FF:10410-106B5: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005690 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00005690 | ||
|HumanCAGEScanFiles=NCig10065;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/extraskeletal%2520myxoid%2520chondrosarcoma%2520cell%2520line%253aH-EMC-SS%252c%2520tech_rep1.NCig10065.10410-106B5.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/extraskeletal%2520myxoid%2520chondrosarcoma%2520cell%2520line%253aH-EMC-SS%252c%2520tech_rep1.NCig10065.10410-106B5.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/extraskeletal%2520myxoid%2520chondrosarcoma%2520cell%2520line%253aH-EMC-SS%252c%2520tech_rep1.NCig10065.10410-106B5.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/extraskeletal%2520myxoid%2520chondrosarcoma%2520cell%2520line%253aH-EMC-SS%252c%2520tech_rep1.NCig10065.10410-106B5.hg19.GCTATA.pairs.bed.gz!NCig10129;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/extraskeletal%2520myxoid%2520chondrosarcoma%2520cell%2520line%253aH-EMC-SS%252c%2520tech_rep2.NCig10129.10410-106B5.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/extraskeletal%2520myxoid%2520chondrosarcoma%2520cell%2520line%253aH-EMC-SS%252c%2520tech_rep2.NCig10129.10410-106B5.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/extraskeletal%2520myxoid%2520chondrosarcoma%2520cell%2520line%253aH-EMC-SS%252c%2520tech_rep2.NCig10129.10410-106B5.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/extraskeletal%2520myxoid%2520chondrosarcoma%2520cell%2520line%253aH-EMC-SS%252c%2520tech_rep2.NCig10129.10410-106B5.hg19.GCTATA.pairs.bed.gz | |||
|accession_numbers=CAGE;DRX007885;DRR008757;DRZ000182;DRZ001567;DRZ011532;DRZ012917 | |||
|accession_numbers_RNASeq=RNA-Seq;DRX057118;DRR062877;DRZ007953 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001474,UBERON:0002384,UBERON:0002418,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004765,UBERON:0004755,UBERON:0002204,UBERON:0001434 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0002320,CL:0002371,CL:0000499,CL:0000153,CL:0000667,CL:0000327,CL:0000447,CL:0000255,CL:0000138 | |||
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:201,DOID:0060100,DOID:1115,DOID:3371,DOID:4549,DOID:5861,DOID:6496 | |ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:0050687,DOID:201,DOID:0060100,DOID:1115,DOID:3371,DOID:4549,DOID:5861,DOID:6496 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100385,FF:0101574 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr1:197886461..197886558,+!p1@LHX9!2.96!921.31!LHX9;;chr7:15726296..15726315,-!p1@MEOX2!2.94!878.68!MEOX2;;chr7:15726243..15726293,-!p2@MEOX2!2.22!164.16!MEOX2;;chr1:197886772..197886790,+!p4@LHX9!2.19!153.65!LHX9;;chr21:38071430..38071456,+!p1@SIM2!2.07!116.85!SIM2;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.01!101.05!PEG3;;chr3:27763807..27763822,-!p1@EOMES!2.00!98.49!EOMES;;chr7:15726176..15726191,-!p3@MEOX2!1.98!93.46!MEOX2;;chr1:197886665..197886732,+!p3@LHX9!1.97!92.58!LHX9;;chr1:197886421..197886432,+!p2@LHX9!1.95!88.43!LHX9;;chr2:239148671..239148686,-!p1@HES6!1.94!297.51!HES6;;chr13:100634031..100634045,+!p1@ZIC2!1.93!84.55!ZIC2;;chrX:591524..591527,+!p1@SHOX!1.92!81.81!SHOX;;chr20:51589133..51589159,+!p2@TSHZ2!1.91!79.61!TSHZ2;;chr7:63505799..63505904,+!p1@ZNF727!1.87!73.87!ZNF727;;chr12:66218255..66218304,+!p3@HMGA2!1.84!175.36!HMGA2;;chr1:158985493..158985535,+!p4@IFI16!1.80!92.58!IFI16;;chr1:24645832..24645853,+!p1@GRHL3!1.80!62.22!GRHL3;;chr15:96874145..96874166,+!p7@NR2F2!1.79!113.41!NR2F2;;chr6:144329384..144329405,-!p1@PLAGL1!1.70!541.45!PLAGL1;;chr12:66218598..66218645,+!p2@HMGA2!1.69!211.81!HMGA2;;chr7:15726220..15726236,-!p4@MEOX2!1.65!43.42!MEOX2;;chr16:73093174..73093209,-!p3@ZFHX3!1.61!52.95!ZFHX3;;chr20:51589732..51589769,+!p3@TSHZ2!1.61!39.54!TSHZ2;;chr4:147560042..147560046,+!p1@POU4F2!1.58!37.07!POU4F2;;chr15:96874216..96874236,+!p13@NR2F2!1.57!55.34!NR2F2;;chr7:15726206..15726217,-!p6@MEOX2!1.54!33.54!MEOX2;;chr8:40755333..40755352,-!p1@ZMAT4!1.54!33.45!ZMAT4;;chr15:96874244..96874259,+!p5@NR2F2!1.53!77.75!NR2F2;;chr7:28448965..28448994,+!p2@CREB5!1.52!109.61!CREB5;;chr21:38071403..38071428,+!p2@SIM2!1.52!32.04!SIM2;;chr7:15726064..15726103,-!p8@MEOX2!1.51!31.42!MEOX2;;chr20:22564895..22564910,-!p1@FOXA2!1.50!30.80!FOXA2;;chr2:176994408..176994492,+!p1@HOXD8!1.46!27.89!HOXD8;;chr9:4300050..4300118,-!p1@GLIS3!1.45!169.80!GLIS3;;chr7:27196267..27196311,-!p1@HOXA7!1.44!26.74!HOXA7;;chr12:66218836..66218888,+!p1@HMGA2!1.43!233.61!HMGA2;;chr17:8027418..8027432,-!p1@HES7!1.42!25.59!HES7;;chr6:91006518..91006570,-!p1@BACH2!1.39!53.39!BACH2;;chr13:100634130..100634143,+!p3@ZIC2!1.39!23.56!ZIC2;;chr7:15725757..15725828,-!p5@MEOX2!1.36!21.98!MEOX2;;chr16:69599899..69599919,+!p2@NFAT5!1.35!237.67!NFAT5;;chr12:66218212..66218244,+!p5@HMGA2!1.35!30.98!HMGA2;;chr19:50432453..50432468,+!p1@ATF5!1.34!1117.76!ATF5;;chr21:38071462..38071474,+!p3@SIM2!1.34!20.83!SIM2;;chr1:158985553..158985574,+!p14@IFI16!1.34!20.65!IFI16;;chr8:55370487..55370503,+!p1@SOX17!1.33!20.56!SOX17;;chr6:152011654..152011682,+!p1@ESR1!1.33!20.21!ESR1;;chrX:47341928..47342010,-!p2@ZNF41!1.32!39.10!ZNF41;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.32!20.12!HOXC5;;chr15:96874012..96874042,+!p2@NR2F2!1.31!171.04!NR2F2;;chr10:35484053..35484076,+!p1@CREM!1.31!47.57!CREM;;chr7:28448995..28449011,+!p4@CREB5!1.31!26.83!CREB5;;chr17:41622925..41622976,-!p3@ETV4!1.29!27.45!ETV4;;chr15:96869114..96869160,+!p11@NR2F2!1.29!24.80!NR2F2;;chr2:101436564..101436647,+!p1@NPAS2!1.28!356.11!NPAS2;;chr17:70117153..70117174,+!p1@SOX9!1.27!177.39!SOX9;;chr12:66218183..66218209,+!p4@HMGA2!1.27!33.36!HMGA2;;chr13:100634004..100634025,+!p2@ZIC2!1.27!17.83!ZIC2;;chr15:96876966..96877017,+!p12@NR2F2!1.26!24.62!NR2F2;;chr11:64764435..64764449,-!p1@BATF2!1.26!23.39!BATF2;;chr20:51589107..51589120,+!p9@TSHZ2!1.26!17.03!TSHZ2;;chr6:32095523..32095564,-!p2@ATF6B!1.25!22.68!ATF6B;;chr12:24715376..24715432,-!p1@SOX5!1.25!21.27!SOX5;;chr1:158975744..158975769,+!p10@IFI16!1.25!16.86!IFI16;;chr7:15725992..15726043,-!p7@MEOX2!1.23!16.06!MEOX2;;chr13:100623375..100623425,-!p1@ZIC5!1.23!15.80!ZIC5;;chr15:96873984..96873999,+!p3@NR2F2!1.22!113.94!NR2F2;;chr6:144289132..144289134,-!p3@PLAGL1!1.22!36.45!PLAGL1;;chr20:51588873..51588953,+!p1@TSHZ2!1.22!20.48!TSHZ2;;chr15:96874063..96874074,+!p10@NR2F2!1.20!27.54!NR2F2;;chr22:19748231..19748317,+!p1@TBX1!1.20!15.00!TBX1;;chr9:3525727..3525828,-!p2@RFX3!1.19!37.07!RFX3;;chr15:96873921..96873946,+!p1@NR2F2!1.18!394.15!NR2F2;;chr12:66218904..66218913,+!p11@HMGA2!1.18!14.30!HMGA2;;chr12:80084018..80084035,-!p17@PAWR!1.18!14.12!PAWR;;chr1:158985686..158985719,+!p15@IFI16!1.18!14.03!IFI16;;chr19:45260775..45260838,+!p5@BCL3!1.17!17.83!BCL3;;chr13:100638100..100638115,+!p4@ZIC2!1.17!13.68!ZIC2;;chr7:19157248..19157268,-!p1@TWIST1!1.16!37.24!TWIST1;;chr15:96869255..96869291,+!p6@NR2F2!1.16!24.45!NR2F2;;chr16:52580953..52580992,-!p2@TOX3!1.16!13.50!TOX3;;chr5:124081979..124082021,-!p7@ZNF608!1.16!13.41!ZNF608;;chr1:197886803..197886812,+!p7@LHX9!1.15!12.97!LHX9;;chr9:14314522..14314556,-!p3@NFIB!1.14!30.18!NFIB;;chr17:41622765..41622821,-!p2@ETV4!1.14!19.33!ETV4;;chr14:21994337..21994442,-!p1@SALL2!1.13!34.68!SALL2;;chr5:124082322..124082364,-!p1@ZNF608!1.13!32.30!ZNF608;;chr4:206390..206444,+!p1@ZNF876P!1.13!22.33!ZNF876P;;chr7:137686763..137686784,-!p5@CREB3L2!1.13!21.62!CREB3L2;;chr3:141105705..141105770,+!p4@ZBTB38!1.13!15.09!ZBTB38;;chr1:244214577..244214593,+!p1@ZNF238!1.13!12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| |expression_enrichment_score=chr1:197886461..197886558,+!p1@LHX9!2.96!921.31!LHX9;;chr7:15726296..15726315,-!p1@MEOX2!2.94!878.68!MEOX2;;chr7:15726243..15726293,-!p2@MEOX2!2.22!164.16!MEOX2;;chr1:197886772..197886790,+!p4@LHX9!2.19!153.65!LHX9;;chr21:38071430..38071456,+!p1@SIM2!2.07!116.85!SIM2;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.01!101.05!PEG3;;chr3:27763807..27763822,-!p1@EOMES!2.00!98.49!EOMES;;chr7:15726176..15726191,-!p3@MEOX2!1.98!93.46!MEOX2;;chr1:197886665..197886732,+!p3@LHX9!1.97!92.58!LHX9;;chr1:197886421..197886432,+!p2@LHX9!1.95!88.43!LHX9;;chr2:239148671..239148686,-!p1@HES6!1.94!297.51!HES6;;chr13:100634031..100634045,+!p1@ZIC2!1.93!84.55!ZIC2;;chrX:591524..591527,+!p1@SHOX!1.92!81.81!SHOX;;chr20:51589133..51589159,+!p2@TSHZ2!1.91!79.61!TSHZ2;;chr7:63505799..63505904,+!p1@ZNF727!1.87!73.87!ZNF727;;chr12:66218255..66218304,+!p3@HMGA2!1.84!175.36!HMGA2;;chr1:158985493..158985535,+!p4@IFI16!1.80!92.58!IFI16;;chr1:24645832..24645853,+!p1@GRHL3!1.80!62.22!GRHL3;;chr15:96874145..96874166,+!p7@NR2F2!1.79!113.41!NR2F2;;chr6:144329384..144329405,-!p1@PLAGL1!1.70!541.45!PLAGL1;;chr12:66218598..66218645,+!p2@HMGA2!1.69!211.81!HMGA2;;chr7:15726220..15726236,-!p4@MEOX2!1.65!43.42!MEOX2;;chr16:73093174..73093209,-!p3@ZFHX3!1.61!52.95!ZFHX3;;chr20:51589732..51589769,+!p3@TSHZ2!1.61!39.54!TSHZ2;;chr4:147560042..147560046,+!p1@POU4F2!1.58!37.07!POU4F2;;chr15:96874216..96874236,+!p13@NR2F2!1.57!55.34!NR2F2;;chr7:15726206..15726217,-!p6@MEOX2!1.54!33.54!MEOX2;;chr8:40755333..40755352,-!p1@ZMAT4!1.54!33.45!ZMAT4;;chr15:96874244..96874259,+!p5@NR2F2!1.53!77.75!NR2F2;;chr7:28448965..28448994,+!p2@CREB5!1.52!109.61!CREB5;;chr21:38071403..38071428,+!p2@SIM2!1.52!32.04!SIM2;;chr7:15726064..15726103,-!p8@MEOX2!1.51!31.42!MEOX2;;chr20:22564895..22564910,-!p1@FOXA2!1.50!30.80!FOXA2;;chr2:176994408..176994492,+!p1@HOXD8!1.46!27.89!HOXD8;;chr9:4300050..4300118,-!p1@GLIS3!1.45!169.80!GLIS3;;chr7:27196267..27196311,-!p1@HOXA7!1.44!26.74!HOXA7;;chr12:66218836..66218888,+!p1@HMGA2!1.43!233.61!HMGA2;;chr17:8027418..8027432,-!p1@HES7!1.42!25.59!HES7;;chr6:91006518..91006570,-!p1@BACH2!1.39!53.39!BACH2;;chr13:100634130..100634143,+!p3@ZIC2!1.39!23.56!ZIC2;;chr7:15725757..15725828,-!p5@MEOX2!1.36!21.98!MEOX2;;chr16:69599899..69599919,+!p2@NFAT5!1.35!237.67!NFAT5;;chr12:66218212..66218244,+!p5@HMGA2!1.35!30.98!HMGA2;;chr19:50432453..50432468,+!p1@ATF5!1.34!1117.76!ATF5;;chr21:38071462..38071474,+!p3@SIM2!1.34!20.83!SIM2;;chr1:158985553..158985574,+!p14@IFI16!1.34!20.65!IFI16;;chr8:55370487..55370503,+!p1@SOX17!1.33!20.56!SOX17;;chr6:152011654..152011682,+!p1@ESR1!1.33!20.21!ESR1;;chrX:47341928..47342010,-!p2@ZNF41!1.32!39.10!ZNF41;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.32!20.12!HOXC5;;chr15:96874012..96874042,+!p2@NR2F2!1.31!171.04!NR2F2;;chr10:35484053..35484076,+!p1@CREM!1.31!47.57!CREM;;chr7:28448995..28449011,+!p4@CREB5!1.31!26.83!CREB5;;chr17:41622925..41622976,-!p3@ETV4!1.29!27.45!ETV4;;chr15:96869114..96869160,+!p11@NR2F2!1.29!24.80!NR2F2;;chr2:101436564..101436647,+!p1@NPAS2!1.28!356.11!NPAS2;;chr17:70117153..70117174,+!p1@SOX9!1.27!177.39!SOX9;;chr12:66218183..66218209,+!p4@HMGA2!1.27!33.36!HMGA2;;chr13:100634004..100634025,+!p2@ZIC2!1.27!17.83!ZIC2;;chr15:96876966..96877017,+!p12@NR2F2!1.26!24.62!NR2F2;;chr11:64764435..64764449,-!p1@BATF2!1.26!23.39!BATF2;;chr20:51589107..51589120,+!p9@TSHZ2!1.26!17.03!TSHZ2;;chr6:32095523..32095564,-!p2@ATF6B!1.25!22.68!ATF6B;;chr12:24715376..24715432,-!p1@SOX5!1.25!21.27!SOX5;;chr1:158975744..158975769,+!p10@IFI16!1.25!16.86!IFI16;;chr7:15725992..15726043,-!p7@MEOX2!1.23!16.06!MEOX2;;chr13:100623375..100623425,-!p1@ZIC5!1.23!15.80!ZIC5;;chr15:96873984..96873999,+!p3@NR2F2!1.22!113.94!NR2F2;;chr6:144289132..144289134,-!p3@PLAGL1!1.22!36.45!PLAGL1;;chr20:51588873..51588953,+!p1@TSHZ2!1.22!20.48!TSHZ2;;chr15:96874063..96874074,+!p10@NR2F2!1.20!27.54!NR2F2;;chr22:19748231..19748317,+!p1@TBX1!1.20!15.00!TBX1;;chr9:3525727..3525828,-!p2@RFX3!1.19!37.07!RFX3;;chr15:96873921..96873946,+!p1@NR2F2!1.18!394.15!NR2F2;;chr12:66218904..66218913,+!p11@HMGA2!1.18!14.30!HMGA2;;chr12:80084018..80084035,-!p17@PAWR!1.18!14.12!PAWR;;chr1:158985686..158985719,+!p15@IFI16!1.18!14.03!IFI16;;chr19:45260775..45260838,+!p5@BCL3!1.17!17.83!BCL3;;chr13:100638100..100638115,+!p4@ZIC2!1.17!13.68!ZIC2;;chr7:19157248..19157268,-!p1@TWIST1!1.16!37.24!TWIST1;;chr15:96869255..96869291,+!p6@NR2F2!1.16!24.45!NR2F2;;chr16:52580953..52580992,-!p2@TOX3!1.16!13.50!TOX3;;chr5:124081979..124082021,-!p7@ZNF608!1.16!13.41!ZNF608;;chr1:197886803..197886812,+!p7@LHX9!1.15!12.97!LHX9;;chr9:14314522..14314556,-!p3@NFIB!1.14!30.18!NFIB;;chr17:41622765..41622821,-!p2@ETV4!1.14!19.33!ETV4;;chr14:21994337..21994442,-!p1@SALL2!1.13!34.68!SALL2;;chr5:124082322..124082364,-!p1@ZNF608!1.13!32.30!ZNF608;;chr4:206390..206444,+!p1@ZNF876P!1.13!22.33!ZNF876P;;chr7:137686763..137686784,-!p5@CREB3L2!1.13!21.62!CREB3L2;;chr3:141105705..141105770,+!p4@ZBTB38!1.13!15.09!ZBTB38;;chr1:244214577..244214593,+!p1@ZNF238!1.13!12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:44144292..44144338,-!p1@ZNF32!0.31!11.39!ZNF32;;chr2:178128149..178128198,-!p2@NFE2L2!0.31!9.18!NFE2L2;;chr16:4366021..4366045,+!p@chr16:4366021..4366045,+!0.31!8.12!GLIS2;;chr19:20959098..20959117,+!p1@ZNF66P!0.31!6.97!ZNF66P;;chr7:21467674..21467727,+!p1@SP4!0.31!6.71!SP4;;chr5:76383017..76383068,-!p1@ZBED3!0.31!6.00!ZBED3;;chr12:3069037..3069119,+!p2@TEAD4!0.31!5.74!TEAD4;;chr1:23694794..23694863,-!p1@ZNF436!0.31!5.65!ZNF436;;chr18:74534479..74534551,+!p1@ZNF236!0.31!4.94!ZNF236;;chr9:73029219..73029289,-!p2@KLF9!0.31!4.85!KLF9;;chr12:133656995..133657049,+!p2@ZNF140!0.31!3.80!ZNF140;;chr17:42298339..42298361,-!p5@UBTF!0.31!3.35!UBTF;;chr19:59084922..59084947,-!p3@MZF1!0.31!3.35!MZF1;;chr20:48807091..48807123,+!p7@CEBPB!0.31!3.35!CEBPB;;chr6:26659967..26659982,-!p1@ZNF322P1,p1@ZNF322!0.31!3.09!ZNF322;;chr6:27356745..27356777,+!p1@ZNF391!0.31!2.21!ZNF391;;chr7:64023410..64023428,-!p2@ZNF680!0.31!2.12!ZNF680;;chr1:156470323..156470332,-!p4@MEF2D!0.31!2.03!MEF2D;;chr16:30569801..30569845,-!p4@ZNF764!0.31!1.68!ZNF764;;chr8:28243785..28243799,-!p6@ZNF395!0.31!1.41!ZNF395;;chr18:3447617..3447633,+!p20@TGIF1!0.31!1.24!TGIF1;;chr15:96869394..96869405,+!p25@NR2F2!0.31!1.06!NR2F2;;chr17:41623716..41623727,-!p12@ETV4!0.31!1.06!ETV4;;chr17:46806419..46806438,-!p4@HOXB13!0.31!1.06!HOXB13;;chr18:55102628..55102646,+!p2@ONECUT2!0.31!1.06!ONECUT2;;chr19:12595565..12595576,-!p3@ZNF709!0.31!1.06!ZNF709;;chr19:50434005..50434020,+!p10@ATF5!0.31!1.06!ATF5;;chr19:57791947..57791956,+!p7@ZNF460!0.31!1.06!ZNF460;;chr1:161736032..161736035,+!p6@ATF6!0.31!1.06!ATF6;;chr9:14083091..14083096,-!p12@NFIB!0.31!1.06!NFIB;;chrX:128657363..128657372,-!p3@SMARCA1!0.31!1.06!SMARCA1;;chr10:118897716..118897727,-!p7@VAX1!0.31!1.06!VAX1;;chr7:27170359..27170381,-!p1@HOXA4!0.31!1.06!HOXA4;;chr7:27205106..27205134,-!p2@HOXA9!0.31!1.06!HOXA9;;chr8:55370720..55370733,+!p2@SOX17!0.31!1.06!SOX17;;chr9:115819058..115819082,-!p2@ZFP37!0.31!1.06!ZFP37;;chr3:147110055..147110129,-!p1@ZIC4!0.31!1.06!ZIC4;;chr12:53845879..53845894,+!p1@PCBP2!0.30!1287.39!PCBP2;;chr2:178129414..178129517,-!p1@NFE2L2!0.30!70.78!NFE2L2;;chr16:67596417..67596497,+!p1@CTCF!0.30!61.51!CTCF;;chr18:3450161..3450183,+!p1@TGIF1!0.30!61.07!TGIF1;;chr17:16118835..16118867,-!p1@NCOR1!0.30!60.46!NCOR1;;chr4:144434584..144434709,+!p2@SMARCA5!0.30!42.45!SMARCA5;;chr6:28109608..28109693,+!p1@ZNF192!0.30!29.74!ZNF192;;chr5:138629349..138629386,+!p3@MATR3!0.30!28.95!MATR3;;chr2:148778652..148778672,+!p1@MBD5!0.30!21.71!MBD5;;chr16:3333443..3333545,+!p1@ZNF263!0.30!21.00!ZNF263;;chr7:77428149..77428220,+!p1@PHTF2!0.30!17.65!PHTF2;;chr19:53400852..53400962,-!p1@ZNF320!0.30!17.39!ZNF320;;chr19:12662240..12662310,-!p1@ZNF564,p1@ZNF709!0.30!13.41!ZNF564;;chr1:27022164..27022220,+!p2@ARID1A!0.30!12.89!ARID1A;;chr8:145980808..145980922,-!p1@ZNF251!0.30!12.62!ZNF251;;chr19:37825540..37825588,+!p2@HKR1!0.30!12.00!HKR1;;chr7:99070499..99070523,+!p1@ZNF789!0.30!8.83!ZNF789;;chr19:58459047..58459083,-!p1@ZNF256!0.30!8.21!ZNF256;;chr19:36706055..36706074,+!p3@ZNF146!0.30!7.77!ZNF146;;chr19:53073532..53073551,+!p1@ZNF701!0.30!7.41!ZNF701;;chr19:53360870..53360873,-!p1@ZNF468!0.30!5.91!ZNF468;;chrX:134478706..134478736,+!p1@ZNF449!0.30!5.21!ZNF449;;chr19:44645731..44645786,+!p2@ZNF226,p2@ZNF234!0.30!4.85!ZNF234;;chr12:122516626..122516645,+!p2@MLXIP!0.30!4.41!MLXIP;;chr18:3450293..3450304,+!p4@TGIF1!0.30!3.71!TGIF1;;chr15:66994561..66994597,+!p2@SMAD6!0.30!3.53!SMAD6;;chr19:56152332..56152347,+!p4@ZNF580!0.30!3.35!ZNF580;;chr20:48807171..48807234,+!p4@CEBPB!0.30!3.18!CEBPB;;chr20:48807456..48807475,+!p3@CEBPB!0.30!2.74!CEBPB;;chr1:151431811..151431832,-!p3@POGZ!0.30!2.21!POGZ;;chr12:51566592..51566617,-!p3@TFCP2!0.30!1.94!TFCP2;;chr1:158979680..158979683,+!p9@IFI16!0.30!1.68!IFI16;;chr1:244219775..244219893,+!p2@ZNF238!0.30!1.68!ZNF238;;chr19:18391615..18391637,-!p5@JUND!0.30!1.59!JUND;;chrX:152599653..152599662,+!p3@ZNF275!0.30!1.41!ZNF275;;chr8:28243649..28243660,-!p7@ZNF395!0.30!1.41!ZNF395;;chr20:46130846..46130869,+!p5@NCOA3!0.30!1.15!NCOA3;; | ||
|ffid_belonging_in_development=CL:0000134 | |||
|fonse_cell_line=FF:0100385 | |fonse_cell_line=FF:0100385 | ||
|fonse_cell_line_closure=FF:0100385 | |fonse_cell_line_closure=FF:0100385 | ||
| Line 35: | Line 44: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/extraskeletal%2520myxoid%2520chondrosarcoma%2520cell%2520line%253aH-EMC-SS.CNhs10728.10410-106B5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/extraskeletal%2520myxoid%2520chondrosarcoma%2520cell%2520line%253aH-EMC-SS.CNhs10728.10410-106B5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/extraskeletal%2520myxoid%2520chondrosarcoma%2520cell%2520line%253aH-EMC-SS.CNhs10728.10410-106B5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/extraskeletal%2520myxoid%2520chondrosarcoma%2520cell%2520line%253aH-EMC-SS.CNhs10728.10410-106B5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/extraskeletal%2520myxoid%2520chondrosarcoma%2520cell%2520line%253aH-EMC-SS.CNhs10728.10410-106B5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10410-106B5 | |id=FF:10410-106B5 | ||
|is_a=DOID:6496;;EFO:0002091;;FF: | |is_a=DOID:6496;;EFO:0002091;;FF:0000210;;FF:0101574 | ||
|is_obsolete= | |||
|library_id=CNhs10728 | |||
|library_id_phase_based=2:CNhs10728 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10410 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10410 | |||
|name=extraskeletal myxoid chondrosarcoma cell line:H-EMC-SS | |name=extraskeletal myxoid chondrosarcoma cell line:H-EMC-SS | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 63: | ||
|profile_cagescan=NCig10065,,, | |profile_cagescan=NCig10065,,, | ||
|profile_hcage=CNhs10728,LSID691,release008,COMPLETED | |profile_hcage=CNhs10728,LSID691,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,-0.160318030086386,0,-0.23810217736786,-0.264038000157827,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.174668601605013,0,0,0,0,0,0,0,0,0.0680649384223165,0,0,0,0,0,0,0,-0.0969923612426051,0,0,-0.0267471724975637,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0183655604191154,0,0,0,0,0,0,0,0,0.0365036418717111,0.232241801923107,-0.0385246158499044,0,0,0,0,0.0607131998023743,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.356807131483369,0.0367311208382308,0,0,-0.105092430609792,-0.303982825411563,0,0,0,0,0,0 | |||
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| |||
|rna_box=106 | |rna_box=106 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 56: | Line 80: | ||
|rna_tube_id=106B5 | |rna_tube_id=106B5 | ||
|rna_weight_ug=92.2235 | |rna_weight_ug=92.2235 | ||
|rnaseq_library_id=RDhi10061 | |||
|sample_age=77 | |sample_age=77 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB0508 | |sample_cell_catalog=RCB0508 | ||
|sample_cell_line=H-EMC-SS | |sample_cell_line=H-EMC-SS | ||
| Line 77: | Line 103: | ||
|sample_tissue=ANATOMICAL SYSTEM | |sample_tissue=ANATOMICAL SYSTEM | ||
|top_motifs=ONECUT1,2:2.80650326457;VSX1,2:2.03809659805;RORA:1.84989885395;NKX6-1,2:1.60990352387;SREBF1,2:1.58100135205;GATA4:1.51752165667;PAX4:1.48298420948;PAX8:1.37438939458;bHLH_family:1.35334578099;YY1:1.28959092358;EGR1..3:1.22660705012;ATF2:1.19517187566;HOX{A5,B5}:1.18577327131;SOX17:1.17747365904;AIRE:1.1724009245;CRX:1.12385765279;STAT1,3:1.10413157469;FOXN1:1.08509211841;FOXQ1:1.0189048147;NRF1:0.967927620957;TEF:0.937939067239;RREB1:0.935079061692;EVI1:0.92077056794;ATF4:0.902040241137;NANOG:0.899841882325;STAT5{A,B}:0.883450856431;TOPORS:0.876920324572;POU1F1:0.874302498575;ZNF143:0.85390929594;HIF1A:0.826099383512;NFIL3:0.810050084497;MZF1:0.806745354389;FOX{F1,F2,J1}:0.786269276416;LMO2:0.767987532211;CDX1,2,4:0.685018379215;RFX1:0.62734971104;JUN:0.571888973899;CUX2:0.571312239313;ADNP_IRX_SIX_ZHX:0.560832832364;ELK1,4_GABP{A,B1}:0.551716042906;HOX{A4,D4}:0.547705264644;TAL1_TCF{3,4,12}:0.546636043023;BREu{core}:0.540776599074;PATZ1:0.540332747701;HBP1_HMGB_SSRP1_UBTF:0.509795414911;MYB:0.485870125552;TLX2:0.480377500757;RFX2..5_RFXANK_RFXAP:0.4753743552;FOXD3:0.463764693731;ESR1:0.445404797094;GZF1:0.428862399102;AHR_ARNT_ARNT2:0.422042483316;ZNF384:0.417345974173;GATA6:0.41208894663;PRRX1,2:0.410149590092;NKX2-1,4:0.396920490296;SOX{8,9,10}:0.394326621353;TFAP2B:0.373491916358;FOXA2:0.370865235386;ZBTB6:0.367880002642;REST:0.352997874707;GTF2I:0.322031834104;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.3102354529;PAX1,9:0.302877896498;FOXP1:0.284516347135;GTF2A1,2:0.283203839373;RBPJ:0.259340868553;PITX1..3:0.23675044312;ZFP161:0.232819477682;GFI1:0.211192659662;SOX2:0.208940751739;ALX1:0.197094292868;MEF2{A,B,C,D}:0.191785804411;DMAP1_NCOR{1,2}_SMARC:0.184335925822;TFDP1:0.183391782254;NR5A1,2:0.182682947168;CEBPA,B_DDIT3:0.16629929968;ATF5_CREB3:0.152074204826;EP300:0.131963975723;CREB1:0.130353571668;FOX{D1,D2}:0.123541397607;LEF1_TCF7_TCF7L1,2:0.112575568123;HSF1,2:0.111786922473;SP1:0.103319002543;NR6A1:0.102176091445;PAX2:0.0744446618951;LHX3,4:0.0696794522246;HNF4A_NR2F1,2:0.0676492088504;HAND1,2:0.0552103053577;GFI1B:0.027884103909;FOXP3:0.0194682239709;HOXA9_MEIS1:0.00603684771303;MAZ:0.00330492352286;E2F1..5:-0.0121272727208;ATF6:-0.0150369276617;NKX2-2,8:-0.0327043423946;DBP:-0.0350327636125;TGIF1:-0.0527349363668;HLF:-0.0533448688157;TEAD1:-0.0855379162993;MED-1{core}:-0.0905989816386;PRDM1:-0.102612401693;ZBTB16:-0.103261089436;NFATC1..3:-0.123340982897;T:-0.131145432701;SOX5:-0.138462883795;ARID5B:-0.140557089069;SPZ1:-0.147921167578;TP53:-0.162564285399;NKX2-3_NKX2-5:-0.184712330797;NANOG{mouse}:-0.198491775071;NFY{A,B,C}:-0.200208536351;ZNF423:-0.216543136856;NKX3-2:-0.23041066355;ZNF148:-0.238305137998;FOS_FOS{B,L1}_JUN{B,D}:-0.240858323522;ELF1,2,4:-0.260398141372;MYOD1:-0.261680731267;IKZF1:-0.263371915387;NKX3-1:-0.27262303517;FOXM1:-0.273030591194;PPARG:-0.280853485164;OCT4_SOX2{dimer}:-0.283843588233;HNF1A:-0.319568924381;POU2F1..3:-0.321080244586;HMGA1,2:-0.332705960824;HIC1:-0.332830352791;TFAP4:-0.335402864872;SNAI1..3:-0.344047825589;TBX4,5:-0.347174107675;NR3C1:-0.361157110523;UFEwm:-0.362175804931;BACH2:-0.367577995918;MYBL2:-0.379954751684;EN1,2:-0.386775255307;SPI1:-0.391485622171;ZIC1..3:-0.411975620089;IKZF2:-0.41242750308;ZEB1:-0.41794950545;NFKB1_REL_RELA:-0.42313671439;MYFfamily:-0.440523439592;EBF1:-0.441446164998;SPIB:-0.467493365544;FOSL2:-0.482257984582;RUNX1..3:-0.491487415626;PAX5:-0.493418545585;MTF1:-0.51090545315;ZNF238:-0.524316436292;HMX1:-0.526036740274;KLF4:-0.536529022619;PAX3,7:-0.541961058427;NFE2:-0.559127000691;PBX1:-0.563894452679;IRF7:-0.57943999923;FOXL1:-0.596159061321;SRF:-0.630247760635;FOX{I1,J2}:-0.63059139382;CDC5L:-0.638083918803;BPTF:-0.644448228045;NR1H4:-0.700581967357;NHLH1,2:-0.706164447884;STAT2,4,6:-0.724806261529;ESRRA:-0.743240657305;TLX1..3_NFIC{dimer}:-0.7687107389;XCPE1{core}:-0.785243233115;GCM1,2:-0.793010266623;NFIX:-0.811658466452;POU6F1:-0.820010613508;TFCP2:-0.866164492062;XBP1:-0.881806711284;HOX{A6,A7,B6,B7}:-0.928587394076;TFAP2{A,C}:-0.935469686738;POU3F1..4:-0.939153456374;RXR{A,B,G}:-0.957742216546;ETS1,2:-0.967835541381;IRF1,2:-0.973372226602;MTE{core}:-0.989499021612;NFE2L2:-1.02234299004;AR:-1.03555222806;POU5F1:-1.03594277858;PAX6:-1.09464294228;FOXO1,3,4:-1.11582401486;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.16537604193;NFE2L1:-1.17517212606;ALX4:-1.20011151886;SMAD1..7,9:-1.33191905354;GLI1..3:-1.36891965131;PDX1:-1.41622340109;HES1:-1.42546211973;MAFB:-1.58491836973;TBP:-1.70612212965;RXRA_VDR{dimer}:-1.87743329322 | |top_motifs=ONECUT1,2:2.80650326457;VSX1,2:2.03809659805;RORA:1.84989885395;NKX6-1,2:1.60990352387;SREBF1,2:1.58100135205;GATA4:1.51752165667;PAX4:1.48298420948;PAX8:1.37438939458;bHLH_family:1.35334578099;YY1:1.28959092358;EGR1..3:1.22660705012;ATF2:1.19517187566;HOX{A5,B5}:1.18577327131;SOX17:1.17747365904;AIRE:1.1724009245;CRX:1.12385765279;STAT1,3:1.10413157469;FOXN1:1.08509211841;FOXQ1:1.0189048147;NRF1:0.967927620957;TEF:0.937939067239;RREB1:0.935079061692;EVI1:0.92077056794;ATF4:0.902040241137;NANOG:0.899841882325;STAT5{A,B}:0.883450856431;TOPORS:0.876920324572;POU1F1:0.874302498575;ZNF143:0.85390929594;HIF1A:0.826099383512;NFIL3:0.810050084497;MZF1:0.806745354389;FOX{F1,F2,J1}:0.786269276416;LMO2:0.767987532211;CDX1,2,4:0.685018379215;RFX1:0.62734971104;JUN:0.571888973899;CUX2:0.571312239313;ADNP_IRX_SIX_ZHX:0.560832832364;ELK1,4_GABP{A,B1}:0.551716042906;HOX{A4,D4}:0.547705264644;TAL1_TCF{3,4,12}:0.546636043023;BREu{core}:0.540776599074;PATZ1:0.540332747701;HBP1_HMGB_SSRP1_UBTF:0.509795414911;MYB:0.485870125552;TLX2:0.480377500757;RFX2..5_RFXANK_RFXAP:0.4753743552;FOXD3:0.463764693731;ESR1:0.445404797094;GZF1:0.428862399102;AHR_ARNT_ARNT2:0.422042483316;ZNF384:0.417345974173;GATA6:0.41208894663;PRRX1,2:0.410149590092;NKX2-1,4:0.396920490296;SOX{8,9,10}:0.394326621353;TFAP2B:0.373491916358;FOXA2:0.370865235386;ZBTB6:0.367880002642;REST:0.352997874707;GTF2I:0.322031834104;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.3102354529;PAX1,9:0.302877896498;FOXP1:0.284516347135;GTF2A1,2:0.283203839373;RBPJ:0.259340868553;PITX1..3:0.23675044312;ZFP161:0.232819477682;GFI1:0.211192659662;SOX2:0.208940751739;ALX1:0.197094292868;MEF2{A,B,C,D}:0.191785804411;DMAP1_NCOR{1,2}_SMARC:0.184335925822;TFDP1:0.183391782254;NR5A1,2:0.182682947168;CEBPA,B_DDIT3:0.16629929968;ATF5_CREB3:0.152074204826;EP300:0.131963975723;CREB1:0.130353571668;FOX{D1,D2}:0.123541397607;LEF1_TCF7_TCF7L1,2:0.112575568123;HSF1,2:0.111786922473;SP1:0.103319002543;NR6A1:0.102176091445;PAX2:0.0744446618951;LHX3,4:0.0696794522246;HNF4A_NR2F1,2:0.0676492088504;HAND1,2:0.0552103053577;GFI1B:0.027884103909;FOXP3:0.0194682239709;HOXA9_MEIS1:0.00603684771303;MAZ:0.00330492352286;E2F1..5:-0.0121272727208;ATF6:-0.0150369276617;NKX2-2,8:-0.0327043423946;DBP:-0.0350327636125;TGIF1:-0.0527349363668;HLF:-0.0533448688157;TEAD1:-0.0855379162993;MED-1{core}:-0.0905989816386;PRDM1:-0.102612401693;ZBTB16:-0.103261089436;NFATC1..3:-0.123340982897;T:-0.131145432701;SOX5:-0.138462883795;ARID5B:-0.140557089069;SPZ1:-0.147921167578;TP53:-0.162564285399;NKX2-3_NKX2-5:-0.184712330797;NANOG{mouse}:-0.198491775071;NFY{A,B,C}:-0.200208536351;ZNF423:-0.216543136856;NKX3-2:-0.23041066355;ZNF148:-0.238305137998;FOS_FOS{B,L1}_JUN{B,D}:-0.240858323522;ELF1,2,4:-0.260398141372;MYOD1:-0.261680731267;IKZF1:-0.263371915387;NKX3-1:-0.27262303517;FOXM1:-0.273030591194;PPARG:-0.280853485164;OCT4_SOX2{dimer}:-0.283843588233;HNF1A:-0.319568924381;POU2F1..3:-0.321080244586;HMGA1,2:-0.332705960824;HIC1:-0.332830352791;TFAP4:-0.335402864872;SNAI1..3:-0.344047825589;TBX4,5:-0.347174107675;NR3C1:-0.361157110523;UFEwm:-0.362175804931;BACH2:-0.367577995918;MYBL2:-0.379954751684;EN1,2:-0.386775255307;SPI1:-0.391485622171;ZIC1..3:-0.411975620089;IKZF2:-0.41242750308;ZEB1:-0.41794950545;NFKB1_REL_RELA:-0.42313671439;MYFfamily:-0.440523439592;EBF1:-0.441446164998;SPIB:-0.467493365544;FOSL2:-0.482257984582;RUNX1..3:-0.491487415626;PAX5:-0.493418545585;MTF1:-0.51090545315;ZNF238:-0.524316436292;HMX1:-0.526036740274;KLF4:-0.536529022619;PAX3,7:-0.541961058427;NFE2:-0.559127000691;PBX1:-0.563894452679;IRF7:-0.57943999923;FOXL1:-0.596159061321;SRF:-0.630247760635;FOX{I1,J2}:-0.63059139382;CDC5L:-0.638083918803;BPTF:-0.644448228045;NR1H4:-0.700581967357;NHLH1,2:-0.706164447884;STAT2,4,6:-0.724806261529;ESRRA:-0.743240657305;TLX1..3_NFIC{dimer}:-0.7687107389;XCPE1{core}:-0.785243233115;GCM1,2:-0.793010266623;NFIX:-0.811658466452;POU6F1:-0.820010613508;TFCP2:-0.866164492062;XBP1:-0.881806711284;HOX{A6,A7,B6,B7}:-0.928587394076;TFAP2{A,C}:-0.935469686738;POU3F1..4:-0.939153456374;RXR{A,B,G}:-0.957742216546;ETS1,2:-0.967835541381;IRF1,2:-0.973372226602;MTE{core}:-0.989499021612;NFE2L2:-1.02234299004;AR:-1.03555222806;POU5F1:-1.03594277858;PAX6:-1.09464294228;FOXO1,3,4:-1.11582401486;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.16537604193;NFE2L1:-1.17517212606;ALX4:-1.20011151886;SMAD1..7,9:-1.33191905354;GLI1..3:-1.36891965131;PDX1:-1.41622340109;HES1:-1.42546211973;MAFB:-1.58491836973;TBP:-1.70612212965;RXRA_VDR{dimer}:-1.87743329322 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10410-106B5;search_select_hide=table117:FF:10410-106B5 | |||
}} | }} | ||
Latest revision as of 13:59, 3 June 2020
| Name: | extraskeletal myxoid chondrosarcoma cell line:H-EMC-SS |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs10728 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
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| HumanCAGEScan Download raw sequence, BAM & CTSS | |||||||||||||||||||||||||||
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| RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10728
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10728
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.623 |
| 10 | 10 | 0.296 |
| 100 | 100 | 0.92 |
| 101 | 101 | 0.593 |
| 102 | 102 | 0.722 |
| 103 | 103 | 0.0231 |
| 104 | 104 | 0.741 |
| 105 | 105 | 0.864 |
| 106 | 106 | 0.00123 |
| 107 | 107 | 0.00518 |
| 108 | 108 | 0.19 |
| 109 | 109 | 0.305 |
| 11 | 11 | 0.124 |
| 110 | 110 | 0.869 |
| 111 | 111 | 0.41 |
| 112 | 112 | 0.0583 |
| 113 | 113 | 0.263 |
| 114 | 114 | 0.339 |
| 115 | 115 | 0.522 |
| 116 | 116 | 0.667 |
| 117 | 117 | 0.708 |
| 118 | 118 | 0.348 |
| 119 | 119 | 0.341 |
| 12 | 12 | 0.323 |
| 120 | 120 | 0.907 |
| 121 | 121 | 0.181 |
| 122 | 122 | 0.222 |
| 123 | 123 | 0.104 |
| 124 | 124 | 0.917 |
| 125 | 125 | 0.341 |
| 126 | 126 | 0.322 |
| 127 | 127 | 0.0655 |
| 128 | 128 | 0.056 |
| 129 | 129 | 0.828 |
| 13 | 13 | 0.542 |
| 130 | 130 | 0.373 |
| 131 | 131 | 0.99 |
| 132 | 132 | 0.851 |
| 133 | 133 | 0.961 |
| 134 | 134 | 0.871 |
| 135 | 135 | 0.176 |
| 136 | 136 | 0.785 |
| 137 | 137 | 0.27 |
| 138 | 138 | 0.909 |
| 139 | 139 | 0.997 |
| 14 | 14 | 0.451 |
| 140 | 140 | 2.76837e-6 |
| 141 | 141 | 0.968 |
| 142 | 142 | 0.897 |
| 143 | 143 | 0.00623 |
| 144 | 144 | 0.887 |
| 145 | 145 | 0.196 |
| 146 | 146 | 0.501 |
| 147 | 147 | 0.802 |
| 148 | 148 | 0.00224 |
| 149 | 149 | 0.265 |
| 15 | 15 | 0.511 |
| 150 | 150 | 0.354 |
| 151 | 151 | 0.803 |
| 152 | 152 | 0.14 |
| 153 | 153 | 0.648 |
| 154 | 154 | 0.693 |
| 155 | 155 | 0.43 |
| 156 | 156 | 0.534 |
| 157 | 157 | 0.0555 |
| 158 | 158 | 0.754 |
| 159 | 159 | 0.878 |
| 16 | 16 | 0.3 |
| 160 | 160 | 0.0415 |
| 161 | 161 | 0.439 |
| 162 | 162 | 0.484 |
| 163 | 163 | 0.214 |
| 164 | 164 | 0.94 |
| 165 | 165 | 0.246 |
| 166 | 166 | 0.373 |
| 167 | 167 | 0.438 |
| 168 | 168 | 0.0959 |
| 169 | 169 | 0.0773 |
| 17 | 17 | 0.131 |
| 18 | 18 | 0.212 |
| 19 | 19 | 0.143 |
| 2 | 2 | 0.226 |
| 20 | 20 | 0.491 |
| 21 | 21 | 0.394 |
| 22 | 22 | 0.32 |
| 23 | 23 | 0.00861 |
| 24 | 24 | 0.912 |
| 25 | 25 | 0.331 |
| 26 | 26 | 0.793 |
| 27 | 27 | 0.13 |
| 28 | 28 | 0.796 |
| 29 | 29 | 0.396 |
| 3 | 3 | 0.44 |
| 30 | 30 | 0.414 |
| 31 | 31 | 0.989 |
| 32 | 32 | 0.00411 |
| 33 | 33 | 0.542 |
| 34 | 34 | 0.421 |
| 35 | 35 | 0.644 |
| 36 | 36 | 0.116 |
| 37 | 37 | 0.381 |
| 38 | 38 | 0.378 |
| 39 | 39 | 0.117 |
| 4 | 4 | 0.771 |
| 40 | 40 | 0.0364 |
| 41 | 41 | 0.0174 |
| 42 | 42 | 0.719 |
| 43 | 43 | 0.149 |
| 44 | 44 | 0.02 |
| 45 | 45 | 0.33 |
| 46 | 46 | 0.273 |
| 47 | 47 | 0.698 |
| 48 | 48 | 0.404 |
| 49 | 49 | 0.433 |
| 5 | 5 | 0.538 |
| 50 | 50 | 0.82 |
| 51 | 51 | 0.488 |
| 52 | 52 | 0.17 |
| 53 | 53 | 0.908 |
| 54 | 54 | 0.648 |
| 55 | 55 | 0.689 |
| 56 | 56 | 0.828 |
| 57 | 57 | 0.809 |
| 58 | 58 | 0.0792 |
| 59 | 59 | 0.0168 |
| 6 | 6 | 0.256 |
| 60 | 60 | 0.0333 |
| 61 | 61 | 0.95 |
| 62 | 62 | 0.0388 |
| 63 | 63 | 0.149 |
| 64 | 64 | 0.446 |
| 65 | 65 | 0.107 |
| 66 | 66 | 0.781 |
| 67 | 67 | 0.707 |
| 68 | 68 | 0.428 |
| 69 | 69 | 0.594 |
| 7 | 7 | 0.368 |
| 70 | 70 | 0.369 |
| 71 | 71 | 0.175 |
| 72 | 72 | 0.347 |
| 73 | 73 | 0.0912 |
| 74 | 74 | 0.466 |
| 75 | 75 | 0.822 |
| 76 | 76 | 0.483 |
| 77 | 77 | 0.0893 |
| 78 | 78 | 0.319 |
| 79 | 79 | 0.0173 |
| 8 | 8 | 0.319 |
| 80 | 80 | 0.967 |
| 81 | 81 | 0.309 |
| 82 | 82 | 0.0501 |
| 83 | 83 | 0.105 |
| 84 | 84 | 0.847 |
| 85 | 85 | 0.19 |
| 86 | 86 | 0.886 |
| 87 | 87 | 0.56 |
| 88 | 88 | 0.416 |
| 89 | 89 | 0.186 |
| 9 | 9 | 0.0398 |
| 90 | 90 | 0.938 |
| 91 | 91 | 0.0141 |
| 92 | 92 | 0.375 |
| 93 | 93 | 0.0806 |
| 94 | 94 | 0.301 |
| 95 | 95 | 0.367 |
| 96 | 96 | 0.259 |
| 97 | 97 | 0.981 |
| 98 | 98 | 0.612 |
| 99 | 99 | 0.584 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10728
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
DOID:6496 extraskeletal myxoid chondrosarcoma
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0101574 chondrosarcoma cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000151 (secretory cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000499 (stromal cell)
0000153 (GAG secreting cell)
0000667 (collagen secreting cell)
0000327 (extracellular matrix secreting cell)
0000447 (carbohydrate secreting cell)
0000255 (eukaryotic cell)
0000138 (chondrocyte)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
201 (connective tissue cancer)
0060100 (musculoskeletal system cancer)
1115 (sarcoma)
3371 (chondrosarcoma)
4549 (extraosseous chondrosarcoma)
5861 (myxoid chondrosarcoma)
6496 (extraskeletal myxoid chondrosarcoma)
UBERON: Anatomy
0000468 (multi-cellular organism)
0001474 (bone element)
0002384 (connective tissue)
0002418 (cartilage tissue)
0000479 (tissue)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0004765 (skeletal element)
0004755 (skeletal tissue)
0002204 (musculoskeletal system)
0001434 (skeletal system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100385 (bone cancer cell line sample)
0101574 (chondrosarcoma cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
