FF:10174-103C3: Difference between revisions

Latest revision as of 12:25, 3 June 2020

Name:	medulla oblongata - adult, donor10196
Species:	Human (Homo sapiens)
Library ID:	CNhs13800
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	medulla oblongata
dev stage	NA
sex	female
age	60
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	Peter Heutink
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005590

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13800		CAGE		DRX008686		DRR009558

Accession ID Hg19

Library id		BAM		CTSS
CNhs13800		DRZ000983		DRZ002368

Accession ID Hg38

Library id		BAM		CTSS
CNhs13800		DRZ012333		DRZ013718

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	9.491671e-4
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.883
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.342
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	1.117
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0.197
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.197
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	1.186
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0.647
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.197
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.118
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.701
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.197
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.0137
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.152
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.679
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.197
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0.332
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.79
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.0646
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0.647
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0.197
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0.332
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.332
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0.587
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.629
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.518
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.747
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0.383
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.197
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0.197
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0.197
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0.518
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0.197
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13800

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0156
MA0003.1	MA0003.1	0.229
MA0004.1	MA0004.1	0.159
MA0006.1	MA0006.1	0.623
MA0007.1	MA0007.1	0.681
MA0009.1	MA0009.1	0.203
MA0014.1	MA0014.1	0.787
MA0017.1	MA0017.1	0.0437
MA0018.2	MA0018.2	0.0509
MA0019.1	MA0019.1	0.649
MA0024.1	MA0024.1	0.981
MA0025.1	MA0025.1	0.894
MA0027.1	MA0027.1	0.149
MA0028.1	MA0028.1	0.0301
MA0029.1	MA0029.1	0.0975
MA0030.1	MA0030.1	0.177
MA0031.1	MA0031.1	0.568
MA0035.2	MA0035.2	0.0164
MA0038.1	MA0038.1	0.191
MA0039.2	MA0039.2	0.419
MA0040.1	MA0040.1	0.71
MA0041.1	MA0041.1	0.723
MA0042.1	MA0042.1	0.706
MA0043.1	MA0043.1	0.999
MA0046.1	MA0046.1	0.0928
MA0047.2	MA0047.2	0.202
MA0048.1	MA0048.1	0.0991
MA0050.1	MA0050.1	0.0284
MA0051.1	MA0051.1	0.141
MA0052.1	MA0052.1	0.643
MA0055.1	MA0055.1	0.00246
MA0057.1	MA0057.1	0.992
MA0058.1	MA0058.1	0.165
MA0059.1	MA0059.1	0.0462
MA0060.1	MA0060.1	0.613
MA0061.1	MA0061.1	0.00221
MA0062.2	MA0062.2	8.31146e-5
MA0065.2	MA0065.2	0.00322
MA0066.1	MA0066.1	0.0402
MA0067.1	MA0067.1	0.623
MA0068.1	MA0068.1	0.928
MA0069.1	MA0069.1	0.666
MA0070.1	MA0070.1	0.798
MA0071.1	MA0071.1	0.0864
MA0072.1	MA0072.1	0.849
MA0073.1	MA0073.1	0.507
MA0074.1	MA0074.1	0.218
MA0076.1	MA0076.1	0.0561
MA0077.1	MA0077.1	0.0341
MA0078.1	MA0078.1	0.955
MA0079.2	MA0079.2	0.998
MA0080.2	MA0080.2	1.92145e-8
MA0081.1	MA0081.1	0.0147
MA0083.1	MA0083.1	0.079
MA0084.1	MA0084.1	0.192
MA0087.1	MA0087.1	0.0682
MA0088.1	MA0088.1	0.145
MA0090.1	MA0090.1	0.886
MA0091.1	MA0091.1	0.221
MA0092.1	MA0092.1	0.26
MA0093.1	MA0093.1	0.212
MA0099.2	MA0099.2	3.08268e-18
MA0100.1	MA0100.1	0.551
MA0101.1	MA0101.1	0.00107
MA0102.2	MA0102.2	0.411
MA0103.1	MA0103.1	0.0905
MA0104.2	MA0104.2	0.228
MA0105.1	MA0105.1	4.24989e-5
MA0106.1	MA0106.1	0.0127
MA0107.1	MA0107.1	9.84754e-4
MA0108.2	MA0108.2	0.0864
MA0111.1	MA0111.1	0.785
MA0112.2	MA0112.2	0.00158
MA0113.1	MA0113.1	0.835
MA0114.1	MA0114.1	0.0314
MA0115.1	MA0115.1	0.973
MA0116.1	MA0116.1	0.00296
MA0117.1	MA0117.1	0.714
MA0119.1	MA0119.1	0.221
MA0122.1	MA0122.1	0.232
MA0124.1	MA0124.1	0.766
MA0125.1	MA0125.1	0.0565
MA0131.1	MA0131.1	0.886
MA0135.1	MA0135.1	0.00252
MA0136.1	MA0136.1	1.31597e-11
MA0137.2	MA0137.2	0.00262
MA0138.2	MA0138.2	0.272
MA0139.1	MA0139.1	0.592
MA0140.1	MA0140.1	0.0208
MA0141.1	MA0141.1	0.0496
MA0142.1	MA0142.1	0.221
MA0143.1	MA0143.1	0.0165
MA0144.1	MA0144.1	0.643
MA0145.1	MA0145.1	0.369
MA0146.1	MA0146.1	0.0144
MA0147.1	MA0147.1	0.108
MA0148.1	MA0148.1	0.233
MA0149.1	MA0149.1	0.0267
MA0150.1	MA0150.1	1.18537e-4
MA0152.1	MA0152.1	0.215
MA0153.1	MA0153.1	0.728
MA0154.1	MA0154.1	0.0264
MA0155.1	MA0155.1	0.624
MA0156.1	MA0156.1	1.2805e-8
MA0157.1	MA0157.1	0.943
MA0159.1	MA0159.1	0.036
MA0160.1	MA0160.1	0.166
MA0162.1	MA0162.1	0.184
MA0163.1	MA0163.1	1.14012e-8
MA0164.1	MA0164.1	0.412
MA0258.1	MA0258.1	0.0258
MA0259.1	MA0259.1	0.486

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13800

Novel motif	Logo	P-value
1	1	0.0542
10	10	0.0408
100	100	0.485
101	101	0.358
102	102	0.904
103	103	0.0156
104	104	0.0426
105	105	0.422
106	106	0.0441
107	107	0.256
108	108	0.853
109	109	0.00528
11	11	0.00917
110	110	0.0507
111	111	0.106
112	112	0.703
113	113	0.123
114	114	0.0927
115	115	0.709
116	116	0.114
117	117	0.00614
118	118	0.143
119	119	0.209
12	12	0.555
120	120	0.118
121	121	0.728
122	122	0.776
123	123	0.706
124	124	0.215
125	125	0.602
126	126	0.262
127	127	0.418
128	128	0.45
129	129	0.784
13	13	0.00769
130	130	0.143
131	131	0.0977
132	132	0.319
133	133	0.0572
134	134	0.742
135	135	0.0913
136	136	0.0137
137	137	0.72
138	138	0.457
139	139	0.0967
14	14	0.96
140	140	0.981
141	141	0.67
142	142	0.801
143	143	0.00973
144	144	0.666
145	145	0.369
146	146	0.464
147	147	0.805
148	148	0.719
149	149	0.106
15	15	0.065
150	150	0.126
151	151	0.647
152	152	0.127
153	153	0.723
154	154	0.5
155	155	0.383
156	156	0.281
157	157	0.352
158	158	0.297
159	159	0.0189
16	16	0.0581
160	160	0.126
161	161	0.125
162	162	0.781
163	163	0.721
164	164	0.00633
165	165	0.205
166	166	0.385
167	167	0.902
168	168	0.467
169	169	0.0169
17	17	0.0562
18	18	0.0211
19	19	0.416
2	2	0.877
20	20	0.23
21	21	0.0274
22	22	0.276
23	23	0.676
24	24	0.0837
25	25	0.593
26	26	9.29189e-4
27	27	0.663
28	28	0.954
29	29	0.00596
3	3	0.0294
30	30	0.604
31	31	0.647
32	32	0.00942
33	33	0.114
34	34	0.653
35	35	0.323
36	36	0.248
37	37	0.0351
38	38	0.412
39	39	0.615
4	4	0.673
40	40	0.11
41	41	0.272
42	42	0.208
43	43	0.0961
44	44	0.183
45	45	0.768
46	46	0.0218
47	47	0.0408
48	48	0.0266
49	49	0.208
5	5	0.866
50	50	0.4
51	51	0.197
52	52	0.917
53	53	0.644
54	54	0.377
55	55	0.985
56	56	0.629
57	57	0.322
58	58	0.487
59	59	0.0515
6	6	0.987
60	60	0.206
61	61	0.0697
62	62	0.209
63	63	0.226
64	64	0.142
65	65	0.232
66	66	0.0774
67	67	0.29
68	68	0.515
69	69	0.398
7	7	0.179
70	70	0.0261
71	71	0.00739
72	72	0.391
73	73	0.0491
74	74	0.803
75	75	0.00763
76	76	0.171
77	77	0.276
78	78	3.52932e-4
79	79	0.44
8	8	0.0804
80	80	0.573
81	81	0.435
82	82	0.882
83	83	0.0267
84	84	0.391
85	85	0.615
86	86	0.108
87	87	4.00928e-4
88	88	0.56
89	89	0.097
9	9	0.661
90	90	0.146
91	91	0.551
92	92	0.814
93	93	0.683
94	94	0.0874
95	95	0.0257
96	96	0.993
97	97	0.851
98	98	0.196
99	99	0.659

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13800

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010038 human medulla oblongata - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0001896 (medulla oblongata)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0004733 (segmental subdivision of hindbrain)
0004732 (segmental subdivision of nervous system)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0002298 (brainstem)
0002028 (hindbrain)
0005290 (myelencephalon)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010038 (human medulla oblongata - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
 |DRA_sample_Accession=CAGE@SAMD00005590
-|accession_numbers=CAGE;DRX008686;DRR009558;DRZ000983;DRZ002368
+|accession_numbers=CAGE;DRX008686;DRR009558;DRZ000983;DRZ002368;DRZ012333;DRZ013718
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001896,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0004733,UBERON:0004732,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0002298,UBERON:0002028,UBERON:0005290
 |ancestors_in_cell_lineage_facet=
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr21:34442439..34442455,+!p1@OLIG1!2.51!321.68!OLIG1;;chr7:100065686..100065701,-!p2@TSC22D4!2.47!293.59!TSC22D4;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.14!138.19!PEG3;;chr12:106976774..106976788,+!p1@RFX4!1.98!93.47!RFX4;;chr11:61520075..61520136,+!p1@C11orf9!1.83!137.62!C11orf9;;chr14:57277178..57277203,-!p1@OTX2!1.83!66.52!OTX2;;chr10:48355030..48355090,+!p1@ZNF488!1.79!77.98!ZNF488;;chr3:181429704..181429722,+!p1@SOX2!1.79!61.35!SOX2;;chr12:106976678..106976708,+!p2@RFX4!1.79!60.78!RFX4;;chr22:38380543..38380569,-!p1@SOX10!1.79!60.21!SOX10;;chr8:53322304..53322340,-!p1@ST18!1.78!59.63!ST18;;chr9:114287433..114287513,+!p1@ZNF483!1.71!126.15!ZNF483;;chr21:34442540..34442560,+!p2@OLIG1!1.63!41.29!OLIG1;;chr12:103351444..103351461,+!p1@ASCL1!1.61!40.14!ASCL1;;chr21:34398234..34398250,+!p1@OLIG2!1.60!38.99!OLIG2;;chr2:145277882..145277967,-!p3@ZEB2!1.58!63.08!ZEB2;;chr3:147127177..147127194,+!p2@ZIC1!1.58!37.27!ZIC1;;chr4:57547454..57547469,-!p1@HOPX!1.58!36.70!HOPX;;chr17:74137321..74137337,-!p1@FOXJ1!1.56!35.55!FOXJ1;;chr12:26277817..26277863,-!p2@BHLHE41!1.51!41.86!BHLHE41;;chr16:1031762..1031781,+!p1@SOX8!1.51!31.54!SOX8;;chr4:81118647..81118666,+!p1@PRDM8!1.48!37.85!PRDM8;;chr10:134599649..134599653,-!p1@NKX6-2!1.46!28.10!NKX6-2;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.44!26.38!POU3F3;;chr3:147127142..147127168,+!p1@ZIC1!1.44!26.38!ZIC1;;chr3:181429741..181429767,+!p2@SOX2!1.43!25.80!SOX2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.43!25.80!ZBED1;;chr11:31832658..31832681,-!p1@PAX6!1.42!25.23!PAX6;;chr2:122042770..122042785,-!p1@TFCP2L1!1.42!25.23!TFCP2L1;;chr15:42749722..42749739,-!p2@ZFP106!1.40!42.43!ZFP106;;chr8:53322347..53322378,-!p2@ST18!1.40!24.08!ST18;;chr11:113930425..113930471,+!p1@ZBTB16!1.38!32.68!ZBTB16;;chr12:26277956..26277980,-!p1@BHLHE41!1.37!78.56!BHLHE41;;chr19:46801639..46801699,+!p1@HIF3A!1.37!22.36!HIF3A;;chr15:80696703..80696754,+!p1@ARNT2!1.36!29.24!ARNT2;;chr14:33403881..33403924,+!p1@NPAS3!1.36!21.79!NPAS3;;chr1:214161272..214161322,+!p1@PROX1!1.35!29.82!PROX1;;chr19:30863271..30863338,+!p1@ZNF536!1.34!20.64!ZNF536;;chr1:61548069..61548102,+!p3@NFIA!1.32!47.59!NFIA;;chr14:33408072..33408114,+!p2@NPAS3!1.32!23.51!NPAS3;;chr7:63505799..63505904,+!p1@ZNF727!1.32!20.07!ZNF727;;chr14:57277098..57277116,-!p3@OTX2!1.30!18.92!OTX2;;chr11:8102846..8102892,+!p1@TUB!1.29!25.80!TUB;;chr11:125034640..125034655,+!p1@PKNOX2!1.29!18.35!PKNOX2;;chr9:77112244..77112262,+!p1@RORB!1.25!18.92!RORB;;chr3:147111505..147111529,+!p6@ZIC1!1.25!16.63!ZIC1;;chr17:53342311..53342400,+!p1@HLF!1.24!18.92!HLF;;chr3:126076242..126076257,-!p1@KLF15!1.23!20.07!KLF15;;chr3:187463179..187463201,-!p2@BCL6!1.22!64.22!BCL6;;chr20:62680984..62680999,-!p1@SOX18!1.20!19.50!SOX18;;chr13:100634031..100634045,+!p1@ZIC2!1.20!14.91!ZIC2;;chr6:126070769..126070801,+!p1@HEY2!1.19!16.63!HEY2;;chr6:19837592..19837621,+!p1@ID4!1.18!85.44!ID4;;chr12:26277929..26277955,-!p3@BHLHE41!1.17!19.50!BHLHE41;;chr2:166326200..166326216,+!p1@CSRNP3!1.16!19.50!CSRNP3;;chr19:57352109..57352153,-!p2@ZIM2!1.15!13.19!ZIM2;;chr9:4300050..4300118,-!p1@GLIS3!1.14!82.57!GLIS3;;chr10:35484053..35484076,+!p1@CREM!1.14!32.11!CREM;;chr12:54779511..54779577,-!p5@ZNF385A!1.13!12.62!ZNF385A;;chr17:70117153..70117174,+!p1@SOX9!1.12!124.43!SOX9;;chr3:147111231..147111281,+!p3@ZIC1!1.12!12.04!ZIC1;;chr4:26344778..26344807,+!p8@RBPJ!1.12!12.04!RBPJ;;chr3:114343768..114343822,-!p1@ZBTB20!1.11!51.61!ZBTB20;;chr21:39870339..39870443,-!p1@ERG!1.10!11.47!ERG;;chr12:106976656..106976672,+!p4@RFX4!1.10!11.47!RFX4;;chr14:33403648..33403710,+!p3@NPAS3!1.10!11.47!NPAS3;;chr13:72441315..72441454,-!p1@DACH1!1.09!22.94!DACH1;;chr1:61548374..61548415,+!p4@NFIA!1.08!20.64!NFIA;;chr11:47400078..47400106,-!p1@SPI1!1.08!10.89!SPI1;;chr12:103352277..103352324,+!p2@ASCL1!1.08!10.89!ASCL1;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.08!10.89!SMARCE1;;chr8:40755333..40755352,-!p1@ZMAT4!1.08!10.89!ZMAT4;;chr18:77155922..77155939,+!p1@NFATC1!1.07!29.82!NFATC1;;chr19:21512202..21512225,-!p1@ZNF708!1.06!54.47!ZNF708;;chr1:61548225..61548299,+!p1@NFIA!1.05!134.75!NFIA;;chr20:21494654..21494678,-!p2@NKX2-2!1.05!10.32!NKX2-2;;chr15:61521495..61521506,-!p5@RORA!1.05!10.32!RORA;;chr19:13135386..13135435,+!p4@NFIX!1.05!10.32!NFIX;;chr11:31832862..31832884,-!p2@PAX6!1.05!10.32!PAX6;;chr11:31839488..31839515,-!p3@PAX6!1.05!10.32!PAX6;;chr2:95963052..95963106,+!p1@KCNIP3!1.05!10.32!KCNIP3;;chr9:2159850..2159880,+!p14@SMARCA2!1.05!10.32!SMARCA2;;chr19:38085768..38085821,+!p1@ZNF540!1.04!14.91!ZNF540;;chr19:58545369..58545404,+!p2@ZSCAN1!1.03!9.75!ZSCAN1;;chr19:6110458..6110472,-!p3@RFX2!1.03!9.75!RFX2;;chr3:147111198..147111225,+!p4@ZIC1!1.03!9.75!ZIC1;;chr15:57511609..57511651,+!p2@TCF12!1.02!16.06!TCF12;;chr9:3525848..3525863,-!p6@RFX3!1.01!9.17!RFX3;;chr10:48359344..48359376,+!p2@ZNF488!1.01!9.17!ZNF488;;chr7:50344289..50344323,+!p1@IKZF1!1.01!9.17!IKZF1;;chr12:54785074..54785122,-!p2@ZNF385A!0.99!13.76!ZNF385A;;chr19:9879350..98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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000955;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001896;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002028;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002298
 |ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316
 |fonse_cell_line=
@@ Line 41: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/medulla%2520oblongata%2520-%2520adult%252c%2520donor10196.CNhs13800.10174-103C3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/medulla%2520oblongata%2520-%2520adult%252c%2520donor10196.CNhs13800.10174-103C3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/medulla%2520oblongata%2520-%2520adult%252c%2520donor10196.CNhs13800.10174-103C3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/medulla%2520oblongata%2520-%2520adult%252c%2520donor10196.CNhs13800.10174-103C3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/medulla%2520oblongata%2520-%2520adult%252c%2520donor10196.CNhs13800.10174-103C3.hg38.nobarcode.ctss.bed.gz
 |id=FF:10174-103C3
 |is_a=EFO:0002091;;FF:0010038
 |is_obsolete=
 |library_id=CNhs13800
-|library_id_phase_based=1:CNhs13800
+|library_id_phase_based=2:CNhs13800
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10174
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10174
 |name=medulla oblongata - adult, donor10196
 |namespace=FANTOM5
@@ Line 53: / Line 63: @@
 |profile_rnaseq=
 |profile_srnaseq=
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10174-103C3;search_select_hide=table117:FF:10174-103C3
 }}

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FF:10174-103C3: Difference between revisions

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Latest revision as of 12:25, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0