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{{f5samples
{{f5samples
|id=FF:10166-103B4
|DRA_sample_Accession=CAGE@SAMD00004727
|name=cerebellum, adult, donor10252
|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00004727
|sample_id=10166
|HumanCAGEScanFiles=NCig10037;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/cerebellum%252c%2520adult%252c%2520donor10252.NCig10037.10166-103B4.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/cerebellum%252c%2520adult%252c%2520donor10252.NCig10037.10166-103B4.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/cerebellum%252c%2520adult%252c%2520donor10252.NCig10037.10166-103B4.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/cerebellum%252c%2520adult%252c%2520donor10252.NCig10037.10166-103B4.hg19.GCTATA.pairs.bed.gz
|rna_tube_id=103B4
|accession_numbers=CAGE;DRX008632;DRR009504;DRZ000929;DRZ002314;DRZ012279;DRZ013664
|rna_box=103
|accession_numbers_RNASeq=RNA-Seq;DRX057156;DRR062915;DRZ007991
|rna_position=B4
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0002037,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002680,UBERON:0002616,UBERON:0004733,UBERON:0004732,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001895,UBERON:0002028
|sample_cell_lot=NA
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003
|sample_cell_catalog=NA
|sample_company=
|rna_lot_number=
|rna_catalog_number=
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_dev_stage=
|sample_tissue=cerebellum
|sample_donor(cell lot)=donor: 10252
|sample_sex=female
|sample_age=76
|sample_ethnicity=
|rna_rin=
|rna_od260/230=2.3
|rna_od260/280=2.09
|sample_cell_type=CELL MIXTURE - tissue sample
|sample_cell_line=
|sample_collaboration=Peter Heutink
|sample_experimental_condition=
|sample_disease=
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=62.007
|rna_concentration=0.82676
|sample_note=
|profile_hcage=CNhs12323,LSID913,release011,COMPLETED
|profile_cagescan=NCig10037,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=
|ancestors_in_anatomy_facet=UBERON:0000025,UBERON:0000033,UBERON:0000061,UBERON:0000062,UBERON:0000063,UBERON:0000064,UBERON:0000073,UBERON:0000153,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000477,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000922,UBERON:0000923,UBERON:0000924,UBERON:0000955,UBERON:0001016,UBERON:0001017,UBERON:0001049,UBERON:0001062,UBERON:0001895,UBERON:0002028,UBERON:0002037,UBERON:0002050,UBERON:0002346,UBERON:0002532,UBERON:0002616,UBERON:0002680,UBERON:0003057,UBERON:0003075,UBERON:0003076,UBERON:0004121,UBERON:0004732,UBERON:0004733,UBERON:0005068,UBERON:0005423,UBERON:0005743,UBERON:0006598,UBERON:0007023,UBERON:0007135,UBERON:0007284
|ancestors_in_disease_facet=
|ancestors_in_disease_facet=
|sample_description=
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010083
|comment=
|created_by=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
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5307,-!p3@NEUROD1!1.39!23.33!NEUROD1;;chr3:147110055..147110129,-!p1@ZIC4!1.39!23.33!ZIC4;;chr5:178368186..178368238,+!p1@ZNF454!1.38!41.02!ZNF454;;chr2:223163706..223163730,-!p1@PAX3!1.38!23.11!PAX3;;chr13:100623375..100623425,-!p1@ZIC5!1.37!22.34!ZIC5;;chr1:61547894..61547968,+!p2@NFIA!1.36!62.48!NFIA;;chr2:185463247..185463263,+!p1@ZNF804A!1.36!38.48!ZNF804A;;chr22:41763452..41763466,+!p2@TEF!1.36!22.12!TEF;;chr14:58797974..58798011,+!p3@ARID4A!1.36!21.89!ARID4A;;chr11:125034640..125034655,+!p1@PKNOX2!1.36!21.67!PKNOX2;;chr19:58629742..58629787,-!p2@ZSCAN18!1.35!21.34!ZSCAN18;;chr2:2328299..2328363,-!p3@MYT1L!1.35!21.23!MYT1L;;chr2:100721328..100721348,-!p4@AFF3!1.34!21.01!AFF3;;chr11:31832581..31832601,-!p7@PAX6!1.34!20.90!PAX6;;chr1:42384532..42384603,-!p2@HIVEP3!1.34!20.68!HIVEP3;;chr1:61548374..61548415,+!p4@NFIA!1.33!37.15!NFIA;;chr2:100721281..100721307,-!p5@AFF3!1.33!20.24!AFF3;;chr15:61521462..61521482,-!p4@RORA!1.32!20.01!RORA;;chr14:24020938..24020988,-!p1@ZFHX2!1.31!27.98!ZFHX2;;chr8:93107696..93107716,-!p8@RUNX1T1!1.31!19.57!RUNX1T1;;chr8:106330823..106330836,+!p3@ZFPM2!1.31!19.24!ZFPM2;;chr17:38256822..38256851,-!p1@NR1D1!1.30!145.74!NR1D1;;chr9:3525910..3525955,-!p4@RFX3!1.30!55.62!RFX3;;chr13:100624012..100624026,-!p3@ZIC5!1.30!18.80!ZIC5;;chr9:3525968..3526016,-!p1@RFX3!1.29!104.72!RFX3;;chr5:158526917..158526932,-!p1@EBF1!1.29!45.67!EBF1;;chr3:141103634..141103665,+!p18@ZBTB38!1.29!18.69!ZBTB38;;chr1:8585945..8586056,-!p3@RERE!1.28!60.16!RERE;;chr2:145277882..145277967,-!p3@ZEB2!1.28!31.29!ZEB2;;chr3:126076242..126076257,-!p1@KLF15!1.28!22.34!KLF15;;chr3:114173859..114173873,-!p15@ZBTB20!1.28!17.91!ZBTB20;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.28!17.91!ZBED1;;chr12:54779511..54779577,-!p5@ZNF385A!1.27!17.69!ZNF385A;;chr5:170736216..170736238,+!p2@TLX3!1.27!17.58!TLX3;;chrX:136648297..136648319,+!p3@ZIC3!1.26!17.14!ZIC3;;chr18:22932004..22932021,-!p2@ZNF521!1.26!17.14!ZNF521;;chr21:34398234..34398250,+!p1@OLIG2!1.26!17.14!OLIG2;;chr15:31618903..31618962,+!p3@KLF13!1.25!45.67!KLF13;;chr3:114477934..114477961,-!p14@ZBTB20!1.25!16.81!ZBTB20;;chr9:3525867..3525902,-!p3@RFX3!1.24!56.51!RFX3;;chr18:47814186..47814232,-!p2@CXXC1!1.24!33.51!CXXC1;;chr2:74229812..74229867,+!p1@TET3!1.23!39.81!TET3;;chr6:143266185..143266238,-!p2@HIVEP2!1.23!21.89!HIVEP2;;chr3:147111505..147111529,+!p6@ZIC1!1.23!16.14!ZIC1;;chr11:31832687..31832704,-!p6@PAX6!1.23!16.14!PAX6;;chr14:21994525..21994547,-!p4@SALL2!1.23!15.92!SALL2;;chr20:20348740..20348757,+!p1@INSM1!1.23!15.92!INSM1;;chr1:244214611..244214624,+!p4@ZNF238!1.23!15.81!ZNF238;;chr2:180726058..180726098,-!p3@ZNF385B!1.23!15.81!ZNF385B;;chr3:187463248..187463264,-!p1@BCL6!1.22!326.21!BCL6;;chr2:178128250..178128293,-!p6@NFE2L2!1.22!38.70!NFE2L2;;chr3:181429741..181429767,+!p2@SOX2!1.22!15.70!SOX2;;chr7:63505799..63505904,+!p1@ZNF727!1.22!15.59!ZNF727;;chr13:100638100..100638115,+!p4@ZIC2!1.22!15.59!ZIC2;;chr3:147111231..147111281,+!p3@ZIC1!1.22!15.48!ZIC1;;chr14:21994337..21994442,-!p1@SALL2!1.21!41.36!SALL2;;chr19:53496768..53496799,-!p1@ZNF702P!1.21!23.44!ZNF702P;;chr11:125034605..125034636,+!p2@PKNOX2!1.21!15.37!PKNOX2;;chr2:2328725..2328739,-!p5@MYT1L!1.21!15.04!MYT1L;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.20!14.71!POU3F3;;chr16:4323246..4323299,-!p5@TFAP4!1.20!14.71!TFAP4;;chr1:151804244..151804310,-!p1@RORC!1.19!14.60!RORC;;chr3:147110145..147110180,-!p4@ZIC4!1.19!14.49!ZIC4;;chr14:33403648..33403710,+!p3@NPAS3!1.19!14.49!NPAS3;;chr6:28321827..28321856,-!p5@ZNF323!1.19!14.38!ZNF323;;chr17:70117153..70117174,+!p1@SOX9!1.18!142.43!SOX9;;chr9:2015275..2015287,+!p8@SMARCA2!1.18!22.67!SMARCA2;;chr19:13136130..13136165,+!p6@NFIX!1.18!18.91!NFIX;;chr2:113057415..113057477,+!p3@ZC3H6!1.18!18.25!ZC3H6;;chr12:125003087..125003141,-!p4@NCOR2!1.18!18.13!NCOR2;;chr6:28321909..28321965,-!p3@ZNF323!1.18!14.26!ZNF323;;chr14:33403881..33403924,+!p1@NPAS3!1.18!14.15!NPAS3;;chr1:8877692..8877732,-!p1@RERE!1.17!110.25!RERE;;chr6:19837592..19837621,+!p1@ID4!1.17!84.04!ID4;;chr9:73029219..73029289,-!p2@KLF9!1.17!41.25!KLF9;;chr9:77112244..77112262,+!p1@RORB!1.17!15.59!RORB;;chr19:57183114..57183145,-!p1@ZNF835!1.17!15.59!ZNF835;;chr12:106976774..106976788,+!p1@RFX4!1.17!13.82!RFX4;;chr8:93115274..93115323,-!p4@RUNX1T1!1.17!13.71!RUNX1T1;;chr9:109625401..109625458,+!p1@ZNF462!1.16!35.39!ZNF462;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!1.16!28.42!ZNF395;;chr2:214016314..214016343,-!p2@IKZF2!1.16!22.56!IKZF2;;chr7:64023410..64023428,-!p2@ZNF680!1.16!21.34!ZNF680;;chr18:52989081..52989117,-!p7@TCF4!1.16!20.57!TCF4;;chr10:48355030..48355090,+!p1@ZNF488!1.16!17.36!ZNF488;;chr1:61548118..61548129,+!p9@NFIA!1.16!15.15!NFIA;;chr11:125034586..125034604,+!p3@PKNOX2!1.16!13.49!PKNOX2;;chr8:145560111..145560165,-!p2@SCRT1!1.16!13.49!SCRT1;;chr8:53166916..53166925,-!p10@ST18!1.16!13.38!ST18;;chr7:64023441..64023462,-!p1@ZNF680!1.15!104.50!ZNF680;;chr8:30890810..30890880,-!p1@PURG!1.15!13.16!PURG;;chr8:53162037..53162058,-!p5@ST18!1.15!13.05!ST18;;chr2:17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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001895;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002028;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002037
|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0006215,UBERON:0010316
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 66: Line 44:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
|top_motifs=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/cerebellum%252c%2520adult%252c%2520donor10252.CNhs12323.10166-103B4.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/cerebellum%252c%2520adult%252c%2520donor10252.CNhs12323.10166-103B4.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/cerebellum%252c%2520adult%252c%2520donor10252.CNhs12323.10166-103B4.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/cerebellum%252c%2520adult%252c%2520donor10252.CNhs12323.10166-103B4.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/cerebellum%252c%2520adult%252c%2520donor10252.CNhs12323.10166-103B4.hg38.nobarcode.ctss.bed.gz
|id=FF:10166-103B4
|is_a=EFO:0002091;;FF:0000002;;FF:0010083
|is_obsolete=
|library_id=CNhs12323
|library_id_phase_based=2:CNhs12323
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10166
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10166
|name=cerebellum, adult, donor10252
|namespace=
|part_of=
|profile_cagescan=NCig10037,,,
|profile_hcage=CNhs12323,LSID913,release011,COMPLETED
|profile_rnaseq=
|profile_srnaseq=,,,
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|rna_box=103
|rna_catalog_number=
|rna_concentration=0.82676
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=2.3
|rna_od260/280=2.09
|rna_position=B4
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=103B4
|rna_weight_ug=62.007
|rnaseq_library_id=RDhi10099
|sample_age=76
|sample_category=tissues
|sample_cell_catalog=NA
|sample_cell_line=
|sample_cell_lot=NA
|sample_cell_type=CELL MIXTURE - tissue sample
|sample_collaboration=Peter Heutink
|sample_company=
|sample_description=
|sample_dev_stage=
|sample_disease=
|sample_donor(cell lot)=donor: 10252
|sample_ethnicity=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.17341694531386e-233!GO:0043226;organelle;4.00791083837814e-138!GO:0043229;intracellular organelle;1.45614366113409e-137!GO:0043227;membrane-bound organelle;2.56223539953973e-134!GO:0043231;intracellular membrane-bound organelle;3.21348494147344e-134!GO:0005737;cytoplasm;2.43664888254963e-117!GO:0044444;cytoplasmic part;8.75307449013885e-69!GO:0005634;nucleus;2.34956223537774e-66!GO:0044422;organelle part;1.1227073366796e-64!GO:0044446;intracellular organelle part;9.86141981991639e-64!GO:0005515;protein binding;2.53459670117657e-63!GO:0032991;macromolecular complex;1.46412470817843e-56!GO:0043170;macromolecule metabolic process;3.20998734411559e-47!GO:0044428;nuclear part;3.40883620044667e-46!GO:0016043;cellular component organization and biogenesis;4.06240071861513e-45!GO:0044238;primary metabolic process;2.45140806510486e-44!GO:0044237;cellular metabolic process;3.36004607152766e-42!GO:0003723;RNA binding;9.73731239328225e-42!GO:0043283;biopolymer metabolic process;8.37175264417548e-41!GO:0043233;organelle lumen;1.15444638545133e-39!GO:0031974;membrane-enclosed lumen;1.15444638545133e-39!GO:0033036;macromolecule localization;1.82247319746887e-39!GO:0015031;protein transport;1.17343135587733e-37!GO:0008104;protein localization;4.6008578926949e-35!GO:0045184;establishment of protein localization;4.19994681528276e-34!GO:0010467;gene expression;2.04478939405225e-33!GO:0030529;ribonucleoprotein complex;2.72172290777274e-33!GO:0043234;protein complex;1.24240974771641e-32!GO:0016071;mRNA metabolic process;4.21906031716548e-32!GO:0031981;nuclear lumen;4.21164751074769e-30!GO:0046907;intracellular transport;7.11780592052495e-30!GO:0006396;RNA processing;3.28340640535528e-29!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;9.67186345706578e-28!GO:0031090;organelle membrane;4.16700270584432e-27!GO:0008380;RNA splicing;7.27825969909985e-27!GO:0051649;establishment of cellular localization;1.40975074338463e-26!GO:0005739;mitochondrion;3.65470416453491e-26!GO:0051641;cellular localization;7.00252931820923e-26!GO:0006397;mRNA processing;7.17752457349319e-26!GO:0016070;RNA metabolic process;5.04088650626502e-25!GO:0016192;vesicle-mediated transport;5.7201460687701e-24!GO:0006886;intracellular protein transport;1.9296869697516e-23!GO:0006996;organelle organization and biogenesis;5.55551751784598e-23!GO:0005654;nucleoplasm;1.40494006249366e-22!GO:0019538;protein metabolic process;9.60715109201807e-22!GO:0003676;nucleic acid binding;3.25381389173133e-21!GO:0044451;nucleoplasm part;3.82911537978017e-21!GO:0031967;organelle envelope;2.76316486556453e-20!GO:0031975;envelope;2.93151014973568e-20!GO:0000166;nucleotide binding;4.09860579420068e-19!GO:0006512;ubiquitin cycle;2.21098570343445e-18!GO:0005794;Golgi apparatus;2.45801825713054e-18!GO:0065003;macromolecular complex assembly;2.9119660894099e-18!GO:0044267;cellular protein metabolic process;4.43251698473444e-18!GO:0044429;mitochondrial part;4.8375303474871e-18!GO:0005681;spliceosome;5.27148479270299e-18!GO:0044260;cellular macromolecule metabolic process;5.3624782145413e-18!GO:0022607;cellular component assembly;1.97104057299326e-16!GO:0005829;cytosol;2.61426019426621e-16!GO:0006119;oxidative phosphorylation;1.68537993988384e-15!GO:0008134;transcription factor binding;7.38305367416836e-15!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;8.57433406130341e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;1.02154689450829e-14!GO:0016462;pyrophosphatase activity;1.02154689450829e-14!GO:0017111;nucleoside-triphosphatase activity;1.02154689450829e-14!GO:0043412;biopolymer modification;1.03837559579893e-14!GO:0043687;post-translational protein modification;2.35345497605587e-14!GO:0005840;ribosome;2.3687390363783e-14!GO:0016874;ligase activity;4.31319040671395e-14!GO:0031982;vesicle;1.34925567074404e-13!GO:0006464;protein modification process;1.7601095088978e-13!GO:0016604;nuclear body;2.86002050140616e-13!GO:0032553;ribonucleotide binding;3.174467931238e-13!GO:0032555;purine ribonucleotide binding;3.174467931238e-13!GO:0031410;cytoplasmic vesicle;5.10290331401366e-13!GO:0019866;organelle inner membrane;5.93641206129979e-13!GO:0031966;mitochondrial membrane;8.40270618233739e-13!GO:0016607;nuclear speck;1.05488951287216e-12!GO:0006412;translation;1.07336712931599e-12!GO:0005740;mitochondrial envelope;1.25989921318543e-12!GO:0050794;regulation of cellular process;1.5292178567535e-12!GO:0006511;ubiquitin-dependent protein catabolic process;2.12582309816094e-12!GO:0031988;membrane-bound vesicle;2.62435388492121e-12!GO:0051603;proteolysis involved in cellular protein catabolic process;2.8032893196165e-12!GO:0006325;establishment and/or maintenance of chromatin architecture;3.16314069704629e-12!GO:0019941;modification-dependent protein catabolic process;3.68680450828454e-12!GO:0043632;modification-dependent macromolecule catabolic process;3.68680450828454e-12!GO:0017076;purine nucleotide binding;3.87350362247296e-12!GO:0045045;secretory pathway;3.8882251993119e-12!GO:0048193;Golgi vesicle transport;4.93571114479986e-12!GO:0016568;chromatin modification;5.47301882781079e-12!GO:0006259;DNA metabolic process;5.76064023855927e-12!GO:0044257;cellular protein catabolic process;7.88450519932689e-12!GO:0016023;cytoplasmic membrane-bound vesicle;8.64407981486718e-12!GO:0006457;protein folding;9.96197333803798e-12!GO:0012505;endomembrane system;1.16191643103188e-11!GO:0005743;mitochondrial inner membrane;1.79841945208706e-11!GO:0050789;regulation of biological process;3.09401297678587e-11!GO:0006323;DNA packaging;3.2326426621433e-11!GO:0044265;cellular macromolecule catabolic process;5.21173269155256e-11!GO:0043228;non-membrane-bound organelle;9.39449714767011e-11!GO:0043232;intracellular non-membrane-bound organelle;9.39449714767011e-11!GO:0003735;structural constituent of ribosome;1.16018882453771e-10!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.19375933480327e-10!GO:0044455;mitochondrial membrane part;1.23063210742139e-10!GO:0050136;NADH dehydrogenase (quinone) activity;1.78815390003877e-10!GO:0003954;NADH dehydrogenase activity;1.78815390003877e-10!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.78815390003877e-10!GO:0008270;zinc ion binding;1.85029843236155e-10!GO:0005746;mitochondrial respiratory chain;3.29103928871174e-10!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.67866057055789e-10!GO:0008135;translation factor activity, nucleic acid binding;5.10366056213296e-10!GO:0003712;transcription cofactor activity;5.10366056213296e-10!GO:0006605;protein targeting;7.38926132253854e-10!GO:0032559;adenyl ribonucleotide binding;7.98494718860343e-10!GO:0048770;pigment granule;1.2583682843973e-09!GO:0042470;melanosome;1.2583682843973e-09!GO:0005524;ATP binding;1.52139580970961e-09!GO:0031965;nuclear membrane;1.63313349317246e-09!GO:0005083;small GTPase regulator activity;2.23118767231939e-09!GO:0022618;protein-RNA complex assembly;2.51837910089061e-09!GO:0043285;biopolymer catabolic process;2.70477888425074e-09!GO:0051082;unfolded protein binding;2.85978415578752e-09!GO:0009059;macromolecule biosynthetic process;4.29186423079851e-09!GO:0019222;regulation of metabolic process;4.43583238805644e-09!GO:0044431;Golgi apparatus part;4.56397481913966e-09!GO:0030163;protein catabolic process;5.00054712114116e-09!GO:0030695;GTPase regulator activity;5.05487781873979e-09!GO:0030964;NADH dehydrogenase complex (quinone);5.97842091658815e-09!GO:0045271;respiratory chain complex I;5.97842091658815e-09!GO:0005747;mitochondrial respiratory chain complex I;5.97842091658815e-09!GO:0008565;protein transporter activity;6.78830207537215e-09!GO:0051276;chromosome organization and biogenesis;7.07078812032615e-09!GO:0007264;small GTPase mediated signal transduction;7.15752522088561e-09!GO:0008639;small protein conjugating enzyme activity;7.23262187043252e-09!GO:0004842;ubiquitin-protein ligase activity;7.55277639747751e-09!GO:0006913;nucleocytoplasmic transport;7.74333529423098e-09!GO:0042775;organelle ATP synthesis coupled electron transport;7.78234590877354e-09!GO:0042773;ATP synthesis coupled electron transport;7.78234590877354e-09!GO:0030554;adenyl nucleotide binding;9.35357870895334e-09!GO:0033279;ribosomal subunit;1.48241936757708e-08!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.59620128401133e-08!GO:0051169;nuclear transport;1.67091949683859e-08!GO:0019787;small conjugating protein ligase activity;1.7555080793765e-08!GO:0005635;nuclear envelope;2.30799883386795e-08!GO:0015630;microtubule cytoskeleton;2.3761211708446e-08!GO:0032940;secretion by cell;3.4284010765459e-08!GO:0006793;phosphorus metabolic process;3.55948060714382e-08!GO:0006796;phosphate metabolic process;3.55948060714382e-08!GO:0019899;enzyme binding;3.97481423615109e-08!GO:0019829;cation-transporting ATPase activity;4.20657186616111e-08!GO:0030135;coated vesicle;4.21109528937521e-08!GO:0000398;nuclear mRNA splicing, via spliceosome;4.40628043365486e-08!GO:0000375;RNA splicing, via transesterification reactions;4.40628043365486e-08!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.40628043365486e-08!GO:0006350;transcription;4.71987729793842e-08!GO:0009057;macromolecule catabolic process;4.74534448383114e-08!GO:0016887;ATPase activity;7.5597090210383e-08!GO:0031980;mitochondrial lumen;8.71106654671146e-08!GO:0005759;mitochondrial matrix;8.71106654671146e-08!GO:0006461;protein complex assembly;1.02086224493871e-07!GO:0044445;cytosolic part;1.22969583753936e-07!GO:0006403;RNA localization;1.49245075937133e-07!GO:0008287;protein serine/threonine phosphatase complex;1.70441831599792e-07!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.02698436003076e-07!GO:0009058;biosynthetic process;2.59616510995979e-07!GO:0006366;transcription from RNA polymerase II promoter;2.92815391361997e-07!GO:0032774;RNA biosynthetic process;3.0166766715334e-07!GO:0050657;nucleic acid transport;3.28543803932113e-07!GO:0051236;establishment of RNA localization;3.28543803932113e-07!GO:0050658;RNA transport;3.28543803932113e-07!GO:0006351;transcription, DNA-dependent;3.30636286242624e-07!GO:0008092;cytoskeletal protein binding;4.02804577749779e-07!GO:0003924;GTPase activity;4.19588664526266e-07!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.50815425156596e-07!GO:0042623;ATPase activity, coupled;5.10293016710212e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.43309686667818e-07!GO:0010468;regulation of gene expression;6.44296246868848e-07!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.82689920605959e-07!GO:0015631;tubulin binding;7.81453401664095e-07!GO:0005730;nucleolus;8.09224452601089e-07!GO:0006810;transport;8.12013806899342e-07!GO:0016881;acid-amino acid ligase activity;8.86809196558265e-07!GO:0005768;endosome;9.07938671054193e-07!GO:0031323;regulation of cellular metabolic process;9.21736038992863e-07!GO:0016564;transcription repressor activity;1.04043570396517e-06!GO:0007010;cytoskeleton organization and biogenesis;1.07000378448987e-06!GO:0048523;negative regulation of cellular process;1.09848384735003e-06!GO:0044248;cellular catabolic process;1.19846155668947e-06!GO:0016310;phosphorylation;1.23253143620842e-06!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.29805984227318e-06!GO:0046914;transition metal ion binding;1.33860991063765e-06!GO:0065007;biological regulation;1.60476517441952e-06!GO:0044453;nuclear membrane part;1.69029762719465e-06!GO:0000139;Golgi membrane;1.78935671919092e-06!GO:0048475;coated membrane;1.80530024863964e-06!GO:0030117;membrane coat;1.80530024863964e-06!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.02115369737462e-06!GO:0045449;regulation of transcription;2.12546906842933e-06!GO:0006446;regulation of translational initiation;2.20583719318323e-06!GO:0003713;transcription coactivator activity;2.3285130300911e-06!GO:0003743;translation initiation factor activity;2.46305102155178e-06!GO:0006355;regulation of transcription, DNA-dependent;2.58841375725541e-06!GO:0044249;cellular biosynthetic process;3.71332330779563e-06!GO:0019717;synaptosome;3.78680755420055e-06!GO:0015986;ATP synthesis coupled proton transport;4.20250104052497e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.20250104052497e-06!GO:0005874;microtubule;4.21719862107157e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.58922156297584e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;5.16386166593819e-06!GO:0008017;microtubule binding;5.49959081812849e-06!GO:0032446;protein modification by small protein conjugation;5.95629738543235e-06!GO:0000502;proteasome complex (sensu Eukaryota);6.72798612159456e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;7.07021399319506e-06!GO:0006413;translational initiation;7.12346001934615e-06!GO:0051028;mRNA transport;7.76236775027634e-06!GO:0005643;nuclear pore;1.05565208241149e-05!GO:0005769;early endosome;1.35731143348826e-05!GO:0005525;GTP binding;1.35977357249003e-05!GO:0004386;helicase activity;1.46932116112987e-05!GO:0051056;regulation of small GTPase mediated signal transduction;1.51589084411584e-05!GO:0030036;actin cytoskeleton organization and biogenesis;1.7192162191933e-05!GO:0016044;membrane organization and biogenesis;1.72955097348676e-05!GO:0009892;negative regulation of metabolic process;1.81020541970951e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;1.84834232212915e-05!GO:0017038;protein import;1.99633154961829e-05!GO:0016481;negative regulation of transcription;2.04686744291034e-05!GO:0016567;protein ubiquitination;2.08561932545593e-05!GO:0015935;small ribosomal subunit;2.25596259292335e-05!GO:0045786;negative regulation of progression through cell cycle;2.36225656670906e-05!GO:0048519;negative regulation of biological process;2.73035067420653e-05!GO:0043566;structure-specific DNA binding;2.96571511235297e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;3.1104989079267e-05!GO:0000151;ubiquitin ligase complex;3.2123053019971e-05!GO:0006333;chromatin assembly or disassembly;4.42487941362113e-05!GO:0044440;endosomal part;4.49772877392417e-05!GO:0010008;endosome membrane;4.49772877392417e-05!GO:0048471;perinuclear region of cytoplasm;4.83488519202684e-05!GO:0051234;establishment of localization;5.41182468587395e-05!GO:0030136;clathrin-coated vesicle;5.88818939283411e-05!GO:0007049;cell cycle;6.32063185768476e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;7.69616590764075e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.69616590764075e-05!GO:0006754;ATP biosynthetic process;7.84103072838929e-05!GO:0006753;nucleoside phosphate metabolic process;7.84103072838929e-05!GO:0007265;Ras protein signal transduction;7.91753902624088e-05!GO:0003714;transcription corepressor activity;8.79464161504245e-05!GO:0006974;response to DNA damage stimulus;9.11532798036831e-05!GO:0016469;proton-transporting two-sector ATPase complex;9.63398335978054e-05!GO:0048489;synaptic vesicle transport;0.00010987999454788!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000118099979592804!GO:0006888;ER to Golgi vesicle-mediated transport;0.000122405517260287!GO:0004674;protein serine/threonine kinase activity;0.000124341951140452!GO:0009060;aerobic respiration;0.000130417232663637!GO:0045892;negative regulation of transcription, DNA-dependent;0.000132484216747441!GO:0006606;protein import into nucleus;0.000137755039956282!GO:0008026;ATP-dependent helicase activity;0.000155001367974326!GO:0005905;coated pit;0.000156354257288889!GO:0030029;actin filament-based process;0.000158817201489897!GO:0016197;endosome transport;0.000160559852407726!GO:0031324;negative regulation of cellular metabolic process;0.000162778822538196!GO:0003729;mRNA binding;0.00016875598151949!GO:0051179;localization;0.00017155576308628!GO:0032561;guanyl ribonucleotide binding;0.000178362020635411!GO:0019001;guanyl nucleotide binding;0.000178362020635411!GO:0016740;transferase activity;0.000178362020635411!GO:0046034;ATP metabolic process;0.000183626488887773!GO:0045333;cellular respiration;0.000187939912690956!GO:0005798;Golgi-associated vesicle;0.000190264303552905!GO:0051128;regulation of cellular component organization and biogenesis;0.000191188243103703!GO:0000245;spliceosome assembly;0.000210128970815815!GO:0030120;vesicle coat;0.000215875482405558!GO:0030662;coated vesicle membrane;0.000215875482405558!GO:0006897;endocytosis;0.000217651244282575!GO:0010324;membrane invagination;0.000217651244282575!GO:0051170;nuclear import;0.000218052880989583!GO:0005783;endoplasmic reticulum;0.000248503300025826!GO:0043005;neuron projection;0.00027266236290691!GO:0015078;hydrogen ion transmembrane transporter activity;0.000289771607364736!GO:0045259;proton-transporting ATP synthase complex;0.000314219220249948!GO:0006402;mRNA catabolic process;0.000314219220249948!GO:0031252;leading edge;0.000315092843365248!GO:0005793;ER-Golgi intermediate compartment;0.000317892797768978!GO:0003724;RNA helicase activity;0.000328296690365265!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;0.0003626124897765!GO:0009145;purine nucleoside triphosphate biosynthetic process;0.0003626124897765!GO:0051186;cofactor metabolic process;0.000379941465142463!GO:0005096;GTPase activator activity;0.000379941465142463!GO:0016363;nuclear matrix;0.000393249350221003!GO:0005813;centrosome;0.000438265735187012!GO:0051427;hormone receptor binding;0.000459560871849875!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000465583613296866!GO:0015399;primary active transmembrane transporter activity;0.000465583613296866!GO:0043492;ATPase activity, coupled to movement of substances;0.00046981742747825!GO:0005770;late endosome;0.000477736746283311!GO:0009142;nucleoside triphosphate biosynthetic process;0.000485212650970413!GO:0009201;ribonucleoside triphosphate biosynthetic process;0.000485212650970413!GO:0016301;kinase activity;0.0004894874379784!GO:0031901;early endosome membrane;0.000493969541711589!GO:0006281;DNA repair;0.000495794576344868!GO:0007242;intracellular signaling cascade;0.000504748778369419!GO:0008047;enzyme activator activity;0.000511546174513499!GO:0043623;cellular protein complex assembly;0.000511546174513499!GO:0009205;purine ribonucleoside triphosphate metabolic process;0.000515028621453394!GO:0009144;purine nucleoside triphosphate metabolic process;0.000515028621453394!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);0.000584642646637688!GO:0003697;single-stranded DNA binding;0.000607347451158232!GO:0051168;nuclear export;0.000607347451158232!GO:0030118;clathrin coat;0.000607557063332999!GO:0015934;large ribosomal subunit;0.000616449217120947!GO:0007399;nervous system development;0.000617734085513583!GO:0006613;cotranslational protein targeting to membrane;0.000649303327123066!GO:0016563;transcription activator activity;0.000649303327123066!GO:0009199;ribonucleoside triphosphate metabolic process;0.000652426136774997!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000660616351153258!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.000662534364002631!GO:0004812;aminoacyl-tRNA ligase activity;0.000662534364002631!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.000662534364002631!GO:0051726;regulation of cell cycle;0.000744237419359762!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000805260259809647!GO:0035257;nuclear hormone receptor binding;0.000805260259809647!GO:0008286;insulin receptor signaling pathway;0.000904319156968371!GO:0051129;negative regulation of cellular component organization and biogenesis;0.000904319156968371!GO:0009141;nucleoside triphosphate metabolic process;0.000924615469024081!GO:0000159;protein phosphatase type 2A complex;0.000943435741142537!GO:0005815;microtubule organizing center;0.000970709239174986!GO:0005667;transcription factor complex;0.000991992351833531!GO:0006099;tricarboxylic acid cycle;0.00105268395647472!GO:0046356;acetyl-CoA catabolic process;0.00105268395647472!GO:0006892;post-Golgi vesicle-mediated transport;0.00110163519571219!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);0.00110163519571219!GO:0046930;pore complex;0.00114267805674903!GO:0019904;protein domain specific binding;0.00117690506411836!GO:0006338;chromatin remodeling;0.00121458341858273!GO:0046578;regulation of Ras protein signal transduction;0.00125602682998162!GO:0031072;heat shock protein binding;0.00125849953048752!GO:0051087;chaperone binding;0.00130080575224241!GO:0009109;coenzyme catabolic process;0.0013312416798612!GO:0000074;regulation of progression through cell cycle;0.00143024519539274!GO:0008022;protein C-terminus binding;0.0014505130271041!GO:0008601;protein phosphatase type 2A regulator activity;0.00147169230879431!GO:0043038;amino acid activation;0.00157265381948122!GO:0006418;tRNA aminoacylation for protein translation;0.00157265381948122!GO:0043039;tRNA aminoacylation;0.00157265381948122!GO:0009150;purine ribonucleotide metabolic process;0.00168289789383092!GO:0005938;cell cortex;0.00182246766015237!GO:0009056;catabolic process;0.00182304589541341!GO:0019783;small conjugating protein-specific protease activity;0.00182304589541341!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.0019141719152947!GO:0022890;inorganic cation transmembrane transporter activity;0.00195283160539068!GO:0016050;vesicle organization and biogenesis;0.00197639214370334!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.00197887186534764!GO:0004667;prostaglandin-D synthase activity;0.00197887186534764!GO:0050802;circadian sleep/wake cycle, sleep;0.00197887186534764!GO:0022410;circadian sleep/wake cycle process;0.00197887186534764!GO:0042749;regulation of circadian sleep/wake cycle;0.00197887186534764!GO:0009152;purine ribonucleotide biosynthetic process;0.00207684382533521!GO:0004843;ubiquitin-specific protease activity;0.00220258941573799!GO:0043087;regulation of GTPase activity;0.0022606784691949!GO:0030532;small nuclear ribonucleoprotein complex;0.00231545625006126!GO:0005761;mitochondrial ribosome;0.0024320035503022!GO:0000313;organellar ribosome;0.0024320035503022!GO:0009055;electron carrier activity;0.00250557916156532!GO:0006163;purine nucleotide metabolic process;0.00254939110134283!GO:0051261;protein depolymerization;0.00263243047358518!GO:0006732;coenzyme metabolic process;0.00279988657626391!GO:0008021;synaptic vesicle;0.0028351662652235!GO:0004221;ubiquitin thiolesterase activity;0.00287787622217651!GO:0019902;phosphatase binding;0.00292298555670256!GO:0030425;dendrite;0.00293128943351462!GO:0004722;protein serine/threonine phosphatase activity;0.00293496881187743!GO:0006891;intra-Golgi vesicle-mediated transport;0.00302691683533271!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.00303056723738728!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00305917561646147!GO:0065002;intracellular protein transport across a membrane;0.00309302226091482!GO:0006752;group transfer coenzyme metabolic process;0.00312743736192054!GO:0051246;regulation of protein metabolic process;0.00318971313215071!GO:0006612;protein targeting to membrane;0.00322856820171216!GO:0005085;guanyl-nucleotide exchange factor activity;0.0032385756174097!GO:0006164;purine nucleotide biosynthetic process;0.00328521479316537!GO:0006607;NLS-bearing substrate import into nucleus;0.00333159680179877!GO:0009259;ribonucleotide metabolic process;0.00339430523655281!GO:0006084;acetyl-CoA metabolic process;0.00372316697241556!GO:0007019;microtubule depolymerization;0.00375832848496138!GO:0009966;regulation of signal transduction;0.0037901307034964!GO:0003746;translation elongation factor activity;0.00466343020318868!GO:0003682;chromatin binding;0.00483487383033288!GO:0000059;protein import into nucleus, docking;0.00487383184115443!GO:0030133;transport vesicle;0.00487776028961277!GO:0032011;ARF protein signal transduction;0.00508035759155239!GO:0032012;regulation of ARF protein signal transduction;0.00508035759155239!GO:0030320;cellular monovalent inorganic anion homeostasis;0.00520504965148807!GO:0055083;monovalent inorganic anion homeostasis;0.00520504965148807!GO:0055064;chloride ion homeostasis;0.00520504965148807!GO:0030644;cellular chloride ion homeostasis;0.00520504965148807!GO:0051187;cofactor catabolic process;0.00523765256398431!GO:0008186;RNA-dependent ATPase activity;0.0053411216664705!GO:0016585;chromatin remodeling complex;0.00544008603559217!GO:0003690;double-stranded DNA binding;0.00546381501516906!GO:0044448;cell cortex part;0.00551526440022472!GO:0065004;protein-DNA complex assembly;0.00555236548224149!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00564003189626461!GO:0033673;negative regulation of kinase activity;0.00567171819944845!GO:0006469;negative regulation of protein kinase activity;0.00567171819944845!GO:0030027;lamellipodium;0.00572070473796514!GO:0003779;actin binding;0.00573105459182628!GO:0044432;endoplasmic reticulum part;0.00596127722248783!GO:0006383;transcription from RNA polymerase III promoter;0.00638811022962895!GO:0022402;cell cycle process;0.00652211953796884!GO:0045893;positive regulation of transcription, DNA-dependent;0.00677452364478577!GO:0009260;ribonucleotide biosynthetic process;0.0070710209546583!GO:0030132;clathrin coat of coated pit;0.00711752451263854!GO:0016311;dephosphorylation;0.00714787048609891!GO:0051188;cofactor biosynthetic process;0.00714787048609891!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00714787048609891!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00714787048609891!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00714787048609891!GO:0003711;transcription elongation regulator activity;0.00732203471676238!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00747697258485894!GO:0030426;growth cone;0.00759048940232446!GO:0035258;steroid hormone receptor binding;0.00794222812935319!GO:0022406;membrane docking;0.00805477299494254!GO:0048278;vesicle docking;0.00805477299494254!GO:0008154;actin polymerization and/or depolymerization;0.00805477299494254!GO:0030427;site of polarized growth;0.00807080023978371!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00832742465300199!GO:0005099;Ras GTPase activator activity;0.00873011267845028!GO:0006401;RNA catabolic process;0.00879393854235287!GO:0031114;regulation of microtubule depolymerization;0.00891573483527478!GO:0007026;negative regulation of microtubule depolymerization;0.00891573483527478!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.00893556178843196!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0089378356717424!GO:0008276;protein methyltransferase activity;0.0089378356717424!GO:0006904;vesicle docking during exocytosis;0.00901732771298344!GO:0004721;phosphoprotein phosphatase activity;0.00905679860341356!GO:0006730;one-carbon compound metabolic process;0.00907117071059118!GO:0007269;neurotransmitter secretion;0.00909497650086157!GO:0003702;RNA polymerase II transcription factor activity;0.0092008350079598!GO:0048167;regulation of synaptic plasticity;0.00924033339812425!GO:0005791;rough endoplasmic reticulum;0.0094257515357051!GO:0046488;phosphatidylinositol metabolic process;0.00946057851989401!GO:0030742;GTP-dependent protein binding;0.00987278943723712!GO:0030258;lipid modification;0.00996489681569202!GO:0048487;beta-tubulin binding;0.0102979133622271!GO:0050811;GABA receptor binding;0.0109365748741182!GO:0003677;DNA binding;0.0111246479972992!GO:0030867;rough endoplasmic reticulum membrane;0.0112186665388157!GO:0016569;covalent chromatin modification;0.0115176321674078!GO:0032318;regulation of Ras GTPase activity;0.0121673527949187!GO:0006260;DNA replication;0.0127020832188484!GO:0000118;histone deacetylase complex;0.0130774502498473!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.0134019255724202!GO:0005086;ARF guanyl-nucleotide exchange factor activity;0.0136035725806063!GO:0050803;regulation of synapse structure and activity;0.0137343718049665!GO:0004004;ATP-dependent RNA helicase activity;0.0137718567158006!GO:0019208;phosphatase regulator activity;0.0139159202097231!GO:0007017;microtubule-based process;0.0139159202097231!GO:0009108;coenzyme biosynthetic process;0.0139159202097231!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0142727178620103!GO:0033043;regulation of organelle organization and biogenesis;0.0142727178620103!GO:0051348;negative regulation of transferase activity;0.014376990711095!GO:0042026;protein refolding;0.0148116285931099!GO:0008654;phospholipid biosynthetic process;0.0149745864285417!GO:0005875;microtubule associated complex;0.0150861706466668!GO:0042254;ribosome biogenesis and assembly;0.0150861706466668!GO:0048500;signal recognition particle;0.0154179563776532!GO:0030658;transport vesicle membrane;0.0156682466705944!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0157889307752939!GO:0004183;carboxypeptidase E activity;0.0160406411085144!GO:0030070;insulin processing;0.0160406411085144!GO:0016584;nucleosome positioning;0.0160580932744328!GO:0032259;methylation;0.016113048091543!GO:0030119;AP-type membrane coat adaptor complex;0.0163323651385147!GO:0030518;steroid hormone receptor signaling pathway;0.0163328396169701!GO:0016570;histone modification;0.016566740224025!GO:0030384;phosphoinositide metabolic process;0.0167897455426083!GO:0008139;nuclear localization sequence binding;0.0169340634652808!GO:0008219;cell death;0.0169547074386822!GO:0016265;death;0.0169547074386822!GO:0035035;histone acetyltransferase binding;0.017062380096041!GO:0045603;positive regulation of endothelial cell differentiation;0.017112519697082!GO:0006887;exocytosis;0.017112519697082!GO:0051540;metal cluster binding;0.0171253861782143!GO:0051536;iron-sulfur cluster binding;0.0171253861782143!GO:0006650;glycerophospholipid metabolic process;0.0171678755933883!GO:0045664;regulation of neuron differentiation;0.017330625865926!GO:0016790;thiolester hydrolase activity;0.0174147086888709!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0176681072101697!GO:0015980;energy derivation by oxidation of organic compounds;0.0180035818874768!GO:0031124;mRNA 3'-end processing;0.0185792114164591!GO:0040029;regulation of gene expression, epigenetic;0.018779061813873!GO:0006376;mRNA splice site selection;0.0188327672256472!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0188327672256472!GO:0019894;kinesin binding;0.0192041190945677!GO:0046467;membrane lipid biosynthetic process;0.0194432614762712!GO:0003725;double-stranded RNA binding;0.0195441133660418!GO:0005637;nuclear inner membrane;0.0195566054659904!GO:0030131;clathrin adaptor complex;0.0202116472438178!GO:0005869;dynactin complex;0.0203655327592802!GO:0016791;phosphoric monoester hydrolase activity;0.0203687748941366!GO:0005868;cytoplasmic dynein complex;0.0203687748941366!GO:0019887;protein kinase regulator activity;0.0204803500934984!GO:0006470;protein amino acid dephosphorylation;0.0213585610726463!GO:0051252;regulation of RNA metabolic process;0.0217503277307351!GO:0043209;myelin sheath;0.021800608403118!GO:0003730;mRNA 3'-UTR binding;0.0218139634930284!GO:0043414;biopolymer methylation;0.0223694490555051!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0225928437817823!GO:0006895;Golgi to endosome transport;0.0229408651814049!GO:0016579;protein deubiquitination;0.0231564930003227!GO:0051920;peroxiredoxin activity;0.0231612836142009!GO:0042175;nuclear envelope-endoplasmic reticulum network;0.0232995595356233!GO:0000209;protein polyubiquitination;0.0237141817658323!GO:0004428;inositol or phosphatidylinositol kinase activity;0.0237141817658323!GO:0030660;Golgi-associated vesicle membrane;0.0237732946138521!GO:0016566;specific transcriptional repressor activity;0.0244131229708997!GO:0016251;general RNA polymerase II transcription factor activity;0.0246208131733342!GO:0043021;ribonucleoprotein binding;0.0248203370908062!GO:0009719;response to endogenous stimulus;0.0255971184501192!GO:0030134;ER to Golgi transport vesicle;0.0256803154851169!GO:0006405;RNA export from nucleus;0.0257809863287895!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0260752389918839!GO:0000062;acyl-CoA binding;0.0262303854947008!GO:0012506;vesicle membrane;0.0268010012079755!GO:0019903;protein phosphatase binding;0.0270262230529103!GO:0051789;response to protein stimulus;0.0274923177318135!GO:0006986;response to unfolded protein;0.0274923177318135!GO:0051539;4 iron, 4 sulfur cluster binding;0.0275570165812849!GO:0005789;endoplasmic reticulum membrane;0.0277094483149675!GO:0006399;tRNA metabolic process;0.0282273571147536!GO:0005100;Rho GTPase activator activity;0.0287539130606986!GO:0012501;programmed cell death;0.0291666557803649!GO:0030137;COPI-coated vesicle;0.0293491972913147!GO:0030521;androgen receptor signaling pathway;0.030050195487488!GO:0016836;hydro-lyase activity;0.0305851379095517!GO:0006414;translational elongation;0.0311137374742262!GO:0045055;regulated secretory pathway;0.0313171214882758!GO:0005741;mitochondrial outer membrane;0.0321406617048771!GO:0019207;kinase regulator activity;0.0322028095715817!GO:0004860;protein kinase inhibitor activity;0.033006775756202!GO:0032535;regulation of cellular component size;0.033006775756202!GO:0006915;apoptosis;0.033006775756202!GO:0005773;vacuole;0.0330517774571603!GO:0006364;rRNA processing;0.0330517774571603!GO:0005048;signal sequence binding;0.0339235837970617!GO:0042802;identical protein binding;0.0343215012620834!GO:0016079;synaptic vesicle exocytosis;0.035119643741709!GO:0046872;metal ion binding;0.0351914981344805!GO:0019888;protein phosphatase regulator activity;0.0356812432760051!GO:0016279;protein-lysine N-methyltransferase activity;0.0357277272272959!GO:0018024;histone-lysine N-methyltransferase activity;0.0357277272272959!GO:0016278;lysine N-methyltransferase activity;0.0357277272272959!GO:0001578;microtubule bundle formation;0.0357706372888004!GO:0031902;late endosome membrane;0.0369154486000129!GO:0046839;phospholipid dephosphorylation;0.0370714802828734!GO:0000902;cell morphogenesis;0.0378120864352978!GO:0032989;cellular structure morphogenesis;0.0378120864352978!GO:0008312;7S RNA binding;0.037865661851571!GO:0043560;insulin receptor substrate binding;0.038426111540023!GO:0007034;vacuolar transport;0.0385192628722273!GO:0006916;anti-apoptosis;0.0395676765235999!GO:0017016;Ras GTPase binding;0.0395676765235999!GO:0006352;transcription initiation;0.0398712030789845!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0398942987756293!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.040038079314716!GO:0045047;protein targeting to ER;0.040038079314716!GO:0051287;NAD binding;0.0404192740734661!GO:0031267;small GTPase binding;0.0405029922200045!GO:0008361;regulation of cell size;0.0405403230524098!GO:0032320;positive regulation of Ras GTPase activity;0.04083505881134!GO:0045941;positive regulation of transcription;0.0413015904509678!GO:0003785;actin monomer binding;0.0422483579508498!GO:0018409;peptide or protein amino-terminal blocking;0.0422614287808198!GO:0015071;protein phosphatase type 2C activity;0.0422992834917734!GO:0005545;phosphatidylinositol binding;0.0431472734222216!GO:0004402;histone acetyltransferase activity;0.0434271993928208!GO:0004468;lysine N-acetyltransferase activity;0.0434271993928208!GO:0043086;negative regulation of catalytic activity;0.0435062332633598!GO:0000785;chromatin;0.044240606557741!GO:0001508;regulation of action potential;0.0442718751887199!GO:0042054;histone methyltransferase activity;0.0443096424792392!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0446814110953156!GO:0051020;GTPase binding;0.0448337295631445!GO:0007266;Rho protein signal transduction;0.0450471729723262!GO:0016072;rRNA metabolic process;0.0456700672977665!GO:0006378;mRNA polyadenylation;0.0464008652387422!GO:0016779;nucleotidyltransferase activity;0.0467212408648495!GO:0000287;magnesium ion binding;0.0469906823164032!GO:0030127;COPII vesicle coat;0.0477939989139502!GO:0012507;ER to Golgi transport vesicle membrane;0.0477939989139502!GO:0044433;cytoplasmic vesicle part;0.0479015906815163!GO:0006665;sphingolipid metabolic process;0.0483139451574991!GO:0031365;N-terminal protein amino acid modification;0.0492496283015018!GO:0050767;regulation of neurogenesis;0.049271873189858!GO:0042585;germinal vesicle;0.049271873189858!GO:0004672;protein kinase activity;0.0493338929667618!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0496102900175595
|sample_id=10166
|sample_note=
|sample_sex=female
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=cerebellum
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|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10166-103B4;search_select_hide=table117:FF:10166-103B4
}}
}}

Latest revision as of 12:24, 3 June 2020

Name:cerebellum, adult, donor10252
Species:Human (Homo sapiens)
Library ID:CNhs12323
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuecerebellum
dev stageNA
sexfemale
age76
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyNA
collaborationPeter Heutink
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004727
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12323 CAGE DRX008632 DRR009504
Accession ID Hg19

Library idBAMCTSS
CNhs12323 DRZ000929 DRZ002314
Accession ID Hg38

Library idBAMCTSS
CNhs12323 DRZ012279 DRZ013664
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload
HumanCAGEScan Download raw sequence, BAM & CTSS

Library id3prime-FASTQ5prime-FASTQBAMCTSS
NCig10037downloaddownloaddownloaddownload

RNA-Seq Accession numbers
MethodSample accession id
RNA-Seq  SAMD00004727
Library accession numbers

Library idMethodExp. accession idRun accession id
RDhi10099 RNA-Seq DRX057156 DRR062915
Accession ID Hg19

Library idBAMCTSS
RDhi10099 DRZ007991


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0.191
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.676
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.305
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0.895
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0.0357
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula1.003
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.0868
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.124
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0716
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0.124
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0.191
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0.0455
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.0455
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.0455
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.436
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.628
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.0455
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0871
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0.0455
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.13
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0.0515
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.735
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.0455
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0.275
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.0228
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0.0455
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0.249
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0.124
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.0868
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0723
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0.6
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.0868
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0.0455
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0.688
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.452
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0.593
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial1.606
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.0455
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0.0455
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.0455
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0.406
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0.275
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0.191
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.038
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0.87
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12323

Jaspar motifP-value
MA0002.20.0162
MA0003.10.171
MA0004.10.335
MA0006.10.239
MA0007.10.319
MA0009.10.334
MA0014.10.599
MA0017.10.0013
MA0018.20.212
MA0019.10.641
MA0024.10.431
MA0025.10.248
MA0027.10.84
MA0028.10.146
MA0029.10.0881
MA0030.10.185
MA0031.10.247
MA0035.20.0187
MA0038.10.3
MA0039.20.235
MA0040.10.818
MA0041.10.532
MA0042.10.971
MA0043.10.837
MA0046.10.038
MA0047.20.103
MA0048.10.37
MA0050.10.0135
MA0051.10.0316
MA0052.10.435
MA0055.10.0432
MA0057.10.437
MA0058.10.316
MA0059.10.0602
MA0060.10.0395
MA0061.10.0078
MA0062.20.0091
MA0065.24.53477e-4
MA0066.10.0118
MA0067.10.903
MA0068.10.68
MA0069.10.971
MA0070.10.699
MA0071.10.154
MA0072.10.89
MA0073.10.333
MA0074.10.21
MA0076.10.248
MA0077.10.449
MA0078.10.531
MA0079.20.804
MA0080.23.84216e-9
MA0081.10.0679
MA0083.10.00429
MA0084.10.561
MA0087.10.878
MA0088.10.366
MA0090.10.211
MA0091.10.861
MA0092.10.233
MA0093.10.365
MA0099.21.4775e-17
MA0100.10.633
MA0101.10.00491
MA0102.20.102
MA0103.10.44
MA0104.20.544
MA0105.10.00225
MA0106.10.025
MA0107.10.00418
MA0108.20.114
MA0111.10.486
MA0112.20.00155
MA0113.10.485
MA0114.10.00282
MA0115.10.448
MA0116.10.00789
MA0117.10.856
MA0119.10.175
MA0122.10.457
MA0124.10.982
MA0125.10.526
MA0131.10.648
MA0135.10.41
MA0136.11.24622e-12
MA0137.20.763
MA0138.20.453
MA0139.10.619
MA0140.10.00329
MA0141.10.00314
MA0142.10.962
MA0143.10.766
MA0144.10.336
MA0145.10.126
MA0146.10.0558
MA0147.10.367
MA0148.10.0872
MA0149.10.0286
MA0150.15.48103e-4
MA0152.10.305
MA0153.10.177
MA0154.10.032
MA0155.10.321
MA0156.12.2013e-7
MA0157.10.949
MA0159.10.00288
MA0160.10.0229
MA0162.10.098
MA0163.13.04699e-5
MA0164.10.942
MA0258.10.0184
MA0259.10.849



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12323

Novel motifP-value
10.0506
100.0776
1000.482
1010.814
1020.608
1030.0604
1040.123
1050.163
1060.0111
1070.0395
1080.717
1090.00233
110.0179
1100.0581
1110.362
1120.372
1130.366
1140.188
1150.994
1160.207
1170.0165
1180.274
1190.298
120.748
1200.156
1210.673
1220.904
1230.304
1240.381
1250.292
1260.0459
1270.389
1280.148
1290.435
130.00412
1300.155
1310.288
1320.738
1330.372
1340.501
1350.703
1360.00277
1370.558
1380.825
1390.118
140.71
1400.754
1410.575
1420.795
1430.0624
1440.959
1450.226
1460.537
1470.901
1480.0195
1490.0737
150.0936
1500.223
1510.65
1520.0306
1530.982
1540.624
1550.516
1560.579
1570.353
1580.0409
1590.00616
160.0597
1600.215
1610.298
1620.768
1630.828
1640.0852
1650.0763
1660.703
1670.888
1680.322
1690.0197
170.0887
180.141
190.234
20.77
200.318
210.0707
220.202
230.164
240.0504
250.499
260.00113
270.494
280.767
290.0218
30.0559
300.923
310.897
320.0486
330.0604
340.554
350.763
360.202
370.0412
380.345
390.169
40.849
400.0493
410.224
420.243
430.113
440.182
450.652
460.0556
470.0535
480.0919
490.271
50.463
500.359
510.4
520.294
530.848
540.387
550.616
560.362
570.367
580.344
590.0396
60.959
600.0353
610.0734
620.147
630.136
640.29
650.225
660.272
670.43
680.164
690.355
70.0619
700.0165
710.0131
720.313
730.0187
740.84
750.0573
760.486
770.103
780.0308
790.349
80.0311
800.198
810.421
820.478
830.0259
840.697
850.121
860.246
872.3479e-4
880.83
890.19
90.33
900.0782
910.773
920.391
930.942
940.186
950.012
960.883
970.665
980.379
990.407



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12323


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0002037 (cerebellum)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002680 (regional part of metencephalon)
0002616 (regional part of brain)
0004733 (segmental subdivision of hindbrain)
0004732 (segmental subdivision of nervous system)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001895 (metencephalon)
0002028 (hindbrain)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010083 (human cerebellum - adult sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006215 (rhombic lip)
UBERON:0010316 (germ layer / neural crest)

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