FF:10181-103D1: Difference between revisions

Latest revision as of 12:25, 3 June 2020

Name:	spinal cord - adult, donor10196
Species:	Human (Homo sapiens)
Library ID:	CNhs13807
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	spinal cord
dev stage	NA
sex	female
age	60
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	NA
collaboration	Peter Heutink
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005376

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13807		CAGE		DRX008727		DRR009599

Accession ID Hg19

Library id		BAM		CTSS
CNhs13807		DRZ001024		DRZ002409

Accession ID Hg38

Library id		BAM		CTSS
CNhs13807		DRZ012374		DRZ013759

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0.144
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.728
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.32
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0.144
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0.252
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.0204
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.144
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.0778
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.00502
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0.0778
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0.144
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	1.001
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.201
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.0444
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.146
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.718
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.252
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.0288
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.256
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.0267
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0778
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.453
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0.0778
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.202
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0.338
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.525
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.264
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0.499
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0.376
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.0778
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0.526
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0778
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.144
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0.675
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.0778
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0.144
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.578
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.785
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	1.018
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0.441
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.297
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.0778
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0.297
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0.201
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0.693
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.0778
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0.201
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0.0778
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	9.210355e-5
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13807

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.033
MA0003.1	MA0003.1	0.219
MA0004.1	MA0004.1	0.231
MA0006.1	MA0006.1	0.512
MA0007.1	MA0007.1	0.591
MA0009.1	MA0009.1	0.134
MA0014.1	MA0014.1	0.532
MA0017.1	MA0017.1	0.0103
MA0018.2	MA0018.2	0.151
MA0019.1	MA0019.1	0.447
MA0024.1	MA0024.1	0.667
MA0025.1	MA0025.1	0.87
MA0027.1	MA0027.1	0.841
MA0028.1	MA0028.1	0.0113
MA0029.1	MA0029.1	0.0415
MA0030.1	MA0030.1	0.223
MA0031.1	MA0031.1	0.502
MA0035.2	MA0035.2	0.00418
MA0038.1	MA0038.1	0.261
MA0039.2	MA0039.2	0.154
MA0040.1	MA0040.1	0.451
MA0041.1	MA0041.1	0.54
MA0042.1	MA0042.1	0.635
MA0043.1	MA0043.1	0.749
MA0046.1	MA0046.1	0.00244
MA0047.2	MA0047.2	0.194
MA0048.1	MA0048.1	0.0665
MA0050.1	MA0050.1	0.0894
MA0051.1	MA0051.1	0.223
MA0052.1	MA0052.1	0.438
MA0055.1	MA0055.1	8.02545e-5
MA0057.1	MA0057.1	0.744
MA0058.1	MA0058.1	0.294
MA0059.1	MA0059.1	0.0808
MA0060.1	MA0060.1	0.577
MA0061.1	MA0061.1	0.00229
MA0062.2	MA0062.2	6.97988e-5
MA0065.2	MA0065.2	0.00243
MA0066.1	MA0066.1	0.00863
MA0067.1	MA0067.1	0.637
MA0068.1	MA0068.1	0.802
MA0069.1	MA0069.1	0.906
MA0070.1	MA0070.1	0.179
MA0071.1	MA0071.1	0.0217
MA0072.1	MA0072.1	0.528
MA0073.1	MA0073.1	0.497
MA0074.1	MA0074.1	0.167
MA0076.1	MA0076.1	0.0178
MA0077.1	MA0077.1	0.0386
MA0078.1	MA0078.1	0.739
MA0079.2	MA0079.2	0.924
MA0080.2	MA0080.2	3.84401e-7
MA0081.1	MA0081.1	0.0264
MA0083.1	MA0083.1	0.201
MA0084.1	MA0084.1	0.217
MA0087.1	MA0087.1	0.141
MA0088.1	MA0088.1	0.124
MA0090.1	MA0090.1	0.437
MA0091.1	MA0091.1	0.675
MA0092.1	MA0092.1	0.345
MA0093.1	MA0093.1	0.281
MA0099.2	MA0099.2	8.14996e-19
MA0100.1	MA0100.1	0.381
MA0101.1	MA0101.1	0.00144
MA0102.2	MA0102.2	0.505
MA0103.1	MA0103.1	0.0305
MA0104.2	MA0104.2	0.302
MA0105.1	MA0105.1	8.3745e-5
MA0106.1	MA0106.1	0.0139
MA0107.1	MA0107.1	0.00117
MA0108.2	MA0108.2	0.466
MA0111.1	MA0111.1	0.617
MA0112.2	MA0112.2	0.00112
MA0113.1	MA0113.1	0.711
MA0114.1	MA0114.1	0.0124
MA0115.1	MA0115.1	0.797
MA0116.1	MA0116.1	0.00259
MA0117.1	MA0117.1	0.926
MA0119.1	MA0119.1	0.101
MA0122.1	MA0122.1	0.612
MA0124.1	MA0124.1	0.616
MA0125.1	MA0125.1	0.15
MA0131.1	MA0131.1	0.742
MA0135.1	MA0135.1	0.0263
MA0136.1	MA0136.1	1.35877e-11
MA0137.2	MA0137.2	0.00942
MA0138.2	MA0138.2	0.271
MA0139.1	MA0139.1	0.482
MA0140.1	MA0140.1	0.0062
MA0141.1	MA0141.1	0.00737
MA0142.1	MA0142.1	0.395
MA0143.1	MA0143.1	0.0233
MA0144.1	MA0144.1	0.725
MA0145.1	MA0145.1	0.492
MA0146.1	MA0146.1	0.018
MA0147.1	MA0147.1	0.147
MA0148.1	MA0148.1	0.19
MA0149.1	MA0149.1	0.0125
MA0150.1	MA0150.1	3.9474e-4
MA0152.1	MA0152.1	0.671
MA0153.1	MA0153.1	0.178
MA0154.1	MA0154.1	0.0316
MA0155.1	MA0155.1	0.777
MA0156.1	MA0156.1	4.0817e-8
MA0157.1	MA0157.1	0.958
MA0159.1	MA0159.1	0.0196
MA0160.1	MA0160.1	0.0235
MA0162.1	MA0162.1	0.189
MA0163.1	MA0163.1	8.63839e-8
MA0164.1	MA0164.1	0.603
MA0258.1	MA0258.1	0.00942
MA0259.1	MA0259.1	0.563

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13807

Novel motif	Logo	P-value
1	1	0.0535
10	10	0.0743
100	100	0.332
101	101	0.641
102	102	0.875
103	103	0.0713
104	104	0.0973
105	105	0.114
106	106	0.0945
107	107	0.401
108	108	0.795
109	109	0.00103
11	11	0.0086
110	110	0.042
111	111	0.244
112	112	0.553
113	113	0.21
114	114	0.137
115	115	0.842
116	116	0.179
117	117	0.00621
118	118	0.129
119	119	0.286
12	12	0.287
120	120	0.233
121	121	0.577
122	122	0.66
123	123	0.818
124	124	0.43
125	125	0.458
126	126	0.118
127	127	0.579
128	128	0.397
129	129	0.67
13	13	0.00184
130	130	0.221
131	131	0.00858
132	132	0.569
133	133	0.015
134	134	0.904
135	135	0.104
136	136	0.00237
137	137	0.688
138	138	0.889
139	139	0.0549
14	14	0.772
140	140	0.797
141	141	0.637
142	142	0.951
143	143	0.0187
144	144	0.737
145	145	0.263
146	146	0.389
147	147	0.634
148	148	0.805
149	149	0.182
15	15	0.0387
150	150	0.129
151	151	0.769
152	152	0.122
153	153	0.98
154	154	0.467
155	155	0.542
156	156	0.276
157	157	0.38
158	158	0.362
159	159	0.023
16	16	0.0595
160	160	0.277
161	161	0.169
162	162	0.715
163	163	0.885
164	164	0.00582
165	165	0.183
166	166	0.587
167	167	0.964
168	168	0.733
169	169	0.025
17	17	0.0761
18	18	0.0912
19	19	0.409
2	2	0.954
20	20	0.155
21	21	0.0529
22	22	0.271
23	23	0.67
24	24	0.0409
25	25	0.647
26	26	0.00152
27	27	0.863
28	28	0.697
29	29	0.00612
3	3	0.0278
30	30	0.808
31	31	0.979
32	32	0.0386
33	33	0.0479
34	34	0.737
35	35	0.492
36	36	0.265
37	37	0.0339
38	38	0.341
39	39	0.498
4	4	0.947
40	40	0.077
41	41	0.248
42	42	0.178
43	43	0.143
44	44	0.189
45	45	0.725
46	46	0.0499
47	47	0.0568
48	48	0.0403
49	49	0.288
5	5	0.724
50	50	0.369
51	51	0.424
52	52	0.928
53	53	0.837
54	54	0.588
55	55	0.818
56	56	0.568
57	57	0.231
58	58	0.363
59	59	0.0851
6	6	0.952
60	60	0.209
61	61	0.0584
62	62	0.234
63	63	0.207
64	64	0.133
65	65	0.277
66	66	0.1
67	67	0.507
68	68	0.461
69	69	0.604
7	7	0.112
70	70	0.025
71	71	0.00843
72	72	0.322
73	73	0.0399
74	74	0.877
75	75	0.0132
76	76	0.171
77	77	0.179
78	78	0.00985
79	79	0.791
8	8	0.051
80	80	0.63
81	81	0.469
82	82	0.814
83	83	0.0609
84	84	0.338
85	85	0.611
86	86	0.134
87	87	2.66389e-4
88	88	0.677
89	89	0.256
9	9	0.557
90	90	0.141
91	91	0.666
92	92	0.703
93	93	0.508
94	94	0.134
95	95	0.0112
96	96	0.873
97	97	0.676
98	98	0.283
99	99	0.578

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13807

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010159 human spinal cord - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0002240 (spinal cord)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0010314 (structure with developmental contribution from neural crest)
0011216 (organ system subdivision)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0000489 (cavitated compound organ)
0005174 (dorsal region element)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
0001137 (dorsum)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010159 (human spinal cord - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006241 (future spinal cord)
UBERON:0003057 (chordal neural plate)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005376
+|accession_numbers=CAGE;DRX008727;DRR009599;DRZ001024;DRZ002409;DRZ012374;DRZ013759
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0002240,UBERON:0000479,UBERON:0004121,UBERON:0010314,UBERON:0011216,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0000489,UBERON:0005174,UBERON:0010317,UBERON:0001017,UBERON:0001016,UBERON:0001137
 |ancestors_in_cell_lineage_facet=
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr7:100065686..100065701,-!p2@TSC22D4!2.82!665.09!TSC22D4;;chr21:34442439..34442455,+!p1@OLIG1!2.71!513.15!OLIG1;;chr12:106976774..106976788,+!p1@RFX4!2.35!222.61!RFX4;;chr8:53322304..53322340,-!p1@ST18!2.23!168.83!ST18;;chr10:48355030..48355090,+!p1@ZNF488!2.17!188.65!ZNF488;;chr11:61520075..61520136,+!p1@C11orf9!2.10!256.38!C11orf9;;chr21:34442540..34442560,+!p2@OLIG1!2.02!103.45!OLIG1;;chr2:145277882..145277967,-!p3@ZEB2!2.01!171.38!ZEB2;;chr22:38380543..38380569,-!p1@SOX10!1.96!90.11!SOX10;;chr8:53322347..53322378,-!p2@ST18!1.89!76.17!ST18;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.86!72.24!PEG3;;chr3:181429704..181429722,+!p1@SOX2!1.84!68.90!SOX2;;chr12:26277817..26277863,-!p2@BHLHE41!1.80!83.82!BHLHE41;;chr9:77112244..77112262,+!p1@RORB!1.80!68.71!RORB;;chr3:181429741..181429767,+!p2@SOX2!1.76!55.95!SOX2;;chr4:81118647..81118666,+!p1@PRDM8!1.74!70.87!PRDM8;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.73!52.81!POU3F3;;chr12:103351444..103351461,+!p1@ASCL1!1.71!50.45!ASCL1;;chr10:134599649..134599653,-!p1@NKX6-2!1.70!49.67!NKX6-2;;chr9:114287433..114287513,+!p1@ZNF483!1.69!119.75!ZNF483;;chr1:214161272..214161322,+!p1@PROX1!1.69!66.16!PROX1;;chr11:31832658..31832681,-!p1@PAX6!1.69!47.70!PAX6;;chr12:106976678..106976708,+!p2@RFX4!1.68!46.53!RFX4;;chr12:26277956..26277980,-!p1@BHLHE41!1.67!157.05!BHLHE41;;chr16:1031762..1031781,+!p1@SOX8!1.66!44.56!SOX8;;chr19:46801639..46801699,+!p1@HIF3A!1.62!40.44!HIF3A;;chr21:34398234..34398250,+!p1@OLIG2!1.59!38.28!OLIG2;;chr11:113930425..113930471,+!p1@ZBTB16!1.54!47.51!ZBTB16;;chr20:21494684..21494708,-!p1@NKX2-2!1.53!32.78!NKX2-2;;chr4:57547454..57547469,-!p1@HOPX!1.51!31.21!HOPX;;chr17:46692457..46692484,-!p2@HOXB8!1.49!30.23!HOXB8;;chr17:46692287..46692317,-!p7@HOXB8!1.49!30.04!HOXB8;;chr20:21494654..21494678,-!p2@NKX2-2!1.49!30.04!NKX2-2;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.46!27.88!ZBED1;;chr3:147127142..147127168,+!p1@ZIC1!1.45!27.29!ZIC1;;chr15:80696703..80696754,+!p1@ARNT2!1.41!32.39!ARNT2;;chr19:30863271..30863338,+!p1@ZNF536!1.41!24.73!ZNF536;;chr3:187463179..187463201,-!p2@BCL6!1.39!94.82!BCL6;;chr3:147127177..147127194,+!p2@ZIC1!1.38!23.16!ZIC1;;chr4:26344778..26344807,+!p8@RBPJ!1.37!22.38!RBPJ;;chr10:48359344..48359376,+!p2@ZNF488!1.37!22.18!ZNF488;;chr7:63505799..63505904,+!p1@ZNF727!1.36!21.79!ZNF727;;chr12:26277929..26277955,-!p3@BHLHE41!1.34!29.45!BHLHE41;;chr6:126070769..126070801,+!p1@HEY2!1.34!23.75!HEY2;;chr14:33403648..33403710,+!p3@NPAS3!1.34!21.01!NPAS3;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.34!20.81!POU3F3;;chr14:33408072..33408114,+!p2@NPAS3!1.33!24.15!NPAS3;;chr14:33403881..33403924,+!p1@NPAS3!1.31!19.43!NPAS3;;chr21:34442584..34442587,+!p3@OLIG1!1.30!18.85!OLIG1;;chr5:92918919..92918942,+!p1@NR2F1!1.28!78.92!NR2F1;;chr17:46675619..46675642,-!p5@HOXB6!1.28!18.26!HOXB6;;chr17:46692318..46692362,-!p5@HOXB8!1.28!17.86!HOXB8;;chr17:53342311..53342400,+!p1@HLF!1.26!19.63!HLF;;chr8:25902876..25902936,-!p1@EBF2!1.26!17.08!EBF2;;chr17:46690839..46690884,-!p1@HOXB8!1.25!16.88!HOXB8;;chr19:13135582..13135600,+!p3@NFIX!1.25!16.88!NFIX;;chr1:61548225..61548299,+!p1@NFIA!1.24!210.64!NFIA;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!1.24!16.29!SMARCE1;;chr1:61548069..61548102,+!p3@NFIA!1.23!38.28!NFIA;;chr20:62680984..62680999,-!p1@SOX18!1.23!21.01!SOX18;;chr17:46622440..46622477,-!p5@HOXB2!1.23!17.67!HOXB2;;chr11:31832687..31832704,-!p6@PAX6!1.23!15.90!PAX6;;chr5:92918894..92918912,+!p2@NR2F1!1.20!48.10!NR2F1;;chr12:54779511..54779577,-!p5@ZNF385A!1.20!14.92!ZNF385A;;chr11:47400078..47400106,-!p1@SPI1!1.20!14.72!SPI1;;chr11:31839488..31839515,-!p3@PAX6!1.19!14.53!PAX6;;chr4:26344754..26344772,+!p10@RBPJ!1.19!14.33!RBPJ;;chr2:145277640..145277771,-!p1@ZEB2!1.18!186.89!ZEB2;;chr14:73360799..73360817,-!p1@DPF3!1.18!48.49!DPF3;;chr11:8102846..8102892,+!p1@TUB!1.18!19.63!TUB;;chr12:103352277..103352324,+!p2@ASCL1!1.18!14.13!ASCL1;;chr7:115670804..115670825,-!p1@TFEC!1.18!14.13!TFEC;;chr2:145275982..145276003,-!p7@ZEB2!1.16!13.55!ZEB2;;chr17:46688334..46688385,-!p1@HOXB7!1.15!18.85!HOXB7;;chr12:106976656..106976672,+!p4@RFX4!1.15!13.15!RFX4;;chr3:114343768..114343822,-!p1@ZBTB20!1.14!55.56!ZBTB20;;chr19:46800289..46800327,+!p2@HIF3A!1.14!12.96!HIF3A;;chr19:13135386..13135435,+!p4@NFIX!1.14!12.96!NFIX;;chr6:19837592..19837621,+!p1@ID4!1.13!75.78!ID4;;chr3:126076242..126076257,-!p1@KLF15!1.13!15.51!KLF15;;chr16:67198633..67198671,+!p1@HSF4!1.13!12.37!HSF4;;chr8:77593474..77593612,+!p1@ZFHX4!1.11!50.45!ZFHX4;;chr3:114819124..114819200,-!p3@ZBTB20!1.11!27.48!ZBTB20;;chr20:51588873..51588953,+!p1@TSHZ2!1.11!15.90!TSHZ2;;chr5:92919100..92919135,+!p3@NR2F1!1.11!14.53!NR2F1;;chr7:27170359..27170381,-!p1@HOXA4!1.11!11.97!HOXA4;;chr16:51185172..51185197,-!p1@SALL1!1.11!11.97!SALL1;;chr7:28725740..28725778,+!p1@CREB5!1.10!103.85!CREB5;;chr17:46682321..46682362,-!p1@HOXB6!1.09!11.19!HOXB6;;chr11:125034640..125034655,+!p1@PKNOX2!1.09!11.19!PKNOX2;;chr19:9879350..9879419,-!p2@ZNF846!1.08!23.36!ZNF846;;chr1:61548374..61548415,+!p4@NFIA!1.08!20.42!NFIA;;chr4:57547751..57547764,-!p6@HOPX!1.08!10.99!HOPX;;chr10:111987079..111987115,+!p3@MXI1!1.07!14.72!MXI1;;chr7:50344289..50344323,+!p1@IKZF1!1.07!10.80!IKZF1;;chr21:39870339..39870443,-!p1@ERG!1.07!10.80!ERG;;chr20:50159198..50159299,-!p1@NFATC2!1.06!15.31!NFATC2;;chr1:165414325..165414369,-!p1@RXRG!1.06!10.60!RXRG;;chr20:21494602..21494622,-!p3@NKX2-2!1.06!10.60!NKX2-2;;chr2:95963052..95963106,+!p1@KCNIP3!1.06!10.60!KCNIP3;;chr16:51185318..51185348,-!p2@SALL1!1.06!10.60!SALL1;;chr17:46692198..46692237,-!p12@HOXB8!1.06!10.40!HOXB8;;chr17:46692624..46692659,-!p3@HOXB8!1.06!10.40!HOXB8;;chr19:57352109..57352153,-!p2@ZIM2!1.06!10.40!ZIM2;;chr7:27169801..27169844,-!p2@HOXA4!1.06!10.40!HOXA4;;chr18:76739816..76739822,+!p1@SALL3!1.05!10.21!SALL3;;chr12:106976837..106976850,+!p5@RFX4!1.05!10.21!RFX4;;chr9:4300050..4300118,-!p1@GLIS3!1.04!65.57!GLIS3;;chr16:79634624..79634642,-!p1@MAF!1.04!40.05!MAF;;chr7:27142290..27142310,-!p1@HOXA2!1.04!10.01!HOXA2;;chr3:141105235..141105307,+!p7@ZBTB38!1.04!10.01!ZBTB38;;chr19:33793430..33793447,-!p1@CEBPA!1.03!41.42!CEBPA;;chr10:35484053..35484076,+!p1@CREM!1.03!24.73!CREM;;chr2:178128250..178128293,-!p6@NFE2L2!1.02!24.54!NFE2L2;;chr19:21512202..21512225,-!p1@ZNF708!1.01!48.88!ZNF708;;chr17:7492684..7492778,-!p2@SOX15!1.01!20.02!SOX15;;chr13:72441315..72441454,-!p1@DACH1!1.01!18.85!DACH1;;chr19:38085768..38085821,+!p1@ZNF540!1.01!13.94!ZNF540;;chr5:92919068..92919082,+!p5@NR2F1!1.01!11.19!NR2F1;;chr1:40105299..40105326,-!p1@HEYL!1.01!9.23!HEYL;;chr5:124084493..124084524,-!p2@ZNF608!1.00!20.61!ZNF608;;chr19:38183208..38183225,-!p1@ZNF781!1.00!11.78!ZNF781;;chr10:64134120..64134183,+!p1@ZNF365!1.00!10.80!ZNF365;;chr16:85932760..85932775,+!p1@IRF8!1.00!9.03!IRF8;;chr17:38219209..38219230,+!p1@THRA!0.99!117.39!THRA;;chr8:116681194..116681214,-!p1@TRPS1!0.99!84.22!TRPS1;;chr3:114866084..114866118,-!p2@ZBTB20!0.99!32.39!ZBTB20;;chr2:166326200..166326216,+!p1@CSRNP3!0.99!12.96!CSRNP3;;chr8:116681247..116681261,-!p8@TRPS1!0.99!11.39!TRPS1;;chr18:53068911..53068935,-!p4@TCF4!0.99!10.01!TCF4;;chr16:67198683..67198698,+!p2@HSF4!0.99!8.83!HSF4;;chr19:22193731..22193751,-!p1@ZNF208!0.99!8.83!ZNF208;;chr7:27196267..27196311,-!p1@HOXA7!0.99!8.83!HOXA7;;chr7:44143925..44143970,+!p1@AEBP1!0.98!196.31!AEBP1;;chr14:21994337..21994442,-!p1@SALL2!0.98!23.95!SALL2;;chr11:113930291..113930339,+!p2@ZBTB16!0.98!14.13!ZBTB16;;chr11:113930401..113930422,+!p3@ZBTB16!0.98!8.64!ZBTB16;;chr17:53344945..53344977,+!p2@HLF!0.98!8.64!HLF;;chr18:45935720..45935772,-!p1@ZBTB7C!0.98!8.64!ZBTB7C;;chr12:26277798..26277809,-!p5@BHLHE41!0.98!8.44!BHLHE41;;chr17:70117153..70117174,+!p1@SOX9!0.97!87.75!SOX9;;chr19:21512144..21512191,-!p2@ZNF708!0.97!40.24!ZNF708;;chr9:3525867..3525902,-!p3@RFX3!0.97!29.64!RFX3;;chr2:177053386..177053402,+!p1@HOXD1!0.97!8.24!HOXD1;;chr3:114173720..114173794,-!p6@ZBTB20!0.97!8.24!ZBTB20;;chr10:131762504..131762555,-!p1@EBF3!0.97!8.24!EBF3;;chr11:31832862..31832884,-!p2@PAX6!0.97!8.24!PAX6;;chr9:14314131..14314147,-!p2@NFIB!0.96!46.13!NFIB;;chr5:124082322..124082364,-!p1@ZNF608!0.96!21.20!ZNF608;;chr19:21512115..21512135,-!p3@ZNF708!0.96!17.08!ZNF708;;chr3:126076264..126076305,-!p2@KLF15!0.96!11.58!KLF15;;chr2:16080659..16080685,+!p1@MYCN!0.96!8.05!MYCN;;chr8:53322411..53322422,-!p6@ST18!0.96!8.05!ST18;;chr17:46671108..46671147,-!p1@HOXB5!0.96!8.05!HOXB5;;chr17:46691732..46691766,-!p4@HOXB8!0.96!8.05!HOXB8;;chr3:52001396..52001425,-!p4@PCBP4!0.95!14.33!PCBP4;;chr7:86781858..86781879,+!p3@DMTF1!0.95!13.15!DMTF1;;chr7:64023410..64023428,-!p2@ZNF680!0.95!12.56!ZNF680;;chr7:27183291..27183324,-!p1@HOXA5!0.95!7.85!HOXA5;;chr8:80679993..80680011,-!p1@HEY1!0.94!11.39!HEY1;;chr3:141105705..141105770,+!p4@ZBTB38!0.94!9.42!ZBTB38;;chr8:80680024..80680046,-!p2@HEY1!0.94!8.83!HEY1;;chr18:22932080..22932170,-!p1@ZNF521!0.93!32.78!ZNF521;;chr20:3388541..3388575,-!p2@C20orf194!0.93!30.43!C20orf194;;chr9:3525727..3525828,-!p2@RFX3!0.93!19.63!RFX3;;chr2:214016314..214016343,-!p2@IKZF2!0.93!12.76!IKZF2;;chr4:57522598..57522664,-!p3@HOPX!0.93!7.46!HOPX;;chr8:53322384..53322393,-!p7@ST18!0.93!7.46!ST18;;chrX:101186981..101187030,-!p1@ZMAT1!0.92!24.73!ZMAT1;;chr16:79634595..79634620,-!p2@MAF!0.92!13.55!MAF;;chr12:54785074..54785122,-!p2@ZNF385A!0.92!11.58!ZNF385A;;chr11:706938..707008,-!p3@DEAF1!0.92!9.42!DEAF1;;chr2:145275947..145275981,-!p10@ZEB2!0.92!7.26!ZEB2;;chr2:177001290..177001315,+!p1@HOXD3!0.92!7.26!HOXD3;;chr2:2334997..2335053,-!p1@MYT1L!0.92!7.26!MYT1L;;chr2:95963120..95963136,+!p2@KCNIP3!0.92!7.26!KCNIP3;;chr19:58545454..58545498,+!p1@ZSCAN1!0.92!7.26!ZSCAN1;;chr2:208030488..208030551,-!p3@KLF7!0.91!26.50!KLF7;;chr14:21994449..21994524,-!p2@SALL2!0.91!22.38!SALL2;;chr6:126112074..126112144,+!p1@NCOA7!0.90!97.17!NCOA7;;chr1:61547894..61547968,+!p2@NFIA!0.90!21.01!NFIA;;chr5:88179195..88179224,-!p3@MEF2C!0.90!11.39!MEF2C;;chr17:46675558..46675577,-!p2@HOXB6!0.90!6.87!HOXB6;;chr11:31832807..31832823,-!p4@PAX6!0.90!6.87!PAX6;;chr7:441439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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001016;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002240
 |ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0006241,UBERON:0003057,UBERON:0010316
 |fonse_cell_line=
@@ Line 38: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/spinal%2520cord%2520-%2520adult%252c%2520donor10196.CNhs13807.10181-103D1.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/spinal%2520cord%2520-%2520adult%252c%2520donor10196.CNhs13807.10181-103D1.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/spinal%2520cord%2520-%2520adult%252c%2520donor10196.CNhs13807.10181-103D1.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/spinal%2520cord%2520-%2520adult%252c%2520donor10196.CNhs13807.10181-103D1.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/spinal%2520cord%2520-%2520adult%252c%2520donor10196.CNhs13807.10181-103D1.hg38.nobarcode.ctss.bed.gz
 |id=FF:10181-103D1
 |is_a=EFO:0002091;;FF:0010159
 |is_obsolete=
+|library_id=CNhs13807
+|library_id_phase_based=2:CNhs13807
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10181
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10181
 |name=spinal cord - adult, donor10196
 |namespace=FANTOM5
@@ Line 48: / Line 63: @@
 |profile_rnaseq=
 |profile_srnaseq=
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@@ Line 63: / Line 79: @@
 |rna_weight_ug=28.2582
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+|sample_category=tissues
 |sample_cell_catalog=NA
 |sample_cell_line=
@@ Line 84: / Line 101: @@
 |top_motifs=HOX{A6,A7,B6,B7}:3.67024387266;SOX2:3.53396720414;GATA4:3.51171695701;SOX5:3.50330456184;NFIX:3.37183816623;PRDM1:3.29382377163;MYFfamily:3.2075560236;NKX3-2:2.98126828982;RREB1:2.78743989769;ZNF384:2.74787977047;SOX{8,9,10}:2.60330024173;FOXP3:2.59776248446;REST:2.59489161914;ZFP161:2.50006400597;SMAD1..7,9:2.49579551716;MTF1:2.42388140575;EP300:2.41318976046;KLF4:2.41205644768;HIC1:2.41199428924;RBPJ:2.31566782364;ATF2:2.24979898301;MED-1{core}:2.24139420144;NHLH1,2:2.21020837704;ZBTB6:2.17787535353;PAX6:2.12850287327;MTE{core}:2.07986900262;PRRX1,2:2.07966136995;STAT2,4,6:2.07204165405;MZF1:2.03827645529;TFAP2B:1.98219606302;POU3F1..4:1.93941485712;GFI1B:1.93688299119;NR3C1:1.92058298927;TGIF1:1.91084299568;GTF2I:1.89568055094;XBP1:1.83351677644;OCT4_SOX2{dimer}:1.8245092713;BPTF:1.74719472535;NKX6-1,2:1.74681690627;PATZ1:1.73114691036;SOX17:1.72171286061;CUX2:1.72048421031;GCM1,2:1.70587664655;JUN:1.70122571807;FOXD3:1.69466167158;PDX1:1.68300132304;ZIC1..3:1.68057795461;MAZ:1.66823411104;FOXM1:1.64492132012;LMO2:1.62748793345;EGR1..3:1.57316768077;DBP:1.53570042431;MYBL2:1.46696676078;RFX2..5_RFXANK_RFXAP:1.46515058514;EBF1:1.42976346663;IKZF2:1.37588196935;NANOG:1.27213088791;POU6F1:1.25174862465;TFAP2{A,C}:1.24476965753;SP1:1.24396025468;HBP1_HMGB_SSRP1_UBTF:1.23734593668;MAFB:1.2004101642;FOXQ1:1.18684934412;TLX1..3_NFIC{dimer}:1.16226232695;RFX1:1.14434666672;FOX{F1,F2,J1}:1.10161868766;ARID5B:1.0952985218;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.08052198016;AR:1.07805751591;ZNF423:1.06902744914;BREu{core}:1.06724712971;POU5F1:1.02226643861;FOXO1,3,4:1.0194636135;HOXA9_MEIS1:0.975714472181;ONECUT1,2:0.947430357957;SREBF1,2:0.929088362255;PAX5:0.928597333212;AHR_ARNT_ARNT2:0.920073197542;HMX1:0.885331281401;LEF1_TCF7_TCF7L1,2:0.877793611086;STAT1,3:0.859950136775;ZBTB16:0.848407659618;CDC5L:0.836401829359;TOPORS:0.741126368348;PAX4:0.730985800666;RORA:0.684375750288;NRF1:0.668171635982;AIRE:0.659762791806;FOX{D1,D2}:0.64356293127;GZF1:0.620929968842;T:0.611162105765;TFDP1:0.563009612641;IRF7:0.55566283016;GFI1:0.549226560131;VSX1,2:0.539692130165;FOX{I1,J2}:0.495008171339;HMGA1,2:0.476346971657;ALX1:0.46948718748;FOXP1:0.459195460297;NR1H4:0.457488837474;TLX2:0.426924939199;GTF2A1,2:0.391835163477;TFCP2:0.388303655586;UFEwm:0.373059946638;ZNF143:0.368985646972;IRF1,2:0.365341350586;EVI1:0.354850684536;CREB1:0.326407914884;ESRRA:0.297935018469;NKX2-3_NKX2-5:0.278787416779;CDX1,2,4:0.233835789706;PAX2:0.200024248607;ATF4:0.18382879089;ALX4:0.174988912264;CRX:0.149508395085;PBX1:0.109954112237;HOX{A4,D4}:0.0995306657216;SPZ1:0.046878549823;NFIL3:0.0426636347326;NFY{A,B,C}:0.0141450694752;ATF5_CREB3:-0.00260587659602;NFATC1..3:-0.00996238988452;ATF6:-0.0229321931131;IKZF1:-0.0474592678139;NKX3-1:-0.0497039212226;HAND1,2:-0.0806562582579;NANOG{mouse}:-0.107328084477;PITX1..3:-0.150206680256;NKX2-2,8:-0.182381042975;LHX3,4:-0.187744138734;MEF2{A,B,C,D}:-0.194626794159;TBP:-0.201591473763;XCPE1{core}:-0.211367747671;ZEB1:-0.216158146562;NFE2L1:-0.226328881874;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.263858575897;NKX2-1,4:-0.276135286057;DMAP1_NCOR{1,2}_SMARC:-0.309090964141;ZNF238:-0.309468262964;HIF1A:-0.320994447382;TFAP4:-0.331824491074;HNF4A_NR2F1,2:-0.334978194774;FOXN1:-0.339141634823;TEF:-0.342928351887;CEBPA,B_DDIT3:-0.349319402269;SPIB:-0.384497496436;NFE2L2:-0.408146079828;ETS1,2:-0.415450895506;SPI1:-0.454905579882;ADNP_IRX_SIX_ZHX:-0.467468127954;YY1:-0.490275960691;NFE2:-0.497486098116;SRF:-0.548068115411;GATA6:-0.552876359928;FOXA2:-0.55321975123;TBX4,5:-0.556994612488;PAX1,9:-0.651854959537;TP53:-0.654327607854;NR5A1,2:-0.661596068887;MYOD1:-0.666771615209;TEAD1:-0.68993418708;TAL1_TCF{3,4,12}:-0.72038222883;HSF1,2:-0.756458467366;bHLH_family:-0.758770487033;NR6A1:-0.775527673715;RXR{A,B,G}:-0.778352338579;POU1F1:-0.802761916558;POU2F1..3:-0.818205661516;SNAI1..3:-0.826388706032;HNF1A:-0.834375063105;FOXL1:-0.856359275343;HLF:-0.942939673433;ELF1,2,4:-0.980919083107;ESR1:-0.997775135794;BACH2:-1.00579787237;E2F1..5:-1.00631042019;PAX3,7:-1.01307146196;PAX8:-1.0882007879;NFKB1_REL_RELA:-1.09575753923;FOS_FOS{B,L1}_JUN{B,D}:-1.12067213887;RUNX1..3:-1.13549093906;FOSL2:-1.2105363096;MYB:-1.39346568908;GLI1..3:-1.42127401375;ZNF148:-1.43846133562;HES1:-1.49758361342;ELK1,4_GABP{A,B1}:-1.56664163455;RXRA_VDR{dimer}:-1.79133436435;PPARG:-2.26594017857;HOX{A5,B5}:-2.45647373521;EN1,2:-2.82763002264;STAT5{A,B}:-3.03798657674
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10181-103D1;search_select_hide=table117:FF:10181-103D1
 }}

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FF:10181-103D1: Difference between revisions

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Latest revision as of 12:25, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0