FF:10174-103C3: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| (24 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005590 | ||
|accession_numbers=CAGE;DRX008686;DRR009558;DRZ000983;DRZ002368;DRZ012333;DRZ013718 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000955,UBERON:0001896,UBERON:0000479,UBERON:0004121,UBERON:0000064,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000481,UBERON:0000073,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002616,UBERON:0004733,UBERON:0004732,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0002298,UBERON:0002028,UBERON:0005290 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010038 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/medulla%2520oblongata%2520-%2520adult%252c%2520donor10196.CNhs13800.10174-103C3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/medulla%2520oblongata%2520-%2520adult%252c%2520donor10196.CNhs13800.10174-103C3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/medulla%2520oblongata%2520-%2520adult%252c%2520donor10196.CNhs13800.10174-103C3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/medulla%2520oblongata%2520-%2520adult%252c%2520donor10196.CNhs13800.10174-103C3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/medulla%2520oblongata%2520-%2520adult%252c%2520donor10196.CNhs13800.10174-103C3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10174-103C3 | |id=FF:10174-103C3 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0010038 | ||
|is_obsolete= | |||
|library_id=CNhs13800 | |||
|library_id_phase_based=2:CNhs13800 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10174 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10174 | |||
|name=medulla oblongata - adult, donor10196 | |name=medulla oblongata - adult, donor10196 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 44: | Line 63: | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq= | |profile_srnaseq= | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0.098420842023517,0,0,0.0365236539606481,0.434605240679025,0.0544331749546944,0.374655447525078,0,0,0,0,0,0,0,0,0,0.331795307148208,0,0,0,-0.153323010348428,0,0.098420842023517,0,0.394814422883727,0,0.233837410880151,0,0,0.794122068850244,0,0,0,0,0,0,0,0,0,0,0,0,-0.0160719027107481,0.25177683887957,0,0,0,0,0,0,0,0.0742058209106825,0.138519198013342,0.0486014816803529,0,0.587379335783582,0,0.097147487842584,0.331795307148208,0.490386974540977,0,0,0.42033207692833,0,0,0,0,0,0,0,0,0.196841684047034,0,0,0,0,0.434605240679025,0,0,0.0185018167633549,0,0,0,0,0,0,0.140946180852928,0.213790883377759,0.472020809982767,0,0.161862009767426,-0.0431473361229361,0.397726740209988,0.165897653574104,0,0,0,0.0988063328093277,0.354758064106349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120929026417051,0,0,0,0,-0.24878944489245,0.196841684047034,0,0.160110563208803,0.242298133534408,0,0 | |||
|repeat_enrich_byname=0,0,0,0,0.0988063328093277,0.434605240679025,0,0,0,0,0.196841684047034,0.7471999359185,0,0,0,0,-0.0503371912385303,0.098420842023517,0.173341271516993,0.0533265415235623,0.098420842023517,0,0.369236875711905,0,0.331795307148208,0.196841684047034,0.31572346236303,0.700172581670286,0.331795307148208,0,0.331795307148208,0.331795307148208,-0.128119866952565,0,0.38419268908971,0.357258694094231,0,0.00417652014986572,0,0.147272372490253,0.522806811670722,0,0.303531189427839,0.579083229191633,0,0.196841684047034,0,0.234592416946459,0.112959604579292,0.162704529359669,0.210915823354468,0.564707321945584,1.42375846291436,-0.0321476020849869,0.378892743897843,0,0,0,0.651389609247381,0.0969517329417342,0,0,0.573312019164988,0.409552969738104,0,0,0.591278127504196,0.331795307148208,-0.0730930410485979,-0.248868050382253,0,0.117968087682362,0,0,0,0,0,0.331795307148208,0,0.196841684047034,0.587379335783582,0,0,0.391013666037224,-0.130146912631935,0,0,0,0,0.0309542007281041,0,0.0697792341519124,-0.373286155956567,-0.269631976484861,0.186286948084543,0.107130712404787,0.0560949254365572,0.59418666007349,0.22885898410889,0.0728854749329559,-0.0884444629692447,0.0494398346758956,0.244623521129178,0.130362864284191,0.0913345318761192,0.267626183169907,0.21182389210274,-0.080764766561821,0.126838147885172,0.126327230702111,0.183421229107735,0,0.196841684047034,0.196841684047034,0.266182105814158,0.0792445693016646,0.0993201095692988,0.257085221441727,0.584688548826598,0.588283823112698,0.237857924711242,0.0288089575514395,-0.333503385977975,1.46914397987745,0.129942882886987,0.081949904369336,0.108732963384556,0.196841684047034,0.196841684047034,0.176293149413136,0.172218114389173,-0.0857395254370364,-0.181220932499654,0.0365499792319772,-0.287135777763946,0.449331443064059,0.373450921489711,0.253631482211013,0.0157079179398518,0.331795307148208,0.196841684047034,-0.144171990192387,0.196841684047034,0,0,0.309996226038493,0.517675704141427,0.0328418253330576,0.535864078071358,0.284820142585882,0.190740751126223,0.228802722751252,0,-0.0384482282818731,0.196841684047034,-0.0967447374796259,0.129624545537403,0.219601551780134,0.187745673520991,0.112322425845164,-0.023423371916851,0.167107023581364,-0.114112641269618,0.0952808987496894,1.36035154011307,0.133296958753746,-0.00820807008003976,-0.365473508480857,-0.201560529006644,0.235620321203704,0.499252503308294,0.184403093731651,-0.183372168848094,0.632169129969167,0.0324211939780048,0.154323362189494,0,0.189578904188034,1.24622439326306,0.128388954715031,0,-0.292586794883288,0.20676618444526,0.48778928404842,0.266426427091868,0.0584941574031628,0.230766543009468,0.558537670483226,0,0.0605035091982131,0.125389826055055,0.196841684047034,0.367308620806788,0.454237809140596,0.479071870470863,0.475094331870116,0.092370288547354,-0.202700822606074,0.789628845767455,0.647427490269002,0.089174608637578,0.0963192693838197,0.331795307148208,0.143948125070191,-0.174597673534371,0.142983894723205,0.0808706106121001,0.331795307148208,0,0.250876049090678,0.227414518099997,0.517675704141427,0.0942445178522556,0.473937368057065,0.243985568570844,0.264349362654671,0.098420842023517,0.742732181604846,0.123462351516538,0,0.154267541183033,0.331795307148208,0.191419796328173,0,0,0.172253290559194,0,0,0.431884446264739,1.4091990257443,-0.0249080465259537,0,0,0,0,0,0,0,0.448346557070568,-0.354833330216448,0.196841684047034,-0.247635344600655,0,0,0,0.331795307148208,0,0.0429276924884027,0,0,-0.538432026535757,0,-0.12301741567642,0,0.264318495597621,0,0,-0.0188817185064405,0.231368678584301,0.196841684047034,-0.131862706497632,0,0,0,0.434605240679025,0.110700694257823,0,0,0,0.264318495597621,0.13911122699337,0.305195250112179,0,0,0.098420842023517,0.512674444165665,0.517675704141427,0,0,0.0989736495060435,-0.284376768903981,0,0.00305172856879388,0.197307752567014,0.113198505537954,-0.0138639875232756,0.505797456236741,0.13714881909298,-0.0208240795040815,-1.12744332903967,-0.194289694313839,0,0,0.0704481753583209,0,0.0640371267195625,-0.0536216125774165,0.117266135164102,0.196841684047034,0,0,0,0,0,0.331795307148208,0,0.117480794748453,0.0439671246843897,0,0,0,0,0,0,0,0,0,0,0.289906570840866,-0.0922240566585104,0.196841684047034,0,0.196841684047034,0.196841684047034,0,0.098420842023517,0.196841684047034,0.141791630495201,0.241243285687108,0,0,0,0,0,0.196841684047034,0.242298133534408,0,0.228746642007044,0,0,0.196841684047034,0,0,0.490386974540977,0,0,0,0,0.417515587901947,0,0,0.0544331749546944,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.123319086035448,0.0361440284341163,0,0.196841684047034,0,0,0.196841684047034,0.434605240679025,0,0.553445744363038,0,0.331795307148208,0,0,1.69280431926884,0,0,0,0.41287931935227,0,0.0365236539606481,0,0,0.434605240679025,0.098420842023517,0,0.196841684047034,0,0,0,0,0.7471999359185,0,0,0,0,0,0,0,0.37359996795925,0,0.0737138178227583,-0.206515848329067,0.220333892122269,0.295311113071957,0.097135425804278,0,0,-0.0153257322935293,0,0,0,0,0,0,0.06708041799499,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.098420842023517,0.219497491073026,0,0,0,0,0,0,0,0.233837410880151,0,0,-0.0920328098005262,0,0,0,0,0,0.0520507747199467,0.188163631753516,0.151384840855877,0.120350869824381,0,0.0106675167875002,0,0.162917047857058,0.587379335783582,0.0687734263770643,0,0.331795307148208,-0.0667773874189013,0,0,0,0.0707398417811798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,0,0,0,0,0,0,0.098420842023517,0.098420842023517,0,0,0,0,0,0.098420842023517,0,0,0,0,0,0,0,0,0.196841684047034,0.722377181385267,0,0,0,0,0,0,0.224826488795297,0,0,0,0.196841684047034,0,0,0,0,0,0.196841684047034,0,0,0,0,0,0,0,0,0,0,0,0.331795307148208,0.25177683887957,0,0,0,0.434341260611958,0,0,0,0,0,0.196841684047034,0.331795307148208,0,0.196841684047034,0,0,0,0,0.098420842023517,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196841684047034,0,0,0,0.0291763737286302,0,0,0,0,0,0,0,0,0,0,0.157998923660228,0,0,0.14861960880798,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0.196841684047034,0,0.331795307148208,0,0,0,0.196841684047034,0.56482660381891,0,0,0,0,0.149204573386115,0,0.098420842023517,0,0,0,0,0,0.228294964561177,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393816881980497,0,0,-0.152130825148851,0,0,0,0,0,0,0,0,0,0,0,0,-0.0613201791501264,0,0,0,0,0,0,0,0,0,0,0.148411641821365,0,0,0,0.7471999359185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196841684047034,0,0,0,0,0,0,-0.0149702526621844,-0.24878944489245,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.098420842023517,0.098420842023517,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0188758918518517,0,0,0,0,0.098420842023517,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0687239196508415,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196841684047034,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.331795307148208,0,0,0,0,0,0,0,0,0,0,0,0,0.422134587158018,0,0,0,0,0,0,0,0,0,0,0,0.789628845767455,0,0,0,0,0,0,0,0,0,0,0,0.196841684047034,0,0,0,0,0,0,0.565293872177836,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236356424908286,0,0,0,0.258837852070714,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.434605240679025,0,0,0,0,0,0.241858052834103,0,0,0,0.098420842023517,0,0,0.196841684047034,0,0,0,0,0,0,0,0,0,0,0,0.098420842023517,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.05881557226299,0,0,0,0,0,0,0,0.0741456870500332,0.331795307148208,0,0,0,0,0,0.196841684047034,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19356283682195,0,0,0,0,0,0,0,0,0,0,0,0,0.196841684047034,0,0.227970612190177,0,0,0.134181067525721,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0797419986649781,0,0,0,0,0,0,0,0,0,0,0,0,0,0.357258694094231,0,0,0,0,0.42033207692833,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.794122068850244,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414139521284564,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0499379825215864,0.098420842023517,0,0,0,0,0.196841684047034,0,0,0,0,0.05717075049571,0.165897653574104,0,0,0,0.196841684047034,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.297875910475597,0,0.196841684047034,0.74734137729034,0,0,-0.00451408930171521,0,0,0,0,0.118513500822866,0,0,0,0,0,0,0,0,0.165897653574104,0,0,-0.0400762477245316,0,0,0.156351165467897,0,0,0.896576387083403,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.098420842023517,0.154533145356059,0,0.196841684047034,0.610440399363757,0,0,-0.0178282837100295,0.114417191300273,0,0.331795307148208,0,0.331795307148208,0.0218487889567351,0.284868559882599,0,0.434605240679025,0,0,0,0,0.217302620339513,0,0,0.331795307148208,0,0,0,0,0.0602242418961408,0,0,0,0.460816757978828,0.248200068546858,0,0.321336327319862,0,0,1.45010525950175,0,0,0,0.42171629676784 | |||
|rna_box=103 | |rna_box=103 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=48.93525 | |rna_weight_ug=48.93525 | ||
|sample_age=60 | |sample_age=60 | ||
|sample_category=tissues | |||
|sample_cell_catalog=NA | |sample_cell_catalog=NA | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.49967672783382e-279!GO:0005737;cytoplasm;2.08040162947118e-171!GO:0044444;cytoplasmic part;4.28620939427893e-120!GO:0043226;organelle;1.54866353142334e-97!GO:0043229;intracellular organelle;3.81634167645081e-97!GO:0043227;membrane-bound organelle;2.64281429817283e-87!GO:0043231;intracellular membrane-bound organelle;3.25546216686861e-87!GO:0044422;organelle part;3.06187277529791e-74!GO:0044446;intracellular organelle part;3.77247159893794e-73!GO:0032991;macromolecular complex;1.32479308460169e-59!GO:0005515;protein binding;5.17298998416117e-59!GO:0005739;mitochondrion;2.37842911368056e-54!GO:0030529;ribonucleoprotein complex;3.08472844323391e-47!GO:0016043;cellular component organization and biogenesis;1.78697901217762e-43!GO:0031090;organelle membrane;6.55220963055295e-42!GO:0044429;mitochondrial part;6.40356534873465e-39!GO:0003723;RNA binding;3.92140796000701e-38!GO:0033036;macromolecule localization;5.07045554056089e-37!GO:0015031;protein transport;9.33481448095353e-37!GO:0008104;protein localization;2.10432191938493e-34!GO:0045184;establishment of protein localization;3.82831247535456e-34!GO:0031967;organelle envelope;3.26764433611215e-33!GO:0031975;envelope;3.26764433611215e-33!GO:0046907;intracellular transport;1.06035011085681e-32!GO:0043233;organelle lumen;1.50901463197882e-32!GO:0031974;membrane-enclosed lumen;1.50901463197882e-32!GO:0043234;protein complex;2.25344079386599e-31!GO:0005829;cytosol;3.28566296862442e-28!GO:0005840;ribosome;5.83824198269248e-28!GO:0044237;cellular metabolic process;1.7911567426085e-27!GO:0044428;nuclear part;4.8021090046816e-27!GO:0009058;biosynthetic process;1.84849441032085e-26!GO:0044238;primary metabolic process;2.66127933502603e-26!GO:0005740;mitochondrial envelope;3.7766844752289e-26!GO:0031966;mitochondrial membrane;1.94911956626845e-25!GO:0019538;protein metabolic process;2.2769498871802e-25!GO:0006412;translation;2.39702347578449e-25!GO:0016071;mRNA metabolic process;3.81180001626614e-25!GO:0019866;organelle inner membrane;1.51510154319773e-24!GO:0003735;structural constituent of ribosome;2.01373293535337e-24!GO:0051649;establishment of cellular localization;2.44710105536872e-24!GO:0051641;cellular localization;3.19957899291176e-24!GO:0006886;intracellular protein transport;3.19957899291176e-24!GO:0005743;mitochondrial inner membrane;1.05947401744793e-23!GO:0008380;RNA splicing;5.85790484919975e-23!GO:0006396;RNA processing;1.75778158867943e-22!GO:0044260;cellular macromolecule metabolic process;2.61217582361744e-22!GO:0006119;oxidative phosphorylation;3.59716164389931e-22!GO:0033279;ribosomal subunit;7.28812943620047e-22!GO:0044249;cellular biosynthetic process;1.44509556767973e-21!GO:0006397;mRNA processing;1.55937392755856e-21!GO:0016192;vesicle-mediated transport;3.18784397751064e-21!GO:0044267;cellular protein metabolic process;3.63939887535877e-21!GO:0009059;macromolecule biosynthetic process;4.05930975423644e-21!GO:0065003;macromolecular complex assembly;9.08888098605778e-20!GO:0043170;macromolecule metabolic process;1.10214140363215e-19!GO:0044455;mitochondrial membrane part;6.48667493573613e-19!GO:0048770;pigment granule;8.31221978937908e-18!GO:0042470;melanosome;8.31221978937908e-18!GO:0005794;Golgi apparatus;1.70483933385019e-17!GO:0022607;cellular component assembly;3.50782253154445e-17!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;5.05051297153416e-17!GO:0031980;mitochondrial lumen;1.51362083902963e-16!GO:0005759;mitochondrial matrix;1.51362083902963e-16!GO:0005746;mitochondrial respiratory chain;1.69177552358368e-16!GO:0050136;NADH dehydrogenase (quinone) activity;5.34741907447569e-16!GO:0003954;NADH dehydrogenase activity;5.34741907447569e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;5.34741907447569e-16!GO:0006996;organelle organization and biogenesis;7.21704501201255e-16!GO:0012505;endomembrane system;7.28236787400819e-16!GO:0005681;spliceosome;9.25284067339893e-16!GO:0031982;vesicle;1.17310766134713e-15!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.7073236694724e-15!GO:0031410;cytoplasmic vesicle;5.37550472352987e-15!GO:0031981;nuclear lumen;6.56805686065932e-15!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;6.60357923747773e-15!GO:0016817;hydrolase activity, acting on acid anhydrides;9.26959607232271e-15!GO:0016462;pyrophosphatase activity;1.05937128201894e-14!GO:0044445;cytosolic part;1.7289457189876e-14!GO:0006457;protein folding;4.03751118454338e-14!GO:0030964;NADH dehydrogenase complex (quinone);4.24417375966131e-14!GO:0045271;respiratory chain complex I;4.24417375966131e-14!GO:0005747;mitochondrial respiratory chain complex I;4.24417375966131e-14!GO:0000166;nucleotide binding;4.44374191561798e-14!GO:0017111;nucleoside-triphosphatase activity;6.29526366160639e-14!GO:0031988;membrane-bound vesicle;7.42072241673882e-14!GO:0022613;ribonucleoprotein complex biogenesis and assembly;9.83949009876025e-14!GO:0042775;organelle ATP synthesis coupled electron transport;1.19037012614686e-13!GO:0042773;ATP synthesis coupled electron transport;1.19037012614686e-13!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.2768057194031e-13!GO:0016023;cytoplasmic membrane-bound vesicle;2.89735228645495e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;3.72269952210893e-13!GO:0005783;endoplasmic reticulum;5.60804574464792e-13!GO:0043228;non-membrane-bound organelle;5.74215747395337e-13!GO:0043232;intracellular non-membrane-bound organelle;5.74215747395337e-13!GO:0005634;nucleus;9.1378293657475e-13!GO:0022618;protein-RNA complex assembly;3.66287653450815e-12!GO:0015935;small ribosomal subunit;1.87551075908067e-11!GO:0048193;Golgi vesicle transport;1.96952852850988e-11!GO:0015934;large ribosomal subunit;2.97428744194768e-11!GO:0016874;ligase activity;3.35333441831123e-11!GO:0051082;unfolded protein binding;3.90424560429183e-11!GO:0008565;protein transporter activity;6.59785088876598e-11!GO:0006605;protein targeting;9.13434968339929e-11!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;6.61516382604607e-10!GO:0005654;nucleoplasm;7.30398197007027e-10!GO:0051186;cofactor metabolic process;7.78507508194348e-10!GO:0044265;cellular macromolecule catabolic process;7.81911839385429e-10!GO:0044248;cellular catabolic process;8.22521226916418e-10!GO:0008135;translation factor activity, nucleic acid binding;1.482876418374e-09!GO:0016044;membrane organization and biogenesis;2.23177259564256e-09!GO:0051603;proteolysis involved in cellular protein catabolic process;2.39072478924834e-09!GO:0008092;cytoskeletal protein binding;2.51514241466916e-09!GO:0000502;proteasome complex (sensu Eukaryota);2.55114463766728e-09!GO:0019829;cation-transporting ATPase activity;2.60041234890076e-09!GO:0003924;GTPase activity;2.71947094843491e-09!GO:0017076;purine nucleotide binding;3.18829543473948e-09!GO:0032553;ribonucleotide binding;3.28755998546539e-09!GO:0032555;purine ribonucleotide binding;3.28755998546539e-09!GO:0006511;ubiquitin-dependent protein catabolic process;3.44533346498684e-09!GO:0019941;modification-dependent protein catabolic process;3.92949858994586e-09!GO:0043632;modification-dependent macromolecule catabolic process;3.92949858994586e-09!GO:0044257;cellular protein catabolic process;4.12696877349226e-09!GO:0006461;protein complex assembly;6.13704289558908e-09!GO:0005761;mitochondrial ribosome;6.26750440018042e-09!GO:0000313;organellar ribosome;6.26750440018042e-09!GO:0044451;nucleoplasm part;6.40799332622718e-09!GO:0005768;endosome;7.62103311599717e-09!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.03116896209258e-08!GO:0006446;regulation of translational initiation;1.34061914580158e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.74919085904833e-08!GO:0008134;transcription factor binding;2.07881732485094e-08!GO:0009055;electron carrier activity;2.50435769594334e-08!GO:0051179;localization;2.81430739166727e-08!GO:0009060;aerobic respiration;3.30139949668442e-08!GO:0015630;microtubule cytoskeleton;3.46719547580011e-08!GO:0044432;endoplasmic reticulum part;3.52005247722756e-08!GO:0006413;translational initiation;3.53260450261868e-08!GO:0005635;nuclear envelope;4.12102579012204e-08!GO:0006512;ubiquitin cycle;4.43235753415269e-08!GO:0000398;nuclear mRNA splicing, via spliceosome;5.34097071715413e-08!GO:0000375;RNA splicing, via transesterification reactions;5.34097071715413e-08!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;5.34097071715413e-08!GO:0045333;cellular respiration;6.23190583688491e-08!GO:0031965;nuclear membrane;6.23190583688491e-08!GO:0006810;transport;7.19386328616149e-08!GO:0048523;negative regulation of cellular process;8.43596472129832e-08!GO:0015986;ATP synthesis coupled proton transport;9.61988240138249e-08!GO:0015985;energy coupled proton transport, down electrochemical gradient;9.61988240138249e-08!GO:0007010;cytoskeleton organization and biogenesis;1.26377429157142e-07!GO:0016604;nuclear body;1.43005664149109e-07!GO:0006732;coenzyme metabolic process;1.75903495686647e-07!GO:0003743;translation initiation factor activity;1.79933870770766e-07!GO:0043285;biopolymer catabolic process;2.00279841633692e-07!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);2.12549354076438e-07!GO:0016607;nuclear speck;2.21528656759424e-07!GO:0005525;GTP binding;3.27230255102639e-07!GO:0009057;macromolecule catabolic process;4.66839749349494e-07!GO:0010467;gene expression;5.96419946755872e-07!GO:0030163;protein catabolic process;6.60939054981539e-07!GO:0012501;programmed cell death;7.15515798456545e-07!GO:0044431;Golgi apparatus part;8.02152921855332e-07!GO:0031252;leading edge;8.18836376274075e-07!GO:0006915;apoptosis;8.39761953333233e-07!GO:0006099;tricarboxylic acid cycle;9.68055233468279e-07!GO:0046356;acetyl-CoA catabolic process;9.68055233468279e-07!GO:0030036;actin cytoskeleton organization and biogenesis;1.08024749356187e-06!GO:0008219;cell death;1.10074996609274e-06!GO:0016265;death;1.10074996609274e-06!GO:0006897;endocytosis;1.13539332950463e-06!GO:0010324;membrane invagination;1.13539332950463e-06!GO:0042175;nuclear envelope-endoplasmic reticulum network;1.13539332950463e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;1.15539403922193e-06!GO:0005789;endoplasmic reticulum membrane;1.36064190784948e-06!GO:0006913;nucleocytoplasmic transport;1.46543217183635e-06!GO:0009109;coenzyme catabolic process;2.0070106698528e-06!GO:0048519;negative regulation of biological process;2.56109439268127e-06!GO:0048475;coated membrane;2.59811695514218e-06!GO:0030117;membrane coat;2.59811695514218e-06!GO:0051234;establishment of localization;2.61749845729578e-06!GO:0051169;nuclear transport;2.78460489907848e-06!GO:0005874;microtubule;2.95322973583887e-06!GO:0016469;proton-transporting two-sector ATPase complex;3.47360766052707e-06!GO:0043412;biopolymer modification;3.49801318164252e-06!GO:0006754;ATP biosynthetic process;3.72974299901252e-06!GO:0006753;nucleoside phosphate metabolic process;3.72974299901252e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;4.42020582510349e-06!GO:0009144;purine nucleoside triphosphate metabolic process;4.42020582510349e-06!GO:0006163;purine nucleotide metabolic process;4.64108645131648e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;4.81043449756964e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;4.81043449756964e-06!GO:0006464;protein modification process;4.81043449756964e-06!GO:0046034;ATP metabolic process;4.81043449756964e-06!GO:0016887;ATPase activity;4.84881548153675e-06!GO:0043283;biopolymer metabolic process;4.91076635649963e-06!GO:0051187;cofactor catabolic process;5.0478679994544e-06!GO:0009150;purine ribonucleotide metabolic process;5.42865922481424e-06!GO:0009199;ribonucleoside triphosphate metabolic process;5.4551550352609e-06!GO:0006164;purine nucleotide biosynthetic process;5.54253465707499e-06!GO:0032561;guanyl ribonucleotide binding;5.60340472373858e-06!GO:0019001;guanyl nucleotide binding;5.60340472373858e-06!GO:0006084;acetyl-CoA metabolic process;5.61284476888184e-06!GO:0048471;perinuclear region of cytoplasm;5.61284476888184e-06!GO:0009141;nucleoside triphosphate metabolic process;5.79943783842147e-06!GO:0045045;secretory pathway;5.85772991299613e-06!GO:0009152;purine ribonucleotide biosynthetic process;6.07103434542951e-06!GO:0009142;nucleoside triphosphate biosynthetic process;6.07103434542951e-06!GO:0009201;ribonucleoside triphosphate biosynthetic process;6.07103434542951e-06!GO:0006793;phosphorus metabolic process;6.07103434542951e-06!GO:0006796;phosphate metabolic process;6.07103434542951e-06!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;6.49323118495054e-06!GO:0015399;primary active transmembrane transporter activity;6.49323118495054e-06!GO:0005730;nucleolus;6.53467811676827e-06!GO:0030029;actin filament-based process;6.59239549957142e-06!GO:0045259;proton-transporting ATP synthase complex;7.94716807424705e-06!GO:0005769;early endosome;8.40810810269151e-06!GO:0044453;nuclear membrane part;9.09460055145854e-06!GO:0007264;small GTPase mediated signal transduction;1.08190762602353e-05!GO:0043687;post-translational protein modification;1.1380036528062e-05!GO:0009259;ribonucleotide metabolic process;1.29170775187825e-05!GO:0009056;catabolic process;1.45667680412132e-05!GO:0015078;hydrogen ion transmembrane transporter activity;1.91305870468173e-05!GO:0008654;phospholipid biosynthetic process;1.94080944617255e-05!GO:0043069;negative regulation of programmed cell death;2.08907954050007e-05!GO:0051246;regulation of protein metabolic process;2.1187865967149e-05!GO:0008639;small protein conjugating enzyme activity;2.16183049350114e-05!GO:0015631;tubulin binding;2.30339247501847e-05!GO:0043066;negative regulation of apoptosis;2.48931282944368e-05!GO:0009260;ribonucleotide biosynthetic process;2.59990381220446e-05!GO:0017038;protein import;2.61525717442614e-05!GO:0019787;small conjugating protein ligase activity;2.75507101168743e-05!GO:0030120;vesicle coat;2.75507101168743e-05!GO:0030662;coated vesicle membrane;2.75507101168743e-05!GO:0005773;vacuole;2.80961455480514e-05!GO:0005875;microtubule associated complex;2.95050291516424e-05!GO:0004842;ubiquitin-protein ligase activity;2.96809752209082e-05!GO:0005643;nuclear pore;2.96809752209082e-05!GO:0000139;Golgi membrane;3.33570995680753e-05!GO:0015077;monovalent inorganic cation transmembrane transporter activity;3.42701838504985e-05!GO:0015980;energy derivation by oxidation of organic compounds;3.4610951953569e-05!GO:0042623;ATPase activity, coupled;3.56141360973732e-05!GO:0000245;spliceosome assembly;3.69595902454007e-05!GO:0044440;endosomal part;4.33599406340773e-05!GO:0010008;endosome membrane;4.33599406340773e-05!GO:0006888;ER to Golgi vesicle-mediated transport;5.01584525390577e-05!GO:0032559;adenyl ribonucleotide binding;5.36147935687296e-05!GO:0030554;adenyl nucleotide binding;5.51551733727058e-05!GO:0030695;GTPase regulator activity;5.9935399825796e-05!GO:0005793;ER-Golgi intermediate compartment;6.29172689250447e-05!GO:0000902;cell morphogenesis;6.48664424504779e-05!GO:0032989;cellular structure morphogenesis;6.48664424504779e-05!GO:0005524;ATP binding;7.03822289150614e-05!GO:0005905;coated pit;7.32322699547115e-05!GO:0006916;anti-apoptosis;7.34141452659292e-05!GO:0019899;enzyme binding;7.72748272117598e-05!GO:0016881;acid-amino acid ligase activity;7.99312937782202e-05!GO:0016879;ligase activity, forming carbon-nitrogen bonds;8.70923962748287e-05!GO:0043492;ATPase activity, coupled to movement of substances;9.07514622793011e-05!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;9.89487697618112e-05!GO:0006752;group transfer coenzyme metabolic process;0.000104529567788335!GO:0005770;late endosome;0.000107292152175195!GO:0000323;lytic vacuole;0.000107292152175195!GO:0005764;lysosome;0.000107292152175195!GO:0003779;actin binding;0.000116524567909589!GO:0005083;small GTPase regulator activity;0.0001512016908239!GO:0006613;cotranslational protein targeting to membrane;0.000151751838826622!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00015183113983003!GO:0016491;oxidoreductase activity;0.000157083103067839!GO:0008610;lipid biosynthetic process;0.00016903881783224!GO:0016310;phosphorylation;0.000184555077998548!GO:0005798;Golgi-associated vesicle;0.000185397123316714!GO:0050657;nucleic acid transport;0.000190551824180602!GO:0051236;establishment of RNA localization;0.000190551824180602!GO:0050658;RNA transport;0.000190551824180602!GO:0045786;negative regulation of progression through cell cycle;0.000196748887668097!GO:0006403;RNA localization;0.000202568399503214!GO:0006091;generation of precursor metabolites and energy;0.000203063424033148!GO:0003712;transcription cofactor activity;0.000224502890209237!GO:0019752;carboxylic acid metabolic process;0.000228551121566768!GO:0032940;secretion by cell;0.000277095196471118!GO:0016126;sterol biosynthetic process;0.000296811700257751!GO:0006082;organic acid metabolic process;0.000301369228986423!GO:0030532;small nuclear ribonucleoprotein complex;0.000306295940291159!GO:0051188;cofactor biosynthetic process;0.000306295940291159!GO:0022890;inorganic cation transmembrane transporter activity;0.000320249341530887!GO:0046467;membrane lipid biosynthetic process;0.000338824003388876!GO:0016564;transcription repressor activity;0.000348300160037563!GO:0030135;coated vesicle;0.000374744900001439!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.000408989676186554!GO:0004812;aminoacyl-tRNA ligase activity;0.000408989676186554!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.000408989676186554!GO:0043623;cellular protein complex assembly;0.000423240332524659!GO:0030133;transport vesicle;0.0004431746067913!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.000469262348842531!GO:0043038;amino acid activation;0.000493142464921102!GO:0006418;tRNA aminoacylation for protein translation;0.000493142464921102!GO:0043039;tRNA aminoacylation;0.000493142464921102!GO:0051128;regulation of cellular component organization and biogenesis;0.000498180330807561!GO:0065002;intracellular protein transport across a membrane;0.000499226534475409!GO:0008017;microtubule binding;0.000536557842455087!GO:0048468;cell development;0.000544507533346533!GO:0006606;protein import into nucleus;0.00059168425484347!GO:0030286;dynein complex;0.000619788288446589!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000647811212405951!GO:0051170;nuclear import;0.000664678182041587!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000741405534600977!GO:0001726;ruffle;0.000948651392731874!GO:0031072;heat shock protein binding;0.000950370207861935!GO:0005741;mitochondrial outer membrane;0.000950370207861935!GO:0007005;mitochondrion organization and biogenesis;0.000969969083489867!GO:0008287;protein serine/threonine phosphatase complex;0.000981577779268076!GO:0030027;lamellipodium;0.00108359865220704!GO:0008361;regulation of cell size;0.00110455715057137!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00113895908942668!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00113895908942668!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00113895908942668!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00115471882172909!GO:0016197;endosome transport;0.00116362633757333!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00123809468121276!GO:0044255;cellular lipid metabolic process;0.0013761035618142!GO:0003714;transcription corepressor activity;0.00141518764378469!GO:0031968;organelle outer membrane;0.00142255011449888!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00146709467725924!GO:0008047;enzyme activator activity;0.00154365031494489!GO:0046930;pore complex;0.00158215685882585!GO:0051087;chaperone binding;0.00165386564955119!GO:0016049;cell growth;0.00172031644568606!GO:0006650;glycerophospholipid metabolic process;0.00174169057972236!GO:0019867;outer membrane;0.00174768733723123!GO:0051028;mRNA transport;0.00177150429428607!GO:0042802;identical protein binding;0.00181780912197101!GO:0030867;rough endoplasmic reticulum membrane;0.00181780912197101!GO:0051920;peroxiredoxin activity;0.00185163006714148!GO:0005791;rough endoplasmic reticulum;0.0019935540367408!GO:0030118;clathrin coat;0.00201467852900846!GO:0006612;protein targeting to membrane;0.00205094469481758!GO:0031901;early endosome membrane;0.00225597522853649!GO:0043209;myelin sheath;0.00231554193695688!GO:0046870;cadmium ion binding;0.00235111767036627!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00236499471484913!GO:0005839;proteasome core complex (sensu Eukaryota);0.00244239930067237!GO:0003724;RNA helicase activity;0.00247050620541819!GO:0051287;NAD binding;0.00258171704293551!GO:0012506;vesicle membrane;0.00261853935629472!GO:0032446;protein modification by small protein conjugation;0.0026549271095183!GO:0051789;response to protein stimulus;0.00274832341664771!GO:0006986;response to unfolded protein;0.00274832341664771!GO:0006643;membrane lipid metabolic process;0.0028186340783764!GO:0009117;nucleotide metabolic process;0.00308250121602407!GO:0006366;transcription from RNA polymerase II promoter;0.00314991644426471!GO:0009108;coenzyme biosynthetic process;0.00317294667442585!GO:0001666;response to hypoxia;0.00334950297367829!GO:0000159;protein phosphatase type 2A complex;0.00357577025869233!GO:0007019;microtubule depolymerization;0.00357577025869233!GO:0008250;oligosaccharyl transferase complex;0.00360933823047127!GO:0005762;mitochondrial large ribosomal subunit;0.0036110023548976!GO:0000315;organellar large ribosomal subunit;0.0036110023548976!GO:0006414;translational elongation;0.00372258838584518!GO:0016567;protein ubiquitination;0.00379253861944476!GO:0005868;cytoplasmic dynein complex;0.00379715617041175!GO:0000314;organellar small ribosomal subunit;0.00385130298773387!GO:0005763;mitochondrial small ribosomal subunit;0.00385130298773387!GO:0016791;phosphoric monoester hydrolase activity;0.00389221954223384!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00394226452636466!GO:0043566;structure-specific DNA binding;0.00421856579298414!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00434062898699529!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00437879195458504!GO:0006607;NLS-bearing substrate import into nucleus;0.00444814959116942!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00451059240618957!GO:0030426;growth cone;0.00453716570069134!GO:0006695;cholesterol biosynthetic process;0.00453716570069134!GO:0022406;membrane docking;0.004545756192498!GO:0048278;vesicle docking;0.004545756192498!GO:0005096;GTPase activator activity;0.0048503399061455!GO:0030427;site of polarized growth;0.00513218785157031!GO:0030041;actin filament polymerization;0.00520073772581954!GO:0044433;cytoplasmic vesicle part;0.00534057746629335!GO:0003729;mRNA binding;0.00568204203773551!GO:0009081;branched chain family amino acid metabolic process;0.00569749182892916!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.00590067154195031!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00600394547840975!GO:0051540;metal cluster binding;0.00614304379446997!GO:0051536;iron-sulfur cluster binding;0.00614304379446997!GO:0000151;ubiquitin ligase complex;0.00620971729467133!GO:0003697;single-stranded DNA binding;0.00630728005510499!GO:0016859;cis-trans isomerase activity;0.00630728005510499!GO:0007272;ensheathment of neurons;0.00640099692111108!GO:0008366;axon ensheathment;0.00640099692111108!GO:0007243;protein kinase cascade;0.00646209030279026!GO:0042254;ribosome biogenesis and assembly;0.00661339667824706!GO:0050662;coenzyme binding;0.0067171491829768!GO:0050811;GABA receptor binding;0.00687842340662258!GO:0005813;centrosome;0.00697674988868156!GO:0006629;lipid metabolic process;0.00707020694873948!GO:0046474;glycerophospholipid biosynthetic process;0.00707704505949486!GO:0006904;vesicle docking during exocytosis;0.00717318109109349!GO:0005100;Rho GTPase activator activity;0.00722156533343697!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00722385351873202!GO:0042981;regulation of apoptosis;0.00734861360808326!GO:0007017;microtubule-based process;0.0076522048546541!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0077536385964665!GO:0043067;regulation of programmed cell death;0.00783164393818303!GO:0048487;beta-tubulin binding;0.00788440201557402!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.00794034539425881!GO:0048500;signal recognition particle;0.00810206172141539!GO:0006259;DNA metabolic process;0.00811157305229214!GO:0005938;cell cortex;0.00846080237003909!GO:0004298;threonine endopeptidase activity;0.00849753359775353!GO:0008154;actin polymerization and/or depolymerization;0.00864575792194278!GO:0006892;post-Golgi vesicle-mediated transport;0.00876246611776503!GO:0019717;synaptosome;0.00899175813826714!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00899175813826714!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00899175813826714!GO:0030659;cytoplasmic vesicle membrane;0.00907647933921208!GO:0043284;biopolymer biosynthetic process;0.00917934190306575!GO:0045187;regulation of circadian sleep/wake cycle, sleep;0.00935054721107016!GO:0004667;prostaglandin-D synthase activity;0.00935054721107016!GO:0050802;circadian sleep/wake cycle, sleep;0.00935054721107016!GO:0022410;circadian sleep/wake cycle process;0.00935054721107016!GO:0042749;regulation of circadian sleep/wake cycle;0.00935054721107016!GO:0005885;Arp2/3 protein complex;0.00948574295380739!GO:0004576;oligosaccharyl transferase activity;0.00964199469613101!GO:0006644;phospholipid metabolic process;0.0096435327187875!GO:0007265;Ras protein signal transduction;0.00969161516733696!GO:0008601;protein phosphatase type 2A regulator activity;0.00988634538117834!GO:0044262;cellular carbohydrate metabolic process;0.0100760290941903!GO:0043021;ribonucleoprotein binding;0.0104269127770419!GO:0031114;regulation of microtubule depolymerization;0.010683459433336!GO:0007026;negative regulation of microtubule depolymerization;0.010683459433336!GO:0006891;intra-Golgi vesicle-mediated transport;0.0106988909108181!GO:0006325;establishment and/or maintenance of chromatin architecture;0.0110287624475181!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.0112321669180809!GO:0008139;nuclear localization sequence binding;0.0113054731509821!GO:0033673;negative regulation of kinase activity;0.0118084974097294!GO:0006469;negative regulation of protein kinase activity;0.0118084974097294!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.0121128143834486!GO:0005048;signal sequence binding;0.0121420209846117!GO:0016408;C-acyltransferase activity;0.0125656784575449!GO:0030663;COPI coated vesicle membrane;0.0128816443033863!GO:0030126;COPI vesicle coat;0.0128816443033863!GO:0000059;protein import into nucleus, docking;0.0129763532823652!GO:0008026;ATP-dependent helicase activity;0.0136660316767701!GO:0051168;nuclear export;0.0138080284002968!GO:0004386;helicase activity;0.0140167068509023!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0141016560595424!GO:0051726;regulation of cell cycle;0.0141187831569925!GO:0001558;regulation of cell growth;0.0142631790759795!GO:0008186;RNA-dependent ATPase activity;0.0144338758824234!GO:0030132;clathrin coat of coated pit;0.0144899226159131!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0144899226159131!GO:0045047;protein targeting to ER;0.0144899226159131!GO:0030137;COPI-coated vesicle;0.0147835214905926!GO:0015629;actin cytoskeleton;0.0152338735602607!GO:0031902;late endosome membrane;0.0159145687970214!GO:0000074;regulation of progression through cell cycle;0.0163779082878785!GO:0005815;microtubule organizing center;0.0164116950827777!GO:0016050;vesicle organization and biogenesis;0.0170766800192178!GO:0030384;phosphoinositide metabolic process;0.017140551155558!GO:0009966;regulation of signal transduction;0.0179339139762738!GO:0050839;cell adhesion molecule binding;0.0182122734511154!GO:0009892;negative regulation of metabolic process;0.0185931238368866!GO:0006402;mRNA catabolic process;0.0186888197357342!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0188448862193313!GO:0008320;protein transmembrane transporter activity;0.0189021453249461!GO:0048154;S100 beta binding;0.0189021453249461!GO:0043681;protein import into mitochondrion;0.019345738572419!GO:0030569;chymotrypsin inhibitor activity;0.0195987469544031!GO:0005869;dynactin complex;0.0196628240226556!GO:0030742;GTP-dependent protein binding;0.0197019329059336!GO:0031124;mRNA 3'-end processing;0.0197019329059336!GO:0006323;DNA packaging;0.0197019329059336!GO:0019208;phosphatase regulator activity;0.0198029157326637!GO:0030658;transport vesicle membrane;0.0199403865035662!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0199417146687863!GO:0009083;branched chain family amino acid catabolic process;0.0201001121364077!GO:0004721;phosphoprotein phosphatase activity;0.0201001121364077!GO:0008286;insulin receptor signaling pathway;0.0207501094823894!GO:0006839;mitochondrial transport;0.0208627147302367!GO:0007006;mitochondrial membrane organization and biogenesis;0.0208627147302367!GO:0051348;negative regulation of transferase activity;0.0209495000695759!GO:0007242;intracellular signaling cascade;0.021140058208799!GO:0046488;phosphatidylinositol metabolic process;0.021710641809947!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0226702816418621!GO:0033116;ER-Golgi intermediate compartment membrane;0.0226936311767923!GO:0001508;regulation of action potential;0.0228943827517342!GO:0000096;sulfur amino acid metabolic process;0.0230294314858493!GO:0060052;neurofilament cytoskeleton organization and biogenesis;0.0235371238946708!GO:0051539;4 iron, 4 sulfur cluster binding;0.0237450693299645!GO:0046489;phosphoinositide biosynthetic process;0.0241936846708832!GO:0051129;negative regulation of cellular component organization and biogenesis;0.024249622368199!GO:0035035;histone acetyltransferase binding;0.0253403993302425!GO:0006631;fatty acid metabolic process;0.0253576445423687!GO:0051427;hormone receptor binding;0.0256319296168728!GO:0005856;cytoskeleton;0.0256385850568579!GO:0050767;regulation of neurogenesis;0.0280327581525085!GO:0008312;7S RNA binding;0.0283948672160728!GO:0031324;negative regulation of cellular metabolic process;0.028878159070055!GO:0007050;cell cycle arrest;0.0296590678913435!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0296593294170076!GO:0032787;monocarboxylic acid metabolic process;0.0296964182763301!GO:0045454;cell redox homeostasis;0.0304191990647454!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.0304249316446815!GO:0050750;low-density lipoprotein receptor binding;0.0305098648093078!GO:0045947;negative regulation of translational initiation;0.0305098648093078!GO:0016125;sterol metabolic process;0.0305675320271848!GO:0030127;COPII vesicle coat;0.0306663068310665!GO:0012507;ER to Golgi transport vesicle membrane;0.0306663068310665!GO:0030660;Golgi-associated vesicle membrane;0.0310577609423093!GO:0018196;peptidyl-asparagine modification;0.0330871477665735!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0330871477665735!GO:0044448;cell cortex part;0.0333695308454561!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.0334492053575204!GO:0004004;ATP-dependent RNA helicase activity;0.033491079551018!GO:0030320;cellular monovalent inorganic anion homeostasis;0.033491079551018!GO:0055083;monovalent inorganic anion homeostasis;0.033491079551018!GO:0055064;chloride ion homeostasis;0.033491079551018!GO:0030644;cellular chloride ion homeostasis;0.033491079551018!GO:0006611;protein export from nucleus;0.033491079551018!GO:0006818;hydrogen transport;0.0341872296525287!GO:0019843;rRNA binding;0.0344884173249541!GO:0031123;RNA 3'-end processing;0.035081392315677!GO:0017166;vinculin binding;0.0354278414295612!GO:0016615;malate dehydrogenase activity;0.0362676277979554!GO:0048037;cofactor binding;0.0367765453523221!GO:0004185;serine carboxypeptidase activity;0.0371188389287937!GO:0042026;protein refolding;0.0371188389287937!GO:0019911;structural constituent of myelin sheath;0.0376529504774345!GO:0006633;fatty acid biosynthetic process;0.03785440236478!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.0379996579628597!GO:0019894;kinesin binding;0.0380447160394262!GO:0016272;prefoldin complex;0.0385669511227234!GO:0006974;response to DNA damage stimulus;0.0386413154616702!GO:0051674;localization of cell;0.0387775232469768!GO:0006928;cell motility;0.0387775232469768!GO:0003746;translation elongation factor activity;0.0390008741981653!GO:0035257;nuclear hormone receptor binding;0.0401470002367222!GO:0006399;tRNA metabolic process;0.0405747480566129!GO:0043086;negative regulation of catalytic activity;0.0408199204793428!GO:0019904;protein domain specific binding;0.0408302327320585!GO:0003690;double-stranded DNA binding;0.0411649382231916!GO:0009165;nucleotide biosynthetic process;0.0421110356170366!GO:0032287;myelin maintenance in the peripheral nervous system;0.0428584336615755!GO:0032838;cell projection cytoplasm;0.0428584336615755!GO:0033081;regulation of T cell differentiation in the thymus;0.0428584336615755!GO:0043217;myelin maintenance;0.0428584336615755!GO:0060087;relaxation of vascular smooth muscle;0.0428584336615755!GO:0032839;dendrite cytoplasm;0.0428584336615755!GO:0043488;regulation of mRNA stability;0.0434719939305482!GO:0043487;regulation of RNA stability;0.0434719939305482!GO:0045296;cadherin binding;0.0439462986150963!GO:0006661;phosphatidylinositol biosynthetic process;0.0440385013297567!GO:0016311;dephosphorylation;0.0442353086207974!GO:0005788;endoplasmic reticulum lumen;0.0443960675682906!GO:0006626;protein targeting to mitochondrion;0.0451025118846967!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0451877999623568!GO:0001578;microtubule bundle formation;0.0456761571352638!GO:0009066;aspartate family amino acid metabolic process;0.0460473001106033!GO:0015682;ferric iron transport;0.0460700633607373!GO:0015091;ferric iron transmembrane transporter activity;0.0460700633607373!GO:0031643;positive regulation of myelination;0.0460700633607373!GO:0031371;ubiquitin conjugating enzyme complex;0.0466831639609673!GO:0006665;sphingolipid metabolic process;0.0466831639609673!GO:0005801;cis-Golgi network;0.0466959538083361!GO:0007266;Rho protein signal transduction;0.0468208151389683!GO:0030134;ER to Golgi transport vesicle;0.0481149069076407!GO:0030911;TPR domain binding;0.0481236994246708!GO:0015992;proton transport;0.0484488489798696!GO:0019888;protein phosphatase regulator activity;0.0486614092465503!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0489976757085371!GO:0019902;phosphatase binding;0.0490120428629543!GO:0051252;regulation of RNA metabolic process;0.0492024818803457 | |||
|sample_id=10174 | |sample_id=10174 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=medulla oblongata | |sample_tissue=medulla oblongata | ||
|top_motifs=SOX5:3.73852389428;RFX1:3.59911245011;NKX3-2:3.07160350291;NFIX:3.03742725293;HOX{A6,A7,B6,B7}:3.01367345516;RFX2..5_RFXANK_RFXAP:2.96883014734;SOX2:2.83389199597;MTF1:2.76675141421;PAX4:2.3334223281;SOX{8,9,10}:2.16565126765;FOXP3:2.13793301435;STAT2,4,6:2.08432265958;MYFfamily:2.07894191474;NR3C1:2.05130457441;ZFP161:1.96828194083;PAX6:1.96146279976;PRRX1,2:1.95897242385;NHLH1,2:1.95866653585;GATA4:1.92564710159;REST:1.90724767683;CUX2:1.87352772271;OCT4_SOX2{dimer}:1.83999174362;FOXD3:1.83921996153;MED-1{core}:1.79549051118;MYBL2:1.79422450572;ATF2:1.79015389374;BPTF:1.77374045288;PRDM1:1.73350911724;GFI1B:1.72251128589;HIC1:1.68913669486;LMO2:1.68537216683;LHX3,4:1.67355392324;SMAD1..7,9:1.6436001566;DBP:1.63497727766;NANOG:1.59214977464;RREB1:1.58100180233;MTE{core}:1.5123025682;GTF2I:1.51062084646;KLF4:1.50607166774;FOX{D1,D2}:1.4859417241;SOX17:1.45685450098;SP1:1.45465452388;EBF1:1.43887256893;TGIF1:1.42139109652;HBP1_HMGB_SSRP1_UBTF:1.40968886089;ZBTB6:1.4061889777;JUN:1.37446624518;ZNF423:1.31214314437;FOXP1:1.30334277302;ZIC1..3:1.25577401965;CRX:1.24113799459;RBPJ:1.21681503308;ZNF384:1.19254709091;AR:1.19100514276;EP300:1.19044039304;TLX1..3_NFIC{dimer}:1.15354075389;TFAP2B:1.14955122701;IKZF2:1.14777185207;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.13921893462;TFAP2{A,C}:1.13754577242;MAZ:1.12677761518;PATZ1:1.11635987969;LEF1_TCF7_TCF7L1,2:1.09634015818;XBP1:1.05292719709;HOXA9_MEIS1:1.03372699047;FOXN1:0.989980378414;HMX1:0.944733914406;MZF1:0.913958695544;EGR1..3:0.846097458353;POU6F1:0.841499428429;BREu{core}:0.838892258448;ATF6:0.833369090331;NRF1:0.813204281226;IRF7:0.805456313663;SREBF1,2:0.780424604997;PAX5:0.777556325313;RORA:0.767600981505;POU3F1..4:0.723877276558;STAT1,3:0.722675415314;FOXO1,3,4:0.72236762732;POU5F1:0.685482523307;NKX6-1,2:0.674166366664;VSX1,2:0.663155958103;FOX{I1,J2}:0.662285774645;ZBTB16:0.65451545166;PITX1..3:0.64219333911;PAX2:0.640073451471;HSF1,2:0.636903075947;ESRRA:0.573596072156;GTF2A1,2:0.550298943906;T:0.528184700285;CREB1:0.481742922747;ADNP_IRX_SIX_ZHX:0.441237434583;ONECUT1,2:0.433743547239;NFIL3:0.41419096618;TBP:0.40657997523;NKX2-3_NKX2-5:0.401128226928;ZNF143:0.349065788325;GCM1,2:0.347350029265;TLX2:0.219352291941;ZEB1:0.205237601591;GFI1:0.202865453268;GZF1:0.18459104525;AHR_ARNT_ARNT2:0.164382711674;MAFB:0.151104177023;HOX{A4,D4}:0.131679131839;ALX1:0.112632028646;NKX2-1,4:0.100404757987;EVI1:0.0992990782564;FOX{F1,F2,J1}:0.089013969198;ATF4:0.0758522137683;MYOD1:0.0594988742829;TFAP4:0.0550710212733;ALX4:0.000300607215567;IKZF1:-0.00985820824652;CEBPA,B_DDIT3:-0.0201351377822;MEF2{A,B,C,D}:-0.0328992096424;NR1H4:-0.04385136599;NFY{A,B,C}:-0.0485377587531;GATA6:-0.0515791236377;NKX3-1:-0.0579756660693;ATF5_CREB3:-0.0640509811726;TFDP1:-0.0858991084758;HMGA1,2:-0.102611413977;CDC5L:-0.121074707773;NFE2L2:-0.135189841296;HNF4A_NR2F1,2:-0.149006377477;FOXM1:-0.155998098725;IRF1,2:-0.157542861742;TEAD1:-0.17317734491;NFATC1..3:-0.186382572606;TOPORS:-0.208925429356;SNAI1..3:-0.21881925511;HNF1A:-0.227294865234;bHLH_family:-0.236728988832;AIRE:-0.264951219161;POU1F1:-0.288175996907;NANOG{mouse}:-0.304301604875;PDX1:-0.326752427554;SPZ1:-0.328314466605;XCPE1{core}:-0.334560431538;NR5A1,2:-0.346913797065;FOXA2:-0.352359272385;PAX8:-0.371931659716;DMAP1_NCOR{1,2}_SMARC:-0.38762999841;HAND1,2:-0.412901489894;TP53:-0.421748006623;NFE2L1:-0.4273088989;UFEwm:-0.442536577023;ETS1,2:-0.469099062941;ARID5B:-0.469754120753;NFE2:-0.489656400098;FOXL1:-0.493134341163;NR6A1:-0.498477806962;TBX4,5:-0.502118417944;HIF1A:-0.533429967239;ZNF238:-0.540974985889;TFCP2:-0.574043499815;CDX1,2,4:-0.599101776787;HLF:-0.612773898066;GLI1..3:-0.653230493962;SPIB:-0.685820287393;SPI1:-0.704916916716;FOXQ1:-0.717705720772;NKX2-2,8:-0.756958778481;TEF:-0.773991117664;BACH2:-0.796809583503;TAL1_TCF{3,4,12}:-0.860398772999;PBX1:-0.863748865522;ELF1,2,4:-0.873057338851;FOS_FOS{B,L1}_JUN{B,D}:-0.8926974629;RXR{A,B,G}:-0.896709080856;YY1:-0.903491868116;SRF:-0.936135919851;PAX3,7:-1.01554692293;NFKB1_REL_RELA:-1.03515742381;FOSL2:-1.04036845825;PAX1,9:-1.05748184558;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.06573906197;E2F1..5:-1.20542886365;ELK1,4_GABP{A,B1}:-1.2133468359;RUNX1..3:-1.3369518627;MYB:-1.39574577155;RXRA_VDR{dimer}:-1.44321086116;ZNF148:-1.4843730486;PPARG:-1.54853988753;POU2F1..3:-1.56446540588;HES1:-1.5996582452;ESR1:-1.68279338919;STAT5{A,B}:-1.90595674403;HOX{A5,B5}:-2.28400706388;EN1,2:-2.90010190289 | |top_motifs=SOX5:3.73852389428;RFX1:3.59911245011;NKX3-2:3.07160350291;NFIX:3.03742725293;HOX{A6,A7,B6,B7}:3.01367345516;RFX2..5_RFXANK_RFXAP:2.96883014734;SOX2:2.83389199597;MTF1:2.76675141421;PAX4:2.3334223281;SOX{8,9,10}:2.16565126765;FOXP3:2.13793301435;STAT2,4,6:2.08432265958;MYFfamily:2.07894191474;NR3C1:2.05130457441;ZFP161:1.96828194083;PAX6:1.96146279976;PRRX1,2:1.95897242385;NHLH1,2:1.95866653585;GATA4:1.92564710159;REST:1.90724767683;CUX2:1.87352772271;OCT4_SOX2{dimer}:1.83999174362;FOXD3:1.83921996153;MED-1{core}:1.79549051118;MYBL2:1.79422450572;ATF2:1.79015389374;BPTF:1.77374045288;PRDM1:1.73350911724;GFI1B:1.72251128589;HIC1:1.68913669486;LMO2:1.68537216683;LHX3,4:1.67355392324;SMAD1..7,9:1.6436001566;DBP:1.63497727766;NANOG:1.59214977464;RREB1:1.58100180233;MTE{core}:1.5123025682;GTF2I:1.51062084646;KLF4:1.50607166774;FOX{D1,D2}:1.4859417241;SOX17:1.45685450098;SP1:1.45465452388;EBF1:1.43887256893;TGIF1:1.42139109652;HBP1_HMGB_SSRP1_UBTF:1.40968886089;ZBTB6:1.4061889777;JUN:1.37446624518;ZNF423:1.31214314437;FOXP1:1.30334277302;ZIC1..3:1.25577401965;CRX:1.24113799459;RBPJ:1.21681503308;ZNF384:1.19254709091;AR:1.19100514276;EP300:1.19044039304;TLX1..3_NFIC{dimer}:1.15354075389;TFAP2B:1.14955122701;IKZF2:1.14777185207;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.13921893462;TFAP2{A,C}:1.13754577242;MAZ:1.12677761518;PATZ1:1.11635987969;LEF1_TCF7_TCF7L1,2:1.09634015818;XBP1:1.05292719709;HOXA9_MEIS1:1.03372699047;FOXN1:0.989980378414;HMX1:0.944733914406;MZF1:0.913958695544;EGR1..3:0.846097458353;POU6F1:0.841499428429;BREu{core}:0.838892258448;ATF6:0.833369090331;NRF1:0.813204281226;IRF7:0.805456313663;SREBF1,2:0.780424604997;PAX5:0.777556325313;RORA:0.767600981505;POU3F1..4:0.723877276558;STAT1,3:0.722675415314;FOXO1,3,4:0.72236762732;POU5F1:0.685482523307;NKX6-1,2:0.674166366664;VSX1,2:0.663155958103;FOX{I1,J2}:0.662285774645;ZBTB16:0.65451545166;PITX1..3:0.64219333911;PAX2:0.640073451471;HSF1,2:0.636903075947;ESRRA:0.573596072156;GTF2A1,2:0.550298943906;T:0.528184700285;CREB1:0.481742922747;ADNP_IRX_SIX_ZHX:0.441237434583;ONECUT1,2:0.433743547239;NFIL3:0.41419096618;TBP:0.40657997523;NKX2-3_NKX2-5:0.401128226928;ZNF143:0.349065788325;GCM1,2:0.347350029265;TLX2:0.219352291941;ZEB1:0.205237601591;GFI1:0.202865453268;GZF1:0.18459104525;AHR_ARNT_ARNT2:0.164382711674;MAFB:0.151104177023;HOX{A4,D4}:0.131679131839;ALX1:0.112632028646;NKX2-1,4:0.100404757987;EVI1:0.0992990782564;FOX{F1,F2,J1}:0.089013969198;ATF4:0.0758522137683;MYOD1:0.0594988742829;TFAP4:0.0550710212733;ALX4:0.000300607215567;IKZF1:-0.00985820824652;CEBPA,B_DDIT3:-0.0201351377822;MEF2{A,B,C,D}:-0.0328992096424;NR1H4:-0.04385136599;NFY{A,B,C}:-0.0485377587531;GATA6:-0.0515791236377;NKX3-1:-0.0579756660693;ATF5_CREB3:-0.0640509811726;TFDP1:-0.0858991084758;HMGA1,2:-0.102611413977;CDC5L:-0.121074707773;NFE2L2:-0.135189841296;HNF4A_NR2F1,2:-0.149006377477;FOXM1:-0.155998098725;IRF1,2:-0.157542861742;TEAD1:-0.17317734491;NFATC1..3:-0.186382572606;TOPORS:-0.208925429356;SNAI1..3:-0.21881925511;HNF1A:-0.227294865234;bHLH_family:-0.236728988832;AIRE:-0.264951219161;POU1F1:-0.288175996907;NANOG{mouse}:-0.304301604875;PDX1:-0.326752427554;SPZ1:-0.328314466605;XCPE1{core}:-0.334560431538;NR5A1,2:-0.346913797065;FOXA2:-0.352359272385;PAX8:-0.371931659716;DMAP1_NCOR{1,2}_SMARC:-0.38762999841;HAND1,2:-0.412901489894;TP53:-0.421748006623;NFE2L1:-0.4273088989;UFEwm:-0.442536577023;ETS1,2:-0.469099062941;ARID5B:-0.469754120753;NFE2:-0.489656400098;FOXL1:-0.493134341163;NR6A1:-0.498477806962;TBX4,5:-0.502118417944;HIF1A:-0.533429967239;ZNF238:-0.540974985889;TFCP2:-0.574043499815;CDX1,2,4:-0.599101776787;HLF:-0.612773898066;GLI1..3:-0.653230493962;SPIB:-0.685820287393;SPI1:-0.704916916716;FOXQ1:-0.717705720772;NKX2-2,8:-0.756958778481;TEF:-0.773991117664;BACH2:-0.796809583503;TAL1_TCF{3,4,12}:-0.860398772999;PBX1:-0.863748865522;ELF1,2,4:-0.873057338851;FOS_FOS{B,L1}_JUN{B,D}:-0.8926974629;RXR{A,B,G}:-0.896709080856;YY1:-0.903491868116;SRF:-0.936135919851;PAX3,7:-1.01554692293;NFKB1_REL_RELA:-1.03515742381;FOSL2:-1.04036845825;PAX1,9:-1.05748184558;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.06573906197;E2F1..5:-1.20542886365;ELK1,4_GABP{A,B1}:-1.2133468359;RUNX1..3:-1.3369518627;MYB:-1.39574577155;RXRA_VDR{dimer}:-1.44321086116;ZNF148:-1.4843730486;PPARG:-1.54853988753;POU2F1..3:-1.56446540588;HES1:-1.5996582452;ESR1:-1.68279338919;STAT5{A,B}:-1.90595674403;HOX{A5,B5}:-2.28400706388;EN1,2:-2.90010190289 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10174-103C3;search_select_hide=table117:FF:10174-103C3 | |||
}} | }} | ||
Latest revision as of 12:25, 3 June 2020
| Name: | medulla oblongata - adult, donor10196 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs13800 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2, 3, 4, 5 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
|
| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13800
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13800
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0542 |
| 10 | 10 | 0.0408 |
| 100 | 100 | 0.485 |
| 101 | 101 | 0.358 |
| 102 | 102 | 0.904 |
| 103 | 103 | 0.0156 |
| 104 | 104 | 0.0426 |
| 105 | 105 | 0.422 |
| 106 | 106 | 0.0441 |
| 107 | 107 | 0.256 |
| 108 | 108 | 0.853 |
| 109 | 109 | 0.00528 |
| 11 | 11 | 0.00917 |
| 110 | 110 | 0.0507 |
| 111 | 111 | 0.106 |
| 112 | 112 | 0.703 |
| 113 | 113 | 0.123 |
| 114 | 114 | 0.0927 |
| 115 | 115 | 0.709 |
| 116 | 116 | 0.114 |
| 117 | 117 | 0.00614 |
| 118 | 118 | 0.143 |
| 119 | 119 | 0.209 |
| 12 | 12 | 0.555 |
| 120 | 120 | 0.118 |
| 121 | 121 | 0.728 |
| 122 | 122 | 0.776 |
| 123 | 123 | 0.706 |
| 124 | 124 | 0.215 |
| 125 | 125 | 0.602 |
| 126 | 126 | 0.262 |
| 127 | 127 | 0.418 |
| 128 | 128 | 0.45 |
| 129 | 129 | 0.784 |
| 13 | 13 | 0.00769 |
| 130 | 130 | 0.143 |
| 131 | 131 | 0.0977 |
| 132 | 132 | 0.319 |
| 133 | 133 | 0.0572 |
| 134 | 134 | 0.742 |
| 135 | 135 | 0.0913 |
| 136 | 136 | 0.0137 |
| 137 | 137 | 0.72 |
| 138 | 138 | 0.457 |
| 139 | 139 | 0.0967 |
| 14 | 14 | 0.96 |
| 140 | 140 | 0.981 |
| 141 | 141 | 0.67 |
| 142 | 142 | 0.801 |
| 143 | 143 | 0.00973 |
| 144 | 144 | 0.666 |
| 145 | 145 | 0.369 |
| 146 | 146 | 0.464 |
| 147 | 147 | 0.805 |
| 148 | 148 | 0.719 |
| 149 | 149 | 0.106 |
| 15 | 15 | 0.065 |
| 150 | 150 | 0.126 |
| 151 | 151 | 0.647 |
| 152 | 152 | 0.127 |
| 153 | 153 | 0.723 |
| 154 | 154 | 0.5 |
| 155 | 155 | 0.383 |
| 156 | 156 | 0.281 |
| 157 | 157 | 0.352 |
| 158 | 158 | 0.297 |
| 159 | 159 | 0.0189 |
| 16 | 16 | 0.0581 |
| 160 | 160 | 0.126 |
| 161 | 161 | 0.125 |
| 162 | 162 | 0.781 |
| 163 | 163 | 0.721 |
| 164 | 164 | 0.00633 |
| 165 | 165 | 0.205 |
| 166 | 166 | 0.385 |
| 167 | 167 | 0.902 |
| 168 | 168 | 0.467 |
| 169 | 169 | 0.0169 |
| 17 | 17 | 0.0562 |
| 18 | 18 | 0.0211 |
| 19 | 19 | 0.416 |
| 2 | 2 | 0.877 |
| 20 | 20 | 0.23 |
| 21 | 21 | 0.0274 |
| 22 | 22 | 0.276 |
| 23 | 23 | 0.676 |
| 24 | 24 | 0.0837 |
| 25 | 25 | 0.593 |
| 26 | 26 | 9.29189e-4 |
| 27 | 27 | 0.663 |
| 28 | 28 | 0.954 |
| 29 | 29 | 0.00596 |
| 3 | 3 | 0.0294 |
| 30 | 30 | 0.604 |
| 31 | 31 | 0.647 |
| 32 | 32 | 0.00942 |
| 33 | 33 | 0.114 |
| 34 | 34 | 0.653 |
| 35 | 35 | 0.323 |
| 36 | 36 | 0.248 |
| 37 | 37 | 0.0351 |
| 38 | 38 | 0.412 |
| 39 | 39 | 0.615 |
| 4 | 4 | 0.673 |
| 40 | 40 | 0.11 |
| 41 | 41 | 0.272 |
| 42 | 42 | 0.208 |
| 43 | 43 | 0.0961 |
| 44 | 44 | 0.183 |
| 45 | 45 | 0.768 |
| 46 | 46 | 0.0218 |
| 47 | 47 | 0.0408 |
| 48 | 48 | 0.0266 |
| 49 | 49 | 0.208 |
| 5 | 5 | 0.866 |
| 50 | 50 | 0.4 |
| 51 | 51 | 0.197 |
| 52 | 52 | 0.917 |
| 53 | 53 | 0.644 |
| 54 | 54 | 0.377 |
| 55 | 55 | 0.985 |
| 56 | 56 | 0.629 |
| 57 | 57 | 0.322 |
| 58 | 58 | 0.487 |
| 59 | 59 | 0.0515 |
| 6 | 6 | 0.987 |
| 60 | 60 | 0.206 |
| 61 | 61 | 0.0697 |
| 62 | 62 | 0.209 |
| 63 | 63 | 0.226 |
| 64 | 64 | 0.142 |
| 65 | 65 | 0.232 |
| 66 | 66 | 0.0774 |
| 67 | 67 | 0.29 |
| 68 | 68 | 0.515 |
| 69 | 69 | 0.398 |
| 7 | 7 | 0.179 |
| 70 | 70 | 0.0261 |
| 71 | 71 | 0.00739 |
| 72 | 72 | 0.391 |
| 73 | 73 | 0.0491 |
| 74 | 74 | 0.803 |
| 75 | 75 | 0.00763 |
| 76 | 76 | 0.171 |
| 77 | 77 | 0.276 |
| 78 | 78 | 3.52932e-4 |
| 79 | 79 | 0.44 |
| 8 | 8 | 0.0804 |
| 80 | 80 | 0.573 |
| 81 | 81 | 0.435 |
| 82 | 82 | 0.882 |
| 83 | 83 | 0.0267 |
| 84 | 84 | 0.391 |
| 85 | 85 | 0.615 |
| 86 | 86 | 0.108 |
| 87 | 87 | 4.00928e-4 |
| 88 | 88 | 0.56 |
| 89 | 89 | 0.097 |
| 9 | 9 | 0.661 |
| 90 | 90 | 0.146 |
| 91 | 91 | 0.551 |
| 92 | 92 | 0.814 |
| 93 | 93 | 0.683 |
| 94 | 94 | 0.0874 |
| 95 | 95 | 0.0257 |
| 96 | 96 | 0.993 |
| 97 | 97 | 0.851 |
| 98 | 98 | 0.196 |
| 99 | 99 | 0.659 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13800
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000955 (brain)
0001896 (medulla oblongata)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000481 (multi-tissue structure)
0000073 (regional part of nervous system)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002616 (regional part of brain)
0004733 (segmental subdivision of hindbrain)
0004732 (segmental subdivision of nervous system)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0002298 (brainstem)
0002028 (hindbrain)
0005290 (myelencephalon)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010038 (human medulla oblongata - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)
