FF:10189-103D9: Difference between revisions

Latest revision as of 12:26, 3 June 2020

Name:	appendix, adult
Species:	Human (Homo sapiens)
Library ID:	CNhs12842
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	NA
dev stage	NA
sex	M
age	29
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Biochain
collaboration	NA
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	R1234006-10
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005897

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12842		CAGE		DRX008620		DRR009492

Accession ID Hg19

Library id		BAM		CTSS
CNhs12842		DRZ000917		DRZ002302

Accession ID Hg38

Library id		BAM		CTSS
CNhs12842		DRZ012267		DRZ013652

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.124
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.144
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.106
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.191
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.106
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.191
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.3
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0.106
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.323
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.146
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.467
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0.262
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.106
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.106
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.457
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0.377
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	1.35
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0.0359
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.28
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.046
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0.106
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.262
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.517
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.284
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.106
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.106
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0497
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.106
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.00113
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.467
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.0927
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.106
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0.106
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.0883
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.106
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.363
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.137
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0.106
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0.227
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0.425
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0.262
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.635
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0.106
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0.106
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12842

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.332
MA0003.1	MA0003.1	0.178
MA0004.1	MA0004.1	0.121
MA0006.1	MA0006.1	0.309
MA0007.1	MA0007.1	0.549
MA0009.1	MA0009.1	0.896
MA0014.1	MA0014.1	0.317
MA0017.1	MA0017.1	0.175
MA0018.2	MA0018.2	0.998
MA0019.1	MA0019.1	0.314
MA0024.1	MA0024.1	0.106
MA0025.1	MA0025.1	0.865
MA0027.1	MA0027.1	0.402
MA0028.1	MA0028.1	0.195
MA0029.1	MA0029.1	0.184
MA0030.1	MA0030.1	0.00382
MA0031.1	MA0031.1	0.0777
MA0035.2	MA0035.2	0.415
MA0038.1	MA0038.1	0.374
MA0039.2	MA0039.2	0.188
MA0040.1	MA0040.1	0.946
MA0041.1	MA0041.1	0.908
MA0042.1	MA0042.1	0.565
MA0043.1	MA0043.1	0.409
MA0046.1	MA0046.1	3.65488e-10
MA0047.2	MA0047.2	0.0572
MA0048.1	MA0048.1	0.0308
MA0050.1	MA0050.1	9.52587e-11
MA0051.1	MA0051.1	8.22093e-6
MA0052.1	MA0052.1	0.0703
MA0055.1	MA0055.1	6.57389e-4
MA0057.1	MA0057.1	0.966
MA0058.1	MA0058.1	0.0563
MA0059.1	MA0059.1	0.00115
MA0060.1	MA0060.1	0.539
MA0061.1	MA0061.1	0.418
MA0062.2	MA0062.2	0.715
MA0065.2	MA0065.2	0.166
MA0066.1	MA0066.1	0.00127
MA0067.1	MA0067.1	0.278
MA0068.1	MA0068.1	7.14068e-5
MA0069.1	MA0069.1	0.366
MA0070.1	MA0070.1	0.184
MA0071.1	MA0071.1	0.0283
MA0072.1	MA0072.1	0.151
MA0073.1	MA0073.1	0.826
MA0074.1	MA0074.1	0.293
MA0076.1	MA0076.1	0.791
MA0077.1	MA0077.1	0.72
MA0078.1	MA0078.1	0.0775
MA0079.2	MA0079.2	0.0456
MA0080.2	MA0080.2	6.37867e-10
MA0081.1	MA0081.1	0.025
MA0083.1	MA0083.1	0.00117
MA0084.1	MA0084.1	0.274
MA0087.1	MA0087.1	0.349
MA0088.1	MA0088.1	0.0881
MA0090.1	MA0090.1	0.141
MA0091.1	MA0091.1	0.295
MA0092.1	MA0092.1	0.757
MA0093.1	MA0093.1	0.121
MA0099.2	MA0099.2	3.10524e-17
MA0100.1	MA0100.1	0.282
MA0101.1	MA0101.1	0.968
MA0102.2	MA0102.2	0.214
MA0103.1	MA0103.1	0.0544
MA0104.2	MA0104.2	0.00119
MA0105.1	MA0105.1	9.66562e-5
MA0106.1	MA0106.1	0.00181
MA0107.1	MA0107.1	0.748
MA0108.2	MA0108.2	7.99201e-12
MA0111.1	MA0111.1	0.977
MA0112.2	MA0112.2	0.0115
MA0113.1	MA0113.1	0.422
MA0114.1	MA0114.1	0.978
MA0115.1	MA0115.1	0.602
MA0116.1	MA0116.1	0.00769
MA0117.1	MA0117.1	0.187
MA0119.1	MA0119.1	0.0253
MA0122.1	MA0122.1	0.248
MA0124.1	MA0124.1	0.642
MA0125.1	MA0125.1	0.299
MA0131.1	MA0131.1	0.78
MA0135.1	MA0135.1	0.0525
MA0136.1	MA0136.1	2.66906e-9
MA0137.2	MA0137.2	0.0444
MA0138.2	MA0138.2	0.603
MA0139.1	MA0139.1	0.0747
MA0140.1	MA0140.1	0.0629
MA0141.1	MA0141.1	0.00356
MA0142.1	MA0142.1	0.757
MA0143.1	MA0143.1	0.245
MA0144.1	MA0144.1	0.526
MA0145.1	MA0145.1	0.753
MA0146.1	MA0146.1	0.39
MA0147.1	MA0147.1	4.50961e-4
MA0148.1	MA0148.1	0.51
MA0149.1	MA0149.1	0.0741
MA0150.1	MA0150.1	1.37824e-7
MA0152.1	MA0152.1	0.457
MA0153.1	MA0153.1	5.96661e-7
MA0154.1	MA0154.1	0.14
MA0155.1	MA0155.1	0.916
MA0156.1	MA0156.1	2.5227e-6
MA0157.1	MA0157.1	0.768
MA0159.1	MA0159.1	0.0797
MA0160.1	MA0160.1	0.0349
MA0162.1	MA0162.1	0.45
MA0163.1	MA0163.1	2.9967e-8
MA0164.1	MA0164.1	0.289
MA0258.1	MA0258.1	0.0225
MA0259.1	MA0259.1	0.0137

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12842

Novel motif	Logo	P-value
1	1	0.0164
10	10	0.088
100	100	0.1
101	101	0.853
102	102	0.504
103	103	0.12
104	104	0.986
105	105	0.499
106	106	0.563
107	107	0.768
108	108	0.947
109	109	0.0525
11	11	0.111
110	110	0.0969
111	111	0.215
112	112	0.994
113	113	0.232
114	114	0.00105
115	115	0.837
116	116	0.21
117	117	0.0932
118	118	0.0601
119	119	0.865
12	12	0.947
120	120	0.238
121	121	0.514
122	122	0.707
123	123	0.903
124	124	0.885
125	125	0.15
126	126	0.48
127	127	0.587
128	128	0.878
129	129	0.0772
13	13	0.0634
130	130	0.629
131	131	0.618
132	132	0.173
133	133	0.00393
134	134	0.0841
135	135	0.12
136	136	0.936
137	137	0.913
138	138	0.931
139	139	0.137
14	14	0.707
140	140	0.275
141	141	0.276
142	142	0.641
143	143	0.344
144	144	0.897
145	145	0.944
146	146	0.683
147	147	0.575
148	148	0.516
149	149	0.977
15	15	0.0359
150	150	0.321
151	151	0.365
152	152	0.972
153	153	0.881
154	154	0.606
155	155	0.73
156	156	0.298
157	157	0.0436
158	158	0.14
159	159	0.473
16	16	0.0551
160	160	0.325
161	161	0.878
162	162	0.912
163	163	0.51
164	164	0.0301
165	165	0.751
166	166	0.276
167	167	0.0444
168	168	0.0019
169	169	0.11
17	17	0.473
18	18	0.0191
19	19	0.66
2	2	0.1
20	20	0.0704
21	21	0.311
22	22	0.586
23	23	0.944
24	24	0.572
25	25	0.99
26	26	0.298
27	27	0.392
28	28	0.903
29	29	0.0301
3	3	0.357
30	30	0.0954
31	31	0.63
32	32	0.135
33	33	0.152
34	34	0.34
35	35	0.105
36	36	0.0395
37	37	0.0269
38	38	0.737
39	39	0.76
4	4	0.347
40	40	0.101
41	41	0.18
42	42	0.415
43	43	0.119
44	44	0.536
45	45	0.357
46	46	0.0882
47	47	0.113
48	48	0.132
49	49	0.131
5	5	0.263
50	50	0.662
51	51	0.905
52	52	0.451
53	53	0.393
54	54	0.982
55	55	0.6
56	56	0.693
57	57	0.109
58	58	0.774
59	59	0.786
6	6	0.385
60	60	0.944
61	61	0.951
62	62	0.542
63	63	0.355
64	64	0.194
65	65	0.603
66	66	0.0815
67	67	0.225
68	68	0.81
69	69	0.146
7	7	0.66
70	70	0.0172
71	71	0.0308
72	72	0.369
73	73	0.18
74	74	0.883
75	75	0.0371
76	76	0.216
77	77	0.588
78	78	0.46
79	79	0.0533
8	8	0.147
80	80	0.0196
81	81	0.87
82	82	0.292
83	83	0.238
84	84	0.00636
85	85	0.185
86	86	0.962
87	87	0.936
88	88	0.657
89	89	0.408
9	9	0.36
90	90	0.122
91	91	0.451
92	92	0.622
93	93	0.221
94	94	0.0573
95	95	0.0518
96	96	0.716
97	97	0.418
98	98	0.0987
99	99	0.7

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12842

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010189 human appendix - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0001155 (colon)
0001154 (vermiform appendix)
0000160 (intestine)
0001153 (caecum)
0000479 (tissue)
0001007 (digestive system)
0000064 (organ part)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009854 (digestive tract diverticulum)
0010317 (germ layer / neural crest derived structure)
0009856 (sac)
0001555 (digestive tract)
0000059 (large intestine)
0005409 (gastrointestinal system)
0004907 (lower digestive tract)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010189 (human appendix - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0001045 (midgut)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|id=FF:10189-103D9
+|DRA_sample_Accession=CAGE@SAMD00005897
-|name=appendix, adult
+|accession_numbers=CAGE;DRX008620;DRR009492;DRZ000917;DRZ002302;DRZ012267;DRZ013652
-|sample_id=10189
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0001155,UBERON:0001154,UBERON:0000160,UBERON:0001153,UBERON:0000479,UBERON:0001007,UBERON:0000064,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009854,UBERON:0010317,UBERON:0009856,UBERON:0001555,UBERON:0000059,UBERON:0005409,UBERON:0004907
-|rna_tube_id=103D9
-|rna_box=103
-|rna_position=D9
-|sample_cell_lot=NA
-|sample_cell_catalog=NA
-|sample_company=Biochain
-|rna_lot_number=
-|rna_catalog_number=R1234006-10
-|sample_species=Human (Homo sapiens)
-|sample_strain=
-|sample_dev_stage=
-|sample_tissue=
-|sample_donor(cell lot)=
-|sample_sex=29
-|sample_age=M
-|sample_ethnicity=
-|rna_rin=
-|rna_od260/230=
-|rna_od260/280=
-|sample_cell_type=CELL MIXTURE - tissue sample
-|sample_cell_line=
-|sample_collaboration=
-|sample_experimental_condition=
-|sample_disease=
-|rna_sample_type=
-|rna_extraction_protocol=
-|rna_weight_ug=10
-|rna_concentration=1.51
-|sample_note=
-|profile_hcage=CNhs12842,LSID973,release012,COMPLETED
-|profile_cagescan=,,,
-|profile_srnaseq=,,,
-|profile_rnaseq=,,,
 |ancestors_in_cell_lineage_facet=
-|ancestors_in_anatomy_facet=UBERON:0000059,UBERON:0000061,UBERON:0000062,UBERON:0000063,UBERON:0000064,UBERON:0000077,UBERON:0000160,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0000926,UBERON:0001007,UBERON:0001045,UBERON:0001062,UBERON:0001153,UBERON:0001154,UBERON:0001155,UBERON:0001555,UBERON:0002050,UBERON:0002532,UBERON:0003104,UBERON:0004119,UBERON:0004120,UBERON:0004185,UBERON:0004921,UBERON:0005409,UBERON:0005423,UBERON:0007023,UBERON:0007026,UBERON:0009142
 |ancestors_in_disease_facet=
-|sample_description=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010189
+|comment=
+|created_by=
+|creation_date=
+|data_phase=2
+|datafreeze_phase=2
+|def=
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 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 66: / Line 41: @@
 |fonse_treatment=
 |fonse_treatment_closure=
-|top_motifs=
-|comment=
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-|creation_date=
-|def=
 |has_quality=
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+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/appendix%252c%2520adult.CNhs12842.10189-103D9.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/appendix%252c%2520adult.CNhs12842.10189-103D9.hg19.nobarcode.rdna.fa.gz
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+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10189
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10189
+|name=appendix, adult
 |namespace=FANTOM5
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+|rna_weight_ug=10
+|sample_age=29
+|sample_category=tissues
+|sample_cell_catalog=NA
+|sample_cell_line=
+|sample_cell_lot=NA
+|sample_cell_type=CELL MIXTURE - tissue sample
+|sample_collaboration=
+|sample_company=Biochain
+|sample_description=
+|sample_dev_stage=
+|sample_disease=
+|sample_donor(cell lot)=
+|sample_ethnicity=
+|sample_experimental_condition=
+|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;8.47993205494175e-218!GO:0005737;cytoplasm;2.2246271949714e-158!GO:0043226;organelle;2.86096297075983e-141!GO:0043229;intracellular organelle;5.55472447145567e-141!GO:0043227;membrane-bound organelle;2.68334763378154e-138!GO:0043231;intracellular membrane-bound organelle;4.08227614402654e-138!GO:0005515;protein binding;7.65705499750836e-114!GO:0044444;cytoplasmic part;9.4677890299031e-89!GO:0044422;organelle part;3.65863385622535e-85!GO:0044446;intracellular organelle part;7.71626492214908e-84!GO:0032991;macromolecular complex;6.64367281861725e-71!GO:0005634;nucleus;1.40570165790134e-64!GO:0043170;macromolecule metabolic process;1.01987437858994e-61!GO:0044238;primary metabolic process;4.18420091585694e-61!GO:0044237;cellular metabolic process;5.59704366519315e-61!GO:0003723;RNA binding;1.03883390645452e-54!GO:0044428;nuclear part;1.0791497809816e-53!GO:0030529;ribonucleoprotein complex;2.05964959462048e-51!GO:0043233;organelle lumen;1.50888609459902e-47!GO:0031974;membrane-enclosed lumen;1.50888609459902e-47!GO:0016043;cellular component organization and biogenesis;1.70817089484391e-47!GO:0019538;protein metabolic process;2.85409751298151e-40!GO:0043234;protein complex;9.17047412694837e-39!GO:0033036;macromolecule localization;1.24355627035088e-37!GO:0043283;biopolymer metabolic process;1.88048059139982e-37!GO:0044260;cellular macromolecule metabolic process;5.73068352412703e-35!GO:0044267;cellular protein metabolic process;9.03992247250522e-35!GO:0015031;protein transport;1.80897270284772e-34!GO:0008104;protein localization;1.82158404950818e-34!GO:0045184;establishment of protein localization;2.12178057073575e-34!GO:0006412;translation;1.2994410842674e-33!GO:0005739;mitochondrion;1.88001955894611e-33!GO:0031981;nuclear lumen;1.62336644454531e-32!GO:0016071;mRNA metabolic process;2.72169951011619e-32!GO:0006396;RNA processing;6.84965379116077e-31!GO:0005829;cytosol;1.31246157757058e-30!GO:0010467;gene expression;2.74873255882431e-30!GO:0065003;macromolecular complex assembly;2.80885408797704e-29!GO:0031090;organelle membrane;4.97267163139299e-29!GO:0046907;intracellular transport;5.22292067654721e-29!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.69836068544463e-28!GO:0005840;ribosome;5.16517025822437e-28!GO:0031967;organelle envelope;1.30465254094824e-27!GO:0008380;RNA splicing;2.15534134823512e-27!GO:0031975;envelope;2.35221806867942e-27!GO:0006996;organelle organization and biogenesis;6.99288560770623e-27!GO:0022607;cellular component assembly;8.47883953495501e-27!GO:0006397;mRNA processing;5.64034587237147e-26!GO:0009059;macromolecule biosynthetic process;1.48117090457872e-25!GO:0006886;intracellular protein transport;5.28681809801604e-25!GO:0003735;structural constituent of ribosome;1.17663301606783e-24!GO:0044429;mitochondrial part;6.4117226880968e-24!GO:0033279;ribosomal subunit;1.76181954623087e-23!GO:0043228;non-membrane-bound organelle;1.96914112526546e-23!GO:0043232;intracellular non-membrane-bound organelle;1.96914112526546e-23!GO:0008134;transcription factor binding;2.22702891783625e-23!GO:0051641;cellular localization;1.50318786826679e-22!GO:0051649;establishment of cellular localization;2.43549911533039e-22!GO:0005654;nucleoplasm;1.25655229385967e-21!GO:0000166;nucleotide binding;1.31970162498592e-21!GO:0012501;programmed cell death;1.88702609097165e-21!GO:0006915;apoptosis;2.91656735222096e-21!GO:0006259;DNA metabolic process;9.15976983466265e-21!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.33290184733376e-20!GO:0008219;cell death;1.90076617079196e-20!GO:0016265;death;1.90076617079196e-20!GO:0044249;cellular biosynthetic process;3.04390602638175e-20!GO:0009058;biosynthetic process;4.66750275779324e-20!GO:0005681;spliceosome;1.19206996175624e-19!GO:0050794;regulation of cellular process;5.56793921595483e-19!GO:0044445;cytosolic part;3.60720597102055e-18!GO:0050789;regulation of biological process;1.0962088970634e-17!GO:0048523;negative regulation of cellular process;1.49588284421257e-17!GO:0044451;nucleoplasm part;1.5517577347717e-17!GO:0003676;nucleic acid binding;2.27091911257842e-17!GO:0048770;pigment granule;4.47326412143657e-17!GO:0042470;melanosome;4.47326412143657e-17!GO:0022613;ribonucleoprotein complex biogenesis and assembly;5.56750637355867e-17!GO:0005740;mitochondrial envelope;3.04812454503293e-16!GO:0019866;organelle inner membrane;3.33253521660767e-16!GO:0031966;mitochondrial membrane;1.23385843834256e-15!GO:0006119;oxidative phosphorylation;1.7829986689456e-15!GO:0032553;ribonucleotide binding;1.81715003675081e-15!GO:0032555;purine ribonucleotide binding;1.81715003675081e-15!GO:0048519;negative regulation of biological process;2.0420341877862e-15!GO:0016070;RNA metabolic process;4.25515720716663e-15!GO:0017076;purine nucleotide binding;5.81958022930393e-15!GO:0044265;cellular macromolecule catabolic process;7.98313964690468e-15!GO:0051603;proteolysis involved in cellular protein catabolic process;9.2167598728536e-15!GO:0019941;modification-dependent protein catabolic process;1.70408003949441e-14!GO:0043632;modification-dependent macromolecule catabolic process;1.70408003949441e-14!GO:0005743;mitochondrial inner membrane;1.70422610909946e-14!GO:0006511;ubiquitin-dependent protein catabolic process;1.83429680815788e-14!GO:0043412;biopolymer modification;2.62319396114492e-14!GO:0006366;transcription from RNA polymerase II promoter;2.68849479344201e-14!GO:0044257;cellular protein catabolic process;3.34264800027337e-14!GO:0042981;regulation of apoptosis;1.12600234953057e-13!GO:0022618;protein-RNA complex assembly;1.39952212165626e-13!GO:0016192;vesicle-mediated transport;1.51998258302666e-13!GO:0006913;nucleocytoplasmic transport;1.80318322435533e-13!GO:0043285;biopolymer catabolic process;1.85420316586977e-13!GO:0043067;regulation of programmed cell death;2.39166848240241e-13!GO:0003712;transcription cofactor activity;2.7653794077022e-13!GO:0015935;small ribosomal subunit;3.84194695050048e-13!GO:0051169;nuclear transport;3.85280109171936e-13!GO:0043687;post-translational protein modification;4.49345807244436e-13!GO:0006464;protein modification process;5.33089667491665e-13!GO:0007049;cell cycle;5.79904876363031e-13!GO:0065007;biological regulation;6.91903797756142e-13!GO:0005794;Golgi apparatus;7.75582650623322e-13!GO:0006605;protein targeting;1.02298423934477e-12!GO:0006793;phosphorus metabolic process;1.10297854257781e-12!GO:0006796;phosphate metabolic process;1.10297854257781e-12!GO:0005524;ATP binding;1.33187964069316e-12!GO:0016462;pyrophosphatase activity;1.55323191355599e-12!GO:0016874;ligase activity;1.68086706410403e-12!GO:0032559;adenyl ribonucleotide binding;1.90623612140978e-12!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.91740593549841e-12!GO:0016604;nuclear body;1.92577770629899e-12!GO:0016817;hydrolase activity, acting on acid anhydrides;3.12553293850624e-12!GO:0012505;endomembrane system;3.32672086699358e-12!GO:0005635;nuclear envelope;4.12041430267923e-12!GO:0017111;nucleoside-triphosphatase activity;4.70291177499209e-12!GO:0030554;adenyl nucleotide binding;7.2683099438117e-12!GO:0006512;ubiquitin cycle;7.3231932671575e-12!GO:0005746;mitochondrial respiratory chain;8.74450186407578e-12!GO:0044455;mitochondrial membrane part;9.52527778885799e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.02342585174695e-11!GO:0016310;phosphorylation;2.09045164037157e-11!GO:0015934;large ribosomal subunit;2.32939567737901e-11!GO:0048193;Golgi vesicle transport;2.34985837423858e-11!GO:0009057;macromolecule catabolic process;2.69357340660358e-11!GO:0050136;NADH dehydrogenase (quinone) activity;2.82069932064022e-11!GO:0003954;NADH dehydrogenase activity;2.82069932064022e-11!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.82069932064022e-11!GO:0030163;protein catabolic process;2.88980816290749e-11!GO:0051276;chromosome organization and biogenesis;3.62646481741759e-11!GO:0019899;enzyme binding;3.63549652343596e-11!GO:0008135;translation factor activity, nucleic acid binding;3.72592173341966e-11!GO:0006325;establishment and/or maintenance of chromatin architecture;4.41357825046649e-11!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.83829265552249e-11!GO:0031965;nuclear membrane;6.07284893518958e-11!GO:0006461;protein complex assembly;6.48312249790465e-11!GO:0005783;endoplasmic reticulum;9.55763680940751e-11!GO:0007243;protein kinase cascade;1.21371636475019e-10!GO:0000502;proteasome complex (sensu Eukaryota);1.23659548730074e-10!GO:0005730;nucleolus;1.95294021429182e-10!GO:0031980;mitochondrial lumen;2.0538867387459e-10!GO:0005759;mitochondrial matrix;2.0538867387459e-10!GO:0006323;DNA packaging;2.14994404061714e-10!GO:0048522;positive regulation of cellular process;2.19705719999049e-10!GO:0048518;positive regulation of biological process;4.15798941987771e-10!GO:0000398;nuclear mRNA splicing, via spliceosome;4.22783207737546e-10!GO:0000375;RNA splicing, via transesterification reactions;4.22783207737546e-10!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;4.22783207737546e-10!GO:0006950;response to stress;5.0843156631753e-10!GO:0030036;actin cytoskeleton organization and biogenesis;5.15985182995805e-10!GO:0006457;protein folding;5.21729416212109e-10!GO:0031324;negative regulation of cellular metabolic process;5.39143805456352e-10!GO:0044248;cellular catabolic process;5.39143805456352e-10!GO:0016607;nuclear speck;6.21158260795721e-10!GO:0051246;regulation of protein metabolic process;6.21655104763736e-10!GO:0016564;transcription repressor activity;1.23889350310478e-09!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.29113836774736e-09!GO:0009892;negative regulation of metabolic process;1.8753727669352e-09!GO:0005694;chromosome;1.90564575618538e-09!GO:0030964;NADH dehydrogenase complex (quinone);2.44457874768416e-09!GO:0045271;respiratory chain complex I;2.44457874768416e-09!GO:0005747;mitochondrial respiratory chain complex I;2.44457874768416e-09!GO:0042775;organelle ATP synthesis coupled electron transport;3.37564353025378e-09!GO:0042773;ATP synthesis coupled electron transport;3.37564353025378e-09!GO:0017038;protein import;4.71392273164631e-09!GO:0008565;protein transporter activity;5.38322997478215e-09!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;6.54595681583416e-09!GO:0022402;cell cycle process;6.71879610977352e-09!GO:0043069;negative regulation of programmed cell death;6.9436123089616e-09!GO:0003743;translation initiation factor activity;8.25947867816566e-09!GO:0007242;intracellular signaling cascade;8.27620348841094e-09!GO:0043066;negative regulation of apoptosis;8.67766252318852e-09!GO:0030029;actin filament-based process;9.23457468021996e-09!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;9.23457468021996e-09!GO:0006974;response to DNA damage stimulus;1.07495077657775e-08!GO:0044427;chromosomal part;1.44189348923778e-08!GO:0006446;regulation of translational initiation;1.52014878132578e-08!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.6170957068073e-08!GO:0030695;GTPase regulator activity;1.6852007797492e-08!GO:0016481;negative regulation of transcription;1.80264459621642e-08!GO:0008092;cytoskeletal protein binding;2.22809484669511e-08!GO:0008639;small protein conjugating enzyme activity;2.36147400659845e-08!GO:0031252;leading edge;2.41188708741859e-08!GO:0007249;I-kappaB kinase/NF-kappaB cascade;2.59929343306912e-08!GO:0006413;translational initiation;2.88857117035868e-08!GO:0007264;small GTPase mediated signal transduction;2.88857117035868e-08!GO:0004842;ubiquitin-protein ligase activity;2.89956081538326e-08!GO:0000785;chromatin;3.5396249231835e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.7455275565171e-08!GO:0009055;electron carrier activity;3.94622091776379e-08!GO:0044453;nuclear membrane part;3.99438956601444e-08!GO:0006333;chromatin assembly or disassembly;4.6076597949291e-08!GO:0006606;protein import into nucleus;6.24644212513166e-08!GO:0051170;nuclear import;6.35738099898231e-08!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;6.95608352576654e-08!GO:0051082;unfolded protein binding;8.76440274703801e-08!GO:0051726;regulation of cell cycle;1.18196555703626e-07!GO:0006916;anti-apoptosis;1.21081784245016e-07!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.37643127346339e-07!GO:0031982;vesicle;1.45198017218356e-07!GO:0000074;regulation of progression through cell cycle;1.48584785830504e-07!GO:0016568;chromatin modification;1.57896813561067e-07!GO:0005793;ER-Golgi intermediate compartment;1.70815700074299e-07!GO:0009966;regulation of signal transduction;1.96997077149926e-07!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.10773819862346e-07!GO:0042623;ATPase activity, coupled;2.24850106748021e-07!GO:0009719;response to endogenous stimulus;2.36013182019598e-07!GO:0007265;Ras protein signal transduction;2.45940155094255e-07!GO:0019787;small conjugating protein ligase activity;2.76869144965068e-07!GO:0005768;endosome;2.78647569393594e-07!GO:0019829;cation-transporting ATPase activity;2.88063686169849e-07!GO:0004386;helicase activity;3.30441289059273e-07!GO:0043566;structure-specific DNA binding;3.59232071820727e-07!GO:0016563;transcription activator activity;4.0546233588478e-07!GO:0016887;ATPase activity;4.24505167619763e-07!GO:0031410;cytoplasmic vesicle;4.28554867090444e-07!GO:0005643;nuclear pore;4.59661564495444e-07!GO:0005083;small GTPase regulator activity;5.00602918211213e-07!GO:0006403;RNA localization;6.55706723313663e-07!GO:0050657;nucleic acid transport;7.39823425979194e-07!GO:0051236;establishment of RNA localization;7.39823425979194e-07!GO:0050658;RNA transport;7.39823425979194e-07!GO:0031988;membrane-bound vesicle;8.47477169013553e-07!GO:0007010;cytoskeleton organization and biogenesis;8.90837251696367e-07!GO:0003713;transcription coactivator activity;9.32693792817293e-07!GO:0003714;transcription corepressor activity;9.75917337564783e-07!GO:0019222;regulation of metabolic process;1.02509059151799e-06!GO:0044432;endoplasmic reticulum part;1.06362357606492e-06!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.13416309998712e-06!GO:0065004;protein-DNA complex assembly;1.24555192793508e-06!GO:0006260;DNA replication;1.4759457097974e-06!GO:0016772;transferase activity, transferring phosphorus-containing groups;1.47690549426532e-06!GO:0003779;actin binding;1.48835358258885e-06!GO:0005761;mitochondrial ribosome;1.49165151415686e-06!GO:0000313;organellar ribosome;1.49165151415686e-06!GO:0048475;coated membrane;1.51863098500138e-06!GO:0030117;membrane coat;1.51863098500138e-06!GO:0030120;vesicle coat;1.99203976989718e-06!GO:0030662;coated vesicle membrane;1.99203976989718e-06!GO:0009060;aerobic respiration;2.05074940057058e-06!GO:0006281;DNA repair;2.24020005376832e-06!GO:0016023;cytoplasmic membrane-bound vesicle;2.25202085220659e-06!GO:0003697;single-stranded DNA binding;2.63247239519423e-06!GO:0043065;positive regulation of apoptosis;3.08809185183467e-06!GO:0008047;enzyme activator activity;3.5955679162834e-06!GO:0016879;ligase activity, forming carbon-nitrogen bonds;5.01905513089052e-06!GO:0005773;vacuole;5.25705516967573e-06!GO:0045786;negative regulation of progression through cell cycle;5.48118921531531e-06!GO:0043068;positive regulation of programmed cell death;5.51640371093551e-06!GO:0000278;mitotic cell cycle;5.80082553693903e-06!GO:0045892;negative regulation of transcription, DNA-dependent;7.30129214652225e-06!GO:0045333;cellular respiration;7.33227720643143e-06!GO:0051186;cofactor metabolic process;7.99362810573561e-06!GO:0016881;acid-amino acid ligase activity;8.35283978607719e-06!GO:0002376;immune system process;8.35283978607719e-06!GO:0000323;lytic vacuole;9.51047192152881e-06!GO:0005764;lysosome;9.51047192152881e-06!GO:0048468;cell development;9.75981439811177e-06!GO:0015986;ATP synthesis coupled proton transport;9.79756768867156e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;9.79756768867156e-06!GO:0005839;proteasome core complex (sensu Eukaryota);1.08606709220059e-05!GO:0009056;catabolic process;1.11720757863531e-05!GO:0006888;ER to Golgi vesicle-mediated transport;1.20520734297049e-05!GO:0051028;mRNA transport;1.2414436331176e-05!GO:0030532;small nuclear ribonucleoprotein complex;1.24933888133354e-05!GO:0000245;spliceosome assembly;1.34099899469195e-05!GO:0008026;ATP-dependent helicase activity;1.37892553278378e-05!GO:0046930;pore complex;1.48250216993125e-05!GO:0006099;tricarboxylic acid cycle;1.53435385425419e-05!GO:0046356;acetyl-CoA catabolic process;1.53435385425419e-05!GO:0045259;proton-transporting ATP synthase complex;1.64087593219447e-05!GO:0005096;GTPase activator activity;1.90756790157629e-05!GO:0048471;perinuclear region of cytoplasm;1.91983228467455e-05!GO:0015078;hydrogen ion transmembrane transporter activity;2.34193296710538e-05!GO:0032446;protein modification by small protein conjugation;2.36933986654894e-05!GO:0009615;response to virus;2.39117257127135e-05!GO:0005770;late endosome;2.58648599738317e-05!GO:0006334;nucleosome assembly;3.41979993409505e-05!GO:0006732;coenzyme metabolic process;3.5055925175071e-05!GO:0065002;intracellular protein transport across a membrane;3.70419591622401e-05!GO:0016567;protein ubiquitination;3.74459123783155e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;3.96476242170092e-05!GO:0042802;identical protein binding;4.79125723496152e-05!GO:0003924;GTPase activity;4.81471360180973e-05!GO:0031497;chromatin assembly;5.57741143596585e-05!GO:0004298;threonine endopeptidase activity;6.05687014265599e-05!GO:0042254;ribosome biogenesis and assembly;6.29630842596915e-05!GO:0005525;GTP binding;6.29630842596915e-05!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;6.71280945858767e-05!GO:0004812;aminoacyl-tRNA ligase activity;6.71280945858767e-05!GO:0016875;ligase activity, forming carbon-oxygen bonds;6.71280945858767e-05!GO:0009259;ribonucleotide metabolic process;6.87572501099667e-05!GO:0006084;acetyl-CoA metabolic process;7.29784432278226e-05!GO:0001726;ruffle;7.39018532999081e-05!GO:0016469;proton-transporting two-sector ATPase complex;8.39203067250011e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;8.98825595404717e-05!GO:0030027;lamellipodium;8.98825595404717e-05!GO:0046649;lymphocyte activation;9.09624824972473e-05!GO:0065009;regulation of a molecular function;9.15025862189994e-05!GO:0005667;transcription factor complex;9.44228872237012e-05!GO:0005813;centrosome;0.000106091790658006!GO:0006917;induction of apoptosis;0.000111498600192583!GO:0009152;purine ribonucleotide biosynthetic process;0.000115902633584691!GO:0009150;purine ribonucleotide metabolic process;0.00012041423773939!GO:0044440;endosomal part;0.000126694839155996!GO:0010008;endosome membrane;0.000126694839155996!GO:0009109;coenzyme catabolic process;0.000130133757213968!GO:0051427;hormone receptor binding;0.000135849453287222!GO:0016197;endosome transport;0.00013660023312916!GO:0042175;nuclear envelope-endoplasmic reticulum network;0.00013660023312916!GO:0006613;cotranslational protein targeting to membrane;0.000143876929746453!GO:0045893;positive regulation of transcription, DNA-dependent;0.000149556433849022!GO:0009260;ribonucleotide biosynthetic process;0.000149993560881726!GO:0043038;amino acid activation;0.000149993560881726!GO:0006418;tRNA aminoacylation for protein translation;0.000149993560881726!GO:0043039;tRNA aminoacylation;0.000149993560881726!GO:0006163;purine nucleotide metabolic process;0.000152690533517853!GO:0006164;purine nucleotide biosynthetic process;0.000157667834512555!GO:0051187;cofactor catabolic process;0.000157667834512555!GO:0004674;protein serine/threonine kinase activity;0.000159258623704446!GO:0006402;mRNA catabolic process;0.000162894197239834!GO:0005789;endoplasmic reticulum membrane;0.000171364369320377!GO:0006401;RNA catabolic process;0.000179938719674581!GO:0012502;induction of programmed cell death;0.000180586145941017!GO:0016044;membrane organization and biogenesis;0.00018296135323996!GO:0005798;Golgi-associated vesicle;0.000184443604309389!GO:0044431;Golgi apparatus part;0.000184443604309389!GO:0031323;regulation of cellular metabolic process;0.000185028597993978!GO:0045941;positive regulation of transcription;0.00018694723606596!GO:0006754;ATP biosynthetic process;0.000202202394328419!GO:0006753;nucleoside phosphate metabolic process;0.000202202394328419!GO:0033673;negative regulation of kinase activity;0.000206163221246363!GO:0006469;negative regulation of protein kinase activity;0.000206163221246363!GO:0019904;protein domain specific binding;0.000208017710668285!GO:0051168;nuclear export;0.000208288435843362!GO:0000151;ubiquitin ligase complex;0.000224679454068561!GO:0003724;RNA helicase activity;0.000224679454068561!GO:0045121;lipid raft;0.000227997464288998!GO:0009893;positive regulation of metabolic process;0.000228465060297881!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.000238887467045571!GO:0003702;RNA polymerase II transcription factor activity;0.000240750767834605!GO:0035257;nuclear hormone receptor binding;0.000268013493874988!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.000269209668443494!GO:0009142;nucleoside triphosphate biosynthetic process;0.0003061732334005!GO:0009201;ribonucleoside triphosphate biosynthetic process;0.0003061732334005!GO:0005885;Arp2/3 protein complex;0.000314239850330612!GO:0008154;actin polymerization and/or depolymerization;0.000314239850330612!GO:0032561;guanyl ribonucleotide binding;0.000317664914449169!GO:0019001;guanyl nucleotide binding;0.000317664914449169!GO:0009967;positive regulation of signal transduction;0.000325841169755058!GO:0006468;protein amino acid phosphorylation;0.000327333260229634!GO:0003690;double-stranded DNA binding;0.000343447816596092!GO:0019843;rRNA binding;0.000345273618647585!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;0.000349350685944178!GO:0009145;purine nucleoside triphosphate biosynthetic process;0.000349350685944178!GO:0005815;microtubule organizing center;0.000370089807726355!GO:0008283;cell proliferation;0.000410741885970939!GO:0000087;M phase of mitotic cell cycle;0.000432718399480715!GO:0051348;negative regulation of transferase activity;0.000445285981098884!GO:0060090;molecular adaptor activity;0.000488737860258929!GO:0022403;cell cycle phase;0.000507344641039648!GO:0030133;transport vesicle;0.000554207844907114!GO:0016301;kinase activity;0.000554207844907114!GO:0043623;cellular protein complex assembly;0.000554207844907114!GO:0009141;nucleoside triphosphate metabolic process;0.00057701943737849!GO:0042110;T cell activation;0.000583445870244353!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.000591891075922567!GO:0046034;ATP metabolic process;0.000592821994940955!GO:0009199;ribonucleoside triphosphate metabolic process;0.000604858054152167!GO:0007067;mitosis;0.000611686887280518!GO:0006607;NLS-bearing substrate import into nucleus;0.000671144480266864!GO:0009205;purine ribonucleoside triphosphate metabolic process;0.000701715477564275!GO:0009144;purine nucleoside triphosphate metabolic process;0.000701715477564275!GO:0030097;hemopoiesis;0.000730942088342322!GO:0051301;cell division;0.000747548413791918!GO:0015630;microtubule cytoskeleton;0.000747548413791918!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.00075849958409682!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000758676042586616!GO:0006417;regulation of translation;0.000786649419489279!GO:0045321;leukocyte activation;0.000789808445788417!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000824124924327463!GO:0005791;rough endoplasmic reticulum;0.000882083573530087!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000901512247304435!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000918922602929299!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00102530124661659!GO:0051789;response to protein stimulus;0.00110088466364997!GO:0006986;response to unfolded protein;0.00110088466364997!GO:0030041;actin filament polymerization;0.00111832913732038!GO:0005070;SH3/SH2 adaptor activity;0.00115439031632118!GO:0030118;clathrin coat;0.00116643911345593!GO:0035258;steroid hormone receptor binding;0.00118568876858983!GO:0005769;early endosome;0.00119619915788597!GO:0016363;nuclear matrix;0.0012828139816982!GO:0030658;transport vesicle membrane;0.00132328838393273!GO:0016773;phosphotransferase activity, alcohol group as acceptor;0.00141002432180617!GO:0002520;immune system development;0.001486120290349!GO:0032940;secretion by cell;0.00177037601141128!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00179084554046421!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00179084554046421!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00179084554046421!GO:0007266;Rho protein signal transduction;0.00186983402207036!GO:0002768;immune response-regulating cell surface receptor signaling pathway;0.00202120113471061!GO:0051251;positive regulation of lymphocyte activation;0.00202717525098923!GO:0016787;hydrolase activity;0.00205823298687263!GO:0015980;energy derivation by oxidation of organic compounds;0.00221797153960335!GO:0003729;mRNA binding;0.00224415492268641!GO:0016072;rRNA metabolic process;0.00226131978746024!GO:0016740;transferase activity;0.00226332343318864!GO:0005099;Ras GTPase activator activity;0.00227618709987765!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00228384203967144!GO:0005788;endoplasmic reticulum lumen;0.00238583752639517!GO:0030867;rough endoplasmic reticulum membrane;0.00255891424941434!GO:0006364;rRNA processing;0.00260874088953356!GO:0051128;regulation of cellular component organization and biogenesis;0.00272918631164322!GO:0031325;positive regulation of cellular metabolic process;0.00273487692979358!GO:0031326;regulation of cellular biosynthetic process;0.00302211904432996!GO:0051056;regulation of small GTPase mediated signal transduction;0.00308525999443235!GO:0008186;RNA-dependent ATPase activity;0.00334795783508295!GO:0048534;hemopoietic or lymphoid organ development;0.00342399138474406!GO:0000786;nucleosome;0.00348578481821736!GO:0008361;regulation of cell size;0.00368119079084216!GO:0051287;NAD binding;0.00374322900430316!GO:0045045;secretory pathway;0.0038351262382761!GO:0051252;regulation of RNA metabolic process;0.0038519358219535!GO:0016049;cell growth;0.00388911945400225!GO:0000139;Golgi membrane;0.00416671170850049!GO:0022415;viral reproductive process;0.00429212281186926!GO:0002764;immune response-regulating signal transduction;0.00432785096319711!GO:0006350;transcription;0.00440730347326339!GO:0005048;signal sequence binding;0.00444164414242113!GO:0051920;peroxiredoxin activity;0.00445576140555899!GO:0005741;mitochondrial outer membrane;0.00452412836486436!GO:0046822;regulation of nucleocytoplasmic transport;0.00452554222801803!GO:0043021;ribonucleoprotein binding;0.00458835619389148!GO:0006399;tRNA metabolic process;0.00464811467166764!GO:0006892;post-Golgi vesicle-mediated transport;0.00476533936685342!GO:0006897;endocytosis;0.00476533936685342!GO:0010324;membrane invagination;0.00476533936685342!GO:0051188;cofactor biosynthetic process;0.00485187744367691!GO:0051235;maintenance of localization;0.0048725155958211!GO:0050851;antigen receptor-mediated signaling pathway;0.0048725155958211!GO:0008139;nuclear localization sequence binding;0.004978161313904!GO:0009117;nucleotide metabolic process;0.00502280783037296!GO:0010468;regulation of gene expression;0.00515916283691593!GO:0008234;cysteine-type peptidase activity;0.00520094811268752!GO:0016584;nucleosome positioning;0.00520094811268752!GO:0002429;immune response-activating cell surface receptor signaling pathway;0.00522536749473327!GO:0005905;coated pit;0.00541102826502996!GO:0009889;regulation of biosynthetic process;0.00542493956859688!GO:0005762;mitochondrial large ribosomal subunit;0.00550140836297989!GO:0000315;organellar large ribosomal subunit;0.00550140836297989!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00551076141864526!GO:0005057;receptor signaling protein activity;0.00552390744467745!GO:0030660;Golgi-associated vesicle membrane;0.00553162810681935!GO:0043087;regulation of GTPase activity;0.00554892294201656!GO:0046983;protein dimerization activity;0.00557021834147167!GO:0030518;steroid hormone receptor signaling pathway;0.00558155019284766!GO:0006261;DNA-dependent DNA replication;0.00579726055559265!GO:0005657;replication fork;0.0059168074348423!GO:0016779;nucleotidyltransferase activity;0.0061120222794602!GO:0050790;regulation of catalytic activity;0.00613033116248461!GO:0007005;mitochondrion organization and biogenesis;0.00630234742599577!GO:0019867;outer membrane;0.00635953828006552!GO:0004672;protein kinase activity;0.00682316205217334!GO:0006612;protein targeting to membrane;0.00702820760838018!GO:0001666;response to hypoxia;0.00702891983136151!GO:0031968;organelle outer membrane;0.00707131526849687!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00717034515638655!GO:0015399;primary active transmembrane transporter activity;0.00717034515638655!GO:0009108;coenzyme biosynthetic process;0.00749569544484437!GO:0046578;regulation of Ras protein signal transduction;0.00757485855558301!GO:0006891;intra-Golgi vesicle-mediated transport;0.00758195635235688!GO:0018193;peptidyl-amino acid modification;0.00760174624148912!GO:0002504;antigen processing and presentation of peptide or polysaccharide antigen via MHC class II;0.00765248621643495!GO:0043488;regulation of mRNA stability;0.00771204459072529!GO:0043487;regulation of RNA stability;0.00771204459072529!GO:0001516;prostaglandin biosynthetic process;0.00771204459072529!GO:0046457;prostanoid biosynthetic process;0.00771204459072529!GO:0008632;apoptotic program;0.00781517932384924!GO:0006611;protein export from nucleus;0.00782464824636494!GO:0002521;leukocyte differentiation;0.00784934815355437!GO:0007229;integrin-mediated signaling pathway;0.00822569217725448!GO:0051049;regulation of transport;0.00844183879071769!GO:0030127;COPII vesicle coat;0.00866030217771082!GO:0012507;ER to Golgi transport vesicle membrane;0.00866030217771082!GO:0004004;ATP-dependent RNA helicase activity;0.00870351720861647!GO:0042113;B cell activation;0.00876949439484795!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00882440585046655!GO:0030134;ER to Golgi transport vesicle;0.00885168551735901!GO:0003682;chromatin binding;0.00900826441273777!GO:0031902;late endosome membrane;0.00903334379585836!GO:0017166;vinculin binding;0.00938194779398324!GO:0051020;GTPase binding;0.00967204149070385!GO:0016791;phosphoric monoester hydrolase activity;0.00967204149070385!GO:0017091;AU-rich element binding;0.00967204149070385!GO:0050779;RNA destabilization;0.00967204149070385!GO:0000289;poly(A) tail shortening;0.00967204149070385!GO:0006959;humoral immune response;0.00967204149070385!GO:0045454;cell redox homeostasis;0.00974842440695943!GO:0008629;induction of apoptosis by intracellular signals;0.00983662133285634!GO:0002757;immune response-activating signal transduction;0.00995871320516332!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0104261800536185!GO:0030119;AP-type membrane coat adaptor complex;0.010940875983501!GO:0008250;oligosaccharyl transferase complex;0.0111231247869584!GO:0006955;immune response;0.0114153524262918!GO:0031072;heat shock protein binding;0.011417565460302!GO:0050870;positive regulation of T cell activation;0.0117427251789847!GO:0005085;guanyl-nucleotide exchange factor activity;0.0118149446069083!GO:0004576;oligosaccharyl transferase activity;0.0122798485906968!GO:0005637;nuclear inner membrane;0.0124838945751708!GO:0030521;androgen receptor signaling pathway;0.0125125236464769!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.0125640107887327!GO:0051338;regulation of transferase activity;0.0128533687325416!GO:0006752;group transfer coenzyme metabolic process;0.0129110305644241!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0129194395756117!GO:0030674;protein binding, bridging;0.0130560080283683!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.0131593581340248!GO:0001558;regulation of cell growth;0.013650659962257!GO:0030132;clathrin coat of coated pit;0.0136730933037624!GO:0000279;M phase;0.0136730933037624!GO:0030131;clathrin adaptor complex;0.0136901287134015!GO:0005100;Rho GTPase activator activity;0.0137210217245279!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0137707673957545!GO:0001775;cell activation;0.0145192909277127!GO:0008286;insulin receptor signaling pathway;0.0146653763857634!GO:0051059;NF-kappaB binding;0.0154882236426483!GO:0051223;regulation of protein transport;0.0155257351283315!GO:0051325;interphase;0.0155946977069732!GO:0043407;negative regulation of MAP kinase activity;0.0156818888761682!GO:0043492;ATPase activity, coupled to movement of substances;0.015905419578045!GO:0004860;protein kinase inhibitor activity;0.0160959152780535!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0160959152780535!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0164739843820119!GO:0033043;regulation of organelle organization and biogenesis;0.0164739843820119!GO:0005938;cell cortex;0.0166551862894332!GO:0030125;clathrin vesicle coat;0.0166919849780378!GO:0030665;clathrin coated vesicle membrane;0.0166919849780378!GO:0019210;kinase inhibitor activity;0.016808550459117!GO:0008287;protein serine/threonine phosphatase complex;0.0170415663932111!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0177387458774107!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0177387458774107!GO:0048500;signal recognition particle;0.0179785297046121!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0181926342000431!GO:0031267;small GTPase binding;0.018387756045123!GO:0016605;PML body;0.0187579515572505!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0189253728953657!GO:0006310;DNA recombination;0.0201626272703711!GO:0001772;immunological synapse;0.020319195528082!GO:0032508;DNA duplex unwinding;0.0203531648156233!GO:0032392;DNA geometric change;0.0203531648156233!GO:0006414;translational elongation;0.0206739735643139!GO:0033116;ER-Golgi intermediate compartment membrane;0.0206964282014293!GO:0043549;regulation of kinase activity;0.0213460255051352!GO:0016311;dephosphorylation;0.0214773521393513!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0216361236288912!GO:0051087;chaperone binding;0.0221595184620561!GO:0022890;inorganic cation transmembrane transporter activity;0.0222402366528938!GO:0051329;interphase of mitotic cell cycle;0.0222484476865928!GO:0007162;negative regulation of cell adhesion;0.0229430920510798!GO:0005912;adherens junction;0.0230398427928087!GO:0005862;muscle thin filament tropomyosin;0.0230497520995824!GO:0030522;intracellular receptor-mediated signaling pathway;0.0231223982337089!GO:0006693;prostaglandin metabolic process;0.0231480424263164!GO:0006692;prostanoid metabolic process;0.0231480424263164!GO:0031901;early endosome membrane;0.0234580221091737!GO:0043034;costamere;0.0237113403717722!GO:0016853;isomerase activity;0.0237113403717722!GO:0005684;U2-dependent spliceosome;0.0237113403717722!GO:0006979;response to oxidative stress;0.0242988654918944!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0243291792595602!GO:0003746;translation elongation factor activity;0.0243426448319012!GO:0005819;spindle;0.0244457236151309!GO:0030258;lipid modification;0.0250573949839171!GO:0002253;activation of immune response;0.0251347726737125!GO:0030833;regulation of actin filament polymerization;0.0252321718224745!GO:0015629;actin cytoskeleton;0.0258766861036884!GO:0016859;cis-trans isomerase activity;0.0259647995750749!GO:0003711;transcription elongation regulator activity;0.0261149055167847!GO:0004721;phosphoprotein phosphatase activity;0.0271785934966058!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0273659528986246!GO:0006338;chromatin remodeling;0.0274770914133793!GO:0004197;cysteine-type endopeptidase activity;0.0275129872804929!GO:0050681;androgen receptor binding;0.0275605479525388!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0275605479525388!GO:0051283;negative regulation of sequestering of calcium ion;0.0277743241846768!GO:0051282;regulation of sequestering of calcium ion;0.0277743241846768!GO:0051209;release of sequestered calcium ion into cytosol;0.0277743241846768!GO:0043681;protein import into mitochondrion;0.0277812697755404!GO:0050863;regulation of T cell activation;0.0278105601980236!GO:0030100;regulation of endocytosis;0.0278486201571589!GO:0043086;negative regulation of catalytic activity;0.0279535909246318!GO:0030155;regulation of cell adhesion;0.0287415269011744!GO:0000059;protein import into nucleus, docking;0.0289462382949247!GO:0002443;leukocyte mediated immunity;0.0290777198469391!GO:0048487;beta-tubulin binding;0.0293624717001401!GO:0006091;generation of precursor metabolites and energy;0.0294888047828944!GO:0019079;viral genome replication;0.0295543112055144!GO:0006302;double-strand break repair;0.0303819750040423!GO:0004715;non-membrane spanning protein tyrosine kinase activity;0.0303819750040423!GO:0050852;T cell receptor signaling pathway;0.0309339575137686!GO:0030217;T cell differentiation;0.0310544358782871!GO:0006672;ceramide metabolic process;0.0313187344413597!GO:0006376;mRNA splice site selection;0.0313187344413597!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0313187344413597!GO:0051101;regulation of DNA binding;0.0313187344413597!GO:0002250;adaptive immune response;0.0313700990088463!GO:0002460;adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains;0.0313700990088463!GO:0051249;regulation of lymphocyte activation;0.0314384231775339!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.0314384231775339!GO:0045603;positive regulation of endothelial cell differentiation;0.0317474302717112!GO:0000792;heterochromatin;0.0319921660904988!GO:0030663;COPI coated vesicle membrane;0.0326761978314225!GO:0030126;COPI vesicle coat;0.0326761978314225!GO:0016721;oxidoreductase activity, acting on superoxide radicals as acceptor;0.0326761978314225!GO:0004784;superoxide dismutase activity;0.0326761978314225!GO:0000118;histone deacetylase complex;0.0330621392119889!GO:0000303;response to superoxide;0.0335494783816196!GO:0030176;integral to endoplasmic reticulum membrane;0.0336387857127995!GO:0008147;structural constituent of bone;0.0336387857127995!GO:0031625;ubiquitin protein ligase binding;0.0336453097341195!GO:0051336;regulation of hydrolase activity;0.0336453097341195!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0338612915343602!GO:0045047;protein targeting to ER;0.0338612915343602!GO:0050865;regulation of cell activation;0.0348069467818687!GO:0006268;DNA unwinding during replication;0.0350377678192695!GO:0051052;regulation of DNA metabolic process;0.0352970894963623!GO:0006595;polyamine metabolic process;0.0352970894963623!GO:0045859;regulation of protein kinase activity;0.0355138288519145!GO:0051540;metal cluster binding;0.0355138288519145!GO:0051536;iron-sulfur cluster binding;0.0355138288519145!GO:0015631;tubulin binding;0.0360806609012984!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0364055375509099!GO:0005774;vacuolar membrane;0.0364613973364165!GO:0031124;mRNA 3'-end processing;0.0364769428873277!GO:0001725;stress fiber;0.0364769428873277!GO:0032432;actin filament bundle;0.0364769428873277!GO:0045730;respiratory burst;0.0368326666123728!GO:0051051;negative regulation of transport;0.0370795751668248!GO:0032774;RNA biosynthetic process;0.0375007576016596!GO:0042613;MHC class II protein complex;0.0376495433503305!GO:0004437;inositol or phosphatidylinositol phosphatase activity;0.0377746032692786!GO:0030137;COPI-coated vesicle;0.0379440593982193!GO:0003725;double-stranded RNA binding;0.0382670715210023!GO:0035035;histone acetyltransferase binding;0.0386781526014702!GO:0043621;protein self-association;0.0387550398066893!GO:0030433;ER-associated protein catabolic process;0.0394617310036778!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0394617310036778!GO:0005521;lamin binding;0.0395683594058851!GO:0006650;glycerophospholipid metabolic process;0.0401277266150474!GO:0006351;transcription, DNA-dependent;0.0403980537031552!GO:0017048;Rho GTPase binding;0.0404066614459443!GO:0032956;regulation of actin cytoskeleton organization and biogenesis;0.0404811896031862!GO:0032200;telomere organization and biogenesis;0.0405531277683248!GO:0000723;telomere maintenance;0.0405531277683248!GO:0008654;phospholipid biosynthetic process;0.0406611973702754!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0406867366794749!GO:0043022;ribosome binding;0.0411154545218947!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0411832019141911!GO:0030031;cell projection biogenesis;0.0412649085536881!GO:0004177;aminopeptidase activity;0.0416394786116715!GO:0006818;hydrogen transport;0.0419820038816562!GO:0005765;lysosomal membrane;0.0425657143842742!GO:0030832;regulation of actin filament length;0.0427213510174798!GO:0019900;kinase binding;0.0428214526877225!GO:0047485;protein N-terminus binding;0.0432297374957276!GO:0030098;lymphocyte differentiation;0.0432320238332226!GO:0006405;RNA export from nucleus;0.0434426438439291!GO:0003684;damaged DNA binding;0.0434426438439291!GO:0046519;sphingoid metabolic process;0.0435605209338603!GO:0015992;proton transport;0.0444531904204501!GO:0000314;organellar small ribosomal subunit;0.0446067836395431!GO:0005763;mitochondrial small ribosomal subunit;0.0446067836395431!GO:0007050;cell cycle arrest;0.0447837367524225!GO:0045098;type III intermediate filament;0.0449903729007798!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0455895932435469!GO:0040029;regulation of gene expression, epigenetic;0.0455895932435469!GO:0032594;protein transport within lipid bilayer;0.0455895932435469!GO:0032907;transforming growth factor-beta3 production;0.0455895932435469!GO:0032596;protein transport into lipid raft;0.0455895932435469!GO:0032910;regulation of transforming growth factor-beta3 production;0.0455895932435469!GO:0032595;B cell receptor transport within lipid bilayer;0.0455895932435469!GO:0033606;chemokine receptor transport within lipid bilayer;0.0455895932435469!GO:0032600;chemokine receptor transport out of lipid raft;0.0455895932435469!GO:0032599;protein transport out of lipid raft;0.0455895932435469!GO:0032597;B cell receptor transport into lipid raft;0.0455895932435469!GO:0032913;negative regulation of transforming growth factor-beta3 production;0.0455895932435469!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0455895932435469!GO:0045637;regulation of myeloid cell differentiation;0.0460142670483841!GO:0008022;protein C-terminus binding;0.0463655844807026!GO:0030140;trans-Golgi network transport vesicle;0.0475697818380499!GO:0046979;TAP2 binding;0.0476229667673917!GO:0046977;TAP binding;0.0476229667673917!GO:0046978;TAP1 binding;0.0476229667673917!GO:0008312;7S RNA binding;0.0476773650200468!GO:0030384;phosphoinositide metabolic process;0.0480789777467702!GO:0030099;myeloid cell differentiation;0.0484614754620746!GO:0005088;Ras guanyl-nucleotide exchange factor activity;0.0492682541172699!GO:0050811;GABA receptor binding;0.049636210801188
+|sample_id=10189
+|sample_note=
+|sample_sex=M
+|sample_species=Human (Homo sapiens)
+|sample_strain=
+|sample_tissue=
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+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10189-103D9;search_select_hide=table117:FF:10189-103D9
 }}

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FF:10189-103D9: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 12:26, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0