104895401147e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;9.43104895401147e-11!GO:0006913;nucleocytoplasmic transport;1.79340592765171e-10!GO:0005635;nuclear envelope;2.58276895270803e-10!GO:0005730;nucleolus;2.99363639647285e-10!GO:0003712;transcription cofactor activity;3.31226270427585e-10!GO:0006259;DNA metabolic process;3.762299332772e-10!GO:0044431;Golgi apparatus part;4.27829443712608e-10!GO:0005783;endoplasmic reticulum;4.31258469621011e-10!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;5.06629179051465e-10!GO:0008639;small protein conjugating enzyme activity;5.11727622146134e-10!GO:0004842;ubiquitin-protein ligase activity;6.06690504388942e-10!GO:0042775;organelle ATP synthesis coupled electron transport;9.53755812747499e-10!GO:0042773;ATP synthesis coupled electron transport;9.53755812747499e-10!GO:0030964;NADH dehydrogenase complex (quinone);1.50646726983642e-09!GO:0045271;respiratory chain complex I;1.50646726983642e-09!GO:0005747;mitochondrial respiratory chain complex I;1.50646726983642e-09!GO:0031980;mitochondrial lumen;2.22273415921938e-09!GO:0005759;mitochondrial matrix;2.22273415921938e-09!GO:0005524;ATP binding;2.46706760078811e-09!GO:0032559;adenyl ribonucleotide binding;2.50201315530072e-09!GO:0019787;small conjugating protein ligase activity;3.04907080258765e-09!GO:0044248;cellular catabolic process;3.44010823148176e-09!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.56777495828795e-09!GO:0030554;adenyl nucleotide binding;3.97426995099512e-09!GO:0050794;regulation of cellular process;4.55764263857636e-09!GO:0032940;secretion by cell;4.74918263282419e-09!GO:0016568;chromatin modification;5.64328178490471e-09!GO:0000502;proteasome complex (sensu Eukaryota);1.01858780684066e-08!GO:0006793;phosphorus metabolic process;1.0465533609309e-08!GO:0006796;phosphate metabolic process;1.0465533609309e-08!GO:0015935;small ribosomal subunit;1.1553540443829e-08!GO:0005768;endosome;1.16230757058226e-08!GO:0016887;ATPase activity;1.16230757058226e-08!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.16420308421591e-08!GO:0019829;cation-transporting ATPase activity;1.3086189372884e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.32659304615918e-08!GO:0006888;ER to Golgi vesicle-mediated transport;1.52139968305773e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.68352994027011e-08!GO:0016564;transcription repressor activity;1.79139848345638e-08!GO:0006403;RNA localization;2.00474513950263e-08!GO:0030120;vesicle coat;2.03939799362116e-08!GO:0030662;coated vesicle membrane;2.03939799362116e-08!GO:0015986;ATP synthesis coupled proton transport;2.26099195804612e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.26099195804612e-08!GO:0005798;Golgi-associated vesicle;2.44655862579902e-08!GO:0050657;nucleic acid transport;2.44655862579902e-08!GO:0051236;establishment of RNA localization;2.44655862579902e-08!GO:0050658;RNA transport;2.44655862579902e-08!GO:0006446;regulation of translational initiation;3.32126941031319e-08!GO:0003743;translation initiation factor activity;3.95320197138591e-08!GO:0044432;endoplasmic reticulum part;5.70794971844086e-08!GO:0006461;protein complex assembly;5.86701603370258e-08!GO:0016881;acid-amino acid ligase activity;7.67654810146142e-08!GO:0019222;regulation of metabolic process;7.67654810146142e-08!GO:0004386;helicase activity;8.19452328141992e-08!GO:0005643;nuclear pore;8.89078708986981e-08!GO:0044453;nuclear membrane part;8.91330930408614e-08!GO:0015934;large ribosomal subunit;9.9591439883106e-08!GO:0050789;regulation of biological process;1.17729304563156e-07!GO:0006413;translational initiation;1.31700391057929e-07!GO:0042623;ATPase activity, coupled;1.3681046710722e-07!GO:0000139;Golgi membrane;2.77625481510671e-07!GO:0030135;coated vesicle;2.82588056784546e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;2.98059076152107e-07!GO:0006366;transcription from RNA polymerase II promoter;3.22383904933085e-07!GO:0019899;enzyme binding;5.30838000218608e-07!GO:0015630;microtubule cytoskeleton;6.01265313967409e-07!GO:0048523;negative regulation of cellular process;6.87418294509425e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;7.60620403636596e-07!GO:0030133;transport vesicle;7.99428815924991e-07!GO:0051028;mRNA transport;8.37157988336499e-07!GO:0006323;DNA packaging;9.94418618917461e-07!GO:0017038;protein import;1.22587681602808e-06!GO:0016469;proton-transporting two-sector ATPase complex;1.28654612629597e-06!GO:0006754;ATP biosynthetic process;1.32673366253442e-06!GO:0006753;nucleoside phosphate metabolic process;1.32673366253442e-06!GO:0005793;ER-Golgi intermediate compartment;1.379338046755e-06!GO:0044440;endosomal part;1.53254816847958e-06!GO:0010008;endosome membrane;1.53254816847958e-06!GO:0003714;transcription corepressor activity;1.7286538565999e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.78421340101372e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.78421340101372e-06!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.90845121152063e-06!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.09196628544378e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.22495113090104e-06!GO:0016310;phosphorylation;2.26875918603293e-06!GO:0009142;nucleoside triphosphate biosynthetic process;2.36213172360095e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;2.36213172360095e-06!GO:0006164;purine nucleotide biosynthetic process;2.60385468478429e-06!GO:0009152;purine ribonucleotide biosynthetic process;2.60385468478429e-06!GO:0003924;GTPase activity;2.65167994011738e-06!GO:0008026;ATP-dependent helicase activity;2.72114953525012e-06!GO:0006163;purine nucleotide metabolic process;3.27586528417151e-06!GO:0009150;purine ribonucleotide metabolic process;3.5753346662597e-06!GO:0006350;transcription;3.6018930767433e-06!GO:0000151;ubiquitin ligase complex;3.70946902541441e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;3.79176853767858e-06!GO:0009259;ribonucleotide metabolic process;3.99291328364909e-06!GO:0051186;cofactor metabolic process;4.88675626155062e-06!GO:0006613;cotranslational protein targeting to membrane;5.05876451777471e-06!GO:0005761;mitochondrial ribosome;5.11937613010751e-06!GO:0000313;organellar ribosome;5.11937613010751e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;6.00236264928662e-06!GO:0009144;purine nucleoside triphosphate metabolic process;6.00236264928662e-06!GO:0005770;late endosome;6.01179405848211e-06!GO:0031323;regulation of cellular metabolic process;6.13403887037691e-06!GO:0005525;GTP binding;6.25405088678477e-06!GO:0043566;structure-specific DNA binding;6.42937423746625e-06!GO:0015078;hydrogen ion transmembrane transporter activity;7.17851642735261e-06!GO:0009199;ribonucleoside triphosphate metabolic process;7.47432682173213e-06!GO:0042175;nuclear envelope-endoplasmic reticulum network;7.57167997573099e-06!GO:0046034;ATP metabolic process;7.61735725369168e-06!GO:0009141;nucleoside triphosphate metabolic process;7.7806062588587e-06!GO:0007264;small GTPase mediated signal transduction;8.92960264488769e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;9.3484112726025e-06!GO:0031252;leading edge;1.03543555918371e-05!GO:0009260;ribonucleotide biosynthetic process;1.0382519020559e-05!GO:0032446;protein modification by small protein conjugation;1.21241364617303e-05!GO:0005083;small GTPase regulator activity;1.22072863018233e-05!GO:0005789;endoplasmic reticulum membrane;1.22246872717073e-05!GO:0016044;membrane organization and biogenesis;1.39593496515011e-05!GO:0010468;regulation of gene expression;1.40065282541639e-05!GO:0046930;pore complex;1.45172597107455e-05!GO:0045333;cellular respiration;1.55655195671766e-05!GO:0000245;spliceosome assembly;1.65667898750429e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;1.65667898750429e-05!GO:0048471;perinuclear region of cytoplasm;1.86971612268153e-05!GO:0051170;nuclear import;1.97604394970028e-05!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.12953590840746e-05!GO:0004812;aminoacyl-tRNA ligase activity;2.12953590840746e-05!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.12953590840746e-05!GO:0009060;aerobic respiration;2.47618385772039e-05!GO:0051276;chromosome organization and biogenesis;2.66013747750081e-05!GO:0006606;protein import into nucleus;2.72904302056962e-05!GO:0030118;clathrin coat;2.75381531630257e-05!GO:0045259;proton-transporting ATP synthase complex;2.76889342293943e-05!GO:0016567;protein ubiquitination;2.76889342293943e-05!GO:0048519;negative regulation of biological process;2.87274355349891e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;2.95903413477816e-05!GO:0065002;intracellular protein transport across a membrane;3.1395106977952e-05!GO:0006974;response to DNA damage stimulus;3.1395106977952e-05!GO:0032561;guanyl ribonucleotide binding;3.19004301709151e-05!GO:0019001;guanyl nucleotide binding;3.19004301709151e-05!GO:0006732;coenzyme metabolic process;3.38637009829809e-05!GO:0032774;RNA biosynthetic process;4.31218518821526e-05!GO:0043038;amino acid activation;4.41123728229042e-05!GO:0006418;tRNA aminoacylation for protein translation;4.41123728229042e-05!GO:0043039;tRNA aminoacylation;4.41123728229042e-05!GO:0030658;transport vesicle membrane;4.44804870215467e-05!GO:0008092;cytoskeletal protein binding;4.5725622793699e-05!GO:0006351;transcription, DNA-dependent;4.62587786676607e-05!GO:0051168;nuclear export;4.9526211242387e-05!GO:0009055;electron carrier activity;5.03026466236861e-05!GO:0030695;GTPase regulator activity;5.28017088553001e-05!GO:0012501;programmed cell death;5.94688564427918e-05!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.08896133896245e-05!GO:0006612;protein targeting to membrane;6.19070010439032e-05!GO:0006915;apoptosis;7.08381079847269e-05!GO:0009892;negative regulation of metabolic process;7.32973905106031e-05!GO:0005773;vacuole;7.44891060894227e-05!GO:0031324;negative regulation of cellular metabolic process;7.76736233154079e-05!GO:0031072;heat shock protein binding;7.84760741376761e-05!GO:0003713;transcription coactivator activity;7.89015389791774e-05!GO:0065007;biological regulation;8.1795709017788e-05!GO:0003724;RNA helicase activity;8.1795709017788e-05!GO:0008270;zinc ion binding;0.00011447177104368!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000124548011843595!GO:0008219;cell death;0.000127208412558491!GO:0016265;death;0.000127208412558491!GO:0015631;tubulin binding;0.000140149683494708!GO:0006891;intra-Golgi vesicle-mediated transport;0.000153002182217575!GO:0016481;negative regulation of transcription;0.000163319530102331!GO:0006892;post-Golgi vesicle-mediated transport;0.000193917368178541!GO:0030660;Golgi-associated vesicle membrane;0.000194372536669847!GO:0006399;tRNA metabolic process;0.000201329811416136!GO:0045449;regulation of transcription;0.000210403950175616!GO:0043069;negative regulation of programmed cell death;0.000210541832444437!GO:0051188;cofactor biosynthetic process;0.000217710994470938!GO:0009056;catabolic process;0.000221891608588847!GO:0008654;phospholipid biosynthetic process;0.000237864327102645!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000237864327102645!GO:0015399;primary active transmembrane transporter activity;0.000237864327102645!GO:0022406;membrane docking;0.000237864327102645!GO:0048278;vesicle docking;0.000237864327102645!GO:0005769;early endosome;0.000242093233685306!GO:0005874;microtubule;0.000248587084771576!GO:0003697;single-stranded DNA binding;0.000262152705161325!GO:0008287;protein serine/threonine phosphatase complex;0.000279815119998492!GO:0043066;negative regulation of apoptosis;0.000282938721999188!GO:0006281;DNA repair;0.00028469689111163!GO:0009108;coenzyme biosynthetic process;0.00032591760609516!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000339259146481225!GO:0042254;ribosome biogenesis and assembly;0.000345223373694209!GO:0006897;endocytosis;0.000351218880607967!GO:0010324;membrane invagination;0.000351218880607967!GO:0016740;transferase activity;0.00036372065824185!GO:0005813;centrosome;0.000371422356622801!GO:0006904;vesicle docking during exocytosis;0.000390067838337306!GO:0006402;mRNA catabolic process;0.000396259646366254!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000403424780477982!GO:0005667;transcription factor complex;0.000406779994326859!GO:0006355;regulation of transcription, DNA-dependent;0.000409636582376555!GO:0006916;anti-apoptosis;0.000416494465570943!GO:0006099;tricarboxylic acid cycle;0.00043296664800604!GO:0046356;acetyl-CoA catabolic process;0.00043296664800604!GO:0003729;mRNA binding;0.00043867127752474!GO:0043623;cellular protein complex assembly;0.000451215228342216!GO:0051246;regulation of protein metabolic process;0.000460935315738762!GO:0030134;ER to Golgi transport vesicle;0.000492623632119629!GO:0004674;protein serine/threonine kinase activity;0.000515085752781323!GO:0030137;COPI-coated vesicle;0.000572109564729074!GO:0030532;small nuclear ribonucleoprotein complex;0.000632577212023684!GO:0051789;response to protein stimulus;0.000644239604230774!GO:0006986;response to unfolded protein;0.000644239604230774!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000649966931528353!GO:0030867;rough endoplasmic reticulum membrane;0.000681406495199194!GO:0016859;cis-trans isomerase activity;0.000683704350633412!GO:0000323;lytic vacuole;0.000687926405127034!GO:0005764;lysosome;0.000687926405127034!GO:0048500;signal recognition particle;0.000698975952948563!GO:0008250;oligosaccharyl transferase complex;0.000749876471912133!GO:0006752;group transfer coenzyme metabolic process;0.000761644441692351!GO:0008017;microtubule binding;0.000777112606816451!GO:0043492;ATPase activity, coupled to movement of substances;0.000784265343192941!GO:0030127;COPII vesicle coat;0.000811462813032092!GO:0012507;ER to Golgi transport vesicle membrane;0.000811462813032092!GO:0051427;hormone receptor binding;0.000860393219980321!GO:0003690;double-stranded DNA binding;0.000870211331415597!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000870848902981517!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000938785721821888!GO:0016363;nuclear matrix;0.000971823460478051!GO:0005815;microtubule organizing center;0.00106891014824091!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00110919694457123!GO:0016197;endosome transport;0.0011497201351024!GO:0030036;actin cytoskeleton organization and biogenesis;0.00134197418280361!GO:0006084;acetyl-CoA metabolic process;0.00135554098306661!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00150473305859057!GO:0005905;coated pit;0.00153496699786547!GO:0019783;small conjugating protein-specific protease activity;0.00154903261057638!GO:0035257;nuclear hormone receptor binding;0.00155766705987564!GO:0016791;phosphoric monoester hydrolase activity;0.0016208633787887!GO:0009109;coenzyme catabolic process;0.00172410393127629!GO:0043021;ribonucleoprotein binding;0.00173768147549505!GO:0051920;peroxiredoxin activity;0.00178147324904463!GO:0016301;kinase activity;0.00180846297761559!GO:0004576;oligosaccharyl transferase activity;0.00183533148963214!GO:0045786;negative regulation of progression through cell cycle;0.00185750937543908!GO:0005774;vacuolar membrane;0.0018889583882688!GO:0031628;opioid receptor binding;0.00189323289745006!GO:0031852;mu-type opioid receptor binding;0.00189323289745006!GO:0006607;NLS-bearing substrate import into nucleus;0.0019089263558309!GO:0004221;ubiquitin thiolesterase activity;0.00191877387124003!GO:0016563;transcription activator activity;0.0019362789530608!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00193873338745324!GO:0045047;protein targeting to ER;0.00193873338745324!GO:0030663;COPI coated vesicle membrane;0.00193873338745324!GO:0030126;COPI vesicle coat;0.00193873338745324!GO:0009719;response to endogenous stimulus;0.0019651851404863!GO:0005788;endoplasmic reticulum lumen;0.0019651851404863!GO:0008186;RNA-dependent ATPase activity;0.00200888712665401!GO:0005048;signal sequence binding;0.00200888712665401!GO:0004843;ubiquitin-specific protease activity;0.00201622293542156!GO:0000059;protein import into nucleus, docking;0.00214022439631237!GO:0005839;proteasome core complex (sensu Eukaryota);0.00226184114327584!GO:0004721;phosphoprotein phosphatase activity;0.00235581826274998!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00238225436008031!GO:0033673;negative regulation of kinase activity;0.00242737334278842!GO:0006469;negative regulation of protein kinase activity;0.00242737334278842!GO:0046914;transition metal ion binding;0.00246146568189116!GO:0012506;vesicle membrane;0.0026251990631223!GO:0045892;negative regulation of transcription, DNA-dependent;0.00268970100493529!GO:0051087;chaperone binding;0.00284878081366971!GO:0051128;regulation of cellular component organization and biogenesis;0.00326311914413904!GO:0007049;cell cycle;0.00340228859402976!GO:0004298;threonine endopeptidase activity;0.00367933191506089!GO:0030119;AP-type membrane coat adaptor complex;0.00391443848186066!GO:0030027;lamellipodium;0.00396057290775303!GO:0008312;7S RNA binding;0.00403966791588732!GO:0006414;translational elongation;0.004068757431054!GO:0031902;late endosome membrane;0.00413102699274759!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00413102699274759!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00413102699274759!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00413102699274759!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00414984182875751!GO:0016311;dephosphorylation;0.00428721767321013!GO:0030384;phosphoinositide metabolic process;0.00461438590211838!GO:0006383;transcription from RNA polymerase III promoter;0.00464555990577232!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0047840431976712!GO:0031124;mRNA 3'-end processing;0.0047840431976712!GO:0006401;RNA catabolic process;0.00482189913761389!GO:0051187;cofactor catabolic process;0.00503929103947522!GO:0008047;enzyme activator activity;0.00514115284602426!GO:0022890;inorganic cation transmembrane transporter activity;0.00528555163572491!GO:0044433;cytoplasmic vesicle part;0.00529863109493336!GO:0005791;rough endoplasmic reticulum;0.00542411036111326!GO:0030029;actin filament-based process;0.00558115555776718!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00558115555776718!GO:0030131;clathrin adaptor complex;0.00570122249736868!GO:0004004;ATP-dependent RNA helicase activity;0.0057020692526453!GO:0046489;phosphoinositide biosynthetic process;0.00596596748337835!GO:0030136;clathrin-coated vesicle;0.00629870319997365!GO:0008601;protein phosphatase type 2A regulator activity;0.00635980423082433!GO:0005096;GTPase activator activity;0.00654029792398648!GO:0007265;Ras protein signal transduction;0.00657127501601661!GO:0043087;regulation of GTPase activity;0.00683500467884124!GO:0016050;vesicle organization and biogenesis;0.00711048127937313!GO:0044437;vacuolar part;0.00743831804110937!GO:0050811;GABA receptor binding;0.00747704632094317!GO:0031123;RNA 3'-end processing;0.00751650571935102!GO:0005765;lysosomal membrane;0.00786905933306972!GO:0006611;protein export from nucleus;0.00788371689241154!GO:0008286;insulin receptor signaling pathway;0.00792805512199181!GO:0016072;rRNA metabolic process;0.00797584739025476!GO:0048489;synaptic vesicle transport;0.00801760098197278!GO:0005875;microtubule associated complex;0.00814734087565609!GO:0008361;regulation of cell size;0.00818111138959761!GO:0030140;trans-Golgi network transport vesicle;0.00846374838482938!GO:0003711;transcription elongation regulator activity;0.00852380114222904!GO:0030659;cytoplasmic vesicle membrane;0.00858326060276845!GO:0051348;negative regulation of transferase activity;0.00862871618091476!GO:0006405;RNA export from nucleus;0.00873347333408707!GO:0006364;rRNA processing;0.00874093215487062!GO:0046903;secretion;0.00876051494142305!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.00885583964676566!GO:0003702;RNA polymerase II transcription factor activity;0.00904665185243875!GO:0046467;membrane lipid biosynthetic process;0.00904665185243875!GO:0018196;peptidyl-asparagine modification;0.00904814722128529!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00904814722128529!GO:0000209;protein polyubiquitination;0.00925608055109723!GO:0030521;androgen receptor signaling pathway;0.00927234774605752!GO:0015980;energy derivation by oxidation of organic compounds;0.00966504513945286!GO:0007010;cytoskeleton organization and biogenesis;0.00997476834327249!GO:0051252;regulation of RNA metabolic process;0.0104135797287704!GO:0004860;protein kinase inhibitor activity;0.0104661643930603!GO:0016790;thiolester hydrolase activity;0.0104661643930603!GO:0000118;histone deacetylase complex;0.0106178362033598!GO:0042026;protein refolding;0.0107180647406892!GO:0031625;ubiquitin protein ligase binding;0.0107455962020264!GO:0008139;nuclear localization sequence binding;0.0113020382027971!GO:0000159;protein phosphatase type 2A complex;0.0116626125648292!GO:0035258;steroid hormone receptor binding;0.0120332695337319!GO:0030518;steroid hormone receptor signaling pathway;0.0120332695337319!GO:0019887;protein kinase regulator activity;0.0120332695337319!GO:0030125;clathrin vesicle coat;0.0122556446156341!GO:0030665;clathrin coated vesicle membrane;0.0122556446156341!GO:0016251;general RNA polymerase II transcription factor activity;0.0122556446156341!GO:0006810;transport;0.0122556446156341!GO:0033116;ER-Golgi intermediate compartment membrane;0.0122749318038551!GO:0006470;protein amino acid dephosphorylation;0.0124372970240874!GO:0006650;glycerophospholipid metabolic process;0.0124784913570612!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.0125451263602789!GO:0006818;hydrogen transport;0.0128725309753973!GO:0016049;cell growth;0.013018553817514!GO:0007243;protein kinase cascade;0.0132549808389513!GO:0005869;dynactin complex;0.0145670812947311!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0151285092259004!GO:0016779;nucleotidyltransferase activity;0.0151285092259004!GO:0008154;actin polymerization and/or depolymerization;0.0151285092259004!GO:0015992;proton transport;0.015492882312795!GO:0005099;Ras GTPase activator activity;0.0157078799850531!GO:0001558;regulation of cell growth;0.0157788861090481!GO:0000049;tRNA binding;0.0160035175162623!GO:0007004;telomere maintenance via telomerase;0.0160919227202456!GO:0001726;ruffle;0.0160919227202456!GO:0016853;isomerase activity;0.0162405342762562!GO:0046474;glycerophospholipid biosynthetic process;0.0163770413247429!GO:0006352;transcription initiation;0.0165712713367437!GO:0006378;mRNA polyadenylation;0.016652998687649!GO:0003746;translation elongation factor activity;0.0167084771985252!GO:0016585;chromatin remodeling complex;0.0175316218987598!GO:0007030;Golgi organization and biogenesis;0.0175316218987598!GO:0007242;intracellular signaling cascade;0.0178597661465101!GO:0048487;beta-tubulin binding;0.0181964949368129!GO:0043067;regulation of programmed cell death;0.0184306474075642!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0184306474075642!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0184306474075642!GO:0005868;cytoplasmic dynein complex;0.0186098978049297!GO:0016615;malate dehydrogenase activity;0.0187575364671829!GO:0000314;organellar small ribosomal subunit;0.0195255155783465!GO:0005763;mitochondrial small ribosomal subunit;0.0195255155783465!GO:0005852;eukaryotic translation initiation factor 3 complex;0.0198583087008857!GO:0008022;protein C-terminus binding;0.020079080383232!GO:0005885;Arp2/3 protein complex;0.0201074180104843!GO:0006376;mRNA splice site selection;0.0201351699757764!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0201351699757764!GO:0051129;negative regulation of cellular component organization and biogenesis;0.0202954319545124!GO:0042981;regulation of apoptosis;0.0209200485220303!GO:0004722;protein serine/threonine phosphatase activity;0.0211651510236424!GO:0045893;positive regulation of transcription, DNA-dependent;0.0212823279521543!GO:0006333;chromatin assembly or disassembly;0.0221106142206543!GO:0031901;early endosome membrane;0.0231251609540458!GO:0030132;clathrin coat of coated pit;0.0235752271086402!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0240001414204176!GO:0032200;telomere organization and biogenesis;0.0240001414204176!GO:0000723;telomere maintenance;0.0240001414204176!GO:0008234;cysteine-type peptidase activity;0.0246781206090654!GO:0006338;chromatin remodeling;0.0252858844184725!GO:0047485;protein N-terminus binding;0.0260905517151797!GO:0051726;regulation of cell cycle;0.0263968370260147!GO:0003779;actin binding;0.026485279742408!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0266909229677342!GO:0007005;mitochondrion organization and biogenesis;0.0267250397100215!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0267819554217399!GO:0008097;5S rRNA binding;0.0273361906244995!GO:0000074;regulation of progression through cell cycle;0.0275605840118982!GO:0000781;chromosome, telomeric region;0.0284803952721239!GO:0050681;androgen receptor binding;0.0285319086875369!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0300161863344031!GO:0005938;cell cortex;0.0308408896298291!GO:0008180;signalosome;0.0314286263745045!GO:0019207;kinase regulator activity;0.032040315318114!GO:0006661;phosphatidylinositol biosynthetic process;0.0322519276241088!GO:0030880;RNA polymerase complex;0.0323576548215432!GO:0030176;integral to endoplasmic reticulum membrane;0.0325932366588054!GO:0031461;cullin-RING ubiquitin ligase complex;0.0329425120364627!GO:0051056;regulation of small GTPase mediated signal transduction;0.0334471642611802!GO:0035035;histone acetyltransferase binding;0.0352511456717054!GO:0000287;magnesium ion binding;0.0358384886304074!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.0362596204559926!GO:0015002;heme-copper terminal oxidase activity;0.0362596204559926!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.0362596204559926!GO:0004129;cytochrome-c oxidase activity;0.0362596204559926!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0366311092315464!GO:0030130;clathrin coat of trans-Golgi network vesicle;0.0366311092315464!GO:0012510;trans-Golgi network transport vesicle membrane;0.0366311092315464!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0391200419199763!GO:0006595;polyamine metabolic process;0.0397119020798086!GO:0043631;RNA polyadenylation;0.0402823018941549!GO:0009117;nucleotide metabolic process;0.0409594322397387!GO:0005802;trans-Golgi network;0.0414349207783024!GO:0035034;histone acetyltransferase regulator activity;0.0417307988758582!GO:0006108;malate metabolic process;0.0419410815426076!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0420632145056206!GO:0043488;regulation of mRNA stability;0.0420632145056206!GO:0043487;regulation of RNA stability;0.0420632145056206!GO:0006984;ER-nuclear signaling pathway;0.0421367326894795!GO:0019902;phosphatase binding;0.042236780664525!GO:0004726;non-membrane spanning protein tyrosine phosphatase activity;0.0422510294159883!GO:0005832;chaperonin-containing T-complex;0.0427027536970117!GO:0007034;vacuolar transport;0.0427863887483829!GO:0019210;kinase inhibitor activity;0.042812345543733!GO:0005741;mitochondrial outer membrane;0.0430339331493354!GO:0030569;chymotrypsin inhibitor activity;0.0433600596336351!GO:0016579;protein deubiquitination;0.0442057421610641!GO:0019208;phosphatase regulator activity;0.0442513286831624!GO:0048245;eosinophil chemotaxis;0.0442598655586495!GO:0005784;translocon complex;0.0475748904085957!GO:0030427;site of polarized growth;0.048174905173427!GO:0065009;regulation of a molecular function;0.0493107870737761!GO:0019867;outer membrane;0.0495356232713268 | |||
|sample_id=10162 | |sample_id=10162 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 106: | ||
|sample_tissue=pituitary gland | |sample_tissue=pituitary gland | ||
|top_motifs=RFX1:4.19776464054;RFX2..5_RFXANK_RFXAP:3.5258729533;LHX3,4:3.44218604781;ATF2:2.48305908955;NRF1:2.42412860908;ALX1:2.36819892382;ADNP_IRX_SIX_ZHX:2.31016720269;POU6F1:2.30774181909;AR:2.26839030252;FOXN1:2.23053685045;EP300:2.08648735129;MYFfamily:2.03147426236;FOXA2:1.94342339771;CREB1:1.85885506737;BPTF:1.8250787278;SNAI1..3:1.81789748263;TGIF1:1.81089332277;MYOD1:1.7878814861;ZFP161:1.78374134683;RREB1:1.72484481075;SREBF1,2:1.7086591407;REST:1.69178027124;ZEB1:1.67449019795;AHR_ARNT_ARNT2:1.6452377327;NANOG:1.61597593622;STAT1,3:1.6081738014;NKX6-1,2:1.59141924462;MED-1{core}:1.58179065344;PATZ1:1.55766681603;NHLH1,2:1.54901915592;SP1:1.44912535686;EGR1..3:1.42286518983;PRRX1,2:1.40937139936;FOX{D1,D2}:1.36775213186;LMO2:1.36370650337;FOXP3:1.3283983904;TLX2:1.32415432106;GTF2I:1.30320250205;ZNF143:1.28074466542;ARID5B:1.26322847772;HIC1:1.25489641257;POU1F1:1.24864706749;ATF6:1.23352079877;CUX2:1.19741444941;PRDM1:1.18091855401;MAZ:1.16289940147;MAFB:1.14494457474;AIRE:1.13994408967;NKX2-3_NKX2-5:1.13684645163;PAX1,9:1.13146715588;TFAP2B:1.07799087232;ELK1,4_GABP{A,B1}:1.07075663217;ONECUT1,2:1.05849601425;CDC5L:1.05688915802;JUN:1.01294047918;NR3C1:1.01198833099;TEF:0.992872871975;GFI1B:0.986067786944;FOX{F1,F2,J1}:0.980424336691;DBP:0.977188011038;HMGA1,2:0.975671419662;FOXP1:0.951525350753;STAT2,4,6:0.938822928613;ATF4:0.898195236811;PAX5:0.888294013416;MTE{core}:0.887558223208;NFIX:0.886968442856;HOXA9_MEIS1:0.874400046243;GFI1:0.866600191378;HAND1,2:0.826701646213;MTF1:0.804527440358;CRX:0.801139345105;ATF5_CREB3:0.782812812148;NFIL3:0.776344853776;RBPJ:0.7671449542;HOX{A6,A7,B6,B7}:0.761746008217;IRF7:0.754847916541;MZF1:0.754789512619;TBX4,5:0.742297123444;HMX1:0.73791196237;FOXM1:0.723479530846;YY1:0.721969231518;PAX4:0.702462851869;PAX6:0.65626357528;BREu{core}:0.612104826478;FOXO1,3,4:0.593223109453;RORA:0.55150987268;GCM1,2:0.544755470338;SPZ1:0.497139265905;GATA4:0.462966108142;OCT4_SOX2{dimer}:0.45147888455;TOPORS:0.448202725741;ZBTB6:0.427439610897;NKX3-2:0.425626007747;SOX5:0.401049471521;LEF1_TCF7_TCF7L1,2:0.393049097562;MEF2{A,B,C,D}:0.363635396918;HOX{A4,D4}:0.356867019237;PITX1..3:0.354910184522;SOX2:0.326368282286;HIF1A:0.326048965088;KLF4:0.325218167555;ESRRA:0.296115052754;PDX1:0.282460415837;SMAD1..7,9:0.272044939565;SOX17:0.26990572057;EBF1:0.246986415676;NFY{A,B,C}:0.228405945952;XBP1:0.19771960532;FOX{I1,J2}:0.19287405977;PBX1:0.185779140846;SOX{8,9,10}:0.174030285654;EVI1:0.1308153706;GATA6:0.095960534246;ZBTB16:0.0825689927034;PAX3,7:0.050387054947;XCPE1{core}:0.0469331354433;MYBL2:0.00772277412966;HSF1,2:0.00472387335429;VSX1,2:-0.0112809498212;PAX2:-0.0198590512451;IRF1,2:-0.0254755794902;ZIC1..3:-0.0400853743097;SPIB:-0.0937819243843;ELF1,2,4:-0.101359289924;CEBPA,B_DDIT3:-0.118598521573;NKX3-1:-0.142374508188;POU5F1:-0.17120523534;TLX1..3_NFIC{dimer}:-0.190958817436;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.191944236217;FOXD3:-0.201880791747;NR1H4:-0.216082958012;TBP:-0.216287575132;NKX2-1,4:-0.217383837208;NANOG{mouse}:-0.257351614542;FOXQ1:-0.307100917248;ZNF384:-0.30774256788;TFAP4:-0.319392138356;POU3F1..4:-0.323509121772;TEAD1:-0.350071495581;NFATC1..3:-0.366733131372;ZNF423:-0.376489850691;IKZF2:-0.399065131378;TP53:-0.414458283865;SPI1:-0.425795873855;ETS1,2:-0.434480652156;NFE2:-0.452295117574;FOSL2:-0.465380323363;HNF1A:-0.468678388102;HBP1_HMGB_SSRP1_UBTF:-0.473180220019;TFAP2{A,C}:-0.491778746716;GTF2A1,2:-0.495929833049;NFE2L1:-0.530422117989;TFDP1:-0.553565248168;DMAP1_NCOR{1,2}_SMARC:-0.578930671012;ZNF238:-0.581511876962;HLF:-0.590071247452;STAT5{A,B}:-0.59416079484;TFCP2:-0.599017872167;RXRA_VDR{dimer}:-0.634842694747;FOXL1:-0.644709697158;TAL1_TCF{3,4,12}:-0.663167349707;FOS_FOS{B,L1}_JUN{B,D}:-0.688440449516;MYB:-0.698047289723;CDX1,2,4:-0.717912589792;NFE2L2:-0.719668342828;BACH2:-0.757257749415;NFKB1_REL_RELA:-0.757452904877;NR5A1,2:-0.789718750366;GZF1:-0.810458688848;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.818546242106;HNF4A_NR2F1,2:-0.882048884641;GLI1..3:-0.893559889223;IKZF1:-0.927640604146;T:-0.940091583921;bHLH_family:-0.962538793259;RUNX1..3:-0.981256120193;E2F1..5:-1.03006717232;POU2F1..3:-1.05733605719;PAX8:-1.06775628883;ALX4:-1.11365099795;UFEwm:-1.14507201328;PPARG:-1.31722164101;NR6A1:-1.36910131333;HOX{A5,B5}:-1.39263024146;ESR1:-1.43423291323;SRF:-1.48417953779;RXR{A,B,G}:-1.74176365674;EN1,2:-1.74543092557;ZNF148:-1.80789673924;NKX2-2,8:-2.23799471148;HES1:-2.58476028233 | |top_motifs=RFX1:4.19776464054;RFX2..5_RFXANK_RFXAP:3.5258729533;LHX3,4:3.44218604781;ATF2:2.48305908955;NRF1:2.42412860908;ALX1:2.36819892382;ADNP_IRX_SIX_ZHX:2.31016720269;POU6F1:2.30774181909;AR:2.26839030252;FOXN1:2.23053685045;EP300:2.08648735129;MYFfamily:2.03147426236;FOXA2:1.94342339771;CREB1:1.85885506737;BPTF:1.8250787278;SNAI1..3:1.81789748263;TGIF1:1.81089332277;MYOD1:1.7878814861;ZFP161:1.78374134683;RREB1:1.72484481075;SREBF1,2:1.7086591407;REST:1.69178027124;ZEB1:1.67449019795;AHR_ARNT_ARNT2:1.6452377327;NANOG:1.61597593622;STAT1,3:1.6081738014;NKX6-1,2:1.59141924462;MED-1{core}:1.58179065344;PATZ1:1.55766681603;NHLH1,2:1.54901915592;SP1:1.44912535686;EGR1..3:1.42286518983;PRRX1,2:1.40937139936;FOX{D1,D2}:1.36775213186;LMO2:1.36370650337;FOXP3:1.3283983904;TLX2:1.32415432106;GTF2I:1.30320250205;ZNF143:1.28074466542;ARID5B:1.26322847772;HIC1:1.25489641257;POU1F1:1.24864706749;ATF6:1.23352079877;CUX2:1.19741444941;PRDM1:1.18091855401;MAZ:1.16289940147;MAFB:1.14494457474;AIRE:1.13994408967;NKX2-3_NKX2-5:1.13684645163;PAX1,9:1.13146715588;TFAP2B:1.07799087232;ELK1,4_GABP{A,B1}:1.07075663217;ONECUT1,2:1.05849601425;CDC5L:1.05688915802;JUN:1.01294047918;NR3C1:1.01198833099;TEF:0.992872871975;GFI1B:0.986067786944;FOX{F1,F2,J1}:0.980424336691;DBP:0.977188011038;HMGA1,2:0.975671419662;FOXP1:0.951525350753;STAT2,4,6:0.938822928613;ATF4:0.898195236811;PAX5:0.888294013416;MTE{core}:0.887558223208;NFIX:0.886968442856;HOXA9_MEIS1:0.874400046243;GFI1:0.866600191378;HAND1,2:0.826701646213;MTF1:0.804527440358;CRX:0.801139345105;ATF5_CREB3:0.782812812148;NFIL3:0.776344853776;RBPJ:0.7671449542;HOX{A6,A7,B6,B7}:0.761746008217;IRF7:0.754847916541;MZF1:0.754789512619;TBX4,5:0.742297123444;HMX1:0.73791196237;FOXM1:0.723479530846;YY1:0.721969231518;PAX4:0.702462851869;PAX6:0.65626357528;BREu{core}:0.612104826478;FOXO1,3,4:0.593223109453;RORA:0.55150987268;GCM1,2:0.544755470338;SPZ1:0.497139265905;GATA4:0.462966108142;OCT4_SOX2{dimer}:0.45147888455;TOPORS:0.448202725741;ZBTB6:0.427439610897;NKX3-2:0.425626007747;SOX5:0.401049471521;LEF1_TCF7_TCF7L1,2:0.393049097562;MEF2{A,B,C,D}:0.363635396918;HOX{A4,D4}:0.356867019237;PITX1..3:0.354910184522;SOX2:0.326368282286;HIF1A:0.326048965088;KLF4:0.325218167555;ESRRA:0.296115052754;PDX1:0.282460415837;SMAD1..7,9:0.272044939565;SOX17:0.26990572057;EBF1:0.246986415676;NFY{A,B,C}:0.228405945952;XBP1:0.19771960532;FOX{I1,J2}:0.19287405977;PBX1:0.185779140846;SOX{8,9,10}:0.174030285654;EVI1:0.1308153706;GATA6:0.095960534246;ZBTB16:0.0825689927034;PAX3,7:0.050387054947;XCPE1{core}:0.0469331354433;MYBL2:0.00772277412966;HSF1,2:0.00472387335429;VSX1,2:-0.0112809498212;PAX2:-0.0198590512451;IRF1,2:-0.0254755794902;ZIC1..3:-0.0400853743097;SPIB:-0.0937819243843;ELF1,2,4:-0.101359289924;CEBPA,B_DDIT3:-0.118598521573;NKX3-1:-0.142374508188;POU5F1:-0.17120523534;TLX1..3_NFIC{dimer}:-0.190958817436;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.191944236217;FOXD3:-0.201880791747;NR1H4:-0.216082958012;TBP:-0.216287575132;NKX2-1,4:-0.217383837208;NANOG{mouse}:-0.257351614542;FOXQ1:-0.307100917248;ZNF384:-0.30774256788;TFAP4:-0.319392138356;POU3F1..4:-0.323509121772;TEAD1:-0.350071495581;NFATC1..3:-0.366733131372;ZNF423:-0.376489850691;IKZF2:-0.399065131378;TP53:-0.414458283865;SPI1:-0.425795873855;ETS1,2:-0.434480652156;NFE2:-0.452295117574;FOSL2:-0.465380323363;HNF1A:-0.468678388102;HBP1_HMGB_SSRP1_UBTF:-0.473180220019;TFAP2{A,C}:-0.491778746716;GTF2A1,2:-0.495929833049;NFE2L1:-0.530422117989;TFDP1:-0.553565248168;DMAP1_NCOR{1,2}_SMARC:-0.578930671012;ZNF238:-0.581511876962;HLF:-0.590071247452;STAT5{A,B}:-0.59416079484;TFCP2:-0.599017872167;RXRA_VDR{dimer}:-0.634842694747;FOXL1:-0.644709697158;TAL1_TCF{3,4,12}:-0.663167349707;FOS_FOS{B,L1}_JUN{B,D}:-0.688440449516;MYB:-0.698047289723;CDX1,2,4:-0.717912589792;NFE2L2:-0.719668342828;BACH2:-0.757257749415;NFKB1_REL_RELA:-0.757452904877;NR5A1,2:-0.789718750366;GZF1:-0.810458688848;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.818546242106;HNF4A_NR2F1,2:-0.882048884641;GLI1..3:-0.893559889223;IKZF1:-0.927640604146;T:-0.940091583921;bHLH_family:-0.962538793259;RUNX1..3:-0.981256120193;E2F1..5:-1.03006717232;POU2F1..3:-1.05733605719;PAX8:-1.06775628883;ALX4:-1.11365099795;UFEwm:-1.14507201328;PPARG:-1.31722164101;NR6A1:-1.36910131333;HOX{A5,B5}:-1.39263024146;ESR1:-1.43423291323;SRF:-1.48417953779;RXR{A,B,G}:-1.74176365674;EN1,2:-1.74543092557;ZNF148:-1.80789673924;NKX2-2,8:-2.23799471148;HES1:-2.58476028233 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10162-103A9;search_select_hide=table117:FF:10162-103A9 | |||
}} | }} | ||
Latest revision as of 12:23, 3 June 2020
| Name: | pituitary gland, adult, donor10252 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12229 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| HumanCAGEScan Download raw sequence, BAM & CTSS | ||||||||||||||||||
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| RNA-Seq Accession numbers | |||||||||||||||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12229
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12229
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.064 |
| 10 | 10 | 0.0594 |
| 100 | 100 | 0.413 |
| 101 | 101 | 0.685 |
| 102 | 102 | 0.917 |
| 103 | 103 | 0.102 |
| 104 | 104 | 0.207 |
| 105 | 105 | 0.807 |
| 106 | 106 | 0.00122 |
| 107 | 107 | 0.01 |
| 108 | 108 | 0.393 |
| 109 | 109 | 0.0148 |
| 11 | 11 | 0.0187 |
| 110 | 110 | 0.0967 |
| 111 | 111 | 0.0664 |
| 112 | 112 | 0.487 |
| 113 | 113 | 0.625 |
| 114 | 114 | 0.0757 |
| 115 | 115 | 0.642 |
| 116 | 116 | 0.0675 |
| 117 | 117 | 0.0675 |
| 118 | 118 | 0.296 |
| 119 | 119 | 0.0608 |
| 12 | 12 | 0.992 |
| 120 | 120 | 0.138 |
| 121 | 121 | 0.806 |
| 122 | 122 | 0.605 |
| 123 | 123 | 0.771 |
| 124 | 124 | 0.704 |
| 125 | 125 | 0.0583 |
| 126 | 126 | 0.25 |
| 127 | 127 | 0.322 |
| 128 | 128 | 0.0305 |
| 129 | 129 | 0.242 |
| 13 | 13 | 0.016 |
| 130 | 130 | 0.34 |
| 131 | 131 | 0.413 |
| 132 | 132 | 0.888 |
| 133 | 133 | 0.277 |
| 134 | 134 | 0.559 |
| 135 | 135 | 0.278 |
| 136 | 136 | 0.174 |
| 137 | 137 | 0.156 |
| 138 | 138 | 0.735 |
| 139 | 139 | 0.299 |
| 14 | 14 | 0.925 |
| 140 | 140 | 0.694 |
| 141 | 141 | 0.738 |
| 142 | 142 | 0.294 |
| 143 | 143 | 0.0322 |
| 144 | 144 | 0.426 |
| 145 | 145 | 0.0874 |
| 146 | 146 | 0.451 |
| 147 | 147 | 0.654 |
| 148 | 148 | 0.0054 |
| 149 | 149 | 0.125 |
| 15 | 15 | 0.116 |
| 150 | 150 | 0.19 |
| 151 | 151 | 0.508 |
| 152 | 152 | 0.0575 |
| 153 | 153 | 0.873 |
| 154 | 154 | 0.891 |
| 155 | 155 | 0.983 |
| 156 | 156 | 0.77 |
| 157 | 157 | 0.452 |
| 158 | 158 | 0.0923 |
| 159 | 159 | 0.0153 |
| 16 | 16 | 0.108 |
| 160 | 160 | 0.0522 |
| 161 | 161 | 0.337 |
| 162 | 162 | 0.899 |
| 163 | 163 | 0.753 |
| 164 | 164 | 0.145 |
| 165 | 165 | 0.245 |
| 166 | 166 | 0.964 |
| 167 | 167 | 0.911 |
| 168 | 168 | 0.122 |
| 169 | 169 | 0.00743 |
| 17 | 17 | 0.0467 |
| 18 | 18 | 0.0693 |
| 19 | 19 | 0.144 |
| 2 | 2 | 0.68 |
| 20 | 20 | 0.652 |
| 21 | 21 | 0.0816 |
| 22 | 22 | 0.148 |
| 23 | 23 | 0.0834 |
| 24 | 24 | 0.212 |
| 25 | 25 | 0.733 |
| 26 | 26 | 0.00383 |
| 27 | 27 | 0.459 |
| 28 | 28 | 0.793 |
| 29 | 29 | 0.0341 |
| 3 | 3 | 0.113 |
| 30 | 30 | 0.836 |
| 31 | 31 | 0.769 |
| 32 | 32 | 0.00886 |
| 33 | 33 | 0.156 |
| 34 | 34 | 0.496 |
| 35 | 35 | 0.395 |
| 36 | 36 | 0.0943 |
| 37 | 37 | 0.0639 |
| 38 | 38 | 0.194 |
| 39 | 39 | 0.188 |
| 4 | 4 | 0.758 |
| 40 | 40 | 0.065 |
| 41 | 41 | 0.192 |
| 42 | 42 | 0.381 |
| 43 | 43 | 0.102 |
| 44 | 44 | 0.0407 |
| 45 | 45 | 0.659 |
| 46 | 46 | 0.0424 |
| 47 | 47 | 0.0997 |
| 48 | 48 | 0.0951 |
| 49 | 49 | 0.147 |
| 5 | 5 | 0.372 |
| 50 | 50 | 0.332 |
| 51 | 51 | 0.285 |
| 52 | 52 | 0.194 |
| 53 | 53 | 0.94 |
| 54 | 54 | 0.33 |
| 55 | 55 | 0.651 |
| 56 | 56 | 0.558 |
| 57 | 57 | 0.203 |
| 58 | 58 | 0.507 |
| 59 | 59 | 0.0309 |
| 6 | 6 | 0.587 |
| 60 | 60 | 0.0301 |
| 61 | 61 | 0.166 |
| 62 | 62 | 0.176 |
| 63 | 63 | 0.0574 |
| 64 | 64 | 0.187 |
| 65 | 65 | 0.081 |
| 66 | 66 | 0.362 |
| 67 | 67 | 0.309 |
| 68 | 68 | 0.945 |
| 69 | 69 | 0.216 |
| 7 | 7 | 0.172 |
| 70 | 70 | 0.0365 |
| 71 | 71 | 0.0271 |
| 72 | 72 | 0.767 |
| 73 | 73 | 0.0621 |
| 74 | 74 | 0.282 |
| 75 | 75 | 0.0733 |
| 76 | 76 | 0.601 |
| 77 | 77 | 0.118 |
| 78 | 78 | 0.0212 |
| 79 | 79 | 0.374 |
| 8 | 8 | 0.0321 |
| 80 | 80 | 0.862 |
| 81 | 81 | 0.254 |
| 82 | 82 | 0.258 |
| 83 | 83 | 0.152 |
| 84 | 84 | 0.496 |
| 85 | 85 | 0.0474 |
| 86 | 86 | 0.305 |
| 87 | 87 | 0.00305 |
| 88 | 88 | 0.667 |
| 89 | 89 | 0.254 |
| 9 | 9 | 0.328 |
| 90 | 90 | 0.0906 |
| 91 | 91 | 0.523 |
| 92 | 92 | 0.447 |
| 93 | 93 | 0.792 |
| 94 | 94 | 0.114 |
| 95 | 95 | 0.0576 |
| 96 | 96 | 0.459 |
| 97 | 97 | 0.884 |
| 98 | 98 | 0.261 |
| 99 | 99 | 0.289 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12229
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0010162 human pituitary gland - adult sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0000007 (pituitary gland)
0001894 (diencephalon)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0003296 (gland of diencephalon)
0010133 (neuroendocrine gland)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002368 (endocrine gland)
0002616 (regional part of brain)
0002780 (regional part of forebrain)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001890 (forebrain)
0000949 (endocrine system)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010162 (human pituitary gland - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)
