FF:10166-103B4: Difference between revisions
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{{f5samples | {{f5samples | ||
| | |DRA_sample_Accession=CAGE@SAMD00004727 | ||
|ancestors_in_cell_lineage_facet= | |DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00004727 | ||
|HumanCAGEScanFiles=NCig10037;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/cerebellum%252c%2520adult%252c%2520donor10252.NCig10037.10166-103B4.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/cerebellum%252c%2520adult%252c%2520donor10252.NCig10037.10166-103B4.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/cerebellum%252c%2520adult%252c%2520donor10252.NCig10037.10166-103B4.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.tissue.CAGEScan/cerebellum%252c%2520adult%252c%2520donor10252.NCig10037.10166-103B4.hg19.GCTATA.pairs.bed.gz | |||
|accession_numbers=CAGE;DRX008632;DRR009504;DRZ000929;DRZ002314;DRZ012279;DRZ013664 | |||
|accession_numbers_RNASeq=RNA-Seq;DRX057156;DRR062915;DRZ007991 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0002037,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002680,UBERON:0002616,UBERON:0004733,UBERON:0004732,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001895,UBERON:0002028 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010083 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 45: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/cerebellum%252c%2520adult%252c%2520donor10252.CNhs12323.10166-103B4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/cerebellum%252c%2520adult%252c%2520donor10252.CNhs12323.10166-103B4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/cerebellum%252c%2520adult%252c%2520donor10252.CNhs12323.10166-103B4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/cerebellum%252c%2520adult%252c%2520donor10252.CNhs12323.10166-103B4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/cerebellum%252c%2520adult%252c%2520donor10252.CNhs12323.10166-103B4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10166-103B4 | |id=FF:10166-103B4 | ||
|is_a=EFO:0002091;;FF:0000002;;FF: | |is_a=EFO:0002091;;FF:0000002;;FF:0010083 | ||
|is_obsolete= | |||
|library_id=CNhs12323 | |||
|library_id_phase_based=2:CNhs12323 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10166 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10166 | |||
|name=cerebellum, adult, donor10252 | |name=cerebellum, adult, donor10252 | ||
|namespace= | |namespace= | ||
| Line 42: | Line 64: | ||
|profile_cagescan=NCig10037,,, | |profile_cagescan=NCig10037,,, | ||
|profile_hcage=CNhs12323,LSID913,release011,COMPLETED | |profile_hcage=CNhs12323,LSID913,release011,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=103 | |rna_box=103 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 56: | Line 81: | ||
|rna_tube_id=103B4 | |rna_tube_id=103B4 | ||
|rna_weight_ug=62.007 | |rna_weight_ug=62.007 | ||
|rnaseq_library_id=RDhi10099 | |||
|sample_age=76 | |sample_age=76 | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 96: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.17341694531386e-233!GO:0043226;organelle;4.00791083837814e-138!GO:0043229;intracellular organelle;1.45614366113409e-137!GO:0043227;membrane-bound organelle;2.56223539953973e-134!GO:0043231;intracellular membrane-bound organelle;3.21348494147344e-134!GO:0005737;cytoplasm;2.43664888254963e-117!GO:0044444;cytoplasmic part;8.75307449013885e-69!GO:0005634;nucleus;2.34956223537774e-66!GO:0044422;organelle part;1.1227073366796e-64!GO:0044446;intracellular organelle part;9.86141981991639e-64!GO:0005515;protein binding;2.53459670117657e-63!GO:0032991;macromolecular complex;1.46412470817843e-56!GO:0043170;macromolecule metabolic process;3.20998734411559e-47!GO:0044428;nuclear part;3.40883620044667e-46!GO:0016043;cellular component organization and biogenesis;4.06240071861513e-45!GO:0044238;primary metabolic process;2.45140806510486e-44!GO:0044237;cellular metabolic process;3.36004607152766e-42!GO:0003723;RNA binding;9.73731239328225e-42!GO:0043283;biopolymer metabolic process;8.37175264417548e-41!GO:0043233;organelle lumen;1.15444638545133e-39!GO:0031974;membrane-enclosed lumen;1.15444638545133e-39!GO:0033036;macromolecule localization;1.82247319746887e-39!GO:0015031;protein transport;1.17343135587733e-37!GO:0008104;protein localization;4.6008578926949e-35!GO:0045184;establishment of protein localization;4.19994681528276e-34!GO:0010467;gene expression;2.04478939405225e-33!GO:0030529;ribonucleoprotein complex;2.72172290777274e-33!GO:0043234;protein complex;1.24240974771641e-32!GO:0016071;mRNA metabolic process;4.21906031716548e-32!GO:0031981;nuclear lumen;4.21164751074769e-30!GO:0046907;intracellular transport;7.11780592052495e-30!GO:0006396;RNA processing;3.28340640535528e-29!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;9.67186345706578e-28!GO:0031090;organelle membrane;4.16700270584432e-27!GO:0008380;RNA splicing;7.27825969909985e-27!GO:0051649;establishment of cellular localization;1.40975074338463e-26!GO:0005739;mitochondrion;3.65470416453491e-26!GO:0051641;cellular localization;7.00252931820923e-26!GO:0006397;mRNA processing;7.17752457349319e-26!GO:0016070;RNA metabolic process;5.04088650626502e-25!GO:0016192;vesicle-mediated transport;5.7201460687701e-24!GO:0006886;intracellular protein transport;1.9296869697516e-23!GO:0006996;organelle organization and biogenesis;5.55551751784598e-23!GO:0005654;nucleoplasm;1.40494006249366e-22!GO:0019538;protein metabolic process;9.60715109201807e-22!GO:0003676;nucleic acid binding;3.25381389173133e-21!GO:0044451;nucleoplasm part;3.82911537978017e-21!GO:0031967;organelle envelope;2.76316486556453e-20!GO:0031975;envelope;2.93151014973568e-20!GO:0000166;nucleotide binding;4.09860579420068e-19!GO:0006512;ubiquitin cycle;2.21098570343445e-18!GO:0005794;Golgi apparatus;2.45801825713054e-18!GO:0065003;macromolecular complex assembly;2.9119660894099e-18!GO:0044267;cellular protein metabolic process;4.43251698473444e-18!GO:0044429;mitochondrial part;4.8375303474871e-18!GO:0005681;spliceosome;5.27148479270299e-18!GO:0044260;cellular macromolecule metabolic process;5.3624782145413e-18!GO:0022607;cellular component assembly;1.97104057299326e-16!GO:0005829;cytosol;2.61426019426621e-16!GO:0006119;oxidative phosphorylation;1.68537993988384e-15!GO:0008134;transcription factor binding;7.38305367416836e-15!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;8.57433406130341e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;1.02154689450829e-14!GO:0016462;pyrophosphatase activity;1.02154689450829e-14!GO:0017111;nucleoside-triphosphatase activity;1.02154689450829e-14!GO:0043412;biopolymer modification;1.03837559579893e-14!GO:0043687;post-translational protein modification;2.35345497605587e-14!GO:0005840;ribosome;2.3687390363783e-14!GO:0016874;ligase activity;4.31319040671395e-14!GO:0031982;vesicle;1.34925567074404e-13!GO:0006464;protein modification process;1.7601095088978e-13!GO:0016604;nuclear body;2.86002050140616e-13!GO:0032553;ribonucleotide binding;3.174467931238e-13!GO:0032555;purine ribonucleotide binding;3.174467931238e-13!GO:0031410;cytoplasmic vesicle;5.10290331401366e-13!GO:0019866;organelle inner membrane;5.93641206129979e-13!GO:0031966;mitochondrial membrane;8.40270618233739e-13!GO:0016607;nuclear speck;1.05488951287216e-12!GO:0006412;translation;1.07336712931599e-12!GO:0005740;mitochondrial envelope;1.25989921318543e-12!GO:0050794;regulation of cellular process;1.5292178567535e-12!GO:0006511;ubiquitin-dependent protein catabolic process;2.12582309816094e-12!GO:0031988;membrane-bound vesicle;2.62435388492121e-12!GO:0051603;proteolysis involved in cellular protein catabolic process;2.8032893196165e-12!GO:0006325;establishment and/or maintenance of chromatin architecture;3.16314069704629e-12!GO:0019941;modification-dependent protein catabolic process;3.68680450828454e-12!GO:0043632;modification-dependent macromolecule catabolic process;3.68680450828454e-12!GO:0017076;purine nucleotide binding;3.87350362247296e-12!GO:0045045;secretory pathway;3.8882251993119e-12!GO:0048193;Golgi vesicle transport;4.93571114479986e-12!GO:0016568;chromatin modification;5.47301882781079e-12!GO:0006259;DNA metabolic process;5.76064023855927e-12!GO:0044257;cellular protein catabolic process;7.88450519932689e-12!GO:0016023;cytoplasmic membrane-bound vesicle;8.64407981486718e-12!GO:0006457;protein folding;9.96197333803798e-12!GO:0012505;endomembrane system;1.16191643103188e-11!GO:0005743;mitochondrial inner membrane;1.79841945208706e-11!GO:0050789;regulation of biological process;3.09401297678587e-11!GO:0006323;DNA packaging;3.2326426621433e-11!GO:0044265;cellular macromolecule catabolic process;5.21173269155256e-11!GO:0043228;non-membrane-bound organelle;9.39449714767011e-11!GO:0043232;intracellular non-membrane-bound organelle;9.39449714767011e-11!GO:0003735;structural constituent of ribosome;1.16018882453771e-10!GO:0022613;ribonucleoprotein complex biogenesis and assembly;1.19375933480327e-10!GO:0044455;mitochondrial membrane part;1.23063210742139e-10!GO:0050136;NADH dehydrogenase (quinone) activity;1.78815390003877e-10!GO:0003954;NADH dehydrogenase activity;1.78815390003877e-10!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.78815390003877e-10!GO:0008270;zinc ion binding;1.85029843236155e-10!GO:0005746;mitochondrial respiratory chain;3.29103928871174e-10!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.67866057055789e-10!GO:0008135;translation factor activity, nucleic acid binding;5.10366056213296e-10!GO:0003712;transcription cofactor activity;5.10366056213296e-10!GO:0006605;protein targeting;7.38926132253854e-10!GO:0032559;adenyl ribonucleotide binding;7.98494718860343e-10!GO:0048770;pigment granule;1.2583682843973e-09!GO:0042470;melanosome;1.2583682843973e-09!GO:0005524;ATP binding;1.52139580970961e-09!GO:0031965;nuclear membrane;1.63313349317246e-09!GO:0005083;small GTPase regulator activity;2.23118767231939e-09!GO:0022618;protein-RNA complex assembly;2.51837910089061e-09!GO:0043285;biopolymer catabolic process;2.70477888425074e-09!GO:0051082;unfolded protein binding;2.85978415578752e-09!GO:0009059;macromolecule biosynthetic process;4.29186423079851e-09!GO:0019222;regulation of metabolic process;4.43583238805644e-09!GO:0044431;Golgi apparatus part;4.56397481913966e-09!GO:0030163;protein catabolic process;5.00054712114116e-09!GO:0030695;GTPase regulator activity;5.05487781873979e-09!GO:0030964;NADH dehydrogenase complex (quinone);5.97842091658815e-09!GO:0045271;respiratory chain complex I;5.97842091658815e-09!GO:0005747;mitochondrial respiratory chain complex I;5.97842091658815e-09!GO:0008565;protein transporter activity;6.78830207537215e-09!GO:0051276;chromosome organization and biogenesis;7.07078812032615e-09!GO:0007264;small GTPase mediated signal transduction;7.15752522088561e-09!GO:0008639;small protein conjugating enzyme activity;7.23262187043252e-09!GO:0004842;ubiquitin-protein ligase activity;7.55277639747751e-09!GO:0006913;nucleocytoplasmic transport;7.74333529423098e-09!GO:0042775;organelle ATP synthesis coupled electron transport;7.78234590877354e-09!GO:0042773;ATP synthesis coupled electron transport;7.78234590877354e-09!GO:0030554;adenyl nucleotide binding;9.35357870895334e-09!GO:0033279;ribosomal subunit;1.48241936757708e-08!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.59620128401133e-08!GO:0051169;nuclear transport;1.67091949683859e-08!GO:0019787;small conjugating protein ligase activity;1.7555080793765e-08!GO:0005635;nuclear envelope;2.30799883386795e-08!GO:0015630;microtubule cytoskeleton;2.3761211708446e-08!GO:0032940;secretion by cell;3.4284010765459e-08!GO:0006793;phosphorus metabolic process;3.55948060714382e-08!GO:0006796;phosphate metabolic process;3.55948060714382e-08!GO:0019899;enzyme binding;3.97481423615109e-08!GO:0019829;cation-transporting ATPase activity;4.20657186616111e-08!GO:0030135;coated vesicle;4.21109528937521e-08!GO:0000398;nuclear mRNA splicing, via spliceosome;4.40628043365486e-08!GO:0000375;RNA splicing, via transesterification reactions;4.40628043365486e-08!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.40628043365486e-08!GO:0006350;transcription;4.71987729793842e-08!GO:0009057;macromolecule catabolic process;4.74534448383114e-08!GO:0016887;ATPase activity;7.5597090210383e-08!GO:0031980;mitochondrial lumen;8.71106654671146e-08!GO:0005759;mitochondrial matrix;8.71106654671146e-08!GO:0006461;protein complex assembly;1.02086224493871e-07!GO:0044445;cytosolic part;1.22969583753936e-07!GO:0006403;RNA localization;1.49245075937133e-07!GO:0008287;protein serine/threonine phosphatase complex;1.70441831599792e-07!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.02698436003076e-07!GO:0009058;biosynthetic process;2.59616510995979e-07!GO:0006366;transcription from RNA polymerase II promoter;2.92815391361997e-07!GO:0032774;RNA biosynthetic process;3.0166766715334e-07!GO:0050657;nucleic acid transport;3.28543803932113e-07!GO:0051236;establishment of RNA localization;3.28543803932113e-07!GO:0050658;RNA transport;3.28543803932113e-07!GO:0006351;transcription, DNA-dependent;3.30636286242624e-07!GO:0008092;cytoskeletal protein binding;4.02804577749779e-07!GO:0003924;GTPase activity;4.19588664526266e-07!GO:0005830;cytosolic ribosome (sensu Eukaryota);4.50815425156596e-07!GO:0042623;ATPase activity, coupled;5.10293016710212e-07!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.43309686667818e-07!GO:0010468;regulation of gene expression;6.44296246868848e-07!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;6.82689920605959e-07!GO:0015631;tubulin binding;7.81453401664095e-07!GO:0005730;nucleolus;8.09224452601089e-07!GO:0006810;transport;8.12013806899342e-07!GO:0016881;acid-amino acid ligase activity;8.86809196558265e-07!GO:0005768;endosome;9.07938671054193e-07!GO:0031323;regulation of cellular metabolic process;9.21736038992863e-07!GO:0016564;transcription repressor activity;1.04043570396517e-06!GO:0007010;cytoskeleton organization and biogenesis;1.07000378448987e-06!GO:0048523;negative regulation of cellular process;1.09848384735003e-06!GO:0044248;cellular catabolic process;1.19846155668947e-06!GO:0016310;phosphorylation;1.23253143620842e-06!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.29805984227318e-06!GO:0046914;transition metal ion binding;1.33860991063765e-06!GO:0065007;biological regulation;1.60476517441952e-06!GO:0044453;nuclear membrane part;1.69029762719465e-06!GO:0000139;Golgi membrane;1.78935671919092e-06!GO:0048475;coated membrane;1.80530024863964e-06!GO:0030117;membrane coat;1.80530024863964e-06!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;2.02115369737462e-06!GO:0045449;regulation of transcription;2.12546906842933e-06!GO:0006446;regulation of translational initiation;2.20583719318323e-06!GO:0003713;transcription coactivator activity;2.3285130300911e-06!GO:0003743;translation initiation factor activity;2.46305102155178e-06!GO:0006355;regulation of transcription, DNA-dependent;2.58841375725541e-06!GO:0044249;cellular biosynthetic process;3.71332330779563e-06!GO:0019717;synaptosome;3.78680755420055e-06!GO:0015986;ATP synthesis coupled proton transport;4.20250104052497e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.20250104052497e-06!GO:0005874;microtubule;4.21719862107157e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;4.58922156297584e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;5.16386166593819e-06!GO:0008017;microtubule binding;5.49959081812849e-06!GO:0032446;protein modification by small protein conjugation;5.95629738543235e-06!GO:0000502;proteasome complex (sensu Eukaryota);6.72798612159456e-06!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;7.07021399319506e-06!GO:0006413;translational initiation;7.12346001934615e-06!GO:0051028;mRNA transport;7.76236775027634e-06!GO:0005643;nuclear pore;1.05565208241149e-05!GO:0005769;early endosome;1.35731143348826e-05!GO:0005525;GTP binding;1.35977357249003e-05!GO:0004386;helicase activity;1.46932116112987e-05!GO:0051056;regulation of small GTPase mediated signal transduction;1.51589084411584e-05!GO:0030036;actin cytoskeleton organization and biogenesis;1.7192162191933e-05!GO:0016044;membrane organization and biogenesis;1.72955097348676e-05!GO:0009892;negative regulation of metabolic process;1.81020541970951e-05!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;1.84834232212915e-05!GO:0017038;protein import;1.99633154961829e-05!GO:0016481;negative regulation of transcription;2.04686744291034e-05!GO:0016567;protein ubiquitination;2.08561932545593e-05!GO:0015935;small ribosomal subunit;2.25596259292335e-05!GO:0045786;negative regulation of progression through cell cycle;2.36225656670906e-05!GO:0048519;negative regulation of biological process;2.73035067420653e-05!GO:0043566;structure-specific DNA binding;2.96571511235297e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;3.1104989079267e-05!GO:0000151;ubiquitin ligase complex;3.2123053019971e-05!GO:0006333;chromatin assembly or disassembly;4.42487941362113e-05!GO:0044440;endosomal part;4.49772877392417e-05!GO:0010008;endosome membrane;4.49772877392417e-05!GO:0048471;perinuclear region of cytoplasm;4.83488519202684e-05!GO:0051234;establishment of localization;5.41182468587395e-05!GO:0030136;clathrin-coated vesicle;5.88818939283411e-05!GO:0007049;cell cycle;6.32063185768476e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;7.69616590764075e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;7.69616590764075e-05!GO:0006754;ATP biosynthetic process;7.84103072838929e-05!GO:0006753;nucleoside phosphate metabolic process;7.84103072838929e-05!GO:0007265;Ras protein signal transduction;7.91753902624088e-05!GO:0003714;transcription corepressor activity;8.79464161504245e-05!GO:0006974;response to DNA damage stimulus;9.11532798036831e-05!GO:0016469;proton-transporting two-sector ATPase complex;9.63398335978054e-05!GO:0048489;synaptic vesicle transport;0.00010987999454788!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000118099979592804!GO:0006888;ER to Golgi vesicle-mediated transport;0.000122405517260287!GO:0004674;protein serine/threonine kinase activity;0.000124341951140452!GO:0009060;aerobic respiration;0.000130417232663637!GO:0045892;negative regulation of transcription, DNA-dependent;0.000132484216747441!GO:0006606;protein import into nucleus;0.000137755039956282!GO:0008026;ATP-dependent helicase activity;0.000155001367974326!GO:0005905;coated pit;0.000156354257288889!GO:0030029;actin filament-based process;0.000158817201489897!GO:0016197;endosome transport;0.000160559852407726!GO:0031324;negative regulation of cellular metabolic process;0.000162778822538196!GO:0003729;mRNA binding;0.00016875598151949!GO:0051179;localization;0.00017155576308628!GO:0032561;guanyl ribonucleotide binding;0.000178362020635411!GO:0019001;guanyl nucleotide binding;0.000178362020635411!GO:0016740;transferase activity;0.000178362020635411!GO:0046034;ATP metabolic process;0.000183626488887773!GO:0045333;cellular respiration;0.000187939912690956!GO:0005798;Golgi-associated vesicle;0.000190264303552905!GO:0051128;regulation of cellular component organization and biogenesis;0.000191188243103703!GO:0000245;spliceosome assembly;0.000210128970815815!GO:0030120;vesicle coat;0.000215875482405558!GO:0030662;coated vesicle membrane;0.000215875482405558!GO:0006897;endocytosis;0.000217651244282575!GO:0010324;membrane invagination;0.000217651244282575!GO:0051170;nuclear import;0.000218052880989583!GO:0005783;endoplasmic reticulum;0.000248503300025826!GO:0043005;neuron projection;0.00027266236290691!GO:0015078;hydrogen ion transmembrane transporter activity;0.000289771607364736!GO:0045259;proton-transporting ATP synthase complex;0.000314219220249948!GO:0006402;mRNA catabolic process;0.000314219220249948!GO:0031252;leading edge;0.000315092843365248!GO:0005793;ER-Golgi intermediate compartment;0.000317892797768978!GO:0003724;RNA helicase activity;0.000328296690365265!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;0.0003626124897765!GO:0009145;purine nucleoside triphosphate biosynthetic process;0.0003626124897765!GO:0051186;cofactor metabolic process;0.000379941465142463!GO:0005096;GTPase activator activity;0.000379941465142463!GO:0016363;nuclear matrix;0.000393249350221003!GO:0005813;centrosome;0.000438265735187012!GO:0051427;hormone receptor binding;0.000459560871849875!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000465583613296866!GO:0015399;primary active transmembrane transporter activity;0.000465583613296866!GO:0043492;ATPase activity, coupled to movement of substances;0.00046981742747825!GO:0005770;late endosome;0.000477736746283311!GO:0009142;nucleoside triphosphate biosynthetic process;0.000485212650970413!GO:0009201;ribonucleoside triphosphate biosynthetic process;0.000485212650970413!GO:0016301;kinase activity;0.0004894874379784!GO:0031901;early endosome membrane;0.000493969541711589!GO:0006281;DNA repair;0.000495794576344868!GO:0007242;intracellular signaling cascade;0.000504748778369419!GO:0008047;enzyme activator activity;0.000511546174513499!GO:0043623;cellular protein complex assembly;0.000511546174513499!GO:0009205;purine ribonucleoside triphosphate metabolic process;0.000515028621453394!GO:0009144;purine nucleoside triphosphate metabolic process;0.000515028621453394!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);0.000584642646637688!GO:0003697;single-stranded DNA binding;0.000607347451158232!GO:0051168;nuclear export;0.000607347451158232!GO:0030118;clathrin coat;0.000607557063332999!GO:0015934;large ribosomal subunit;0.000616449217120947!GO:0007399;nervous system development;0.000617734085513583!GO:0006613;cotranslational protein targeting to membrane;0.000649303327123066!GO:0016563;transcription activator activity;0.000649303327123066!GO:0009199;ribonucleoside triphosphate metabolic process;0.000652426136774997!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000660616351153258!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.000662534364002631!GO:0004812;aminoacyl-tRNA ligase activity;0.000662534364002631!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.000662534364002631!GO:0051726;regulation of cell cycle;0.000744237419359762!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000805260259809647!GO:0035257;nuclear hormone receptor binding;0.000805260259809647!GO:0008286;insulin receptor signaling pathway;0.000904319156968371!GO:0051129;negative regulation of cellular component organization and biogenesis;0.000904319156968371!GO:0009141;nucleoside triphosphate metabolic process;0.000924615469024081!GO:0000159;protein phosphatase type 2A complex;0.000943435741142537!GO:0005815;microtubule organizing center;0.000970709239174986!GO:0005667;transcription factor complex;0.000991992351833531!GO:0006099;tricarboxylic acid cycle;0.00105268395647472!GO:0046356;acetyl-CoA catabolic process;0.00105268395647472!GO:0006892;post-Golgi vesicle-mediated transport;0.00110163519571219!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);0.00110163519571219!GO:0046930;pore complex;0.00114267805674903!GO:0019904;protein domain specific binding;0.00117690506411836!GO:0006338;chromatin remodeling;0.00121458341858273!GO:0046578;regulation of Ras protein signal transduction;0.00125602682998162!GO:0031072;heat shock protein binding;0.00125849953048752!GO:0051087;chaperone binding;0.00130080575224241!GO:0009109;coenzyme catabolic process;0.0013312416798612!GO:0000074;regulation of progression through cell cycle;0.00143024519539274!GO:0008022;protein C-terminus binding;0.0014505130271041!GO:0008601;protein phosphatase type 2A regulator activity;0.00147169230879431!GO:0043038;amino acid activation;0.00157265381948122!GO:0006418;tRNA aminoacylation for protein translation;0.00157265381948122!GO:0043039;tRNA aminoacylation;0.00157265381948122!GO:0009150;purine ribonucleotide metabolic process;0.00168289789383092!GO:0005938;cell cortex;0.00182246766015237!GO:0009056;catabolic process;0.00182304589541341!GO:0019783;small conjugating protein-specific protease activity;0.00182304589541341!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.0019141719152947!GO:0022890;inorganic cation transmembrane transporter activity;0.00195283160539068!GO:0016050;vesicle organization and biogenesis;0.00197639214370334!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.00197887186534764!GO:0004667;prostaglandin-D synthase activity;0.00197887186534764!GO:0050802;circadian sleep/wake cycle, sleep;0.00197887186534764!GO:0022410;circadian sleep/wake cycle process;0.00197887186534764!GO:0042749;regulation of circadian sleep/wake cycle;0.00197887186534764!GO:0009152;purine ribonucleotide biosynthetic process;0.00207684382533521!GO:0004843;ubiquitin-specific protease activity;0.00220258941573799!GO:0043087;regulation of GTPase activity;0.0022606784691949!GO:0030532;small nuclear ribonucleoprotein complex;0.00231545625006126!GO:0005761;mitochondrial ribosome;0.0024320035503022!GO:0000313;organellar ribosome;0.0024320035503022!GO:0009055;electron carrier activity;0.00250557916156532!GO:0006163;purine nucleotide metabolic process;0.00254939110134283!GO:0051261;protein depolymerization;0.00263243047358518!GO:0006732;coenzyme metabolic process;0.00279988657626391!GO:0008021;synaptic vesicle;0.0028351662652235!GO:0004221;ubiquitin thiolesterase activity;0.00287787622217651!GO:0019902;phosphatase binding;0.00292298555670256!GO:0030425;dendrite;0.00293128943351462!GO:0004722;protein serine/threonine phosphatase activity;0.00293496881187743!GO:0006891;intra-Golgi vesicle-mediated transport;0.00302691683533271!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.00303056723738728!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00305917561646147!GO:0065002;intracellular protein transport across a membrane;0.00309302226091482!GO:0006752;group transfer coenzyme metabolic process;0.00312743736192054!GO:0051246;regulation of protein metabolic process;0.00318971313215071!GO:0006612;protein targeting to membrane;0.00322856820171216!GO:0005085;guanyl-nucleotide exchange factor activity;0.0032385756174097!GO:0006164;purine nucleotide biosynthetic process;0.00328521479316537!GO:0006607;NLS-bearing substrate import into nucleus;0.00333159680179877!GO:0009259;ribonucleotide metabolic process;0.00339430523655281!GO:0006084;acetyl-CoA metabolic process;0.00372316697241556!GO:0007019;microtubule depolymerization;0.00375832848496138!GO:0009966;regulation of signal transduction;0.0037901307034964!GO:0003746;translation elongation factor activity;0.00466343020318868!GO:0003682;chromatin binding;0.00483487383033288!GO:0000059;protein import into nucleus, docking;0.00487383184115443!GO:0030133;transport vesicle;0.00487776028961277!GO:0032011;ARF protein signal transduction;0.00508035759155239!GO:0032012;regulation of ARF protein signal transduction;0.00508035759155239!GO:0030320;cellular monovalent inorganic anion homeostasis;0.00520504965148807!GO:0055083;monovalent inorganic anion homeostasis;0.00520504965148807!GO:0055064;chloride ion homeostasis;0.00520504965148807!GO:0030644;cellular chloride ion homeostasis;0.00520504965148807!GO:0051187;cofactor catabolic process;0.00523765256398431!GO:0008186;RNA-dependent ATPase activity;0.0053411216664705!GO:0016585;chromatin remodeling complex;0.00544008603559217!GO:0003690;double-stranded DNA binding;0.00546381501516906!GO:0044448;cell cortex part;0.00551526440022472!GO:0065004;protein-DNA complex assembly;0.00555236548224149!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00564003189626461!GO:0033673;negative regulation of kinase activity;0.00567171819944845!GO:0006469;negative regulation of protein kinase activity;0.00567171819944845!GO:0030027;lamellipodium;0.00572070473796514!GO:0003779;actin binding;0.00573105459182628!GO:0044432;endoplasmic reticulum part;0.00596127722248783!GO:0006383;transcription from RNA polymerase III promoter;0.00638811022962895!GO:0022402;cell cycle process;0.00652211953796884!GO:0045893;positive regulation of transcription, DNA-dependent;0.00677452364478577!GO:0009260;ribonucleotide biosynthetic process;0.0070710209546583!GO:0030132;clathrin coat of coated pit;0.00711752451263854!GO:0016311;dephosphorylation;0.00714787048609891!GO:0051188;cofactor biosynthetic process;0.00714787048609891!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00714787048609891!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00714787048609891!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00714787048609891!GO:0003711;transcription elongation regulator activity;0.00732203471676238!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00747697258485894!GO:0030426;growth cone;0.00759048940232446!GO:0035258;steroid hormone receptor binding;0.00794222812935319!GO:0022406;membrane docking;0.00805477299494254!GO:0048278;vesicle docking;0.00805477299494254!GO:0008154;actin polymerization and/or depolymerization;0.00805477299494254!GO:0030427;site of polarized growth;0.00807080023978371!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00832742465300199!GO:0005099;Ras GTPase activator activity;0.00873011267845028!GO:0006401;RNA catabolic process;0.00879393854235287!GO:0031114;regulation of microtubule depolymerization;0.00891573483527478!GO:0007026;negative regulation of microtubule depolymerization;0.00891573483527478!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.00893556178843196!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0089378356717424!GO:0008276;protein methyltransferase activity;0.0089378356717424!GO:0006904;vesicle docking during exocytosis;0.00901732771298344!GO:0004721;phosphoprotein phosphatase activity;0.00905679860341356!GO:0006730;one-carbon compound metabolic process;0.00907117071059118!GO:0007269;neurotransmitter secretion;0.00909497650086157!GO:0003702;RNA polymerase II transcription factor activity;0.0092008350079598!GO:0048167;regulation of synaptic plasticity;0.00924033339812425!GO:0005791;rough endoplasmic reticulum;0.0094257515357051!GO:0046488;phosphatidylinositol metabolic process;0.00946057851989401!GO:0030742;GTP-dependent protein binding;0.00987278943723712!GO:0030258;lipid modification;0.00996489681569202!GO:0048487;beta-tubulin binding;0.0102979133622271!GO:0050811;GABA receptor binding;0.0109365748741182!GO:0003677;DNA binding;0.0111246479972992!GO:0030867;rough endoplasmic reticulum membrane;0.0112186665388157!GO:0016569;covalent chromatin modification;0.0115176321674078!GO:0032318;regulation of Ras GTPase activity;0.0121673527949187!GO:0006260;DNA replication;0.0127020832188484!GO:0000118;histone deacetylase complex;0.0130774502498473!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.0134019255724202!GO:0005086;ARF guanyl-nucleotide exchange factor activity;0.0136035725806063!GO:0050803;regulation of synapse structure and activity;0.0137343718049665!GO:0004004;ATP-dependent RNA helicase activity;0.0137718567158006!GO:0019208;phosphatase regulator activity;0.0139159202097231!GO:0007017;microtubule-based process;0.0139159202097231!GO:0009108;coenzyme biosynthetic process;0.0139159202097231!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0142727178620103!GO:0033043;regulation of organelle organization and biogenesis;0.0142727178620103!GO:0051348;negative regulation of transferase activity;0.014376990711095!GO:0042026;protein refolding;0.0148116285931099!GO:0008654;phospholipid biosynthetic process;0.0149745864285417!GO:0005875;microtubule associated complex;0.0150861706466668!GO:0042254;ribosome biogenesis and assembly;0.0150861706466668!GO:0048500;signal recognition particle;0.0154179563776532!GO:0030658;transport vesicle membrane;0.0156682466705944!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0157889307752939!GO:0004183;carboxypeptidase E activity;0.0160406411085144!GO:0030070;insulin processing;0.0160406411085144!GO:0016584;nucleosome positioning;0.0160580932744328!GO:0032259;methylation;0.016113048091543!GO:0030119;AP-type membrane coat adaptor complex;0.0163323651385147!GO:0030518;steroid hormone receptor signaling pathway;0.0163328396169701!GO:0016570;histone modification;0.016566740224025!GO:0030384;phosphoinositide metabolic process;0.0167897455426083!GO:0008139;nuclear localization sequence binding;0.0169340634652808!GO:0008219;cell death;0.0169547074386822!GO:0016265;death;0.0169547074386822!GO:0035035;histone acetyltransferase binding;0.017062380096041!GO:0045603;positive regulation of endothelial cell differentiation;0.017112519697082!GO:0006887;exocytosis;0.017112519697082!GO:0051540;metal cluster binding;0.0171253861782143!GO:0051536;iron-sulfur cluster binding;0.0171253861782143!GO:0006650;glycerophospholipid metabolic process;0.0171678755933883!GO:0045664;regulation of neuron differentiation;0.017330625865926!GO:0016790;thiolester hydrolase activity;0.0174147086888709!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0176681072101697!GO:0015980;energy derivation by oxidation of organic compounds;0.0180035818874768!GO:0031124;mRNA 3'-end processing;0.0185792114164591!GO:0040029;regulation of gene expression, epigenetic;0.018779061813873!GO:0006376;mRNA splice site selection;0.0188327672256472!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0188327672256472!GO:0019894;kinesin binding;0.0192041190945677!GO:0046467;membrane lipid biosynthetic process;0.0194432614762712!GO:0003725;double-stranded RNA binding;0.0195441133660418!GO:0005637;nuclear inner membrane;0.0195566054659904!GO:0030131;clathrin adaptor complex;0.0202116472438178!GO:0005869;dynactin complex;0.0203655327592802!GO:0016791;phosphoric monoester hydrolase activity;0.0203687748941366!GO:0005868;cytoplasmic dynein complex;0.0203687748941366!GO:0019887;protein kinase regulator activity;0.0204803500934984!GO:0006470;protein amino acid dephosphorylation;0.0213585610726463!GO:0051252;regulation of RNA metabolic process;0.0217503277307351!GO:0043209;myelin sheath;0.021800608403118!GO:0003730;mRNA 3'-UTR binding;0.0218139634930284!GO:0043414;biopolymer methylation;0.0223694490555051!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0225928437817823!GO:0006895;Golgi to endosome transport;0.0229408651814049!GO:0016579;protein deubiquitination;0.0231564930003227!GO:0051920;peroxiredoxin activity;0.0231612836142009!GO:0042175;nuclear envelope-endoplasmic reticulum network;0.0232995595356233!GO:0000209;protein polyubiquitination;0.0237141817658323!GO:0004428;inositol or phosphatidylinositol kinase activity;0.0237141817658323!GO:0030660;Golgi-associated vesicle membrane;0.0237732946138521!GO:0016566;specific transcriptional repressor activity;0.0244131229708997!GO:0016251;general RNA polymerase II transcription factor activity;0.0246208131733342!GO:0043021;ribonucleoprotein binding;0.0248203370908062!GO:0009719;response to endogenous stimulus;0.0255971184501192!GO:0030134;ER to Golgi transport vesicle;0.0256803154851169!GO:0006405;RNA export from nucleus;0.0257809863287895!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0260752389918839!GO:0000062;acyl-CoA binding;0.0262303854947008!GO:0012506;vesicle membrane;0.0268010012079755!GO:0019903;protein phosphatase binding;0.0270262230529103!GO:0051789;response to protein stimulus;0.0274923177318135!GO:0006986;response to unfolded protein;0.0274923177318135!GO:0051539;4 iron, 4 sulfur cluster binding;0.0275570165812849!GO:0005789;endoplasmic reticulum membrane;0.0277094483149675!GO:0006399;tRNA metabolic process;0.0282273571147536!GO:0005100;Rho GTPase activator activity;0.0287539130606986!GO:0012501;programmed cell death;0.0291666557803649!GO:0030137;COPI-coated vesicle;0.0293491972913147!GO:0030521;androgen receptor signaling pathway;0.030050195487488!GO:0016836;hydro-lyase activity;0.0305851379095517!GO:0006414;translational elongation;0.0311137374742262!GO:0045055;regulated secretory pathway;0.0313171214882758!GO:0005741;mitochondrial outer membrane;0.0321406617048771!GO:0019207;kinase regulator activity;0.0322028095715817!GO:0004860;protein kinase inhibitor activity;0.033006775756202!GO:0032535;regulation of cellular component size;0.033006775756202!GO:0006915;apoptosis;0.033006775756202!GO:0005773;vacuole;0.0330517774571603!GO:0006364;rRNA processing;0.0330517774571603!GO:0005048;signal sequence binding;0.0339235837970617!GO:0042802;identical protein binding;0.0343215012620834!GO:0016079;synaptic vesicle exocytosis;0.035119643741709!GO:0046872;metal ion binding;0.0351914981344805!GO:0019888;protein phosphatase regulator activity;0.0356812432760051!GO:0016279;protein-lysine N-methyltransferase activity;0.0357277272272959!GO:0018024;histone-lysine N-methyltransferase activity;0.0357277272272959!GO:0016278;lysine N-methyltransferase activity;0.0357277272272959!GO:0001578;microtubule bundle formation;0.0357706372888004!GO:0031902;late endosome membrane;0.0369154486000129!GO:0046839;phospholipid dephosphorylation;0.0370714802828734!GO:0000902;cell morphogenesis;0.0378120864352978!GO:0032989;cellular structure morphogenesis;0.0378120864352978!GO:0008312;7S RNA binding;0.037865661851571!GO:0043560;insulin receptor substrate binding;0.038426111540023!GO:0007034;vacuolar transport;0.0385192628722273!GO:0006916;anti-apoptosis;0.0395676765235999!GO:0017016;Ras GTPase binding;0.0395676765235999!GO:0006352;transcription initiation;0.0398712030789845!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0398942987756293!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.040038079314716!GO:0045047;protein targeting to ER;0.040038079314716!GO:0051287;NAD binding;0.0404192740734661!GO:0031267;small GTPase binding;0.0405029922200045!GO:0008361;regulation of cell size;0.0405403230524098!GO:0032320;positive regulation of Ras GTPase activity;0.04083505881134!GO:0045941;positive regulation of transcription;0.0413015904509678!GO:0003785;actin monomer binding;0.0422483579508498!GO:0018409;peptide or protein amino-terminal blocking;0.0422614287808198!GO:0015071;protein phosphatase type 2C activity;0.0422992834917734!GO:0005545;phosphatidylinositol binding;0.0431472734222216!GO:0004402;histone acetyltransferase activity;0.0434271993928208!GO:0004468;lysine N-acetyltransferase activity;0.0434271993928208!GO:0043086;negative regulation of catalytic activity;0.0435062332633598!GO:0000785;chromatin;0.044240606557741!GO:0001508;regulation of action potential;0.0442718751887199!GO:0042054;histone methyltransferase activity;0.0443096424792392!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0446814110953156!GO:0051020;GTPase binding;0.0448337295631445!GO:0007266;Rho protein signal transduction;0.0450471729723262!GO:0016072;rRNA metabolic process;0.0456700672977665!GO:0006378;mRNA polyadenylation;0.0464008652387422!GO:0016779;nucleotidyltransferase activity;0.0467212408648495!GO:0000287;magnesium ion binding;0.0469906823164032!GO:0030127;COPII vesicle coat;0.0477939989139502!GO:0012507;ER to Golgi transport vesicle membrane;0.0477939989139502!GO:0044433;cytoplasmic vesicle part;0.0479015906815163!GO:0006665;sphingolipid metabolic process;0.0483139451574991!GO:0031365;N-terminal protein amino acid modification;0.0492496283015018!GO:0050767;regulation of neurogenesis;0.049271873189858!GO:0042585;germinal vesicle;0.049271873189858!GO:0004672;protein kinase activity;0.0493338929667618!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0496102900175595 | |||
|sample_id=10166 | |sample_id=10166 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 104: | ||
|sample_tissue=cerebellum | |sample_tissue=cerebellum | ||
|top_motifs=CUX2:4.21300666186;ZFP161:4.02000292325;REST:3.81158405336;AHR_ARNT_ARNT2:3.6944116877;FOXM1:3.6021786578;MED-1{core}:3.47623753186;RREB1:3.36240170454;RORA:3.33565401713;FOX{I1,J2}:3.23547363542;MZF1:3.22168560823;POU6F1:3.18695484596;DBP:3.16282764083;ARID5B:3.1095577716;PRDM1:3.09433455395;PAX4:3.0134059983;MYFfamily:2.99425227763;ALX1:2.97991882175;ATF2:2.86606739696;GTF2I:2.84994448512;EGR1..3:2.83195846136;FOXQ1:2.80321190374;BREu{core}:2.77312776933;HMGA1,2:2.69402603766;POU3F1..4:2.68904645283;ZBTB6:2.67304059993;NRF1:2.63528856044;PATZ1:2.58776116382;PAX6:2.50982626866;FOXP1:2.47417571147;NHLH1,2:2.42068704593;LMO2:2.36081872016;TFAP2B:2.36057640495;MTE{core}:2.3094128643;GATA4:2.28893588685;BPTF:2.27920424118;CDC5L:2.21938195547;SOX5:2.19723556834;GCM1,2:2.19356684995;POU5F1:2.17201113885;ADNP_IRX_SIX_ZHX:2.17065721162;RBPJ:2.1519993201;OCT4_SOX2{dimer}:2.15191203459;MTF1:2.11913255358;TOPORS:2.09999882572;NFIX:2.09965753395;STAT1,3:2.06761848341;TGIF1:2.04672083671;NFIL3:1.99021140719;HIC1:1.98594038225;IKZF2:1.93392163432;SOX{8,9,10}:1.91562460435;KLF4:1.83335279566;ONECUT1,2:1.7678678063;SOX2:1.73810647749;RFX2..5_RFXANK_RFXAP:1.71768830249;FOXO1,3,4:1.69931081391;SMAD1..7,9:1.66842857665;HOXA9_MEIS1:1.66146408631;GFI1B:1.6504492614;ZNF143:1.64804608824;MAZ:1.6320560025;FOX{D1,D2}:1.62940238879;AR:1.62892378633;EP300:1.38149345136;MYOD1:1.36671984468;RFX1:1.35817266325;PDX1:1.31671742523;YY1:1.27713605113;PAX5:1.23972522853;NKX3-2:1.20319435348;ZNF423:1.18364248542;POU1F1:1.16141357766;FOX{F1,F2,J1}:1.15960423678;TEF:1.15137109652;TFDP1:1.08261559085;PRRX1,2:1.05632159113;MEF2{A,B,C,D}:0.987715730829;NFY{A,B,C}:0.987070765669;TLX1..3_NFIC{dimer}:0.984248120899;ZBTB16:0.965886601982;SP1:0.940829385956;ZEB1:0.890202467557;HOX{A4,D4}:0.872147242166;SPZ1:0.869697827613;SREBF1,2:0.85766609242;MYBL2:0.832803300994;XBP1:0.801993423199;JUN:0.75801000005;FOXN1:0.74135379259;NR3C1:0.739683898888;NKX2-3_NKX2-5:0.730757305943;ATF5_CREB3:0.725441953615;GTF2A1,2:0.702096123726;ZNF384:0.676351731036;GZF1:0.669788395999;ZIC1..3:0.666327710698;GFI1:0.642430381468;HAND1,2:0.620690935122;LEF1_TCF7_TCF7L1,2:0.608622362168;SOX17:0.601027198342;PITX1..3:0.583960686006;XCPE1{core}:0.542952265666;MAFB:0.518309665673;FOXL1:0.496374516671;NANOG:0.479352187239;CREB1:0.39368322696;FOXA2:0.352860213594;TFAP2{A,C}:0.318004698455;EVI1:0.281118375533;PAX2:0.267772444333;NKX2-1,4:0.251806059215;TLX2:0.249429667248;AIRE:0.224519662245;PAX3,7:0.182066331382;VSX1,2:0.167967661772;CRX:0.15450250334;ESRRA:0.1489643657;NFATC1..3:0.0674040460166;FOXD3:0.0671401603875;LHX3,4:0.0274408439194;T:0.00951897170992;UFEwm:-0.0130112030954;HBP1_HMGB_SSRP1_UBTF:-0.0978275120093;FOXP3:-0.10019512242;SNAI1..3:-0.103430729452;ATF6:-0.11876732668;ATF4:-0.119704421405;PAX1,9:-0.187476464943;NKX6-1,2:-0.252356367165;HMX1:-0.294704585751;IRF7:-0.365648523942;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.481038090898;ESR1:-0.489943622738;EBF1:-0.491182017879;SPIB:-0.522163498033;PAX8:-0.5303073931;ZNF238:-0.542777814048;IRF1,2:-0.575769938429;NANOG{mouse}:-0.588939539134;HIF1A:-0.636427085753;HOX{A6,A7,B6,B7}:-0.719864409527;HSF1,2:-0.738981437916;CDX1,2,4:-0.766719358057;NFE2L2:-0.771237276182;SPI1:-0.774748572699;E2F1..5:-0.83414235455;PBX1:-0.834718113561;TEAD1:-0.85817061064;GATA6:-0.872932613938;NFE2:-0.882251508664;TFCP2:-0.885202661965;DMAP1_NCOR{1,2}_SMARC:-0.917112504923;TAL1_TCF{3,4,12}:-0.946057854964;NFE2L1:-0.963992130102;STAT2,4,6:-0.973032767012;HNF4A_NR2F1,2:-1.00155096705;HNF1A:-1.01617637565;FOSL2:-1.01839362642;STAT5{A,B}:-1.02390769901;IKZF1:-1.05068059674;HOX{A5,B5}:-1.10185321678;ELK1,4_GABP{A,B1}:-1.12591761507;NKX3-1:-1.13081405117;ETS1,2:-1.13142458582;PPARG:-1.15822483963;NR5A1,2:-1.18037293215;CEBPA,B_DDIT3:-1.20134770841;NFKB1_REL_RELA:-1.20301152746;TP53:-1.23223653676;TFAP4:-1.24335696003;FOS_FOS{B,L1}_JUN{B,D}:-1.28533537507;bHLH_family:-1.2966393211;POU2F1..3:-1.30610532228;RUNX1..3:-1.36683810653;BACH2:-1.37139978693;HLF:-1.50610612483;ELF1,2,4:-1.52654597712;RXR{A,B,G}:-1.58958196125;RXRA_VDR{dimer}:-1.64131144941;MYB:-1.65624418348;HES1:-1.79921677213;ALX4:-1.84837166239;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.94990722747;SRF:-2.04451175345;GLI1..3:-2.19763726309;NKX2-2,8:-2.23783764487;ZNF148:-2.36512261713;NR6A1:-2.43849489977;TBP:-2.50532483752;TBX4,5:-2.57481086419;NR1H4:-2.81525489974;EN1,2:-3.10954304266 | |top_motifs=CUX2:4.21300666186;ZFP161:4.02000292325;REST:3.81158405336;AHR_ARNT_ARNT2:3.6944116877;FOXM1:3.6021786578;MED-1{core}:3.47623753186;RREB1:3.36240170454;RORA:3.33565401713;FOX{I1,J2}:3.23547363542;MZF1:3.22168560823;POU6F1:3.18695484596;DBP:3.16282764083;ARID5B:3.1095577716;PRDM1:3.09433455395;PAX4:3.0134059983;MYFfamily:2.99425227763;ALX1:2.97991882175;ATF2:2.86606739696;GTF2I:2.84994448512;EGR1..3:2.83195846136;FOXQ1:2.80321190374;BREu{core}:2.77312776933;HMGA1,2:2.69402603766;POU3F1..4:2.68904645283;ZBTB6:2.67304059993;NRF1:2.63528856044;PATZ1:2.58776116382;PAX6:2.50982626866;FOXP1:2.47417571147;NHLH1,2:2.42068704593;LMO2:2.36081872016;TFAP2B:2.36057640495;MTE{core}:2.3094128643;GATA4:2.28893588685;BPTF:2.27920424118;CDC5L:2.21938195547;SOX5:2.19723556834;GCM1,2:2.19356684995;POU5F1:2.17201113885;ADNP_IRX_SIX_ZHX:2.17065721162;RBPJ:2.1519993201;OCT4_SOX2{dimer}:2.15191203459;MTF1:2.11913255358;TOPORS:2.09999882572;NFIX:2.09965753395;STAT1,3:2.06761848341;TGIF1:2.04672083671;NFIL3:1.99021140719;HIC1:1.98594038225;IKZF2:1.93392163432;SOX{8,9,10}:1.91562460435;KLF4:1.83335279566;ONECUT1,2:1.7678678063;SOX2:1.73810647749;RFX2..5_RFXANK_RFXAP:1.71768830249;FOXO1,3,4:1.69931081391;SMAD1..7,9:1.66842857665;HOXA9_MEIS1:1.66146408631;GFI1B:1.6504492614;ZNF143:1.64804608824;MAZ:1.6320560025;FOX{D1,D2}:1.62940238879;AR:1.62892378633;EP300:1.38149345136;MYOD1:1.36671984468;RFX1:1.35817266325;PDX1:1.31671742523;YY1:1.27713605113;PAX5:1.23972522853;NKX3-2:1.20319435348;ZNF423:1.18364248542;POU1F1:1.16141357766;FOX{F1,F2,J1}:1.15960423678;TEF:1.15137109652;TFDP1:1.08261559085;PRRX1,2:1.05632159113;MEF2{A,B,C,D}:0.987715730829;NFY{A,B,C}:0.987070765669;TLX1..3_NFIC{dimer}:0.984248120899;ZBTB16:0.965886601982;SP1:0.940829385956;ZEB1:0.890202467557;HOX{A4,D4}:0.872147242166;SPZ1:0.869697827613;SREBF1,2:0.85766609242;MYBL2:0.832803300994;XBP1:0.801993423199;JUN:0.75801000005;FOXN1:0.74135379259;NR3C1:0.739683898888;NKX2-3_NKX2-5:0.730757305943;ATF5_CREB3:0.725441953615;GTF2A1,2:0.702096123726;ZNF384:0.676351731036;GZF1:0.669788395999;ZIC1..3:0.666327710698;GFI1:0.642430381468;HAND1,2:0.620690935122;LEF1_TCF7_TCF7L1,2:0.608622362168;SOX17:0.601027198342;PITX1..3:0.583960686006;XCPE1{core}:0.542952265666;MAFB:0.518309665673;FOXL1:0.496374516671;NANOG:0.479352187239;CREB1:0.39368322696;FOXA2:0.352860213594;TFAP2{A,C}:0.318004698455;EVI1:0.281118375533;PAX2:0.267772444333;NKX2-1,4:0.251806059215;TLX2:0.249429667248;AIRE:0.224519662245;PAX3,7:0.182066331382;VSX1,2:0.167967661772;CRX:0.15450250334;ESRRA:0.1489643657;NFATC1..3:0.0674040460166;FOXD3:0.0671401603875;LHX3,4:0.0274408439194;T:0.00951897170992;UFEwm:-0.0130112030954;HBP1_HMGB_SSRP1_UBTF:-0.0978275120093;FOXP3:-0.10019512242;SNAI1..3:-0.103430729452;ATF6:-0.11876732668;ATF4:-0.119704421405;PAX1,9:-0.187476464943;NKX6-1,2:-0.252356367165;HMX1:-0.294704585751;IRF7:-0.365648523942;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.481038090898;ESR1:-0.489943622738;EBF1:-0.491182017879;SPIB:-0.522163498033;PAX8:-0.5303073931;ZNF238:-0.542777814048;IRF1,2:-0.575769938429;NANOG{mouse}:-0.588939539134;HIF1A:-0.636427085753;HOX{A6,A7,B6,B7}:-0.719864409527;HSF1,2:-0.738981437916;CDX1,2,4:-0.766719358057;NFE2L2:-0.771237276182;SPI1:-0.774748572699;E2F1..5:-0.83414235455;PBX1:-0.834718113561;TEAD1:-0.85817061064;GATA6:-0.872932613938;NFE2:-0.882251508664;TFCP2:-0.885202661965;DMAP1_NCOR{1,2}_SMARC:-0.917112504923;TAL1_TCF{3,4,12}:-0.946057854964;NFE2L1:-0.963992130102;STAT2,4,6:-0.973032767012;HNF4A_NR2F1,2:-1.00155096705;HNF1A:-1.01617637565;FOSL2:-1.01839362642;STAT5{A,B}:-1.02390769901;IKZF1:-1.05068059674;HOX{A5,B5}:-1.10185321678;ELK1,4_GABP{A,B1}:-1.12591761507;NKX3-1:-1.13081405117;ETS1,2:-1.13142458582;PPARG:-1.15822483963;NR5A1,2:-1.18037293215;CEBPA,B_DDIT3:-1.20134770841;NFKB1_REL_RELA:-1.20301152746;TP53:-1.23223653676;TFAP4:-1.24335696003;FOS_FOS{B,L1}_JUN{B,D}:-1.28533537507;bHLH_family:-1.2966393211;POU2F1..3:-1.30610532228;RUNX1..3:-1.36683810653;BACH2:-1.37139978693;HLF:-1.50610612483;ELF1,2,4:-1.52654597712;RXR{A,B,G}:-1.58958196125;RXRA_VDR{dimer}:-1.64131144941;MYB:-1.65624418348;HES1:-1.79921677213;ALX4:-1.84837166239;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.94990722747;SRF:-2.04451175345;GLI1..3:-2.19763726309;NKX2-2,8:-2.23783764487;ZNF148:-2.36512261713;NR6A1:-2.43849489977;TBP:-2.50532483752;TBX4,5:-2.57481086419;NR1H4:-2.81525489974;EN1,2:-3.10954304266 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10166-103B4;search_select_hide=table117:FF:10166-103B4 | |||
}} | }} | ||
Latest revision as of 12:24, 3 June 2020
| Name: | cerebellum, adult, donor10252 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs12323 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| HumanCAGEScan Download raw sequence, BAM & CTSS | ||||||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12323
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs12323
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0506 |
| 10 | 10 | 0.0776 |
| 100 | 100 | 0.482 |
| 101 | 101 | 0.814 |
| 102 | 102 | 0.608 |
| 103 | 103 | 0.0604 |
| 104 | 104 | 0.123 |
| 105 | 105 | 0.163 |
| 106 | 106 | 0.0111 |
| 107 | 107 | 0.0395 |
| 108 | 108 | 0.717 |
| 109 | 109 | 0.00233 |
| 11 | 11 | 0.0179 |
| 110 | 110 | 0.0581 |
| 111 | 111 | 0.362 |
| 112 | 112 | 0.372 |
| 113 | 113 | 0.366 |
| 114 | 114 | 0.188 |
| 115 | 115 | 0.994 |
| 116 | 116 | 0.207 |
| 117 | 117 | 0.0165 |
| 118 | 118 | 0.274 |
| 119 | 119 | 0.298 |
| 12 | 12 | 0.748 |
| 120 | 120 | 0.156 |
| 121 | 121 | 0.673 |
| 122 | 122 | 0.904 |
| 123 | 123 | 0.304 |
| 124 | 124 | 0.381 |
| 125 | 125 | 0.292 |
| 126 | 126 | 0.0459 |
| 127 | 127 | 0.389 |
| 128 | 128 | 0.148 |
| 129 | 129 | 0.435 |
| 13 | 13 | 0.00412 |
| 130 | 130 | 0.155 |
| 131 | 131 | 0.288 |
| 132 | 132 | 0.738 |
| 133 | 133 | 0.372 |
| 134 | 134 | 0.501 |
| 135 | 135 | 0.703 |
| 136 | 136 | 0.00277 |
| 137 | 137 | 0.558 |
| 138 | 138 | 0.825 |
| 139 | 139 | 0.118 |
| 14 | 14 | 0.71 |
| 140 | 140 | 0.754 |
| 141 | 141 | 0.575 |
| 142 | 142 | 0.795 |
| 143 | 143 | 0.0624 |
| 144 | 144 | 0.959 |
| 145 | 145 | 0.226 |
| 146 | 146 | 0.537 |
| 147 | 147 | 0.901 |
| 148 | 148 | 0.0195 |
| 149 | 149 | 0.0737 |
| 15 | 15 | 0.0936 |
| 150 | 150 | 0.223 |
| 151 | 151 | 0.65 |
| 152 | 152 | 0.0306 |
| 153 | 153 | 0.982 |
| 154 | 154 | 0.624 |
| 155 | 155 | 0.516 |
| 156 | 156 | 0.579 |
| 157 | 157 | 0.353 |
| 158 | 158 | 0.0409 |
| 159 | 159 | 0.00616 |
| 16 | 16 | 0.0597 |
| 160 | 160 | 0.215 |
| 161 | 161 | 0.298 |
| 162 | 162 | 0.768 |
| 163 | 163 | 0.828 |
| 164 | 164 | 0.0852 |
| 165 | 165 | 0.0763 |
| 166 | 166 | 0.703 |
| 167 | 167 | 0.888 |
| 168 | 168 | 0.322 |
| 169 | 169 | 0.0197 |
| 17 | 17 | 0.0887 |
| 18 | 18 | 0.141 |
| 19 | 19 | 0.234 |
| 2 | 2 | 0.77 |
| 20 | 20 | 0.318 |
| 21 | 21 | 0.0707 |
| 22 | 22 | 0.202 |
| 23 | 23 | 0.164 |
| 24 | 24 | 0.0504 |
| 25 | 25 | 0.499 |
| 26 | 26 | 0.00113 |
| 27 | 27 | 0.494 |
| 28 | 28 | 0.767 |
| 29 | 29 | 0.0218 |
| 3 | 3 | 0.0559 |
| 30 | 30 | 0.923 |
| 31 | 31 | 0.897 |
| 32 | 32 | 0.0486 |
| 33 | 33 | 0.0604 |
| 34 | 34 | 0.554 |
| 35 | 35 | 0.763 |
| 36 | 36 | 0.202 |
| 37 | 37 | 0.0412 |
| 38 | 38 | 0.345 |
| 39 | 39 | 0.169 |
| 4 | 4 | 0.849 |
| 40 | 40 | 0.0493 |
| 41 | 41 | 0.224 |
| 42 | 42 | 0.243 |
| 43 | 43 | 0.113 |
| 44 | 44 | 0.182 |
| 45 | 45 | 0.652 |
| 46 | 46 | 0.0556 |
| 47 | 47 | 0.0535 |
| 48 | 48 | 0.0919 |
| 49 | 49 | 0.271 |
| 5 | 5 | 0.463 |
| 50 | 50 | 0.359 |
| 51 | 51 | 0.4 |
| 52 | 52 | 0.294 |
| 53 | 53 | 0.848 |
| 54 | 54 | 0.387 |
| 55 | 55 | 0.616 |
| 56 | 56 | 0.362 |
| 57 | 57 | 0.367 |
| 58 | 58 | 0.344 |
| 59 | 59 | 0.0396 |
| 6 | 6 | 0.959 |
| 60 | 60 | 0.0353 |
| 61 | 61 | 0.0734 |
| 62 | 62 | 0.147 |
| 63 | 63 | 0.136 |
| 64 | 64 | 0.29 |
| 65 | 65 | 0.225 |
| 66 | 66 | 0.272 |
| 67 | 67 | 0.43 |
| 68 | 68 | 0.164 |
| 69 | 69 | 0.355 |
| 7 | 7 | 0.0619 |
| 70 | 70 | 0.0165 |
| 71 | 71 | 0.0131 |
| 72 | 72 | 0.313 |
| 73 | 73 | 0.0187 |
| 74 | 74 | 0.84 |
| 75 | 75 | 0.0573 |
| 76 | 76 | 0.486 |
| 77 | 77 | 0.103 |
| 78 | 78 | 0.0308 |
| 79 | 79 | 0.349 |
| 8 | 8 | 0.0311 |
| 80 | 80 | 0.198 |
| 81 | 81 | 0.421 |
| 82 | 82 | 0.478 |
| 83 | 83 | 0.0259 |
| 84 | 84 | 0.697 |
| 85 | 85 | 0.121 |
| 86 | 86 | 0.246 |
| 87 | 87 | 2.3479e-4 |
| 88 | 88 | 0.83 |
| 89 | 89 | 0.19 |
| 9 | 9 | 0.33 |
| 90 | 90 | 0.0782 |
| 91 | 91 | 0.773 |
| 92 | 92 | 0.391 |
| 93 | 93 | 0.942 |
| 94 | 94 | 0.186 |
| 95 | 95 | 0.012 |
| 96 | 96 | 0.883 |
| 97 | 97 | 0.665 |
| 98 | 98 | 0.379 |
| 99 | 99 | 0.407 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs12323
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000002 in vivo cell sample
FF:0010083 human cerebellum - adult sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0002037 (cerebellum)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002680 (regional part of metencephalon)
0002616 (regional part of brain)
0004733 (segmental subdivision of hindbrain)
0004732 (segmental subdivision of nervous system)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001895 (metencephalon)
0002028 (hindbrain)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010083 (human cerebellum - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006215 (rhombic lip)
UBERON:0010316 (germ layer / neural crest)
