FF:10173-103C2: Difference between revisions

Latest revision as of 12:25, 3 June 2020

Name:	cerebellum - adult, donor10196
Species:	Human (Homo sapiens)
Library ID:	CNhs13799
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	cerebellum
dev stage	NA
sex	female
age	60
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	Peter Heutink
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005550

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13799		CAGE		DRX008631		DRR009503

Accession ID Hg19

Library id		BAM		CTSS
CNhs13799		DRZ000928		DRZ002313

Accession ID Hg38

Library id		BAM		CTSS
CNhs13799		DRZ012278		DRZ013663

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.284
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.361
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0.746
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	1.007
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.387
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.437
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.22
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.263
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.671
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.746
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0.608
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0.402
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.0669
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0.608
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0.402
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.573
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.366
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	1.405
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0.402
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0.608
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13799

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0573
MA0003.1	MA0003.1	0.233
MA0004.1	MA0004.1	0.21
MA0006.1	MA0006.1	0.153
MA0007.1	MA0007.1	0.263
MA0009.1	MA0009.1	0.384
MA0014.1	MA0014.1	0.639
MA0017.1	MA0017.1	0.0122
MA0018.2	MA0018.2	0.0412
MA0019.1	MA0019.1	0.961
MA0024.1	MA0024.1	0.413
MA0025.1	MA0025.1	0.104
MA0027.1	MA0027.1	0.982
MA0028.1	MA0028.1	0.11
MA0029.1	MA0029.1	0.212
MA0030.1	MA0030.1	0.349
MA0031.1	MA0031.1	0.476
MA0035.2	MA0035.2	0.0735
MA0038.1	MA0038.1	0.112
MA0039.2	MA0039.2	0.15
MA0040.1	MA0040.1	0.97
MA0041.1	MA0041.1	0.167
MA0042.1	MA0042.1	0.42
MA0043.1	MA0043.1	0.623
MA0046.1	MA0046.1	0.129
MA0047.2	MA0047.2	0.111
MA0048.1	MA0048.1	0.241
MA0050.1	MA0050.1	1.22879e-4
MA0051.1	MA0051.1	0.00257
MA0052.1	MA0052.1	0.186
MA0055.1	MA0055.1	0.0396
MA0057.1	MA0057.1	0.453
MA0058.1	MA0058.1	0.227
MA0059.1	MA0059.1	0.063
MA0060.1	MA0060.1	0.0303
MA0061.1	MA0061.1	0.0121
MA0062.2	MA0062.2	0.00263
MA0065.2	MA0065.2	0.00239
MA0066.1	MA0066.1	0.129
MA0067.1	MA0067.1	0.701
MA0068.1	MA0068.1	0.636
MA0069.1	MA0069.1	0.916
MA0070.1	MA0070.1	0.411
MA0071.1	MA0071.1	0.255
MA0072.1	MA0072.1	0.427
MA0073.1	MA0073.1	0.243
MA0074.1	MA0074.1	0.287
MA0076.1	MA0076.1	0.172
MA0077.1	MA0077.1	0.662
MA0078.1	MA0078.1	0.764
MA0079.2	MA0079.2	0.693
MA0080.2	MA0080.2	1.50382e-9
MA0081.1	MA0081.1	0.0617
MA0083.1	MA0083.1	0.00119
MA0084.1	MA0084.1	0.852
MA0087.1	MA0087.1	0.85
MA0088.1	MA0088.1	0.496
MA0090.1	MA0090.1	0.0365
MA0091.1	MA0091.1	0.624
MA0092.1	MA0092.1	0.448
MA0093.1	MA0093.1	0.233
MA0099.2	MA0099.2	1.60268e-16
MA0100.1	MA0100.1	0.738
MA0101.1	MA0101.1	0.00407
MA0102.2	MA0102.2	0.0373
MA0103.1	MA0103.1	0.564
MA0104.2	MA0104.2	0.739
MA0105.1	MA0105.1	0.0116
MA0106.1	MA0106.1	0.0266
MA0107.1	MA0107.1	0.00402
MA0108.2	MA0108.2	0.108
MA0111.1	MA0111.1	0.724
MA0112.2	MA0112.2	0.0037
MA0113.1	MA0113.1	0.477
MA0114.1	MA0114.1	0.00682
MA0115.1	MA0115.1	0.689
MA0116.1	MA0116.1	0.0188
MA0117.1	MA0117.1	0.895
MA0119.1	MA0119.1	0.157
MA0122.1	MA0122.1	0.409
MA0124.1	MA0124.1	0.757
MA0125.1	MA0125.1	0.205
MA0131.1	MA0131.1	0.895
MA0135.1	MA0135.1	0.0785
MA0136.1	MA0136.1	2.85012e-13
MA0137.2	MA0137.2	0.511
MA0138.2	MA0138.2	0.108
MA0139.1	MA0139.1	0.795
MA0140.1	MA0140.1	0.0449
MA0141.1	MA0141.1	0.0214
MA0142.1	MA0142.1	0.138
MA0143.1	MA0143.1	0.129
MA0144.1	MA0144.1	0.375
MA0145.1	MA0145.1	0.141
MA0146.1	MA0146.1	0.0247
MA0147.1	MA0147.1	0.535
MA0148.1	MA0148.1	0.138
MA0149.1	MA0149.1	0.0681
MA0150.1	MA0150.1	4.57065e-4
MA0152.1	MA0152.1	0.494
MA0153.1	MA0153.1	0.364
MA0154.1	MA0154.1	0.0746
MA0155.1	MA0155.1	0.306
MA0156.1	MA0156.1	1.33623e-8
MA0157.1	MA0157.1	0.92
MA0159.1	MA0159.1	0.00534
MA0160.1	MA0160.1	0.106
MA0162.1	MA0162.1	0.101
MA0163.1	MA0163.1	2.80036e-4
MA0164.1	MA0164.1	0.809
MA0258.1	MA0258.1	0.0442
MA0259.1	MA0259.1	0.967

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13799

Novel motif	Logo	P-value
1	1	0.0791
10	10	0.073
100	100	0.404
101	101	0.677
102	102	0.551
103	103	0.0538
104	104	0.0625
105	105	0.121
106	106	0.00472
107	107	0.0227
108	108	0.978
109	109	9.90449e-4
11	11	0.0195
110	110	0.0845
111	111	0.372
112	112	0.698
113	113	0.316
114	114	0.271
115	115	0.759
116	116	0.139
117	117	0.00916
118	118	0.248
119	119	0.481
12	12	0.748
120	120	0.176
121	121	0.343
122	122	0.674
123	123	0.627
124	124	0.2
125	125	0.559
126	126	0.047
127	127	0.586
128	128	0.165
129	129	0.597
13	13	7.009e-4
130	130	0.13
131	131	0.0946
132	132	0.91
133	133	0.0238
134	134	0.516
135	135	0.415
136	136	7.97203e-4
137	137	0.348
138	138	0.83
139	139	0.266
14	14	0.615
140	140	0.676
141	141	0.837
142	142	0.394
143	143	0.0731
144	144	0.875
145	145	0.096
146	146	0.391
147	147	0.885
148	148	0.0306
149	149	0.123
15	15	0.0718
150	150	0.171
151	151	0.668
152	152	0.0135
153	153	0.99
154	154	0.706
155	155	0.426
156	156	0.927
157	157	0.343
158	158	0.0714
159	159	0.0328
16	16	0.0794
160	160	0.201
161	161	0.282
162	162	0.819
163	163	0.982
164	164	0.0218
165	165	0.0326
166	166	0.645
167	167	0.963
168	168	0.516
169	169	0.0228
17	17	0.0764
18	18	0.253
19	19	0.29
2	2	0.783
20	20	0.156
21	21	0.024
22	22	0.173
23	23	0.195
24	24	0.0418
25	25	0.54
26	26	4.09607e-5
27	27	0.841
28	28	0.869
29	29	0.0296
3	3	0.0502
30	30	0.964
31	31	0.962
32	32	0.0251
33	33	0.0594
34	34	0.598
35	35	0.88
36	36	0.325
37	37	0.0242
38	38	0.368
39	39	0.118
4	4	0.933
40	40	0.0598
41	41	0.452
42	42	0.359
43	43	0.128
44	44	0.178
45	45	0.722
46	46	0.0571
47	47	0.0805
48	48	0.0463
49	49	0.274
5	5	0.795
50	50	0.164
51	51	0.496
52	52	0.242
53	53	0.913
54	54	0.364
55	55	0.606
56	56	0.329
57	57	0.39
58	58	0.459
59	59	0.0494
6	6	0.816
60	60	0.0172
61	61	0.0646
62	62	0.231
63	63	0.083
64	64	0.401
65	65	0.294
66	66	0.252
67	67	0.324
68	68	0.326
69	69	0.337
7	7	0.0505
70	70	0.013
71	71	0.0128
72	72	0.259
73	73	0.00901
74	74	0.868
75	75	0.0526
76	76	0.418
77	77	0.0582
78	78	0.0218
79	79	0.346
8	8	0.0242
80	80	0.202
81	81	0.535
82	82	0.805
83	83	0.119
84	84	0.544
85	85	0.122
86	86	0.24
87	87	2.38143e-4
88	88	0.847
89	89	0.274
9	9	0.398
90	90	0.298
91	91	0.98
92	92	0.702
93	93	0.398
94	94	0.414
95	95	0.00769
96	96	0.898
97	97	0.686
98	98	0.721
99	99	0.228

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13799

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
FF:0010083 human cerebellum - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0002037 (cerebellum)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002680 (regional part of metencephalon)
0002616 (regional part of brain)
0004733 (segmental subdivision of hindbrain)
0004732 (segmental subdivision of nervous system)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001895 (metencephalon)
0002028 (hindbrain)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010083 (human cerebellum - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006215 (rhombic lip)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000922,UBERON:0000955,UBERON:0002037,UBERON:0000483,UBERON:0000033,UBERON:0000479,UBERON:0002346,UBERON:0000064,UBERON:0000073,UBERON:0004121,UBERON:0000062,UBERON:0004111,UBERON:0000475,UBERON:0000025,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000477,UBERON:0000481,UBERON:0000467,UBERON:0002616,UBERON:0001062,UBERON:0000119,UBERON:0005291,UBERON:0002680,UBERON:0004733,UBERON:0004732,UBERON:0001048,UBERON:0006598,UBERON:0002532,UBERON:0001017,UBERON:0001016,UBERON:0000153,UBERON:0007811,UBERON:0000924,UBERON:0005743,UBERON:0001895,UBERON:0002028,UBERON:0003075,UBERON:0001049,UBERON:0006238,UBERON:0006601,UBERON:0005068,UBERON:0006241,UBERON:0010092,UBERON:0003076,UBERON:0007277,UBERON:0006215,UBERON:0007284,UBERON:0003057,UBERON:0007135
+|DRA_sample_Accession=CAGE@SAMD00005550
+|accession_numbers=CAGE;DRX008631;DRR009503;DRZ000928;DRZ002313;DRZ012278;DRZ013663
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0002037,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002680,UBERON:0002616,UBERON:0004733,UBERON:0004732,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001895,UBERON:0002028
 |ancestors_in_cell_lineage_facet=
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010083
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr3:147127142..147127168,+!p1@ZIC1!2.65!448.59!ZIC1;;chr2:182545234..182545252,-!p1@NEUROD1!2.52!328.05!NEUROD1;;chr1:244214577..244214593,+!p1@ZNF238!2.50!314.32!ZNF238;;chr3:147127177..147127194,+!p2@ZIC1!2.36!225.82!ZIC1;;chr11:31832658..31832681,-!p1@PAX6!2.33!212.09!PAX6;;chr9:114287433..114287513,+!p1@ZNF483!2.22!411.97!ZNF483;;chr13:100634031..100634045,+!p1@ZIC2!2.21!160.21!ZIC2;;chr17:37764128..37764258,-!p1@NEUROD2!2.19!152.58!NEUROD2;;chr19:13135582..13135600,+!p3@NFIX!2.14!135.80!NFIX;;chr7:155250249..155250278,+!p@chr7:155250249..155250278,+!2.01!102.23!EN2;;chr3:22414241..22414278,-!p5@ZNF385D!2.00!99.18!ZNF385D;;chr7:100065686..100065701,-!p2@TSC22D4!1.95!88.50!TSC22D4;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.94!86.97!PEG3;;chr11:31832610..31832639,-!p5@PAX6!1.92!82.39!PAX6;;chr8:106330656..106330684,+!p1@ZFPM2!1.91!202.93!ZFPM2;;chr13:100634004..100634025,+!p2@ZIC2!1.88!74.77!ZIC2;;chr8:106330696..106330719,+!p2@ZFPM2!1.86!90.02!ZFPM2;;chr21:34442439..34442455,+!p1@OLIG1!1.86!71.71!OLIG1;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.86!71.71!SMARCE1;;chr15:31658288..31658338,+!p4@KLF13!1.84!68.66!KLF13;;chr11:31832862..31832884,-!p2@PAX6!1.84!68.66!PAX6;;chrX:136648279..136648295,+!p1@ZIC3!1.79!61.03!ZIC3;;chr7:63505799..63505904,+!p1@ZNF727!1.78!59.51!ZNF727;;chr3:22414187..22414230,-!p6@ZNF385D!1.78!59.51!ZNF385D;;chr1:214161272..214161322,+!p1@PROX1!1.77!79.34!PROX1;;chr19:57352109..57352153,-!p2@ZIM2!1.72!51.88!ZIM2;;chr19:38085768..38085821,+!p1@ZNF540!1.71!73.24!ZNF540;;chr7:14028488..14028516,-!p2@ETV1!1.71!54.93!ETV1;;chr7:14025855..14025890,-!p6@ETV1!1.67!45.77!ETV1;;chr12:26277817..26277863,-!p2@BHLHE41!1.66!59.51!BHLHE41;;chr3:181429704..181429722,+!p1@SOX2!1.66!44.25!SOX2;;chr17:53342311..53342400,+!p1@HLF!1.64!48.83!HLF;;chr13:100634130..100634143,+!p3@ZIC2!1.63!41.20!ZIC2;;chr8:53166899..53166914,-!p3@ST18!1.63!41.20!ST18;;chr18:22932080..22932170,-!p1@ZNF521!1.61!163.26!ZNF521;;chr17:35294075..35294102,+!p1@ENST00000559335!1.61!39.67!LHX1;;chr11:31832807..31832823,-!p4@PAX6!1.61!39.67!PAX6;;chr2:182545282..182545294,-!p2@NEUROD1!1.61!39.67!NEUROD1;;chr3:141105705..141105770,+!p4@ZBTB38!1.60!47.30!ZBTB38;;chr14:73360799..73360817,-!p1@DPF3!1.59!128.17!DPF3;;chr7:73038839..73038862,-!p1@MLXIPL!1.59!38.15!MLXIPL;;chr12:26277956..26277980,-!p1@BHLHE41!1.58!128.17!BHLHE41;;chr15:61521417..61521460,-!p2@RORA!1.57!79.34!RORA;;chr3:114819124..114819200,-!p3@ZBTB20!1.56!80.87!ZBTB20;;chr11:113930291..113930339,+!p2@ZBTB16!1.56!56.46!ZBTB16;;chr1:244219775..244219893,+!p2@ZNF238!1.56!47.30!ZNF238;;chr19:13135386..13135435,+!p4@NFIX!1.56!35.09!NFIX;;chr19:13135566..13135577,+!p9@NFIX!1.54!33.57!NFIX;;chr12:106976678..106976708,+!p2@RFX4!1.54!33.57!RFX4;;chr7:64342913..64342935,+!p2@ZNF273!1.54!33.57!ZNF273;;chr2:2334997..2335053,-!p1@MYT1L!1.52!32.04!MYT1L;;chr2:66662281..66662308,+!p1@MEIS1!1.51!103.76!MEIS1;;chr3:147111231..147111281,+!p3@ZIC1!1.50!30.52!ZIC1;;chr11:31832581..31832601,-!p7@PAX6!1.50!30.52!PAX6;;chrX:136648297..136648319,+!p3@ZIC3!1.50!30.52!ZIC3;;chr7:14025816..14025842,-!p9@ETV1!1.50!30.52!ETV1;;chr1:61548069..61548102,+!p3@NFIA!1.49!70.19!NFIA;;chr4:81118647..81118666,+!p1@PRDM8!1.49!39.67!PRDM8;;chr3:147114260..147114290,-!p3@ZIC4!1.48!28.99!ZIC4;;chr21:34442540..34442560,+!p2@OLIG1!1.48!28.99!OLIG1;;chr7:14026063..14026091,-!p10@ETV1!1.48!28.99!ETV1;;chr8:106330823..106330836,+!p3@ZFPM2!1.48!28.99!ZFPM2;;chr11:113930425..113930471,+!p1@ZBTB16!1.46!39.67!ZBTB16;;chr12:106976774..106976788,+!p1@RFX4!1.45!27.46!RFX4;;chr5:170736243..170736279,+!p1@TLX3!1.45!27.46!TLX3;;chr6:15401104..15401166,+!p5@JARID2!1.45!27.46!JARID2;;chr7:1272500..1272513,+!p1@UNCX!1.45!27.46!UNCX;;chr3:147124307..147124336,-!p2@ZIC4!1.45!27.46!ZIC4;;chr1:244214611..244214624,+!p4@ZNF238!1.45!27.46!ZNF238;;chr17:7492684..7492778,-!p2@SOX15!1.44!54.93!SOX15;;chr15:57511609..57511651,+!p2@TCF12!1.44!44.25!TCF12;;chr7:14028743..14028799,-!p3@ETV1!1.44!33.57!ETV1;;chr1:151032142..151032195,+!p5@MLLT11!1.43!48.83!MLLT11;;chr20:62795799..62795819,+!p1@MYT1!1.43!25.94!MYT1;;chr11:125034640..125034655,+!p1@PKNOX2!1.43!25.94!PKNOX2;;chr14:21994449..21994524,-!p2@SALL2!1.42!73.24!SALL2;;chr2:166326200..166326216,+!p1@CSRNP3!1.42!36.62!CSRNP3;;chr2:182545296..182545307,-!p3@NEUROD1!1.41!24.41!NEUROD1;;chr2:2328725..2328739,-!p5@MYT1L!1.41!24.41!MYT1L;;chr19:46801639..46801699,+!p1@HIF3A!1.41!24.41!HIF3A;;chr16:67197654..67197716,+!p3@HSF4!1.41!24.41!HSF4;;chr14:58798013..58798071,+!p2@ARID4A!1.41!24.41!ARID4A;;chr7:14029283..14029311,-!p1@ETV1!1.39!120.54!ETV1;;chr1:209979467..209979494,-!p1@IRF6!1.38!25.94!IRF6;;chr19:46800289..46800327,+!p2@HIF3A!1.38!22.89!HIF3A;;chr8:93107451..93107468,-!p2@RUNX1T1!1.38!22.89!RUNX1T1;;chr3:114173720..114173794,-!p6@ZBTB20!1.38!22.89!ZBTB20;;chr3:147111505..147111529,+!p6@ZIC1!1.38!22.89!ZIC1;;chr6:50786591..50786614,+!p1@TFAP2B!1.35!21.36!TFAP2B;;chr5:170736216..170736238,+!p2@TLX3!1.32!19.84!TLX3;;chr8:93115274..93115323,-!p4@RUNX1T1!1.32!19.84!RUNX1T1;;chr3:147139053..147139112,+!p5@ZIC1!1.32!19.84!ZIC1;;chr11:31832687..31832704,-!p6@PAX6!1.32!19.84!PAX6;;chr13:100634088..100634099,+!p5@ZIC2!1.32!19.84!ZIC2;;chr14:57277178..57277203,-!p1@OTX2!1.32!19.84!OTX2;;chr14:58797974..58798011,+!p3@ARID4A!1.32!19.84!ARID4A;;chr5:178368186..178368238,+!p1@ZNF454!1.30!33.57!ZNF454;;chr10:64134120..64134183,+!p1@ZNF365!1.30!22.89!ZNF365;;chr17:38256822..38256851,-!p1@NR1D1!1.29!140.38!NR1D1;;chr15:60884706..60884743,-!p1@RORA!1.29!94.60!RORA;;chr7:14029312..14029325,-!p4@ETV1!1.29!22.89!ETV1;;chr7:14026022..14026044,-!p7@ETV1!1.29!18.31!ETV1;;chr7:14028693..14028704,-!p12@ETV1!1.29!18.31!ETV1;;chr2:180726331..180726344,-!p5@ZNF385B!1.29!18.31!ZNF385B;;chr3:141105235..141105307,+!p7@ZBTB38!1.29!18.31!ZBTB38;;chr11:31839488..31839515,-!p3@PAX6!1.29!18.31!PAX6;;chr1:61548374..61548415,+!p4@NFIA!1.28!33.57!NFIA;;chr21:47063625..47063658,+!p1@PCBP3!1.27!74.77!PCBP3;;chr19:38183208..38183225,-!p1@ZNF781!1.25!21.36!ZNF781;;chr14:33403881..33403924,+!p1@NPAS3!1.25!16.78!NPAS3;;chr7:64342863..64342905,+!p3@ZNF273!1.25!16.78!ZNF273;;chr8:93107696..93107716,-!p8@RUNX1T1!1.25!16.78!RUNX1T1;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.25!16.78!POU3F3;;chr2:180726040..180726052,-!p2@ZNF385B!1.25!16.78!ZNF385B;;chr3:181429741..181429767,+!p2@SOX2!1.25!16.78!SOX2;;chr4:57547454..57547469,-!p1@HOPX!1.25!16.78!HOPX;;chrX:136648643..136648711,+!p2@ZIC3!1.25!16.78!ZIC3;;chr1:61547894..61547968,+!p2@NFIA!1.24!47.30!NFIA;;chr5:92918894..92918912,+!p2@NR2F1!1.22!50.35!NR2F1;;chr14:21994337..21994442,-!p1@SALL2!1.22!42.72!SALL2;;chr2:185463247..185463263,+!p1@ZNF804A!1.22!27.46!ZNF804A;;chr10:48355030..48355090,+!p1@ZNF488!1.21!19.84!ZNF488;;chr11:125034586..125034604,+!p3@PKNOX2!1.21!15.26!PKNOX2;;chr13:100633726..100633749,+!p6@ZIC2!1.21!15.26!ZIC2;;chr8:106330972..106330979,+!p7@ZFPM2!1.21!15.26!ZFPM2;;chr15:61521462..61521482,-!p4@RORA!1.21!15.26!RORA;;chr2:180726058..180726098,-!p3@ZNF385B!1.21!15.26!ZNF385B;;chr3:141103634..141103665,+!p18@ZBTB38!1.21!15.26!ZBTB38;;chr1:2235077..2235103,+!p9@SKI!1.21!15.26!SKI;;chr20:20348740..20348757,+!p1@INSM1!1.21!15.26!INSM1;;chr7:28448965..28448994,+!p2@CREB5!1.20!51.88!CREB5;;chr9:3525910..3525955,-!p4@RFX3!1.20!44.25!RFX3;;chr1:61548118..61548129,+!p9@NFIA!1.20!16.78!NFIA;;chr20:3388541..3388575,-!p2@C20orf194!1.19!56.46!C20orf194;;chr2:157198916..157198978,-!p2@NR4A2!1.19!50.35!NR4A2;;chr11:61520075..61520136,+!p1@C11orf9!1.19!30.52!C11orf9;;chr3:42947600..42947680,+!p1@ZNF662!1.17!19.84!ZNF662;;chr22:38380543..38380569,-!p1@SOX10!1.17!13.73!SOX10;;chr3:147110055..147110129,-!p1@ZIC4!1.17!13.73!ZIC4;;chr3:27763807..27763822,-!p1@EOMES!1.17!13.73!EOMES;;chr9:135457981..135458003,+!p1@BARHL1!1.17!13.73!BARHL1;;chr7:14025135..14025147,-!p42@ETV1!1.17!13.73!ETV1;;chr8:106330543..106330554,+!p4@ZFPM2!1.17!13.73!ZFPM2;;chr8:106330848..106330859,+!p5@ZFPM2!1.17!13.73!ZFPM2;;chr8:53322304..53322340,-!p1@ST18!1.17!13.73!ST18;;chr21:34398234..34398250,+!p1@OLIG2!1.17!13.73!OLIG2;;chr16:67198633..67198671,+!p1@HSF4!1.17!13.73!HSF4;;chr18:56532079..56532095,+!p8@ZNF532!1.17!13.73!ZNF532;;chr17:70117153..70117174,+!p1@SOX9!1.15!132.75!SOX9;;chr1:61548225..61548299,+!p1@NFIA!1.14!166.31!NFIA;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!1.14!27.46!ZNF395;;chr19:53496768..53496799,-!p1@ZNF702P!1.14!19.84!ZNF702P;;chr19:37096139..37096170,-!p2@ZNF529!1.13!35.09!ZNF529;;chr18:47814186..47814232,-!p2@CXXC1!1.13!25.94!CXXC1;;chr17:38465413..38465438,+!p5@RARA!1.13!19.84!RARA;;chr5:178322893..178322931,+!p1@ZFP2!1.13!18.31!ZFP2;;chr5:158526459..158526481,-!p2@EBF1!1.13!16.78!EBF1;;chr18:14132422..14132440,-!p1@ZNF519!1.13!16.78!ZNF519;;chr19:21512202..21512225,-!p1@ZNF708!1.12!62.56!ZNF708;;chr19:57183114..57183145,-!p1@ZNF835!1.12!13.73!ZNF835;;chr19:58545369..58545404,+!p2@ZSCAN1!1.12!12.21!ZSCAN1;;chr1:42384532..42384603,-!p2@HIVEP3!1.12!12.21!HIVEP3;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.12!12.21!ZBED1;;chr11:125034605..125034636,+!p2@PKNOX2!1.12!12.21!PKNOX2;;chr14:33403648..33403710,+!p3@NPAS3!1.12!12.21!NPAS3;;chr22:21771656..21771662,+!p1@HIC2!1.12!12.21!HIC2;;chr22:41763452..41763466,+!p2@TEF!1.12!12.21!TEF;;chr2:180726254..180726275,-!p4@ZNF385B!1.12!12.21!ZNF385B;;chr3:147121835..147121852,-!p9@ZIC4!1.12!12.21!ZIC4;;chr3:21792682..21792720,-!p1@ZNF385D!1.12!12.21!ZNF385D;;chr7:14026123..14026135,-!p30@ETV1!1.12!12.21!ETV1;;chr8:93074848..93074871,-!p3@RUNX1T1!1.12!12.21!RUNX1T1;;chr17:40897043..40897087,-!p1@EZH1!1.11!106.81!EZH1;;chr9:14314131..14314147,-!p2@NFIB!1.11!65.61!NFIB;;chr19:37096194..37096235,+!p1@ZNF382!1.11!38.15!ZNF382;;chr19:13136130..13136165,+!p6@NFIX!1.10!15.26!NFIX;;chr2:113057415..113057477,+!p3@ZC3H6!1.10!15.26!ZC3H6;;chr15:41913690..41913753,+!p2@MGA!1.09!27.46!MGA;;chr7:86781858..86781879,+!p3@DMTF1!1.09!18.31!DMTF1;;chr7:64254793..64254813,+!p1@ZNF138!1.08!126.64!ZNF138;;chr2:113033164..113033219,+!p1@ZC3H6!1.08!93.07!ZC3H6;;chr6:10412600..10412637,-!p1@TFAP2A!1.08!18.31!TFAP2A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KR1!0.54!35.09!HKR1;;chr16:68573182..68573228,+!p1@ZFP90!0.54!30.52!ZFP90;;chr3:113415441..113415500,-!p1@KIAA2018!0.54!16.78!KIAA2018;;chr19:38146320..38146401,-!p1@ZFP30!0.54!16.78!ZFP30;;chr16:30546141..30546240,-!p1@ZNF747,p2@ZNF768!0.54!12.21!ZNF747;;chr17:7382856..7382889,-!p3@ZBTB4!0.54!12.21!ZBTB4;;chrX:47509994..47510008,-!p2@ELK1!0.54!12.21!ELK1;;chr1:211433275..211433335,+!p2@RCOR3!0.54!9.15!RCOR3;;chr7:74072135..74072171,+!p2@GTF2I!0.54!9.15!GTF2I;;chr9:2015306..2015323,+!p3@SMARCA2!0.54!7.63!SMARCA2;;chr16:30597000..30597068,-!p1@ZNF785!0.54!7.63!ZNF785;;chr1:211433151..211433191,+!p5@RCOR3!0.54!6.10!RCOR3;;chr1:151032922..151032951,+!p2@MLLT11!0.54!4.58!MLLT11;;chr14:89029308..89029318,+!p3@ZC3H14!0.54!4.58!ZC3H14;;chr19:22817119..22817145,+!p1@ZNF492!0.54!4.58!ZNF492;;chr15:77197753..77197772,-!p2@SCAPER!0.54!3.05!SCAPER;;chr18:53255839..53255854,-!p13@TCF4!0.54!3.05!TCF4;;chr5:92919068..92919082,+!p5@NR2F1!0.54!3.05!NR2F1;;chr7:106826626..106826630,+!p3@HBP1!0.54!3.05!HBP1;;chr7:28725715..28725727,+!p3@CREB5!0.54!3.05!CREB5;;chr7:4721998..4722013,+!p3@FOXK1!0.54!3.05!FOXK1;;chr7:77428282..77428293,+!p4@PHTF2!0.54!3.05!PHTF2;;chr11:10876220..10876224,-!p3@ZBED5!0.54!3.05!ZBED5;;chr14:33408072..33408114,+!p2@NPAS3!0.54!3.05!NPAS3;;chr4:26321435..26321454,+!p12@RBPJ!0.54!3.05!RBPJ;;chr16:69599861..69599885,+!p1@NFAT5!0.53!50.35!NFAT5;;chr3:101395963..101395993,-!p1@ZBTB11!0.53!45.77!ZBTB11;;chr12:498415..498492,-!p1@KDM5A!0.53!33.57!KDM5A;;chr14:90085458..90085557,-!p1@FOXN3!0.53!32.04!FOXN3;;chr2:70142189..70142223,+!p2@MXD1!0.53!21.36!MXD1;;chr19:35225121..35225175,+!p1@ZNF181!0.53!16.78!ZNF181;;chr6:28317685..28317761,+!p1@ZKSCAN3!0.53!15.26!ZKSCAN3;;chr19:53289995..53290050,-!p1@ZNF600!0.53!12.21!ZNF600;;chr3:150126136..150126158,+!p4@TSC22D2!0.53!10.68!TSC22D2;;chr19:52391147..52391218,-!p1@ZNF577!0.53!9.15!ZNF577;;chr19:52674853..52674892,-!p2@ZNF836!0.53!7.63!ZNF836;;chr1:8877735..8877760,-!p8@RERE!0.53!7.63!RERE;;chr5:178450797..178450814,+!p1@ZNF879!0.53!7.63!ZNF879;;chr6:41040923..41040952,+!p2@NFYA!0.53!7.63!NFYA;;chr7:99647411..99647433,+!p2@ZSCAN21!0.53!7.63!ZSCAN21;;chrX:101975643..101975683,+!p1@BHLHB9!0.53!6.10!BHLHB9;;chr13:45151403..45151433,-!p5@TSC22D1!0.53!6.10!TSC22D1;;chr19:52674898..52674931,-!p3@ZNF836!0.53!6.10!ZNF836;;chr3:23986748..23986761,+!p3@NR1D2!0.53!6.10!NR1D2;;chr3:114866124..114866149,-!p5@ZBTB20!0.53!4.58!ZBTB20;;chr9:20621927..20621996,-!p3@MLLT3!0.53!4.58!MLLT3;;chr19:12476469..12476509,-!p2@ZNF442!0.53!4.58!ZNF442;;chr19:12662314..12662328,-!p2@ZNF564!0.53!4.58!ZNF564;;chr15:37392576..37392589,-!p12@MEIS2!0.53!3.05!MEIS2;;chr19:36980474..36980485,-!p4@ZNF566!0.53!3.05!ZNF566;;chr2:148778934..148778965,+!p6@MBD5!0.53!3.05!MBD5;;chr7:21467150..21467172,+!p5@SP4!0.53!3.05!SP4;;chr8:28747944..28747955,+!p5@HMBOX1!0.53!3.05!HMBOX1;;chr1:78445148..78445170,-!p6@FUBP1!0.53!3.05!FUBP1;;chr19:53606636..53606692,-!p1@ZNF160!0.52!54.93!ZNF160;;chr3:169491171..169491205,+!p1@MYNN!0.52!51.88!MYNN;;chr6:168227552..168227609,+!p1@MLLT4!0.52!24.41!MLLT4;;chr7:64838786..64838809,+!p2@ZNF92!0.52!16.78!ZNF92;;chr19:37701396..37701453,-!p1@ZNF585B!0.52!16.78!ZNF585B;;chr2:157189180..157189290,-!p1@NR4A2!0.52!15.26!NR4A2;;chr19:40596828..40596855,-!p1@ZNF780A!0.52!12.21!ZNF780A;;chr17:5095126..5095169,-!p1@ZNF594!0.52!12.21!ZNF594;;chr19:53030906..53030952,+!p1@ZNF808!0.52!10.68!ZNF808;;chr20:47894936..47895010,-!p2@ZNFX1!0.52!9.15!ZNFX1;;chr6:12011943..12012015,+!p2@HIVEP1!0.52!9.15!HIVEP1;;chr19:8942962..8942987,-!p1@ZNF558!0.52!7.63!ZNF558;;chr11:45168182..45168214,+!p1@ENST00000399269!0.52!7.63!PRDM11;;chr3:125094150..125094176,-!p2@ZNF148!0.52!6.10!ZNF148;;chr19:12444440..12444455,-!p1@ZNF563!0.52!4.58!ZNF563;;chr19:37406934..37406949,-!p1@ZNF829!0.52!4.58!ZNF829;;chr15:37392094..37392116,-!p6@MEIS2!0.52!3.05!MEIS2;;chr19:14117148..14117157,-!p2@RFX1!0.52!3.05!RFX1;;chr19:2819943..2819977,+!p2@ZNF554!0.52!3.05!ZNF554;;chr9:2016758..2016782,+!p11@SMARCA2!0.52!3.05!SMARCA2;;chr9:2017365..2017380,+!p9@SMARCA2!0.52!3.05!SMARCA2;;chr8:81397820..81397836,+!p2@ZBTB10!0.52!3.05!ZBTB10;;chr2:61108689..61108694,+!p6@REL!0.52!3.05!REL;;chr1:151032739..151032748,+!p6@MLLT11!0.52!3.05!MLLT11;;chr13:46626847..46626899,-!p1@ZC3H13!0.51!91.55!ZC3H13;;chr2:48541789..48541874,+!p1@FOXN2!0.51!65.61!FOXN2;;
+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001895;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002028;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002037
+|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0006215,UBERON:0010316
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 36: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/cerebellum%2520-%2520adult%252c%2520donor10196.CNhs13799.10173-103C2.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/cerebellum%2520-%2520adult%252c%2520donor10196.CNhs13799.10173-103C2.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/cerebellum%2520-%2520adult%252c%2520donor10196.CNhs13799.10173-103C2.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/cerebellum%2520-%2520adult%252c%2520donor10196.CNhs13799.10173-103C2.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/cerebellum%2520-%2520adult%252c%2520donor10196.CNhs13799.10173-103C2.hg38.nobarcode.ctss.bed.gz
 |id=FF:10173-103C2
 |is_a=FF:0010083
 |is_obsolete=
+|library_id=CNhs13799
+|library_id_phase_based=2:CNhs13799
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10173
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10173
 |name=cerebellum - adult, donor10196
 |namespace=
@@ Line 46: / Line 63: @@
 |profile_rnaseq=
 |profile_srnaseq=
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@@ Line 59: / Line 79: @@
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@@ Line 80: / Line 101: @@
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10173-103C2;search_select_hide=table117:FF:10173-103C2
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FF:10173-103C2: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 12:25, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0