FF:10282-104F3: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00004804 | ||
|accession_numbers=CAGE;DRX008719;DRR009591;DRZ001016;DRZ002401;DRZ012366;DRZ013751 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0001134,UBERON:0001389,UBERON:0000479,UBERON:0000062,UBERON:0000026,UBERON:0000475,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0008784,UBERON:0001062,UBERON:0000480,UBERON:0006058,UBERON:0002036,UBERON:0002385,UBERON:0003663,UBERON:0004256,UBERON:0005090,UBERON:0001630,UBERON:0004708,UBERON:0002101,UBERON:0004709,UBERON:0002529,UBERON:0010538,UBERON:0003661,UBERON:0010890,UBERON:0002471,UBERON:0010317,UBERON:0001383,UBERON:0001015,UBERON:0010758,UBERON:0010707,UBERON:0002204,UBERON:0000978,UBERON:0002103,UBERON:0000383,UBERON:0001665,UBERON:0003823,UBERON:0000154,UBERON:0010709 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0011173 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score= | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
| Line 35: | Line 42: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/skeletal%2520muscle%2520-%2520soleus%2520muscle%252c%2520donor1.CNhs13454.10282-104F3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/skeletal%2520muscle%2520-%2520soleus%2520muscle%252c%2520donor1.CNhs13454.10282-104F3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/skeletal%2520muscle%2520-%2520soleus%2520muscle%252c%2520donor1.CNhs13454.10282-104F3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/skeletal%2520muscle%2520-%2520soleus%2520muscle%252c%2520donor1.CNhs13454.10282-104F3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/skeletal%2520muscle%2520-%2520soleus%2520muscle%252c%2520donor1.CNhs13454.10282-104F3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10282-104F3 | |id=FF:10282-104F3 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0011173 | ||
|is_obsolete= | |||
|library_id=CNhs13454 | |||
|library_id_phase_based=2:CNhs13454 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10282 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10282 | |||
|name=skeletal muscle - soleus muscle, donor1 | |name=skeletal muscle - soleus muscle, donor1 | ||
|namespace= | |namespace= | ||
| Line 42: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13454,LSID1024,release012,COMPLETED | |profile_hcage=CNhs13454,LSID1024,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,2.13659392430252,0,0.0564886336748916,0,0.995788272290476,0.733872796462183,0,0,0,0,0,0,0,0,0,0,0,0.216806663761278,0,0.535503596231618,0,0,0,0,0,-0.0979578962680575,0,0,0.740613259942914,0,0,0,0,0,0,0,0,0,0,0.216806663761278,0,0.665659617912355,0.216806663761278,0.216806663761278,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0,0,-0.0969923612426051,0,0,0.263412128825789,0,0,0,0,0,0,0,0,0.216806663761278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0925962845431129,0.288781209900082,0,0.0397757918135238,-0.0584468268118252,0.174735935177589,0.37144115874146,0,0.108403331880639,0.216806663761278,-0.0980353512377064,0.494880581359288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.390572888274622,0.216806663761278,0,0,0.65964492099123,0.9222316292748,0,0,0.191144864089442,0,0,0 | |||
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| |||
|rna_box=104 | |rna_box=104 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 79: | ||
|rna_weight_ug=18.53442 | |rna_weight_ug=18.53442 | ||
|sample_age= | |sample_age= | ||
|sample_category=tissues | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 92: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.95148364359152e-234!GO:0005737;cytoplasm;1.36696230645003e-190!GO:0043226;organelle;8.06738059550971e-180!GO:0043229;intracellular organelle;1.80532323638451e-179!GO:0043231;intracellular membrane-bound organelle;2.84512052773126e-162!GO:0043227;membrane-bound organelle;2.90268226157549e-162!GO:0044444;cytoplasmic part;3.70596743136966e-139!GO:0044422;organelle part;4.370248645168e-107!GO:0044446;intracellular organelle part;1.68682286718556e-106!GO:0032991;macromolecular complex;9.1330386241139e-96!GO:0005739;mitochondrion;1.00481277436075e-94!GO:0030529;ribonucleoprotein complex;3.80163473396857e-80!GO:0044237;cellular metabolic process;1.86532769023345e-78!GO:0044238;primary metabolic process;2.74172991246133e-76!GO:0005515;protein binding;1.16894877160572e-75!GO:0043233;organelle lumen;2.73299348437518e-73!GO:0031974;membrane-enclosed lumen;2.73299348437518e-73!GO:0043170;macromolecule metabolic process;3.27148761996458e-71!GO:0003723;RNA binding;9.15136778896849e-68!GO:0044429;mitochondrial part;1.2655949728167e-65!GO:0005634;nucleus;2.68055913883896e-62!GO:0044428;nuclear part;1.34107435413345e-58!GO:0005840;ribosome;4.49813544057594e-50!GO:0043234;protein complex;6.04459596405277e-49!GO:0031967;organelle envelope;7.90856882856901e-49!GO:0006412;translation;9.00434693133523e-49!GO:0031975;envelope;1.35712323833036e-48!GO:0019538;protein metabolic process;9.62905391624079e-48!GO:0006396;RNA processing;6.06449822991832e-44!GO:0010467;gene expression;7.64455902568777e-44!GO:0044260;cellular macromolecule metabolic process;1.18356093355558e-42!GO:0003735;structural constituent of ribosome;1.19960217665196e-42!GO:0005740;mitochondrial envelope;2.5500406963308e-41!GO:0044267;cellular protein metabolic process;4.79379570038492e-41!GO:0031966;mitochondrial membrane;2.11051648310653e-40!GO:0031981;nuclear lumen;2.53780582251291e-39!GO:0043283;biopolymer metabolic process;3.37007785622297e-39!GO:0019866;organelle inner membrane;4.74334538608716e-38!GO:0031090;organelle membrane;6.692910598239e-38!GO:0044249;cellular biosynthetic process;2.90317857892057e-37!GO:0016071;mRNA metabolic process;3.5761012484217e-37!GO:0005743;mitochondrial inner membrane;4.55083542421692e-37!GO:0016043;cellular component organization and biogenesis;3.39975730873716e-36!GO:0033279;ribosomal subunit;5.24684113131831e-36!GO:0008380;RNA splicing;1.15828588738199e-35!GO:0009059;macromolecule biosynthetic process;1.65515135112189e-32!GO:0022613;ribonucleoprotein complex biogenesis and assembly;5.29891132856005e-32!GO:0009058;biosynthetic process;5.36964126742989e-32!GO:0033036;macromolecule localization;6.67333733466355e-32!GO:0006397;mRNA processing;8.35290304221043e-32!GO:0005829;cytosol;1.55537715271644e-31!GO:0015031;protein transport;8.96011182799794e-31!GO:0031980;mitochondrial lumen;4.7112793857969e-30!GO:0005759;mitochondrial matrix;4.7112793857969e-30!GO:0043228;non-membrane-bound organelle;3.64997188615413e-29!GO:0043232;intracellular non-membrane-bound organelle;3.64997188615413e-29!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.39888915775012e-29!GO:0008104;protein localization;1.39835169170539e-28!GO:0045184;establishment of protein localization;1.83514035497999e-28!GO:0044455;mitochondrial membrane part;1.55830261119413e-26!GO:0046907;intracellular transport;3.64831753825612e-26!GO:0065003;macromolecular complex assembly;2.70558877239312e-25!GO:0022607;cellular component assembly;9.90050831398139e-25!GO:0005654;nucleoplasm;2.2096998939479e-24!GO:0006512;ubiquitin cycle;3.39674557293018e-24!GO:0006119;oxidative phosphorylation;3.53684157701968e-24!GO:0005681;spliceosome;6.84472659853854e-24!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.60158340228948e-23!GO:0006886;intracellular protein transport;4.9024694463138e-23!GO:0044451;nucleoplasm part;1.02503169166918e-22!GO:0005746;mitochondrial respiratory chain;4.71619846320046e-22!GO:0022618;protein-RNA complex assembly;6.40857931482998e-22!GO:0000166;nucleotide binding;1.827530986452e-21!GO:0003676;nucleic acid binding;2.84783588751706e-21!GO:0008135;translation factor activity, nucleic acid binding;1.85786303623562e-20!GO:0044445;cytosolic part;2.00687118512052e-20!GO:0006996;organelle organization and biogenesis;2.51878016231579e-20!GO:0016070;RNA metabolic process;5.55392561506299e-20!GO:0015935;small ribosomal subunit;8.10220762259541e-20!GO:0016874;ligase activity;6.4511302416634e-19!GO:0050136;NADH dehydrogenase (quinone) activity;1.8191959642631e-18!GO:0003954;NADH dehydrogenase activity;1.8191959642631e-18!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.8191959642631e-18!GO:0008134;transcription factor binding;2.98860530578395e-18!GO:0051603;proteolysis involved in cellular protein catabolic process;3.44428606661159e-18!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;4.05790668536733e-18!GO:0006511;ubiquitin-dependent protein catabolic process;4.11039354094472e-18!GO:0019941;modification-dependent protein catabolic process;5.95165829125258e-18!GO:0043632;modification-dependent macromolecule catabolic process;5.95165829125258e-18!GO:0044265;cellular macromolecule catabolic process;7.52929629655958e-18!GO:0044257;cellular protein catabolic process;1.18308929047531e-17!GO:0006457;protein folding;1.41076060624872e-17!GO:0015934;large ribosomal subunit;2.33337019657743e-17!GO:0005761;mitochondrial ribosome;4.369591356533e-17!GO:0000313;organellar ribosome;4.369591356533e-17!GO:0044248;cellular catabolic process;7.81168778725185e-17!GO:0042775;organelle ATP synthesis coupled electron transport;1.41557198431201e-16!GO:0042773;ATP synthesis coupled electron transport;1.41557198431201e-16!GO:0051186;cofactor metabolic process;1.75353964221896e-16!GO:0008092;cytoskeletal protein binding;2.47057180279039e-16!GO:0005730;nucleolus;4.25845239289717e-16!GO:0030964;NADH dehydrogenase complex (quinone);4.25845239289717e-16!GO:0045271;respiratory chain complex I;4.25845239289717e-16!GO:0005747;mitochondrial respiratory chain complex I;4.25845239289717e-16!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.23420821722799e-16!GO:0043285;biopolymer catabolic process;5.94983189322548e-16!GO:0006413;translational initiation;1.28069224571569e-15!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.62381003309722e-15!GO:0043687;post-translational protein modification;1.07046245765038e-14!GO:0051641;cellular localization;1.13859084733447e-14!GO:0051649;establishment of cellular localization;1.27866448017109e-14!GO:0009055;electron carrier activity;1.3244529283414e-14!GO:0043412;biopolymer modification;1.32891212949458e-14!GO:0003743;translation initiation factor activity;1.51769277936125e-14!GO:0009057;macromolecule catabolic process;1.59761203044838e-14!GO:0000502;proteasome complex (sensu Eukaryota);5.40070134302951e-14!GO:0016604;nuclear body;6.24362865512669e-14!GO:0006605;protein targeting;1.36031962969359e-13!GO:0030163;protein catabolic process;1.6132851846074e-13!GO:0006091;generation of precursor metabolites and energy;2.17435044086928e-13!GO:0017076;purine nucleotide binding;3.18965837336804e-13!GO:0006464;protein modification process;3.31435613014807e-13!GO:0051082;unfolded protein binding;3.81471164547889e-13!GO:0003712;transcription cofactor activity;4.52706854032966e-13!GO:0006446;regulation of translational initiation;6.08199325072369e-13!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;9.57820971266803e-13!GO:0016607;nuclear speck;9.88615326801834e-13!GO:0017111;nucleoside-triphosphatase activity;1.02549566419149e-12!GO:0016817;hydrolase activity, acting on acid anhydrides;1.16439542958488e-12!GO:0016462;pyrophosphatase activity;1.29237060431967e-12!GO:0006732;coenzyme metabolic process;2.50233398228914e-12!GO:0044449;contractile fiber part;4.92080183048381e-12!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);5.55571929102439e-12!GO:0043292;contractile fiber;6.43688639713748e-12!GO:0032553;ribonucleotide binding;7.36227463617883e-12!GO:0032555;purine ribonucleotide binding;7.36227463617883e-12!GO:0030554;adenyl nucleotide binding;1.08773821520799e-11!GO:0045333;cellular respiration;1.5980560734333e-11!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.2225424025192e-11!GO:0015629;actin cytoskeleton;3.22754939142343e-11!GO:0008565;protein transporter activity;3.74316562167956e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;3.78226822462965e-11!GO:0000375;RNA splicing, via transesterification reactions;3.78226822462965e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.78226822462965e-11!GO:0015980;energy derivation by oxidation of organic compounds;5.6871874160156e-11!GO:0008639;small protein conjugating enzyme activity;6.77440387567532e-11!GO:0042254;ribosome biogenesis and assembly;6.77440387567532e-11!GO:0048193;Golgi vesicle transport;1.04003245397325e-10!GO:0015078;hydrogen ion transmembrane transporter activity;1.05822279244388e-10!GO:0004842;ubiquitin-protein ligase activity;1.61501282472374e-10!GO:0030016;myofibril;1.61501282472374e-10!GO:0032559;adenyl ribonucleotide binding;1.91452164715838e-10!GO:0009056;catabolic process;1.96603400150615e-10!GO:0019787;small conjugating protein ligase activity;2.55311471231671e-10!GO:0016192;vesicle-mediated transport;2.82526874500333e-10!GO:0005524;ATP binding;2.97328963784281e-10!GO:0009060;aerobic respiration;3.2208789089383e-10!GO:0006461;protein complex assembly;7.51967555253736e-10!GO:0006913;nucleocytoplasmic transport;8.32297998156426e-10!GO:0048770;pigment granule;8.73191358450233e-10!GO:0042470;melanosome;8.73191358450233e-10!GO:0008307;structural constituent of muscle;1.09459866749524e-09!GO:0051169;nuclear transport;1.52124372907912e-09!GO:0031965;nuclear membrane;1.60834678865342e-09!GO:0006366;transcription from RNA polymerase II promoter;2.52157040312629e-09!GO:0030017;sarcomere;2.9435159191936e-09!GO:0005635;nuclear envelope;3.04811937297891e-09!GO:0003779;actin binding;3.50838902745973e-09!GO:0017038;protein import;4.69540965000166e-09!GO:0006259;DNA metabolic process;5.32696311335777e-09!GO:0016887;ATPase activity;6.49447237907256e-09!GO:0005794;Golgi apparatus;8.13321113231158e-09!GO:0016879;ligase activity, forming carbon-nitrogen bonds;9.31756819318838e-09!GO:0005783;endoplasmic reticulum;1.172482093138e-08!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.1867164134125e-08!GO:0051188;cofactor biosynthetic process;1.31851566979201e-08!GO:0006084;acetyl-CoA metabolic process;1.44966210101429e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;2.24548588832648e-08!GO:0042623;ATPase activity, coupled;2.54934460692509e-08!GO:0012505;endomembrane system;2.63896003254735e-08!GO:0006163;purine nucleotide metabolic process;2.84837576820698e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.1086946813455e-08!GO:0016564;transcription repressor activity;3.98561605018846e-08!GO:0019829;cation-transporting ATPase activity;4.83936580272936e-08!GO:0006099;tricarboxylic acid cycle;5.16592982164845e-08!GO:0046356;acetyl-CoA catabolic process;5.16592982164845e-08!GO:0016881;acid-amino acid ligase activity;8.15284288624449e-08!GO:0009109;coenzyme catabolic process;9.48461456575933e-08!GO:0048523;negative regulation of cellular process;1.12418034558743e-07!GO:0050789;regulation of biological process;1.26717518779207e-07!GO:0016469;proton-transporting two-sector ATPase complex;1.37042870060075e-07!GO:0003713;transcription coactivator activity;1.37628456008538e-07!GO:0045259;proton-transporting ATP synthase complex;1.43986660432294e-07!GO:0016529;sarcoplasmic reticulum;1.5025625590332e-07!GO:0016528;sarcoplasm;1.5025625590332e-07!GO:0050794;regulation of cellular process;1.55058885596943e-07!GO:0009150;purine ribonucleotide metabolic process;1.72856975449846e-07!GO:0044453;nuclear membrane part;1.76337893503396e-07!GO:0051187;cofactor catabolic process;1.77847563689028e-07!GO:0016491;oxidoreductase activity;1.78369695432572e-07!GO:0006793;phosphorus metabolic process;2.5354684561014e-07!GO:0006796;phosphate metabolic process;2.5354684561014e-07!GO:0007517;muscle development;2.56719588128406e-07!GO:0005643;nuclear pore;2.79001821176651e-07!GO:0006364;rRNA processing;2.9101723664966e-07!GO:0009259;ribonucleotide metabolic process;3.40673018401009e-07!GO:0015986;ATP synthesis coupled proton transport;3.58826115600938e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;3.58826115600938e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.48033377821412e-07!GO:0004812;aminoacyl-tRNA ligase activity;4.48033377821412e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.48033377821412e-07!GO:0051246;regulation of protein metabolic process;4.72511661271466e-07!GO:0006164;purine nucleotide biosynthetic process;4.87602074082173e-07!GO:0005768;endosome;5.25699295206596e-07!GO:0046034;ATP metabolic process;5.58944140538903e-07!GO:0003714;transcription corepressor activity;5.62001139734461e-07!GO:0030532;small nuclear ribonucleoprotein complex;5.94770670683522e-07!GO:0016072;rRNA metabolic process;6.87695478031679e-07!GO:0006399;tRNA metabolic process;6.99211472600592e-07!GO:0008026;ATP-dependent helicase activity;8.76560636399199e-07!GO:0009108;coenzyme biosynthetic process;8.76560636399199e-07!GO:0032446;protein modification by small protein conjugation;9.17250636330013e-07!GO:0000314;organellar small ribosomal subunit;9.73917865156241e-07!GO:0005763;mitochondrial small ribosomal subunit;9.73917865156241e-07!GO:0051427;hormone receptor binding;9.8514241535664e-07!GO:0000151;ubiquitin ligase complex;1.35253113644051e-06!GO:0006403;RNA localization;1.37042416237098e-06!GO:0050657;nucleic acid transport;1.38184437139053e-06!GO:0051236;establishment of RNA localization;1.38184437139053e-06!GO:0050658;RNA transport;1.38184437139053e-06!GO:0043038;amino acid activation;1.41428208133439e-06!GO:0006418;tRNA aminoacylation for protein translation;1.41428208133439e-06!GO:0043039;tRNA aminoacylation;1.41428208133439e-06!GO:0030036;actin cytoskeleton organization and biogenesis;1.42961259342914e-06!GO:0030029;actin filament-based process;1.59290966639931e-06!GO:0003012;muscle system process;1.64566083862237e-06!GO:0006936;muscle contraction;1.64566083862237e-06!GO:0016568;chromatin modification;1.87436483383785e-06!GO:0009199;ribonucleoside triphosphate metabolic process;2.08822219158161e-06!GO:0016567;protein ubiquitination;2.13210314206712e-06!GO:0065002;intracellular protein transport across a membrane;2.27600837712083e-06!GO:0031324;negative regulation of cellular metabolic process;2.31574494163438e-06!GO:0035257;nuclear hormone receptor binding;2.3938172673487e-06!GO:0007005;mitochondrion organization and biogenesis;2.39391582029524e-06!GO:0004386;helicase activity;2.41267824259224e-06!GO:0009892;negative regulation of metabolic process;2.49073117431606e-06!GO:0009152;purine ribonucleotide biosynthetic process;2.80530627938412e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.01660829112677e-06!GO:0009144;purine nucleoside triphosphate metabolic process;3.01660829112677e-06!GO:0000245;spliceosome assembly;3.17303173962254e-06!GO:0051170;nuclear import;3.22012905520336e-06!GO:0006754;ATP biosynthetic process;3.5253568012186e-06!GO:0006753;nucleoside phosphate metabolic process;3.5253568012186e-06!GO:0006606;protein import into nucleus;3.56407680252172e-06!GO:0048519;negative regulation of biological process;3.98669432018959e-06!GO:0009260;ribonucleotide biosynthetic process;4.27279390169347e-06!GO:0009141;nucleoside triphosphate metabolic process;4.31010486163244e-06!GO:0005762;mitochondrial large ribosomal subunit;5.38059196129845e-06!GO:0000315;organellar large ribosomal subunit;5.38059196129845e-06!GO:0016310;phosphorylation;6.98837434590097e-06!GO:0006888;ER to Golgi vesicle-mediated transport;7.02532904296783e-06!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;7.59565843339164e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;8.90505781000659e-06!GO:0031252;leading edge;1.31057406455079e-05!GO:0012501;programmed cell death;1.39519118569469e-05!GO:0019222;regulation of metabolic process;1.40051476137219e-05!GO:0005741;mitochondrial outer membrane;1.46219546136019e-05!GO:0016563;transcription activator activity;1.52374358346027e-05!GO:0005667;transcription factor complex;1.5325431165019e-05!GO:0044432;endoplasmic reticulum part;1.53383380091328e-05!GO:0009142;nucleoside triphosphate biosynthetic process;1.589785903422e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.589785903422e-05!GO:0019899;enzyme binding;1.62490728893894e-05!GO:0046930;pore complex;1.68788206095367e-05!GO:0016481;negative regulation of transcription;1.76082178573703e-05!GO:0006915;apoptosis;1.92347354885443e-05!GO:0043566;structure-specific DNA binding;1.94294347423219e-05!GO:0051028;mRNA transport;1.95979436561528e-05!GO:0006118;electron transport;2.14757939128657e-05!GO:0048471;perinuclear region of cytoplasm;2.15960446632882e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.24904356250221e-05!GO:0006974;response to DNA damage stimulus;2.27953305725328e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.28463611754578e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.28463611754578e-05!GO:0050662;coenzyme binding;2.61846873677114e-05!GO:0006941;striated muscle contraction;2.6859142714138e-05!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;2.79429377408611e-05!GO:0006357;regulation of transcription from RNA polymerase II promoter;2.79746958311648e-05!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;3.74148884528028e-05!GO:0015002;heme-copper terminal oxidase activity;3.74148884528028e-05!GO:0016675;oxidoreductase activity, acting on heme group of donors;3.74148884528028e-05!GO:0004129;cytochrome-c oxidase activity;3.74148884528028e-05!GO:0005852;eukaryotic translation initiation factor 3 complex;4.07000621545957e-05!GO:0031674;I band;4.2586360143022e-05!GO:0043623;cellular protein complex assembly;4.34192500362445e-05!GO:0006325;establishment and/or maintenance of chromatin architecture;4.60297344065588e-05!GO:0031968;organelle outer membrane;5.27577773976286e-05!GO:0003697;single-stranded DNA binding;5.73091833433421e-05!GO:0006402;mRNA catabolic process;5.88883272809029e-05!GO:0009117;nucleotide metabolic process;5.93251239980637e-05!GO:0014706;striated muscle development;6.2449501985907e-05!GO:0003724;RNA helicase activity;6.64107463955206e-05!GO:0019867;outer membrane;6.65547966556395e-05!GO:0008219;cell death;6.94017328945859e-05!GO:0016265;death;6.94017328945859e-05!GO:0030120;vesicle coat;7.66654571230534e-05!GO:0030662;coated vesicle membrane;7.66654571230534e-05!GO:0005839;proteasome core complex (sensu Eukaryota);7.94090523439549e-05!GO:0007519;skeletal muscle development;8.3669957392206e-05!GO:0022890;inorganic cation transmembrane transporter activity;8.5975052270347e-05!GO:0051540;metal cluster binding;9.24027992305145e-05!GO:0051536;iron-sulfur cluster binding;9.24027992305145e-05!GO:0005753;mitochondrial proton-transporting ATP synthase complex;9.27574964764333e-05!GO:0045786;negative regulation of progression through cell cycle;9.70540107851824e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.000102306792827299!GO:0006323;DNA packaging;0.000111934859051981!GO:0051087;chaperone binding;0.000120197145948467!GO:0048475;coated membrane;0.000135446361942253!GO:0030117;membrane coat;0.000135446361942253!GO:0005523;tropomyosin binding;0.000136667694738028!GO:0051128;regulation of cellular component organization and biogenesis;0.000138826892550679!GO:0005770;late endosome;0.000139834349946652!GO:0003746;translation elongation factor activity;0.000149462324690743!GO:0005856;cytoskeleton;0.000151130531087972!GO:0065007;biological regulation;0.000169148002359789!GO:0035258;steroid hormone receptor binding;0.000180294578191307!GO:0016779;nucleotidyltransferase activity;0.000182577980461726!GO:0051287;NAD binding;0.000187849747933492!GO:0005798;Golgi-associated vesicle;0.000197480610761881!GO:0006635;fatty acid beta-oxidation;0.000200254965348043!GO:0005793;ER-Golgi intermediate compartment;0.000201162321897726!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.000207228970510078!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000214676007592633!GO:0006414;translational elongation;0.000224500602053977!GO:0015992;proton transport;0.000241052919694215!GO:0007010;cytoskeleton organization and biogenesis;0.000260379094788402!GO:0016197;endosome transport;0.000276902291219548!GO:0019843;rRNA binding;0.000296287305021412!GO:0044440;endosomal part;0.000299504426357771!GO:0010008;endosome membrane;0.000299504426357771!GO:0030518;steroid hormone receptor signaling pathway;0.000305548565717254!GO:0031072;heat shock protein binding;0.000311388842640452!GO:0006818;hydrogen transport;0.000312354371427984!GO:0043021;ribonucleoprotein binding;0.000319443876087053!GO:0004298;threonine endopeptidase activity;0.000356050809579894!GO:0045892;negative regulation of transcription, DNA-dependent;0.00040179994103277!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.000429536134633476!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.000429536134633476!GO:0016044;membrane organization and biogenesis;0.000438714120023834!GO:0006752;group transfer coenzyme metabolic process;0.000448866220038891!GO:0043284;biopolymer biosynthetic process;0.000475951396868937!GO:0009719;response to endogenous stimulus;0.00049406537474362!GO:0005788;endoplasmic reticulum lumen;0.000504582492967715!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000533060732961128!GO:0015399;primary active transmembrane transporter activity;0.000533060732961128!GO:0005813;centrosome;0.000533060732961128!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00055599294883902!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.000576847525737407!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.000576847525737407!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.000576847525737407!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000593317269752712!GO:0019783;small conjugating protein-specific protease activity;0.000612058781461453!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000681456058181609!GO:0005769;early endosome;0.000685297003285981!GO:0016859;cis-trans isomerase activity;0.000686957914047363!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000729645641323252!GO:0051539;4 iron, 4 sulfur cluster binding;0.00073288182376269!GO:0003899;DNA-directed RNA polymerase activity;0.000739078204917736!GO:0004843;ubiquitin-specific protease activity;0.000801283248915058!GO:0030521;androgen receptor signaling pathway;0.000827714784844292!GO:0006839;mitochondrial transport;0.000856685936177014!GO:0005865;striated muscle thin filament;0.000981423902105368!GO:0031323;regulation of cellular metabolic process;0.000986156333894816!GO:0051789;response to protein stimulus;0.000987883429712875!GO:0006986;response to unfolded protein;0.000987883429712875!GO:0030133;transport vesicle;0.00100049518512975!GO:0006916;anti-apoptosis;0.00100198543981372!GO:0006613;cotranslational protein targeting to membrane;0.00106801928707816!GO:0006281;DNA repair;0.00114224869610853!GO:0006260;DNA replication;0.00116863312897435!GO:0042802;identical protein binding;0.00117553166375899!GO:0008186;RNA-dependent ATPase activity;0.00117553166375899!GO:0003924;GTPase activity;0.00130193483556373!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00133029702924957!GO:0008270;zinc ion binding;0.00134118336653564!GO:0043681;protein import into mitochondrion;0.0014108390625644!GO:0008361;regulation of cell size;0.00144574058487908!GO:0051168;nuclear export;0.00159543587532323!GO:0033017;sarcoplasmic reticulum membrane;0.00160005981091403!GO:0019752;carboxylic acid metabolic process;0.00160005981091403!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0016205405469866!GO:0004221;ubiquitin thiolesterase activity;0.00165461854447755!GO:0006082;organic acid metabolic process;0.00172772739381475!GO:0008286;insulin receptor signaling pathway;0.0017615013957204!GO:0006401;RNA catabolic process;0.00177789083820936!GO:0030018;Z disc;0.00181314997468737!GO:0042175;nuclear envelope-endoplasmic reticulum network;0.00181594055169225!GO:0001726;ruffle;0.00184765278388367!GO:0030132;clathrin coat of coated pit;0.00185572473877269!GO:0006350;transcription;0.00192145294533688!GO:0016853;isomerase activity;0.00192145294533688!GO:0009165;nucleotide biosynthetic process;0.00193893276635041!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00197691055914416!GO:0007265;Ras protein signal transduction;0.00207874819997987!GO:0005789;endoplasmic reticulum membrane;0.00208463501085177!GO:0043069;negative regulation of programmed cell death;0.00209308606977022!GO:0016049;cell growth;0.00216695260172225!GO:0044452;nucleolar part;0.0022275160329806!GO:0030880;RNA polymerase complex;0.0022631923786563!GO:0005815;microtubule organizing center;0.00231806984993959!GO:0016791;phosphoric monoester hydrolase activity;0.0023366617445124!GO:0019395;fatty acid oxidation;0.00245912434429037!GO:0048037;cofactor binding;0.00245912434429037!GO:0001558;regulation of cell growth;0.00246554511024113!GO:0031982;vesicle;0.0024907460406451!GO:0016272;prefoldin complex;0.00253464953844653!GO:0030522;intracellular receptor-mediated signaling pathway;0.00258808737110686!GO:0005790;smooth endoplasmic reticulum;0.00258808737110686!GO:0015631;tubulin binding;0.00258808737110686!GO:0045947;negative regulation of translational initiation;0.00261745963537356!GO:0043066;negative regulation of apoptosis;0.00262382430648739!GO:0051920;peroxiredoxin activity;0.00266130623310247!GO:0044431;Golgi apparatus part;0.00266671863084152!GO:0046914;transition metal ion binding;0.00267250083697525!GO:0031988;membrane-bound vesicle;0.00285487936033268!GO:0004674;protein serine/threonine kinase activity;0.00292567862190916!GO:0030027;lamellipodium;0.00305661396772739!GO:0004004;ATP-dependent RNA helicase activity;0.00311095304825592!GO:0010468;regulation of gene expression;0.00322099786096518!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00327014805105988!GO:0051289;protein homotetramerization;0.00338961821121802!GO:0008139;nuclear localization sequence binding;0.00342924146362415!GO:0006626;protein targeting to mitochondrion;0.00355893164782708!GO:0016023;cytoplasmic membrane-bound vesicle;0.00355893164782708!GO:0031410;cytoplasmic vesicle;0.00360287357390107!GO:0016740;transferase activity;0.00361182703023258!GO:0044262;cellular carbohydrate metabolic process;0.00370006742564566!GO:0008234;cysteine-type peptidase activity;0.00381610972698758!GO:0016790;thiolester hydrolase activity;0.00381610972698758!GO:0008180;signalosome;0.00397080311974988!GO:0043492;ATPase activity, coupled to movement of substances;0.00400390165383932!GO:0005977;glycogen metabolic process;0.00413022406186162!GO:0007006;mitochondrial membrane organization and biogenesis;0.00415325634309887!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00417071455268631!GO:0008017;microtubule binding;0.00420061181679427!GO:0051276;chromosome organization and biogenesis;0.00421806007376096!GO:0005048;signal sequence binding;0.00471379506721399!GO:0005791;rough endoplasmic reticulum;0.00483210455529615!GO:0048500;signal recognition particle;0.00496950855744498!GO:0008287;protein serine/threonine phosphatase complex;0.00498261234514347!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00498261234514347!GO:0000428;DNA-directed RNA polymerase complex;0.00498261234514347!GO:0003729;mRNA binding;0.00511332355150369!GO:0003690;double-stranded DNA binding;0.00512104198764591!GO:0046314;phosphocreatine biosynthetic process;0.00515394818225887!GO:0006603;phosphocreatine metabolic process;0.00515394818225887!GO:0016787;hydrolase activity;0.0051854117557918!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.00525271259586692!GO:0050681;androgen receptor binding;0.00554205100734056!GO:0016363;nuclear matrix;0.0058043703076462!GO:0006607;NLS-bearing substrate import into nucleus;0.00589347173414982!GO:0045893;positive regulation of transcription, DNA-dependent;0.00604025638659715!GO:0048487;beta-tubulin binding;0.00607553996063564!GO:0000059;protein import into nucleus, docking;0.00615092572578403!GO:0048741;skeletal muscle fiber development;0.00624674040924869!GO:0048747;muscle fiber development;0.00624674040924869!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00639083472009741!GO:0007050;cell cycle arrest;0.00666126093546843!GO:0045454;cell redox homeostasis;0.00666308448914095!GO:0005525;GTP binding;0.00671730627908048!GO:0009081;branched chain family amino acid metabolic process;0.00697505030284423!GO:0015630;microtubule cytoskeleton;0.00700755909719838!GO:0040008;regulation of growth;0.007253525902679!GO:0003711;transcription elongation regulator activity;0.00747897063923463!GO:0042805;actinin binding;0.00773987045195985!GO:0007049;cell cycle;0.00789603348421768!GO:0008654;phospholipid biosynthetic process;0.00835590462964185!GO:0005905;coated pit;0.00852444330179472!GO:0000074;regulation of progression through cell cycle;0.00861561893397862!GO:0006979;response to oxidative stress;0.00901602460304853!GO:0042981;regulation of apoptosis;0.00914903370669965!GO:0007264;small GTPase mediated signal transduction;0.00923342297240593!GO:0051726;regulation of cell cycle;0.00956491836526309!GO:0006073;glucan metabolic process;0.00989322500718694!GO:0009083;branched chain family amino acid catabolic process;0.0106167607431001!GO:0004721;phosphoprotein phosphatase activity;0.011126235634454!GO:0043067;regulation of programmed cell death;0.0111926030892169!GO:0006351;transcription, DNA-dependent;0.0114415860793192!GO:0005869;dynactin complex;0.0115696723267542!GO:0032774;RNA biosynthetic process;0.0116533598204508!GO:0006006;glucose metabolic process;0.0116611235599293!GO:0015036;disulfide oxidoreductase activity;0.0118343666306405!GO:0006892;post-Golgi vesicle-mediated transport;0.0118343666306405!GO:0006352;transcription initiation;0.0120605266727186!GO:0006897;endocytosis;0.012440867063106!GO:0010324;membrane invagination;0.012440867063106!GO:0030867;rough endoplasmic reticulum membrane;0.0126534024660452!GO:0006733;oxidoreduction coenzyme metabolic process;0.0130052517717785!GO:0005862;muscle thin filament tropomyosin;0.0130137911504557!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0130205577900443!GO:0010257;NADH dehydrogenase complex assembly;0.0130205577900443!GO:0033108;mitochondrial respiratory chain complex assembly;0.0130205577900443!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0131707355355439!GO:0045941;positive regulation of transcription;0.0133219286998847!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0135909746678042!GO:0043488;regulation of mRNA stability;0.014030236322398!GO:0043487;regulation of RNA stability;0.014030236322398!GO:0051252;regulation of RNA metabolic process;0.014150457519596!GO:0019902;phosphatase binding;0.0143605389866822!GO:0005684;U2-dependent spliceosome;0.015043507501067!GO:0016251;general RNA polymerase II transcription factor activity;0.0151414926462286!GO:0031970;organelle envelope lumen;0.0155166559898403!GO:0006612;protein targeting to membrane;0.0156814786418869!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0157296961308277!GO:0045047;protein targeting to ER;0.0157296961308277!GO:0016405;CoA-ligase activity;0.0165094988963924!GO:0033018;sarcoplasmic reticulum lumen;0.0165743114877325!GO:0000209;protein polyubiquitination;0.0166466715742346!GO:0006354;RNA elongation;0.0167538684920489!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0178258098883293!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0178265152087206!GO:0006942;regulation of striated muscle contraction;0.0183661878847788!GO:0005758;mitochondrial intermembrane space;0.0183673415939836!GO:0008312;7S RNA binding;0.0184825968746593!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.0185108294351537!GO:0006631;fatty acid metabolic process;0.0186906812875758!GO:0007266;Rho protein signal transduction;0.0187299833854049!GO:0006891;intra-Golgi vesicle-mediated transport;0.0196900264287305!GO:0031902;late endosome membrane;0.0204330454453471!GO:0003702;RNA polymerase II transcription factor activity;0.0211559339185221!GO:0050811;GABA receptor binding;0.0214185831746591!GO:0001666;response to hypoxia;0.0216878086518454!GO:0030134;ER to Golgi transport vesicle;0.0219124507621369!GO:0005773;vacuole;0.0221397141840482!GO:0030663;COPI coated vesicle membrane;0.0222190755508951!GO:0030126;COPI vesicle coat;0.0222190755508951!GO:0000287;magnesium ion binding;0.0224462832128499!GO:0000159;protein phosphatase type 2A complex;0.0225914332939426!GO:0008320;protein transmembrane transporter activity;0.0226670157932158!GO:0006383;transcription from RNA polymerase III promoter;0.0227849358660388!GO:0032561;guanyl ribonucleotide binding;0.0227849358660388!GO:0019001;guanyl nucleotide binding;0.0227849358660388!GO:0004722;protein serine/threonine phosphatase activity;0.02314884292126!GO:0017166;vinculin binding;0.0232381825985274!GO:0030658;transport vesicle membrane;0.0236094800282323!GO:0006595;polyamine metabolic process;0.0237523264460203!GO:0045445;myoblast differentiation;0.0238059678946498!GO:0006338;chromatin remodeling;0.0247801627535491!GO:0006778;porphyrin metabolic process;0.0247801627535491!GO:0033013;tetrapyrrole metabolic process;0.0247801627535491!GO:0019208;phosphatase regulator activity;0.0249409506988567!GO:0007004;telomere maintenance via telomerase;0.0249593715673009!GO:0032787;monocarboxylic acid metabolic process;0.0253783790909505!GO:0006417;regulation of translation;0.0257046402388091!GO:0006007;glucose catabolic process;0.0259745978998436!GO:0031032;actomyosin structure organization and biogenesis;0.0262387479198034!GO:0016421;CoA carboxylase activity;0.026255707399353!GO:0051262;protein tetramerization;0.0264473190670702!GO:0030118;clathrin coat;0.02654648589699!GO:0003995;acyl-CoA dehydrogenase activity;0.0266568010389151!GO:0004300;enoyl-CoA hydratase activity;0.027982603843135!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.0281829440111668!GO:0016741;transferase activity, transferring one-carbon groups;0.0287572283450626!GO:0006779;porphyrin biosynthetic process;0.0289891420778838!GO:0033014;tetrapyrrole biosynthetic process;0.0289891420778838!GO:0006950;response to stress;0.0292772104664669!GO:0005885;Arp2/3 protein complex;0.0292833283323866!GO:0007030;Golgi organization and biogenesis;0.0294623028113197!GO:0045098;type III intermediate filament;0.0300464520185942!GO:0051129;negative regulation of cellular component organization and biogenesis;0.0304953249005565!GO:0051393;alpha-actinin binding;0.0307561783187199!GO:0043414;biopolymer methylation;0.030768500819678!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0310635234541713!GO:0033043;regulation of organelle organization and biogenesis;0.0310635234541713!GO:0031111;negative regulation of microtubule polymerization or depolymerization;0.0318090819641734!GO:0030911;TPR domain binding;0.0321993460481484!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.0321993460481484!GO:0006376;mRNA splice site selection;0.0321993460481484!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0321993460481484!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.0322044433498791!GO:0006405;RNA export from nucleus;0.0325969561479142!GO:0005777;peroxisome;0.0325969561479142!GO:0042579;microbody;0.0325969561479142!GO:0019318;hexose metabolic process;0.0330162874152889!GO:0031371;ubiquitin conjugating enzyme complex;0.0331072644891516!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0334921069827329!GO:0051370;ZASP binding;0.0340256023513942!GO:0051374;FATZ 1 binding;0.0340256023513942!GO:0008168;methyltransferase activity;0.0349881441409103!GO:0005669;transcription factor TFIID complex;0.0353198407148254!GO:0016885;ligase activity, forming carbon-carbon bonds;0.0353198407148254!GO:0019903;protein phosphatase binding;0.0358500003149256!GO:0046483;heterocycle metabolic process;0.0361460078969465!GO:0000118;histone deacetylase complex;0.0365163747054282!GO:0016311;dephosphorylation;0.0365163747054282!GO:0031326;regulation of cellular biosynthetic process;0.0367925775331705!GO:0046474;glycerophospholipid biosynthetic process;0.0376211898293375!GO:0008383;manganese superoxide dismutase activity;0.0381188611479859!GO:0001315;age-dependent response to reactive oxygen species;0.0381188611479859!GO:0019888;protein phosphatase regulator activity;0.0381188611479859!GO:0031901;early endosome membrane;0.0381586691635285!GO:0005859;muscle myosin complex;0.0388223914853767!GO:0031114;regulation of microtubule depolymerization;0.039795253043895!GO:0007026;negative regulation of microtubule depolymerization;0.039795253043895!GO:0000096;sulfur amino acid metabolic process;0.0398194678737095!GO:0009066;aspartate family amino acid metabolic process;0.0413484522541183!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0415655281548754!GO:0005083;small GTPase regulator activity;0.0420200234754664!GO:0035035;histone acetyltransferase binding;0.042204227003698!GO:0030374;ligand-dependent nuclear receptor transcription coactivator activity;0.0427296027059971!GO:0016788;hydrolase activity, acting on ester bonds;0.0427296027059971!GO:0030140;trans-Golgi network transport vesicle;0.0431420713357506!GO:0005996;monosaccharide metabolic process;0.0433902597267745!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0437249533057666!GO:0008601;protein phosphatase type 2A regulator activity;0.0437479900633939!GO:0001725;stress fiber;0.043955594898649!GO:0032432;actin filament bundle;0.043955594898649!GO:0030346;protein phosphatase 2B binding;0.0440599459907021!GO:0006096;glycolysis;0.0443012334802388!GO:0008022;protein C-terminus binding;0.0443740497779641!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0458981284704659!GO:0045449;regulation of transcription;0.0464321637840263!GO:0044438;microbody part;0.0465046437100012!GO:0044439;peroxisomal part;0.0465046437100012!GO:0031625;ubiquitin protein ligase binding;0.0465349016939403!GO:0006650;glycerophospholipid metabolic process;0.0483005173242417!GO:0014866;skeletal myofibril assembly;0.0483005173242417!GO:0030127;COPII vesicle coat;0.0487944056221224!GO:0012507;ER to Golgi transport vesicle membrane;0.0487944056221224!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0487944056221224!GO:0006743;ubiquinone metabolic process;0.0487944056221224!GO:0006744;ubiquinone biosynthetic process;0.0487944056221224!GO:0042375;quinone cofactor metabolic process;0.0487944056221224!GO:0045426;quinone cofactor biosynthetic process;0.0487944056221224!GO:0033673;negative regulation of kinase activity;0.0487944056221224!GO:0006469;negative regulation of protein kinase activity;0.0487944056221224!GO:0000303;response to superoxide;0.0493453537518334!GO:0000139;Golgi membrane;0.0495652564046503!GO:0065004;protein-DNA complex assembly;0.0497336748903495 | |||
|sample_id=10282 | |sample_id=10282 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 100: | ||
|sample_tissue=skeletal muscle - soleus muscle | |sample_tissue=skeletal muscle - soleus muscle | ||
|top_motifs=MEF2{A,B,C,D}:6.72309461687;NR1H4:5.16554909008;PDX1:4.19504708447;POU1F1:4.12793258191;ESRRA:3.87482280414;NKX2-2,8:3.83922942473;NR5A1,2:3.49318913746;AR:3.28909184501;FOXL1:3.26998738635;NFE2L1:3.20582558815;STAT5{A,B}:3.0635169373;IKZF2:3.05829334468;NR6A1:2.88137821578;ZBTB16:2.79100457146;NFIX:2.75592437805;HOX{A4,D4}:2.69447312042;HAND1,2:2.60848391419;MYOD1:2.53472211712;TGIF1:2.51183156249;EVI1:2.47747939076;POU6F1:2.27485747187;MAFB:2.24094636828;SOX5:2.23400057223;PAX4:2.12770821377;RXR{A,B,G}_{NR1H2,PPAR}dimers:2.11252291852;CUX2:2.11197746708;GLI1..3:2.11125077364;GATA4:2.10596065012;SPZ1:2.10123685398;RORA:2.07539693425;FOXQ1:2.06009075386;RXR{A,B,G}:1.95311005253;ALX1:1.85778544604;SMAD1..7,9:1.84946087821;UFEwm:1.81539186947;PPARG:1.7907801437;SRF:1.7848646922;FOXP3:1.77455407151;YY1:1.7079816636;CDX1,2,4:1.67280699477;BPTF:1.65053019785;NKX6-1,2:1.58504909508;NHLH1,2:1.50974670332;ZNF384:1.4676109626;PITX1..3:1.36357525735;FOXO1,3,4:1.30114807262;KLF4:1.26430601791;HOX{A6,A7,B6,B7}:1.25991435839;PAX6:1.21748070318;POU3F1..4:1.17487648574;FOX{F1,F2,J1}:1.16283858559;NR3C1:1.14946620519;ATF2:1.09412740614;HSF1,2:1.09150154065;NKX3-2:1.03911421548;MYBL2:0.957374960619;FOXM1:0.956376315959;HMGA1,2:0.95605294038;ESR1:0.955007151894;TLX2:0.901160146807;FOX{D1,D2}:0.899300506086;NKX2-1,4:0.897077811645;RREB1:0.853677265257;NFATC1..3:0.790162225322;LMO2:0.723041861729;HES1:0.709965577327;LHX3,4:0.690142231552;LEF1_TCF7_TCF7L1,2:0.683107650058;EN1,2:0.602041781923;TFAP4:0.578177591836;PBX1:0.510890517848;XBP1:0.478229037064;RFX2..5_RFXANK_RFXAP:0.469921900611;GCM1,2:0.43314167227;SNAI1..3:0.425122607491;TFAP2{A,C}:0.40542651214;ONECUT1,2:0.393641660286;TEAD1:0.314126495221;HNF4A_NR2F1,2:0.300515833206;HIC1:0.29585807631;TOPORS:0.246281070036;CEBPA,B_DDIT3:0.24503984875;MTF1:0.243466510658;GTF2A1,2:0.236363388611;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.214820016805;ZIC1..3:0.200082620533;IRF7:0.185257820075;MED-1{core}:0.17854716316;TFCP2:0.130809113227;PATZ1:0.125270663284;ZFP161:0.105717050931;GFI1B:0.10389552589;PAX1,9:0.0883186234481;REST:0.0516052122402;TBP:0.0376242477565;FOXN1:0.0126398332567;ZEB1:-0.0441065735712;NANOG:-0.0653500114884;DMAP1_NCOR{1,2}_SMARC:-0.0778254887775;TFAP2B:-0.0931551223816;PAX2:-0.106072737552;TLX1..3_NFIC{dimer}:-0.111635084049;ARID5B:-0.116126931618;RBPJ:-0.127991245557;TBX4,5:-0.133129661548;ATF4:-0.146078011328;MTE{core}:-0.155905946418;ATF5_CREB3:-0.157628434327;HMX1:-0.188132020884;TAL1_TCF{3,4,12}:-0.199655001024;SOX17:-0.214923073732;MYFfamily:-0.227819776696;ALX4:-0.269880953632;ATF6:-0.277654379577;FOSL2:-0.277677653503;IKZF1:-0.294886005085;NKX2-3_NKX2-5:-0.299441636188;GTF2I:-0.30484813725;FOXP1:-0.314668262613;bHLH_family:-0.317506315628;EP300:-0.317897871614;ZBTB6:-0.329902243069;NFE2:-0.338726135499;STAT2,4,6:-0.350904279123;AIRE:-0.356149502933;SOX{8,9,10}:-0.375279532445;TP53:-0.406008105277;PRDM1:-0.410932412135;JUN:-0.413511324971;NKX3-1:-0.41844377017;ZNF143:-0.437612192479;PAX3,7:-0.463353644861;MAZ:-0.470408450147;ZNF423:-0.480543236037;MZF1:-0.485859815122;SREBF1,2:-0.487993506781;HLF:-0.498745716946;T:-0.507415030956;ETS1,2:-0.510848047454;FOXA2:-0.530894310374;ZNF238:-0.542143145452;HOX{A5,B5}:-0.543637282231;BREu{core}:-0.570828410285;TEF:-0.575503861309;GZF1:-0.584530713019;NFKB1_REL_RELA:-0.59519560296;CRX:-0.612812309351;SPI1:-0.625107686578;NFIL3:-0.636614003586;FOS_FOS{B,L1}_JUN{B,D}:-0.653499890824;AHR_ARNT_ARNT2:-0.662772351757;HNF1A:-0.664996880375;IRF1,2:-0.66649574437;EGR1..3:-0.683086065235;NRF1:-0.713124420629;OCT4_SOX2{dimer}:-0.717385841299;RXRA_VDR{dimer}:-0.760546308585;NFE2L2:-0.79702501086;BACH2:-0.800875054919;ZNF148:-0.801343127355;NANOG{mouse}:-0.806483183487;FOXD3:-0.822641076987;CREB1:-0.888220946824;GATA6:-0.901562734492;SPIB:-0.906742966291;PAX5:-1.06533480789;E2F1..5:-1.101706289;CDC5L:-1.13651772803;ELF1,2,4:-1.15403877485;ELK1,4_GABP{A,B1}:-1.27352657711;RUNX1..3:-1.30999449854;SP1:-1.398010708;HOXA9_MEIS1:-1.44068575881;STAT1,3:-1.45499762087;RFX1:-1.46991818231;HIF1A:-1.48598344161;TFDP1:-1.52088367811;NFY{A,B,C}:-1.57539138932;EBF1:-1.61779724191;DBP:-1.62047546719;ADNP_IRX_SIX_ZHX:-1.68778481736;SOX2:-1.72327863193;MYB:-1.82686130891;GFI1:-1.89493386389;HBP1_HMGB_SSRP1_UBTF:-1.95636876485;FOX{I1,J2}:-2.08785350091;POU5F1:-2.27442089538;PRRX1,2:-2.29420665344;POU2F1..3:-2.6006646115;PAX8:-2.63572132906;XCPE1{core}:-2.85128690838;VSX1,2:-3.11944693642 | |top_motifs=MEF2{A,B,C,D}:6.72309461687;NR1H4:5.16554909008;PDX1:4.19504708447;POU1F1:4.12793258191;ESRRA:3.87482280414;NKX2-2,8:3.83922942473;NR5A1,2:3.49318913746;AR:3.28909184501;FOXL1:3.26998738635;NFE2L1:3.20582558815;STAT5{A,B}:3.0635169373;IKZF2:3.05829334468;NR6A1:2.88137821578;ZBTB16:2.79100457146;NFIX:2.75592437805;HOX{A4,D4}:2.69447312042;HAND1,2:2.60848391419;MYOD1:2.53472211712;TGIF1:2.51183156249;EVI1:2.47747939076;POU6F1:2.27485747187;MAFB:2.24094636828;SOX5:2.23400057223;PAX4:2.12770821377;RXR{A,B,G}_{NR1H2,PPAR}dimers:2.11252291852;CUX2:2.11197746708;GLI1..3:2.11125077364;GATA4:2.10596065012;SPZ1:2.10123685398;RORA:2.07539693425;FOXQ1:2.06009075386;RXR{A,B,G}:1.95311005253;ALX1:1.85778544604;SMAD1..7,9:1.84946087821;UFEwm:1.81539186947;PPARG:1.7907801437;SRF:1.7848646922;FOXP3:1.77455407151;YY1:1.7079816636;CDX1,2,4:1.67280699477;BPTF:1.65053019785;NKX6-1,2:1.58504909508;NHLH1,2:1.50974670332;ZNF384:1.4676109626;PITX1..3:1.36357525735;FOXO1,3,4:1.30114807262;KLF4:1.26430601791;HOX{A6,A7,B6,B7}:1.25991435839;PAX6:1.21748070318;POU3F1..4:1.17487648574;FOX{F1,F2,J1}:1.16283858559;NR3C1:1.14946620519;ATF2:1.09412740614;HSF1,2:1.09150154065;NKX3-2:1.03911421548;MYBL2:0.957374960619;FOXM1:0.956376315959;HMGA1,2:0.95605294038;ESR1:0.955007151894;TLX2:0.901160146807;FOX{D1,D2}:0.899300506086;NKX2-1,4:0.897077811645;RREB1:0.853677265257;NFATC1..3:0.790162225322;LMO2:0.723041861729;HES1:0.709965577327;LHX3,4:0.690142231552;LEF1_TCF7_TCF7L1,2:0.683107650058;EN1,2:0.602041781923;TFAP4:0.578177591836;PBX1:0.510890517848;XBP1:0.478229037064;RFX2..5_RFXANK_RFXAP:0.469921900611;GCM1,2:0.43314167227;SNAI1..3:0.425122607491;TFAP2{A,C}:0.40542651214;ONECUT1,2:0.393641660286;TEAD1:0.314126495221;HNF4A_NR2F1,2:0.300515833206;HIC1:0.29585807631;TOPORS:0.246281070036;CEBPA,B_DDIT3:0.24503984875;MTF1:0.243466510658;GTF2A1,2:0.236363388611;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.214820016805;ZIC1..3:0.200082620533;IRF7:0.185257820075;MED-1{core}:0.17854716316;TFCP2:0.130809113227;PATZ1:0.125270663284;ZFP161:0.105717050931;GFI1B:0.10389552589;PAX1,9:0.0883186234481;REST:0.0516052122402;TBP:0.0376242477565;FOXN1:0.0126398332567;ZEB1:-0.0441065735712;NANOG:-0.0653500114884;DMAP1_NCOR{1,2}_SMARC:-0.0778254887775;TFAP2B:-0.0931551223816;PAX2:-0.106072737552;TLX1..3_NFIC{dimer}:-0.111635084049;ARID5B:-0.116126931618;RBPJ:-0.127991245557;TBX4,5:-0.133129661548;ATF4:-0.146078011328;MTE{core}:-0.155905946418;ATF5_CREB3:-0.157628434327;HMX1:-0.188132020884;TAL1_TCF{3,4,12}:-0.199655001024;SOX17:-0.214923073732;MYFfamily:-0.227819776696;ALX4:-0.269880953632;ATF6:-0.277654379577;FOSL2:-0.277677653503;IKZF1:-0.294886005085;NKX2-3_NKX2-5:-0.299441636188;GTF2I:-0.30484813725;FOXP1:-0.314668262613;bHLH_family:-0.317506315628;EP300:-0.317897871614;ZBTB6:-0.329902243069;NFE2:-0.338726135499;STAT2,4,6:-0.350904279123;AIRE:-0.356149502933;SOX{8,9,10}:-0.375279532445;TP53:-0.406008105277;PRDM1:-0.410932412135;JUN:-0.413511324971;NKX3-1:-0.41844377017;ZNF143:-0.437612192479;PAX3,7:-0.463353644861;MAZ:-0.470408450147;ZNF423:-0.480543236037;MZF1:-0.485859815122;SREBF1,2:-0.487993506781;HLF:-0.498745716946;T:-0.507415030956;ETS1,2:-0.510848047454;FOXA2:-0.530894310374;ZNF238:-0.542143145452;HOX{A5,B5}:-0.543637282231;BREu{core}:-0.570828410285;TEF:-0.575503861309;GZF1:-0.584530713019;NFKB1_REL_RELA:-0.59519560296;CRX:-0.612812309351;SPI1:-0.625107686578;NFIL3:-0.636614003586;FOS_FOS{B,L1}_JUN{B,D}:-0.653499890824;AHR_ARNT_ARNT2:-0.662772351757;HNF1A:-0.664996880375;IRF1,2:-0.66649574437;EGR1..3:-0.683086065235;NRF1:-0.713124420629;OCT4_SOX2{dimer}:-0.717385841299;RXRA_VDR{dimer}:-0.760546308585;NFE2L2:-0.79702501086;BACH2:-0.800875054919;ZNF148:-0.801343127355;NANOG{mouse}:-0.806483183487;FOXD3:-0.822641076987;CREB1:-0.888220946824;GATA6:-0.901562734492;SPIB:-0.906742966291;PAX5:-1.06533480789;E2F1..5:-1.101706289;CDC5L:-1.13651772803;ELF1,2,4:-1.15403877485;ELK1,4_GABP{A,B1}:-1.27352657711;RUNX1..3:-1.30999449854;SP1:-1.398010708;HOXA9_MEIS1:-1.44068575881;STAT1,3:-1.45499762087;RFX1:-1.46991818231;HIF1A:-1.48598344161;TFDP1:-1.52088367811;NFY{A,B,C}:-1.57539138932;EBF1:-1.61779724191;DBP:-1.62047546719;ADNP_IRX_SIX_ZHX:-1.68778481736;SOX2:-1.72327863193;MYB:-1.82686130891;GFI1:-1.89493386389;HBP1_HMGB_SSRP1_UBTF:-1.95636876485;FOX{I1,J2}:-2.08785350091;POU5F1:-2.27442089538;PRRX1,2:-2.29420665344;POU2F1..3:-2.6006646115;PAX8:-2.63572132906;XCPE1{core}:-2.85128690838;VSX1,2:-3.11944693642 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10282-104F3;search_select_hide=table117:FF:10282-104F3 | |||
}} | }} | ||
Latest revision as of 13:57, 3 June 2020
| Name: | skeletal muscle - soleus muscle, donor1 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs13454 |
| Sample type: | tissues |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| FANTOM CAT: | 1, 2 |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13454
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13454
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.0131 |
| 10 | 10 | 0.198 |
| 100 | 100 | 0.737 |
| 101 | 101 | 0.0609 |
| 102 | 102 | 0.758 |
| 103 | 103 | 0.629 |
| 104 | 104 | 0.643 |
| 105 | 105 | 0.498 |
| 106 | 106 | 0.123 |
| 107 | 107 | 0.0879 |
| 108 | 108 | 0.0978 |
| 109 | 109 | 0.535 |
| 11 | 11 | 0.131 |
| 110 | 110 | 0.603 |
| 111 | 111 | 0.00694 |
| 112 | 112 | 0.198 |
| 113 | 113 | 0.493 |
| 114 | 114 | 0.0214 |
| 115 | 115 | 0.225 |
| 116 | 116 | 0.23 |
| 117 | 117 | 0.68 |
| 118 | 118 | 0.413 |
| 119 | 119 | 0.0255 |
| 12 | 12 | 0.851 |
| 120 | 120 | 0.477 |
| 121 | 121 | 0.5 |
| 122 | 122 | 0.0455 |
| 123 | 123 | 0.212 |
| 124 | 124 | 0.296 |
| 125 | 125 | 0.384 |
| 126 | 126 | 0.37 |
| 127 | 127 | 0.341 |
| 128 | 128 | 0.0286 |
| 129 | 129 | 0.84 |
| 13 | 13 | 0.16 |
| 130 | 130 | 0.156 |
| 131 | 131 | 0.386 |
| 132 | 132 | 0.589 |
| 133 | 133 | 0.013 |
| 134 | 134 | 0.93 |
| 135 | 135 | 0.362 |
| 136 | 136 | 0.0247 |
| 137 | 137 | 0.845 |
| 138 | 138 | 0.593 |
| 139 | 139 | 3.9637e-4 |
| 14 | 14 | 0.351 |
| 140 | 140 | 0.0116 |
| 141 | 141 | 0.176 |
| 142 | 142 | 0.998 |
| 143 | 143 | 0.245 |
| 144 | 144 | 0.466 |
| 145 | 145 | 0.869 |
| 146 | 146 | 0.918 |
| 147 | 147 | 0.00219 |
| 148 | 148 | 0.0748 |
| 149 | 149 | 0.146 |
| 15 | 15 | 0.319 |
| 150 | 150 | 0.752 |
| 151 | 151 | 0.0878 |
| 152 | 152 | 0.482 |
| 153 | 153 | 0.117 |
| 154 | 154 | 0.562 |
| 155 | 155 | 0.296 |
| 156 | 156 | 0.377 |
| 157 | 157 | 0.268 |
| 158 | 158 | 0.322 |
| 159 | 159 | 0.151 |
| 16 | 16 | 0.333 |
| 160 | 160 | 0.28 |
| 161 | 161 | 0.816 |
| 162 | 162 | 0.892 |
| 163 | 163 | 0.463 |
| 164 | 164 | 0.982 |
| 165 | 165 | 4.95676e-4 |
| 166 | 166 | 0.741 |
| 167 | 167 | 0.0972 |
| 168 | 168 | 0.638 |
| 169 | 169 | 0.0209 |
| 17 | 17 | 0.364 |
| 18 | 18 | 0.323 |
| 19 | 19 | 0.0721 |
| 2 | 2 | 0.634 |
| 20 | 20 | 0.57 |
| 21 | 21 | 0.145 |
| 22 | 22 | 0.262 |
| 23 | 23 | 0.264 |
| 24 | 24 | 0.313 |
| 25 | 25 | 0.53 |
| 26 | 26 | 0.939 |
| 27 | 27 | 0.71 |
| 28 | 28 | 0.992 |
| 29 | 29 | 0.735 |
| 3 | 3 | 0.204 |
| 30 | 30 | 0.864 |
| 31 | 31 | 0.404 |
| 32 | 32 | 0.716 |
| 33 | 33 | 0.586 |
| 34 | 34 | 0.841 |
| 35 | 35 | 0.0428 |
| 36 | 36 | 0.623 |
| 37 | 37 | 0.0923 |
| 38 | 38 | 0.502 |
| 39 | 39 | 0.223 |
| 4 | 4 | 0.766 |
| 40 | 40 | 0.357 |
| 41 | 41 | 0.603 |
| 42 | 42 | 0.871 |
| 43 | 43 | 0.338 |
| 44 | 44 | 0.00258 |
| 45 | 45 | 0.728 |
| 46 | 46 | 0.0955 |
| 47 | 47 | 0.562 |
| 48 | 48 | 0.935 |
| 49 | 49 | 0.152 |
| 5 | 5 | 0.442 |
| 50 | 50 | 0.647 |
| 51 | 51 | 0.688 |
| 52 | 52 | 0.282 |
| 53 | 53 | 0.787 |
| 54 | 54 | 0.522 |
| 55 | 55 | 0.822 |
| 56 | 56 | 0.84 |
| 57 | 57 | 0.243 |
| 58 | 58 | 0.227 |
| 59 | 59 | 0.926 |
| 6 | 6 | 0.418 |
| 60 | 60 | 0.113 |
| 61 | 61 | 0.718 |
| 62 | 62 | 0.0419 |
| 63 | 63 | 0.0773 |
| 64 | 64 | 0.705 |
| 65 | 65 | 0.19 |
| 66 | 66 | 0.0631 |
| 67 | 67 | 0.901 |
| 68 | 68 | 0.566 |
| 69 | 69 | 0.218 |
| 7 | 7 | 0.246 |
| 70 | 70 | 0.0527 |
| 71 | 71 | 0.443 |
| 72 | 72 | 0.414 |
| 73 | 73 | 0.72 |
| 74 | 74 | 0.801 |
| 75 | 75 | 0.295 |
| 76 | 76 | 0.702 |
| 77 | 77 | 0.179 |
| 78 | 78 | 0.0259 |
| 79 | 79 | 0.0164 |
| 8 | 8 | 0.105 |
| 80 | 80 | 0.137 |
| 81 | 81 | 0.43 |
| 82 | 82 | 0.111 |
| 83 | 83 | 0.562 |
| 84 | 84 | 0.192 |
| 85 | 85 | 0.00687 |
| 86 | 86 | 0.359 |
| 87 | 87 | 0.0303 |
| 88 | 88 | 0.736 |
| 89 | 89 | 0.239 |
| 9 | 9 | 0.529 |
| 90 | 90 | 0.268 |
| 91 | 91 | 0.162 |
| 92 | 92 | 0.0737 |
| 93 | 93 | 0.8 |
| 94 | 94 | 0.643 |
| 95 | 95 | 0.0585 |
| 96 | 96 | 0.095 |
| 97 | 97 | 0.541 |
| 98 | 98 | 0.0038 |
| 99 | 99 | 0.747 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13454
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0011173 human skeletal muscle - soleus muscle sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0001134 (skeletal muscle tissue)
0001389 (soleus muscle)
0000479 (tissue)
0000062 (organ)
0000026 (appendage)
0000475 (organism subdivision)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0008784 (lower limb segment)
0001062 (anatomical entity)
0000480 (anatomical group)
0006058 (multi-limb segment region)
0002036 (striated muscle tissue)
0002385 (muscle tissue)
0003663 (hindlimb muscle)
0004256 (hindlimb zeugopod muscle)
0005090 (muscle structure)
0001630 (muscle organ)
0004708 (paired limb/fin)
0002101 (limb)
0004709 (pelvic appendage)
0002529 (limb segment)
0010538 (paired limb/fin segment)
0003661 (limb muscle)
0010890 (pelvic complex muscle)
0002471 (zeugopod)
0010317 (germ layer / neural crest derived structure)
0001383 (muscle of leg)
0001015 (musculature)
0010758 (subdivision of organism along appendicular axis)
0010707 (appendage girdle complex)
0002204 (musculoskeletal system)
0000978 (leg)
0002103 (hindlimb)
0000383 (musculature of body)
0001665 (triceps surae)
0003823 (hindlimb zeugopod)
0000154 (posterior region of body)
0010709 (pelvic complex)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0011173 (human skeletal muscle - soleus muscle sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0003104 (mesenchyme)
UBERON:0010316 (germ layer / neural crest)
