FF:10412-106B7: Difference between revisions
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{{f5samples | {{f5samples | ||
| | |DRA_sample_Accession=CAGE@SAMD00005019 | ||
| | |HumanCAGEScanFiles=NCig10054;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/malignant%2520trichilemmal%2520cyst%2520cell%2520line%253aDJM-1.NCig10054.10412-106B7.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/malignant%2520trichilemmal%2520cyst%2520cell%2520line%253aDJM-1.NCig10054.10412-106B7.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/malignant%2520trichilemmal%2520cyst%2520cell%2520line%253aDJM-1.NCig10054.10412-106B7.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/malignant%2520trichilemmal%2520cyst%2520cell%2520line%253aDJM-1.NCig10054.10412-106B7.hg19.GCTATA.pairs.bed.gz | ||
|accession_numbers=CAGE;DRX007926;DRR008798;DRZ000223;DRZ001608;DRZ011573;DRZ012958 | |||
| | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_disease_facet=DOID: | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000255 | ||
| | |ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:305,DOID:1749 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0102024,FF:0101120 | |||
|comment= | |||
|created_by= | |||
|creation_date= | |||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |||
|expression_enrichment_score=chr17:7493405..7493419,-!p1@SOX15!2.38!239.38!SOX15;;chr3:189507432..189507459,+!p1@TP63!2.38!237.46!TP63;;chr1:201979743..201979762,+!p1@ELF3!2.13!133.41!ELF3;;chr1:209979467..209979494,-!p1@IRF6!2.06!126.39!IRF6;;chr11:34642612..34642646,+!p1@EHF!2.05!112.35!EHF;;chr1:201979703..201979721,+!p2@ELF3!1.85!70.22!ELF3;;chr17:80797886..80797906,-!p1@ZNF750!1.83!66.39!ZNF750;;chr17:7492684..7492778,-!p2@SOX15!1.81!131.50!SOX15;;chr6:10415484..10415508,-!p3@TFAP2A!1.71!49.79!TFAP2A;;chr8:10588010..10588030,-!p1@SOX7!1.70!49.15!SOX7;;chr6:1312325..1312340,+!p1@FOXQ1!1.69!75.96!FOXQ1;;chr2:176969179..176969226,+!p2@HOXD11!1.68!46.60!HOXD11;;chr8:102504651..102504683,+!p1@GRHL2!1.65!43.41!GRHL2;;chr15:67418047..67418093,+!p4@SMAD3!1.61!49.79!SMAD3;;chr1:209979411..209979433,-!p2@IRF6!1.61!39.58!IRF6;;chr6:10415276..10415341,-!p2@TFAP2A!1.60!46.60!TFAP2A;;chr13:73633131..73633149,+!p1@KLF5!1.57!370.88!KLF5;;chr2:176969228..176969260,+!p1@HOXD11!1.57!36.39!HOXD11;;chr8:71157595..71157616,-!p13@NCOA2!1.57!35.75!NCOA2;;chr1:158979872..158979898,+!p3@IFI16!1.54!99.58!IFI16;;chr21:36421535..36421610,-!p2@RUNX1!1.50!104.69!RUNX1;;chr6:10419768..10419819,-!p6@TFAP2A!1.50!30.64!TFAP2A;;chr14:37131058..37131139,+!p1@PAX9!1.48!29.36!PAX9;;chr6:126240380..126240430,+!p2@NCOA7!1.47!72.77!NCOA7;;chr15:101069113..101069169,-!p1@CERS3!1.44!26.81!CERS3;;chr5:134369905..134369972,-!p1@PITX1!1.43!39.58!PITX1;;chr15:83953397..83953425,-!p1@BNC1!1.38!26.17!BNC1;;chr17:48072574..48072597,-!p1@DLX3!1.38!22.98!DLX3;;chr6:10412600..10412637,-!p1@TFAP2A!1.34!34.47!TFAP2A;;chr6:126240442..126240459,+!p4@NCOA7!1.33!26.17!NCOA7;;chr3:111314186..111314204,-!p1@ZBED2!1.33!20.43!ZBED2;;chr1:158979792..158979814,+!p2@IFI16!1.30!178.10!IFI16;;chr1:6479968..6479986,-!p1@HES2!1.30!19.15!HES2;;chr5:134369879..134369898,-!p2@PITX1!1.28!17.87!PITX1;;chr5:2751762..2751784,-!p1@IRX2!1.28!17.87!IRX2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.28!17.87!HOXC5;;chr15:67418119..67418162,+!p5@SMAD3!1.26!19.15!SMAD3;;chr19:45908292..45908374,-!p1@PPP1R13L!1.25!144.90!PPP1R13L;;chr6:126102292..126102329,+!p3@NCOA7!1.25!54.90!NCOA7;;chr19:45971246..45971265,+!p1@FOSB!1.23!291.72!FOSB;;chr11:120107344..120107351,+!p1@POU2F3!1.23!19.15!POU2F3;;chr3:189507460..189507471,+!p3@TP63!1.23!15.96!TP63;;chr13:41593425..41593480,-!p1@ELF1!1.21!95.11!ELF1;;chr11:34642656..34642667,+!p2@EHF!1.21!15.32!EHF;;chr8:102504690..102504704,+!p3@GRHL2!1.21!15.32!GRHL2;;chr12:54785074..54785122,-!p2@ZNF385A!1.20!22.98!ZNF385A;;chr11:65667884..65667895,-!p2@FOSL1!1.18!54.90!FOSL1;;chr17:38256822..38256851,-!p1@NR1D1!1.16!105.96!NR1D1;;chr6:126240356..126240379,+!p7@NCOA7!1.16!16.60!NCOA7;;chr7:27153454..27153469,-!p2@HOXA3!1.16!13.41!HOXA3;;chr8:49833948..49833973,-!p2@SNAI2!1.14!81.71!SNAI2;;chr5:137804405..137804444,+!p3@EGR1!1.14!15.32!EGR1;;chr11:129245526..129245553,+!p1@BARX2!1.14!12.77!BARX2;;chr2:176969097..176969109,+!p3@HOXD11!1.14!12.77!HOXD11;;chr7:27195867..27195893,-!p3@HOXA7!1.12!12.13!HOXA7;;chr7:27205136..27205164,-!p1@HOXA9!1.12!12.13!HOXA9;;chr7:96654133..96654150,-!p1@DLX5!1.12!12.13!DLX5;;chr12:54785054..54785072,-!p4@ZNF385A!1.11!13.41!ZNF385A;;chr11:65667846..65667868,-!p1@FOSL1!1.10!302.57!FOSL1;;chr8:102504979..102505010,+!p2@GRHL2!1.10!11.49!GRHL2;;chr11:34645791..34645836,+!p3@EHF!1.07!10.85!EHF;;chr1:935467..935484,-!p1@HES4!1.06!46.60!HES4;;chr1:158979851..158979865,+!p5@IFI16!1.05!22.98!IFI16;;chr12:125002827..125002855,-!p5@NCOR2!1.05!14.68!NCOR2;;chr2:176969124..176969155,+!p5@HOXD11!1.05!10.21!HOXD11;;chr8:128748470..128748487,+!p1@MYC!1.03!1075.61!MYC;;chr10:48355030..48355090,+!p1@ZNF488!1.03!12.77!ZNF488;;chr19:12902289..12902307,+!p1@JUNB!1.02!2183.77!JUNB;;chr3:193853927..193853944,+!p1@HES1!1.02!315.98!HES1;;chr17:70117153..70117174,+!p1@SOX9!1.02!98.94!SOX9;;chr8:22550982..22550999,-!p1@EGR3!1.01!26.81!EGR3;;chr3:32023232..32023273,+!p1@ZNF860!1.01!13.41!ZNF860;;chr8:49833978..49833996,-!p1@SNAI2!1.00!187.03!SNAI2;;chr2:60780607..60780624,-!p2@BCL11A!1.00!28.09!BCL11A;;chr20:55204351..55204377,+!p1@TFAP2C!1.00!11.49!TFAP2C;;chr6:126240463..126240489,+!p6@NCOA7!1.00!10.21!NCOA7;;chr6:10413188..10413249,-!p7@TFAP2A!1.00!8.94!TFAP2A;;chr17:46682321..46682362,-!p1@HOXB6!1.00!8.94!HOXB6;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.00!8.94!ZBED1;;chr9:110252035..110252057,-!p1@KLF4!0.98!140.44!KLF4;;chr2:231084639..231084654,-!p2@SP110!0.97!14.04!SP110;;chr19:12476443..12476467,-!p1@ZNF442!0.97!14.04!ZNF442;;chr20:39317868..39317884,-!p1@MAFB!0.96!99.58!MAFB;;chr12:2986275..2986363,-!p1@FOXM1!0.95!82.35!FOXM1;;chr22:38597987..38598021,+!p2@MAFF!0.94!48.51!MAFF;;chr3:181429704..181429722,+!p1@SOX2!0.94!7.66!SOX2;;chr1:61548225..61548299,+!p1@NFIA!0.93!101.50!NFIA;;chr2:46524897..46524911,+!p2@EPAS1!0.92!21.07!EPAS1;;chr17:46687959..46688007,-!p2@HOXB7!0.92!10.21!HOXB7;;chr1:212782094..212782109,+!p1@ATF3!0.91!204.27!ATF3;;chr5:134369643..134369675,-!p4@PITX1!0.90!7.02!PITX1;;chr17:46703212..46703238,-!p2@HOXB9!0.9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232;;chr17:7492504..7492520,-!p3@SOX15!0.36!1.28!SOX15;;chr19:11750543..11750565,+!p2@ZNF833P!0.36!1.28!ZNF833P;;chr19:12267577..12267593,-!p3@ZNF625!0.36!1.28!ZNF625;;chr19:22034784..22034801,-!p4@ZNF43!0.36!1.28!ZNF43;;chr19:31840699..31840720,-!p7@TSHZ3!0.36!1.28!TSHZ3;;chr5:133450458..133450469,+!p4@TCF7!0.36!1.28!TCF7;;chr5:3595961..3595975,+!p3@IRX1!0.36!1.28!IRX1;;chr6:100061724..100061753,+!p1@PRDM13!0.36!1.28!PRDM13;;chr6:10412477..10412490,-!p10@TFAP2A!0.36!1.28!TFAP2A;;chr6:10415645..10415675,-!p19@TFAP2A!0.36!1.28!TFAP2A;;chr6:10419884..10419898,-!p11@TFAP2A!0.36!1.28!TFAP2A;;chr6:106546786..106546802,+!p6@PRDM1!0.36!1.28!PRDM1;;chr6:1389989..1390019,+!p2@FOXF2!0.36!1.28!FOXF2;;chr6:168333280..168333294,+!p9@MLLT4!0.36!1.28!MLLT4;;chr6:36355431..36355466,-!p1@ETV7!0.36!1.28!ETV7;;chr6:36355486..36355497,-!p3@ETV7!0.36!1.28!ETV7;;chr6:45389966..45389977,+!p23@RUNX2!0.36!1.28!RUNX2;;chr6:45390137..45390148,+!p12@RUNX2!0.36!1.28!RUNX2;;chr7:101917407..101917443,+!p3@CUX1!0.36!1.28!CUX1;;chr7:101917482..101917507,+!p6@CUX1!0.36!1.28!CUX1;;chr7:139762578..139762589,-!p2@PARP12!0.36!1.28!PARP12;;chr7:19156632..19156652,-!p3@TWIST1!0.36!1.28!TWIST1;;chr7:20826504..20826526,-!p1@SP8!0.36!1.28!SP8;;chr7:27153443..27153450,-!p8@HOXA3!0.36!1.28!HOXA3;;chr7:27153590..27153608,-!p7@HOXA3!0.36!1.28!HOXA3;;chr7:27205175..27205184,-!p3@HOXA9!0.36!1.28!HOXA9;;chr7:73038839..73038862,-!p1@MLXIPL!0.36!1.28!MLXIPL;;chr7:96635277..96635301,+!p7@DLX6!0.36!1.28!DLX6;;chr7:96635665..96635685,+!p6@DLX6!0.36!1.28!DLX6;;chr7:96654026..96654061,-!p2@DLX5!0.36!1.28!DLX5;;chr8:103668114..103668134,-!p5@KLF10!0.36!1.28!KLF10;;chr8:103668151..103668163,-!p12@KLF10!0.36!1.28!KLF10;;chr8:57123898..57123909,-!p3@PLAG1!0.36!1.28!PLAG1;;chr8:76319850..76319870,+!p4@HNF4G!0.36!1.28!HNF4G;;chr9:100615499..100615519,+!p1@FOXE1!0.36!1.28!FOXE1;;chr9:1050331..1050363,+!p1@DMRT2!0.36!1.28!DMRT2;;chr9:124976299..124976327,-!p3@LHX6!0.36!1.28!LHX6;;chr9:14314476..14314487,-!p9@NFIB!0.36!1.28!NFIB;;chrX:56258900..56258917,+!p4@KLF8!0.36!1.28!KLF8;;chr9:2158487..2158498,+!p21@SMARCA2!0.36!1.28!SMARCA2;;chr19:45251395..45251432,+!p8@BCL3!0.36!1.28!BCL3;;chr19:45257891..45257908,+!p17@BCL3!0.36!1.28!BCL3;;chr19:45972203..45972226,+!p5@FOSB!0.36!1.28!FOSB;;chr19:54024313..54024361,+!p7@ZNF331!0.36!1.28!ZNF331;;chr1:10856639..10856662,-!p2@CASZ1!0.36!1.28!CASZ1;;chr1:201979892..201979925,+!p3@ELF3!0.36!1.28!ELF3;;chr1:209979375..209979386,-!p4@IRF6!0.36!1.28!IRF6;;chr1:212873084..212873137,-!p2@BATF3!0.36!1.28!BATF3;;chr1:23694532..23694549,-!p8@ZNF436!0.36!1.28!ZNF436;;chr1:24646002..24646013,+!p3@GRHL3!0.36!1.28!GRHL3;;chr1:25256175..25256228,-!p5@RUNX3!0.36!1.28!RUNX3;;chr1:3607219..3607226,+!p16@TP73!0.36!1.28!TP73;;chr1:42801540..42801562,-!p4@FOXJ3!0.36!1.28!FOXJ3;;chr1:47779845..47779848,-!p3@STIL,p8@TAL1!0.36!1.28!TAL1;;chr1:8585919..8585943,-!p18@RERE!0.36!1.28!RERE;;chr20:50418128..50418147,-!p2@SALL4!0.36!1.28!SALL4;;chr20:51589792..51589811,+!p7@TSHZ2!0.36!1.28!TSHZ2;;chr20:55205825..55205847,+!p2@TFAP2C!0.36!1.28!TFAP2C;;chr21:34143971..34143983,-!p8@GCFC1!0.36!1.28!GCFC1;;chr21:36260495..36260506,-!p23@RUNX1!0.36!1.28!RUNX1;;chr21:40032558..40032578,-!p5@ERG!0.36!1.28!ERG;;chr21:40032884..40032915,-!p2@ERG!0.36!1.28!ERG;;chr22:41763452..41763466,+!p2@TEF!0.36!1.28!TEF;;chr2:10183635..10183647,+!p3@KLF11!0.36!1.28!KLF11;;chr2:172949484..172949522,+!p1@DLX1!0.36!1.28!DLX1;;chr2:176971685..176971700,+!p6@HOXD11!0.36!1.28!HOXD11;;chr2:176987415..176987425,+!p4@HOXD9!0.36!1.28!HOXD9;;chr2:176987441..176987454,+!p1@HOXD9!0.36!1.28!HOXD9;;chr2:176994919..176994931,+!p2@HOXD8!0.36!1.28!HOXD8;;chr2:177001290..177001315,+!p1@HOXD3!0.36!1.28!HOXD3;;chr2:214015343..214015366,-!p3@IKZF2!0.36!1.28!IKZF2;;chr2:237077022..237077038,-!p1@GBX2!0.36!1.28!GBX2;;chr2:60780730..60780742,-!p5@BCL11A!0.36!1.28!BCL11A;;chr2:63277978..63277995,+!p2@OTX1!0.36!1.28!OTX1;;chr2:74730087..74730102,-!p4@LBX2!0.36!1.28!LBX2;;chr3:101573360..101573363,+!p8@NFKBIZ!0.36!1.28!NFKBIZ;;chr3:141087562..141087594,+!p12@ZBTB38!0.36!1.28!ZBTB38;;chr3:141868189..141868200,-!p9@TFDP2!0.36!1.28!TFDP2;;chr3:147111198..147111225,+!p4@ZIC1!0.36!1.28!ZIC1;;chr3:147111231..147111281,+!p3@ZIC1!0.36!1.28!ZIC1;;chr3:147111317..147111328,+!p8@ZIC1!0.36!1.28!ZIC1;;chr3:185784049..185784050,-!p7@ETV5!0.36!1.28!ETV5;;chr3:189526056..189526064,+!p15@TP63!0.36!1.28!TP63;;chr3:5022254..5022271,+!p12@BHLHE40!0.36!1.28!BHLHE40;;chr3:5022272..5022321,+!p7@BHLHE40!0.36!1.28!BHLHE40;;chr4:111544219..111544240,-!p1@PITX2!0.36!1.28!PITX2;;chr20:30193083..30193098,+!p1@ID1!0.35!164.69!ID1;;chr1:42800860..42800912,-!p1@FOXJ3!0.35!74.69!FOXJ3;;chr9:137218281..137218340,+!p1@RXRA!0.35!57.45!RXRA;;chr19:45251943..45252006,+!p1@BCL3!0.35!53.62!BCL3;;chrX:70586140..70586218,+!p1@TAF1!0.35!37.02!TAF1;;chr15:85291785..85291848,+!p1@ZNF592!0.35!36.39!ZNF592;;chr8:145159357..145159373,+!p3@MAF1!0.35!25.53!MAF1;;chr1:200379129..200379174,-!p1@ZNF281!0.35!24.26!ZNF281;;chr19:11708259..11708309,+!p1@ZNF627!0.35!19.79!ZNF627;;chr19:12662240..12662310,-!p1@ZNF564,p1@ZNF709!0.35!15.32!ZNF564;;chr19:55987963..55987996,+!p1@ZNF628!0.35!14.68!ZNF628;;chr7:99070499..99070523,+!p1@ZNF789!0.35!10.21!ZNF789;;chr3:129158854..129158883,-!p3@MBD4!0.35!9.58!MBD4;;chr13:41635285..41635356,-!p3@ELF1!0.35!7.66!ELF1;;chr9:117160738..117160782,-!p2@AKNA!0.35!7.66!AKNA;;chr19:53289995..53290050,-!p1@ZNF600!0.35!7.66!ZNF600;;chr1:43148792..43148849,+!p2@YBX1!0.35!7.02!YBX1;;chr1:151043216..151043256,+!p1@GABPB2!0.35!6.38!GABPB2;;chr19:53868940..53868990,+!p1@ZNF525,p2@ZNF765!0.35!5.11!ZNF525;;chr19:46271505..46271575,-!p2@SIX5!0.35!4.47!SIX5;;chr9:3525727..3525828,-!p2@RFX3!0.35!4.47!RFX3;;chr14:35872962..35873025,-!p3@NFKBIA!0.35!4.47!NFKBIA;;chr17:38256973..38256990,-!p5@NR1D1!0.35!3.83!NR1D1;;chr6:157098579..157098634,+!p4@ARID1B!0.35!3.83!ARID1B;;chr5:88179230..88179270,-!p4@MEF2C!0.35!3.19!MEF2C;;chr8:123793959..123793977,+!p4@ZHX2!0.35!3.19!ZHX2;;chr12:66218183..66218209,+!p4@HMGA2!0.35!3.19!HMGA2;;chr1:33721873..33721898,+!p3@ZNF362!0.35!3.19!ZNF362;;chr16:89787973..89788001,+!p3@ZNF276!0.35!3.19!ZNF276;;chr19:17356189..17356221,-!p2@NR2F6!0.35!2.55!NR2F6;;chr10:3824332..3824425,-!p4@KLF6!0.35!2.55!KLF6;;chr3:107244229..107244254,+!p3@BBX!0.35!2.55!BBX;;chr19:54024251..54024305,+!p4@ZNF331!0.35!2.55!ZNF331;;chr18:3449330..3449344,+!p10@TGIF1!0.35!1.92!TGIF1;;chr19:12551824..12551846,-!p2@ZNF443!0.35!1.92!ZNF443;;chr12:57916584..57916682,+!p1@MBD6!0.34!39.58!MBD6;;chr2:28616337..28616355,+!p2@FOSL2!0.34!34.47!FOSL2;;chr19:7069690..7069726,+!p1@ZNF557!0.34!17.87!ZNF557;;chr6:33422343..33422394,+!p1@ZBTB9!0.34!12.77!ZBTB9;;chr1:14026671..14026705,+!p2@PRDM2!0.34!11.49!PRDM2;;chr15:85291544..85291598,+!p2@ZNF592!0.34!11.49!ZNF592;;chr14:100705335..100705360,+!p4@YY1!0.34!10.85!YY1;;chr11:65686952..65686975,+!p5@DRAP1!0.34!10.21!DRAP1;;chr19:9434841..9434886,+!p1@ZNF559!0.34!9.58!ZNF559;;chr19:53238260..53238312,-!p1@ZNF611!0.34!6.38!ZNF611;;chr1:40915725..40915808,+!p1@ZNF643!0.34!5.11!ZNF643;;chr19:21106081..21106115,+!p2@ZNF85!0.34!5.11!ZNF85;;chr19:36705547..36705597,-!p1@ZNF565!0.34!4.47!ZNF565;;chr6:91006518..91006570,-!p1@BACH2!0.34!3.83!BACH2;;chr3:71632840..71632857,-!p10@FOXP1!0.34!3.19!FOXP1;;chr6:1610293..1610310,+!p1@FOXC1!0.34!2.55!FOXC1;;chr7:148844581..148844606,+!p2@ZNF398!0.34!2.55!ZNF398;;chr19:35417798..35417842,+!p1@ZNF30!0.34!2.55!ZNF30;;chr1:205592857..205592880,-!p6@ELK4!0.34!2.55!ELK4;;chr6:45390343..45390388,+!p10@RUNX2!0.34!1.92!RUNX2;;chr3:170075103..170075114,+!p5@SKIL!0.34!1.92!SKIL;;chrX:131624056..131624069,-!p2@MBNL3!0.34!1.92!MBNL3;;chr1:78149041..78149142,-!p1@ZZZ3!0.33!36.39!ZZZ3;;chr10:45496346..45496409,+!p1@ZNF22!0.33!26.81!ZNF22;;chr15:41952591..41952672,+!p1@MGA!0.33!25.53!MGA;;chr9:14314566..14314618,-!p1@NFIB!0.33!22.98!NFIB;;chr19:42580274..42580375,+!p1@ZNF574!0.33!21.70!ZNF574;;chr6:33168126..33168180,-!p2@RXRB!0.33!19.79!RXRB;;chr1:205601093..205601158,-!p1@ELK4!0.33!16.60!ELK4;;chr12:19592405..19592492,+!p2@AEBP2!0.33!15.96!AEBP2;;chr1:157108130..157108173,-!p1@ETV3!0.33!13.41!ETV3;;chr9:125667518..125667588,-!p1@RC3H2!0.33!12.13!RC3H2;;chr19:9785724..9785740,-!p2@ZNF562!0.33!7.02!ZNF562;;chr8:128750654..128750793,+!p3@MYC!0.33!7.02!MYC;;chr3:114866084..114866118,-!p2@ZBTB20!0.33!6.38!ZBTB20;;chr19:53445819..53445860,-!p2@ZNF321P,p2@ZNF816-ZNF321P,p2@ZNF816!0.33!5.11!ZNF321P;;chr16:67062996..67063016,+!p3@CBFB!0.33!5.11!CBFB;;chr10:44070016..44070069,-!p1@ZNF239!0.33!5.11!ZNF239;;chr1:161736038..161736056,+!p4@ATF6!0.33!3.83!ATF6;;chr3:5021268..5021282,+!p4@BHLHE40!0.33!3.19!BHLHE40;;chr5:76383133..76383186,-!p2@ZBED3!0.33!3.19!ZBED3;;chr7:74072193..74072218,+!p4@GTF2I!0.33!2.55!GTF2I;; | |||
|fonse_cell_line=FF:0101120 | |fonse_cell_line=FF:0101120 | ||
|fonse_cell_line_closure=FF:0101120 | |fonse_cell_line_closure=FF:0101120 | ||
Line 66: | Line 40: | ||
|fonse_treatment= | |fonse_treatment= | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|top_motifs= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/malignant%2520trichilemmal%2520cyst%2520cell%2520line%253aDJM-1.CNhs10730.10412-106B7.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/malignant%2520trichilemmal%2520cyst%2520cell%2520line%253aDJM-1.CNhs10730.10412-106B7.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/malignant%2520trichilemmal%2520cyst%2520cell%2520line%253aDJM-1.CNhs10730.10412-106B7.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/malignant%2520trichilemmal%2520cyst%2520cell%2520line%253aDJM-1.CNhs10730.10412-106B7.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/malignant%2520trichilemmal%2520cyst%2520cell%2520line%253aDJM-1.CNhs10730.10412-106B7.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10412-106B7 | |||
|is_a=EFO:0002091;;FF:0000210;;FF:0102024 | |||
|is_obsolete= | |||
|library_id=CNhs10730 | |||
|library_id_phase_based=2:CNhs10730 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10412 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10412 | |||
|name=malignant trichilemmal cyst cell line:DJM-1 | |||
|namespace=FANTOM5 | |||
|part_of= | |||
|profile_cagescan=NCig10054,,, | |||
|profile_hcage=CNhs10730,LSID691,release008,COMPLETED | |||
|profile_rnaseq= | |||
|profile_srnaseq=,,, | |||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.275319912053276,0,0,0,0,0.30432407088703,0,0.267022506692272,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0.62239084420464,0,0,-0.153323010348428,0,0,0,0,0,0.366684204705359,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0.0215691736594172,0,0,0,0,0,0,0,0,0.082987162926022,0,0,0,0,0,-0.0436114919460079,0,-0.0969923612426051,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0111678059829884,0,0,0,0,0,0,-0.0379064118334975,0,0,0,0.155957541265887,-0.0325461665631552,0.107202184038856,0,0,0,0.259267121027721,0.147376219370674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178946318130815,0,0,0,0,0.113739844861982,0,0,0,0,0,0 | |||
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| |||
|rna_box=106 | |||
|rna_catalog_number= | |||
|rna_concentration=2.58273 | |||
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0 | |||
|rna_lot_number= | |||
|rna_od260/230=1.76 | |||
|rna_od260/280=2.06 | |||
|rna_position=B7 | |||
|rna_rin= | |||
|rna_sample_type=total RNA | |||
|rna_tube_id=106B7 | |||
|rna_weight_ug=64.56825 | |||
|sample_age=87 | |||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB0736 | |||
|sample_cell_line=DJM-1 | |||
|sample_cell_lot= | |||
|sample_cell_type=hair follicle, outer root sheath cell | |||
|sample_collaboration=Yukio Nakamura (RIKEN BRC) | |||
|sample_company=RIKEN Bioresource centre | |||
|sample_description= | |||
|sample_dev_stage=87 year old adult | |||
|sample_disease=malignant trichilemmal cyst | |||
|sample_donor(cell lot)= | |||
|sample_ethnicity=J | |||
|sample_experimental_condition= | |||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;2.60315194417238e-258!GO:0043226;organelle;1.12500525285017e-211!GO:0043229;intracellular organelle;7.53170543865792e-211!GO:0043231;intracellular membrane-bound organelle;1.75512346354935e-204!GO:0043227;membrane-bound organelle;1.86179370411629e-204!GO:0005737;cytoplasm;3.43365225192207e-154!GO:0044422;organelle part;1.64241121995495e-129!GO:0044446;intracellular organelle part;4.96534399709804e-128!GO:0005634;nucleus;8.44029116157356e-114!GO:0044237;cellular metabolic process;3.19354122997994e-93!GO:0044238;primary metabolic process;9.9653080037236e-93!GO:0043170;macromolecule metabolic process;2.42806910587642e-92!GO:0032991;macromolecular complex;5.31268749456931e-92!GO:0044444;cytoplasmic part;1.52387163441257e-90!GO:0044428;nuclear part;6.42739086564241e-82!GO:0030529;ribonucleoprotein complex;7.10822730580182e-79!GO:0003723;RNA binding;4.84837076603379e-77!GO:0043233;organelle lumen;2.36532177899911e-76!GO:0031974;membrane-enclosed lumen;2.36532177899911e-76!GO:0005515;protein binding;5.23661880776307e-76!GO:0043283;biopolymer metabolic process;1.1941054234449e-65!GO:0010467;gene expression;3.50605785635132e-63!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.8256658884093e-62!GO:0006396;RNA processing;2.67818956866652e-56!GO:0031981;nuclear lumen;4.81680038412546e-53!GO:0005739;mitochondrion;5.37090232172151e-51!GO:0016043;cellular component organization and biogenesis;1.71178181327092e-47!GO:0006412;translation;2.2624620532211e-47!GO:0043234;protein complex;1.55405418079783e-45!GO:0043228;non-membrane-bound organelle;2.73840270393338e-44!GO:0043232;intracellular non-membrane-bound organelle;2.73840270393338e-44!GO:0019538;protein metabolic process;1.14542685813115e-43!GO:0005840;ribosome;1.70251782159375e-43!GO:0003676;nucleic acid binding;4.41533062907702e-43!GO:0016071;mRNA metabolic process;3.12538862161855e-41!GO:0044267;cellular protein metabolic process;2.44615047807561e-39!GO:0033036;macromolecule localization;4.85207800911684e-39!GO:0044260;cellular macromolecule metabolic process;2.56030766037276e-38!GO:0015031;protein transport;7.91208519265609e-38!GO:0003735;structural constituent of ribosome;3.58743241200295e-37!GO:0008380;RNA splicing;3.98797825990276e-37!GO:0006259;DNA metabolic process;4.51714717177339e-37!GO:0016070;RNA metabolic process;7.07145264405392e-37!GO:0006397;mRNA processing;4.78764451749923e-36!GO:0006996;organelle organization and biogenesis;4.22038285530083e-35!GO:0008104;protein localization;5.05764600542281e-35!GO:0045184;establishment of protein localization;1.91928682961924e-34!GO:0022613;ribonucleoprotein complex biogenesis and assembly;2.65503301860988e-34!GO:0009059;macromolecule biosynthetic process;1.07541317520724e-32!GO:0031090;organelle membrane;1.29331121348769e-32!GO:0046907;intracellular transport;3.84231847332315e-32!GO:0033279;ribosomal subunit;7.82263742135475e-32!GO:0044249;cellular biosynthetic process;8.36441401455223e-32!GO:0031967;organelle envelope;2.10490534698169e-31!GO:0044429;mitochondrial part;2.37552675359095e-31!GO:0031975;envelope;4.4584218886346e-31!GO:0009058;biosynthetic process;5.53550871650035e-31!GO:0005829;cytosol;6.28160256931458e-31!GO:0065003;macromolecular complex assembly;1.31722617480394e-30!GO:0005654;nucleoplasm;1.61122520254609e-30!GO:0006886;intracellular protein transport;1.31558239241753e-27!GO:0022607;cellular component assembly;4.34352717249058e-27!GO:0005681;spliceosome;1.40732035378535e-26!GO:0007049;cell cycle;2.93667215168954e-26!GO:0044451;nucleoplasm part;8.0506707744744e-26!GO:0005730;nucleolus;1.50909626954411e-25!GO:0000166;nucleotide binding;1.83474218233905e-23!GO:0008134;transcription factor binding;3.12262903637716e-22!GO:0016462;pyrophosphatase activity;3.01100165586397e-21!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.27757190426224e-21!GO:0017111;nucleoside-triphosphatase activity;4.46502857603666e-21!GO:0016817;hydrolase activity, acting on acid anhydrides;5.47224227290169e-21!GO:0051649;establishment of cellular localization;7.86998837742838e-21!GO:0051641;cellular localization;1.2870931980774e-20!GO:0006974;response to DNA damage stimulus;2.51167514142447e-20!GO:0005830;cytosolic ribosome (sensu Eukaryota);2.97328529130065e-20!GO:0022402;cell cycle process;1.97501084105202e-19!GO:0016874;ligase activity;7.06031559230905e-19!GO:0005740;mitochondrial envelope;1.90622779135996e-18!GO:0005694;chromosome;2.46027386015922e-18!GO:0050794;regulation of cellular process;3.95240109977797e-18!GO:0006366;transcription from RNA polymerase II promoter;9.3260857605262e-18!GO:0043285;biopolymer catabolic process;9.37155987731622e-18!GO:0006512;ubiquitin cycle;1.02810864787025e-17!GO:0022618;protein-RNA complex assembly;1.25666963606905e-17!GO:0031966;mitochondrial membrane;1.2773879798514e-17!GO:0042254;ribosome biogenesis and assembly;1.80416192445141e-17!GO:0019866;organelle inner membrane;2.14770952500953e-17!GO:0000278;mitotic cell cycle;4.87316086288823e-17!GO:0051276;chromosome organization and biogenesis;4.9340980728713e-17!GO:0044445;cytosolic part;8.99522566992403e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;9.70288954810755e-17!GO:0015934;large ribosomal subunit;1.16803226659337e-16!GO:0006281;DNA repair;1.53360596646048e-16!GO:0019941;modification-dependent protein catabolic process;1.73171000319163e-16!GO:0043632;modification-dependent macromolecule catabolic process;1.73171000319163e-16!GO:0044257;cellular protein catabolic process;2.95177478750398e-16!GO:0006119;oxidative phosphorylation;3.05780830973094e-16!GO:0005743;mitochondrial inner membrane;3.53885743837861e-16!GO:0015935;small ribosomal subunit;4.2591705692834e-16!GO:0006511;ubiquitin-dependent protein catabolic process;4.4285821383273e-16!GO:0031980;mitochondrial lumen;4.89527306842093e-16!GO:0005759;mitochondrial matrix;4.89527306842093e-16!GO:0006605;protein targeting;8.26021663484762e-16!GO:0048770;pigment granule;8.70766960993732e-16!GO:0042470;melanosome;8.70766960993732e-16!GO:0032553;ribonucleotide binding;1.00290426128655e-15!GO:0032555;purine ribonucleotide binding;1.00290426128655e-15!GO:0006457;protein folding;1.7204677739389e-15!GO:0044427;chromosomal part;1.72438797627697e-15!GO:0044265;cellular macromolecule catabolic process;2.57420672338375e-15!GO:0017076;purine nucleotide binding;3.74816397369506e-15!GO:0004386;helicase activity;7.31815952316965e-15!GO:0030163;protein catabolic process;7.44943741526589e-15!GO:0012501;programmed cell death;8.05873415693717e-15!GO:0008135;translation factor activity, nucleic acid binding;9.63087511350075e-15!GO:0006915;apoptosis;1.12467666050308e-14!GO:0000502;proteasome complex (sensu Eukaryota);1.21095191068012e-14!GO:0006325;establishment and/or maintenance of chromatin architecture;1.69780712719111e-14!GO:0006260;DNA replication;1.7539586023086e-14!GO:0009719;response to endogenous stimulus;1.76164360846118e-14!GO:0005761;mitochondrial ribosome;1.92417842303674e-14!GO:0000313;organellar ribosome;1.92417842303674e-14!GO:0005524;ATP binding;3.347220304762e-14!GO:0003712;transcription cofactor activity;3.3877821204752e-14!GO:0044455;mitochondrial membrane part;3.61011718871672e-14!GO:0032559;adenyl ribonucleotide binding;6.02327994243603e-14!GO:0016604;nuclear body;6.02327994243603e-14!GO:0006323;DNA packaging;8.05959899183656e-14!GO:0009057;macromolecule catabolic process;8.74480228219597e-14!GO:0008219;cell death;1.20334927790974e-13!GO:0016265;death;1.20334927790974e-13!GO:0016887;ATPase activity;1.45575738374344e-13!GO:0019222;regulation of metabolic process;2.62691941229746e-13!GO:0030554;adenyl nucleotide binding;2.9822390278501e-13!GO:0043412;biopolymer modification;2.9822390278501e-13!GO:0005635;nuclear envelope;3.40373657825212e-13!GO:0012505;endomembrane system;3.45516872796489e-13!GO:0006913;nucleocytoplasmic transport;3.61270843128663e-13!GO:0000087;M phase of mitotic cell cycle;6.92086070530235e-13!GO:0050789;regulation of biological process;6.96508027513244e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;7.74423256537129e-13!GO:0000375;RNA splicing, via transesterification reactions;7.74423256537129e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;7.74423256537129e-13!GO:0051169;nuclear transport;8.57879149577492e-13!GO:0051082;unfolded protein binding;1.15533298152927e-12!GO:0007067;mitosis;1.17564271362853e-12!GO:0031965;nuclear membrane;1.84567017784911e-12!GO:0022403;cell cycle phase;3.02118846693049e-12!GO:0042623;ATPase activity, coupled;4.7521334549561e-12!GO:0005794;Golgi apparatus;4.7521334549561e-12!GO:0000074;regulation of progression through cell cycle;5.62717591858724e-12!GO:0051726;regulation of cell cycle;6.73889742589186e-12!GO:0006399;tRNA metabolic process;9.52641795577688e-12!GO:0016607;nuclear speck;1.34633900179614e-11!GO:0006446;regulation of translational initiation;1.70156334920416e-11!GO:0016072;rRNA metabolic process;2.07167535456641e-11!GO:0006364;rRNA processing;2.21343977188883e-11!GO:0005746;mitochondrial respiratory chain;2.27534017107016e-11!GO:0044453;nuclear membrane part;2.92459128300188e-11!GO:0051301;cell division;3.13715363432222e-11!GO:0003743;translation initiation factor activity;3.48027728102454e-11!GO:0008026;ATP-dependent helicase activity;3.64329275124972e-11!GO:0043687;post-translational protein modification;4.16034982628779e-11!GO:0006413;translational initiation;4.26828145046695e-11!GO:0048193;Golgi vesicle transport;4.57461420721406e-11!GO:0006464;protein modification process;4.66724262473792e-11!GO:0048523;negative regulation of cellular process;5.25808854727377e-11!GO:0008639;small protein conjugating enzyme activity;5.44173614631949e-11!GO:0004842;ubiquitin-protein ligase activity;9.14062598724042e-11!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.08885923931896e-10!GO:0005643;nuclear pore;1.1216605064235e-10!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.16585506233376e-10!GO:0044248;cellular catabolic process;1.57335381583908e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;1.81048667911596e-10!GO:0042981;regulation of apoptosis;2.23644134623123e-10!GO:0006403;RNA localization;2.33947792749329e-10!GO:0050657;nucleic acid transport;2.36770515147591e-10!GO:0051236;establishment of RNA localization;2.36770515147591e-10!GO:0050658;RNA transport;2.36770515147591e-10!GO:0019787;small conjugating protein ligase activity;2.50194480358048e-10!GO:0043067;regulation of programmed cell death;2.56903706866554e-10!GO:0031323;regulation of cellular metabolic process;2.99079774827178e-10!GO:0006333;chromatin assembly or disassembly;3.17614295404542e-10!GO:0000279;M phase;4.02491082713234e-10!GO:0000785;chromatin;4.22630182404325e-10!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.26652340044936e-10!GO:0006350;transcription;5.42507779669245e-10!GO:0050136;NADH dehydrogenase (quinone) activity;6.42694471633658e-10!GO:0003954;NADH dehydrogenase activity;6.42694471633658e-10!GO:0008137;NADH dehydrogenase (ubiquinone) activity;6.42694471633658e-10!GO:0006357;regulation of transcription from RNA polymerase II promoter;7.80235936419478e-10!GO:0016564;transcription repressor activity;8.65516526416818e-10!GO:0005783;endoplasmic reticulum;9.0759183960934e-10!GO:0017038;protein import;1.16769734397327e-09!GO:0016568;chromatin modification;1.70587232683131e-09!GO:0048519;negative regulation of biological process;1.96279392653361e-09!GO:0065004;protein-DNA complex assembly;3.26940182930022e-09!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.98125880280982e-09!GO:0065002;intracellular protein transport across a membrane;4.38487457543503e-09!GO:0051186;cofactor metabolic process;5.22962943558872e-09!GO:0042775;organelle ATP synthesis coupled electron transport;6.28634168748453e-09!GO:0042773;ATP synthesis coupled electron transport;6.28634168748453e-09!GO:0016881;acid-amino acid ligase activity;7.35992245004324e-09!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;9.80074201584811e-09!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.07613844367876e-08!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.17875083361452e-08!GO:0031324;negative regulation of cellular metabolic process;1.29786419999725e-08!GO:0010468;regulation of gene expression;1.41179401929644e-08!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.53250163509258e-08!GO:0016192;vesicle-mediated transport;1.53964451896021e-08!GO:0065007;biological regulation;1.78824061502524e-08!GO:0051246;regulation of protein metabolic process;1.78991862430614e-08!GO:0016563;transcription activator activity;1.82535095103918e-08!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.89710919052583e-08!GO:0030964;NADH dehydrogenase complex (quinone);2.07720925831733e-08!GO:0045271;respiratory chain complex I;2.07720925831733e-08!GO:0005747;mitochondrial respiratory chain complex I;2.07720925831733e-08!GO:0051028;mRNA transport;3.22552716598615e-08!GO:0046930;pore complex;3.24214683086311e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;3.34749522280563e-08!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.62553253963601e-08!GO:0006461;protein complex assembly;3.62553253963601e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;3.74008760244456e-08!GO:0004812;aminoacyl-tRNA ligase activity;3.74008760244456e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;3.74008760244456e-08!GO:0043566;structure-specific DNA binding;3.76251946360248e-08!GO:0032774;RNA biosynthetic process;5.08280342383781e-08!GO:0006351;transcription, DNA-dependent;6.46534773240911e-08!GO:0008565;protein transporter activity;6.79323623065606e-08!GO:0044432;endoplasmic reticulum part;6.84806847584993e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;6.97788585942881e-08!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;7.71547758849553e-08!GO:0048522;positive regulation of cellular process;8.38802257705517e-08!GO:0032446;protein modification by small protein conjugation;8.56646093698137e-08!GO:0043038;amino acid activation;8.77270232487886e-08!GO:0006418;tRNA aminoacylation for protein translation;8.77270232487886e-08!GO:0043039;tRNA aminoacylation;8.77270232487886e-08!GO:0009055;electron carrier activity;8.91116285322401e-08!GO:0015630;microtubule cytoskeleton;1.02260396780129e-07!GO:0016567;protein ubiquitination;1.1457822136215e-07!GO:0016779;nucleotidyltransferase activity;1.50677812322779e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;1.63815195542337e-07!GO:0006261;DNA-dependent DNA replication;1.78077829793322e-07!GO:0043069;negative regulation of programmed cell death;2.09917559510347e-07!GO:0051170;nuclear import;2.38145391838677e-07!GO:0003714;transcription corepressor activity;2.43741875756769e-07!GO:0007005;mitochondrion organization and biogenesis;2.46795068223807e-07!GO:0009892;negative regulation of metabolic process;2.89104773492184e-07!GO:0016481;negative regulation of transcription;2.89977979115263e-07!GO:0005667;transcription factor complex;3.86137063118207e-07!GO:0006732;coenzyme metabolic process;3.88322211219375e-07!GO:0003713;transcription coactivator activity;3.95055491115173e-07!GO:0006606;protein import into nucleus;4.09525912985005e-07!GO:0043066;negative regulation of apoptosis;4.75823875790321e-07!GO:0003697;single-stranded DNA binding;5.12673926204002e-07!GO:0006916;anti-apoptosis;6.30256818062083e-07!GO:0015986;ATP synthesis coupled proton transport;7.98077407812516e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;7.98077407812516e-07!GO:0051427;hormone receptor binding;1.01326112359948e-06!GO:0005819;spindle;1.13469351971991e-06!GO:0005813;centrosome;1.14600986407513e-06!GO:0045449;regulation of transcription;1.21936300942853e-06!GO:0009259;ribonucleotide metabolic process;1.4754058642018e-06!GO:0019829;cation-transporting ATPase activity;1.49524647669295e-06!GO:0051188;cofactor biosynthetic process;1.59359299614167e-06!GO:0005768;endosome;1.73629698498904e-06!GO:0003724;RNA helicase activity;1.80637982779573e-06!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.9064291226729e-06!GO:0031497;chromatin assembly;2.05771880102285e-06!GO:0035257;nuclear hormone receptor binding;2.12316741713412e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.42416909572635e-06!GO:0006334;nucleosome assembly;2.53932694353908e-06!GO:0000245;spliceosome assembly;2.59479731811059e-06!GO:0005839;proteasome core complex (sensu Eukaryota);2.79147728996903e-06!GO:0045893;positive regulation of transcription, DNA-dependent;4.3343794696518e-06!GO:0006163;purine nucleotide metabolic process;4.35862451727401e-06!GO:0005793;ER-Golgi intermediate compartment;4.42846923636167e-06!GO:0042175;nuclear envelope-endoplasmic reticulum network;4.89854707688917e-06!GO:0045941;positive regulation of transcription;5.50197281318067e-06!GO:0009260;ribonucleotide biosynthetic process;5.82055028116438e-06!GO:0005815;microtubule organizing center;7.20457498472988e-06!GO:0009056;catabolic process;7.58713159466713e-06!GO:0006355;regulation of transcription, DNA-dependent;7.86322093595023e-06!GO:0006754;ATP biosynthetic process;8.12919935794524e-06!GO:0006753;nucleoside phosphate metabolic process;8.12919935794524e-06!GO:0048475;coated membrane;8.12919935794524e-06!GO:0030117;membrane coat;8.12919935794524e-06!GO:0016787;hydrolase activity;8.17440425544971e-06!GO:0005762;mitochondrial large ribosomal subunit;8.59972118901063e-06!GO:0000315;organellar large ribosomal subunit;8.59972118901063e-06!GO:0005789;endoplasmic reticulum membrane;9.70747076407964e-06!GO:0015078;hydrogen ion transmembrane transporter activity;9.93993301131277e-06!GO:0003682;chromatin binding;9.9454225200019e-06!GO:0003702;RNA polymerase II transcription factor activity;1.03703547930925e-05!GO:0009967;positive regulation of signal transduction;1.05011105106642e-05!GO:0006164;purine nucleotide biosynthetic process;1.05561791473671e-05!GO:0009150;purine ribonucleotide metabolic process;1.14684389197532e-05!GO:0046034;ATP metabolic process;1.15343385062688e-05!GO:0009141;nucleoside triphosphate metabolic process;1.25423376277467e-05!GO:0009108;coenzyme biosynthetic process;1.28839875403505e-05!GO:0030532;small nuclear ribonucleoprotein complex;1.29433502561099e-05!GO:0003924;GTPase activity;1.30946443516565e-05!GO:0004298;threonine endopeptidase activity;1.31082411941945e-05!GO:0006888;ER to Golgi vesicle-mediated transport;1.37088466299668e-05!GO:0005657;replication fork;1.80822520724125e-05!GO:0009199;ribonucleoside triphosphate metabolic process;1.84908551108642e-05!GO:0051168;nuclear export;1.85834155054891e-05!GO:0048518;positive regulation of biological process;1.92067811605132e-05!GO:0006950;response to stress;1.93756374488205e-05!GO:0009142;nucleoside triphosphate biosynthetic process;1.96261411779306e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.96261411779306e-05!GO:0003677;DNA binding;2.06512714787484e-05!GO:0045786;negative regulation of progression through cell cycle;2.07015298875568e-05!GO:0016469;proton-transporting two-sector ATPase complex;2.07147761572577e-05!GO:0009060;aerobic respiration;2.27514359701437e-05!GO:0030120;vesicle coat;2.29893234909431e-05!GO:0030662;coated vesicle membrane;2.29893234909431e-05!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.4305750510624e-05!GO:0009144;purine nucleoside triphosphate metabolic process;2.4305750510624e-05!GO:0043623;cellular protein complex assembly;2.47186969494606e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;2.59807603938708e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;2.59807603938708e-05!GO:0009152;purine ribonucleotide biosynthetic process;2.74460563159534e-05!GO:0008033;tRNA processing;2.84425454450486e-05!GO:0006752;group transfer coenzyme metabolic process;2.88742069544458e-05!GO:0051329;interphase of mitotic cell cycle;3.6342045708705e-05!GO:0016363;nuclear matrix;4.16296787821055e-05!GO:0044452;nucleolar part;4.34869393335496e-05!GO:0006402;mRNA catabolic process;4.53447123938825e-05!GO:0006302;double-strand break repair;4.54523077127962e-05!GO:0000151;ubiquitin ligase complex;4.71242754931656e-05!GO:0008186;RNA-dependent ATPase activity;4.73938330836654e-05!GO:0007243;protein kinase cascade;5.05020182274183e-05!GO:0045333;cellular respiration;5.25485513115056e-05!GO:0006613;cotranslational protein targeting to membrane;5.42806775120389e-05!GO:0003690;double-stranded DNA binding;5.81101168695587e-05!GO:0045892;negative regulation of transcription, DNA-dependent;6.14581917890161e-05!GO:0045259;proton-transporting ATP synthase complex;6.33142299121351e-05!GO:0006401;RNA catabolic process;6.53742947351686e-05!GO:0051052;regulation of DNA metabolic process;6.80580810413929e-05!GO:0007051;spindle organization and biogenesis;7.31861019901719e-05!GO:0000775;chromosome, pericentric region;8.14627534632893e-05!GO:0003899;DNA-directed RNA polymerase activity;8.82136923859018e-05!GO:0006793;phosphorus metabolic process;0.000100542075552494!GO:0006796;phosphate metabolic process;0.000100542075552494!GO:0051325;interphase;0.000111596190370656!GO:0000314;organellar small ribosomal subunit;0.000122105539110529!GO:0005763;mitochondrial small ribosomal subunit;0.000122105539110529!GO:0042802;identical protein binding;0.000132348958447076!GO:0004004;ATP-dependent RNA helicase activity;0.000156568232390868!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.000170960206190653!GO:0043021;ribonucleoprotein binding;0.000172874878987954!GO:0065009;regulation of a molecular function;0.000192376208736035!GO:0031252;leading edge;0.000212197338734671!GO:0005769;early endosome;0.000214629697146672!GO:0019899;enzyme binding;0.000229557282786468!GO:0044431;Golgi apparatus part;0.000233241359198761!GO:0006612;protein targeting to membrane;0.000257219544421821!GO:0003729;mRNA binding;0.00027994684749441!GO:0008094;DNA-dependent ATPase activity;0.000298885809103078!GO:0032508;DNA duplex unwinding;0.000345173128154796!GO:0032392;DNA geometric change;0.000345173128154796!GO:0030880;RNA polymerase complex;0.000366112490759654!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000378856129132286!GO:0044440;endosomal part;0.000396020575897283!GO:0010008;endosome membrane;0.000396020575897283!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000498404781129802!GO:0005525;GTP binding;0.00054674744172456!GO:0005770;late endosome;0.000599121874361474!GO:0016740;transferase activity;0.000638224754182338!GO:0000049;tRNA binding;0.000638224754182338!GO:0016251;general RNA polymerase II transcription factor activity;0.000640303406291279!GO:0009893;positive regulation of metabolic process;0.000675530386195255!GO:0048471;perinuclear region of cytoplasm;0.000712656697723678!GO:0004527;exonuclease activity;0.00074666783758909!GO:0006352;transcription initiation;0.000796745750702774!GO:0016310;phosphorylation;0.000848451147007663!GO:0005048;signal sequence binding;0.000848451147007663!GO:0006268;DNA unwinding during replication;0.000852239656116311!GO:0043065;positive regulation of apoptosis;0.000881616464524487!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000910958772914745!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.000930429655924983!GO:0000428;DNA-directed RNA polymerase complex;0.000930429655924983!GO:0006099;tricarboxylic acid cycle;0.000934078982920342!GO:0046356;acetyl-CoA catabolic process;0.000934078982920342!GO:0043681;protein import into mitochondrion;0.00098453755316361!GO:0031988;membrane-bound vesicle;0.00118451692254396!GO:0048468;cell development;0.00120349071526932!GO:0043068;positive regulation of programmed cell death;0.00127962170014476!GO:0007088;regulation of mitosis;0.00130301759620856!GO:0008654;phospholipid biosynthetic process;0.00131256287752849!GO:0008632;apoptotic program;0.00132304657847378!GO:0045454;cell redox homeostasis;0.00134773501035643!GO:0051252;regulation of RNA metabolic process;0.00134844656271108!GO:0005773;vacuole;0.00139994272996886!GO:0008139;nuclear localization sequence binding;0.00140786119961685!GO:0009117;nucleotide metabolic process;0.00148600813590739!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00157494568109493!GO:0042770;DNA damage response, signal transduction;0.00163287087226928!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00163287087226928!GO:0016023;cytoplasmic membrane-bound vesicle;0.00168434771354982!GO:0007264;small GTPase mediated signal transduction;0.0016880960012637!GO:0008250;oligosaccharyl transferase complex;0.00173523745611443!GO:0006839;mitochondrial transport;0.00177587934101364!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00180282892957866!GO:0000075;cell cycle checkpoint;0.00185400062833897!GO:0000786;nucleosome;0.00187531726575445!GO:0051789;response to protein stimulus;0.00189050498258672!GO:0006986;response to unfolded protein;0.00189050498258672!GO:0005885;Arp2/3 protein complex;0.00195986816364523!GO:0006310;DNA recombination;0.00197690923435771!GO:0006084;acetyl-CoA metabolic process;0.00202524497526556!GO:0006405;RNA export from nucleus;0.00204331169331139!GO:0031325;positive regulation of cellular metabolic process;0.00206353127472022!GO:0009109;coenzyme catabolic process;0.00209674521106676!GO:0030867;rough endoplasmic reticulum membrane;0.00214996353882706!GO:0051101;regulation of DNA binding;0.0021905810717589!GO:0005788;endoplasmic reticulum lumen;0.0021905810717589!GO:0006417;regulation of translation;0.00233596042165833!GO:0004518;nuclease activity;0.00234942157747425!GO:0051187;cofactor catabolic process;0.00243967823658298!GO:0032984;macromolecular complex disassembly;0.00245291687775777!GO:0046966;thyroid hormone receptor binding;0.00256694434813636!GO:0030118;clathrin coat;0.00268802511319923!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.00272964190922506!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00301303925991302!GO:0007052;mitotic spindle organization and biogenesis;0.0030294609301519!GO:0001726;ruffle;0.00305030379955822!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00308170590996019!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00308170590996019!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00308170590996019!GO:0031072;heat shock protein binding;0.00315634305462738!GO:0003678;DNA helicase activity;0.00316617265269142!GO:0006607;NLS-bearing substrate import into nucleus;0.00335766510078237!GO:0007010;cytoskeleton organization and biogenesis;0.00343845177542864!GO:0000139;Golgi membrane;0.00360634609955778!GO:0035258;steroid hormone receptor binding;0.00360634609955778!GO:0043488;regulation of mRNA stability;0.00362995706529428!GO:0043487;regulation of RNA stability;0.00362995706529428!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00364868703023797!GO:0006383;transcription from RNA polymerase III promoter;0.00367125983055521!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00369308474553347!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00370634177583964!GO:0000776;kinetochore;0.00374633486426933!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.00387011486755929!GO:0006626;protein targeting to mitochondrion;0.00396611543653776!GO:0043624;cellular protein complex disassembly;0.00406376822197139!GO:0045944;positive regulation of transcription from RNA polymerase II promoter;0.00406580191667121!GO:0009615;response to virus;0.00416410764336227!GO:0031982;vesicle;0.00416410764336227!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00421102367570977!GO:0051098;regulation of binding;0.00443785695624956!GO:0051087;chaperone binding;0.00445254515562386!GO:0006275;regulation of DNA replication;0.00450692827201177!GO:0003684;damaged DNA binding;0.00455317415288049!GO:0000323;lytic vacuole;0.00456503380891857!GO:0005764;lysosome;0.00456503380891857!GO:0048500;signal recognition particle;0.0046372128863757!GO:0032561;guanyl ribonucleotide binding;0.00473633076127941!GO:0019001;guanyl nucleotide binding;0.00473633076127941!GO:0030521;androgen receptor signaling pathway;0.00473633076127941!GO:0043241;protein complex disassembly;0.00473633076127941!GO:0006289;nucleotide-excision repair;0.00482513165964728!GO:0019843;rRNA binding;0.00491443250802236!GO:0005669;transcription factor TFIID complex;0.00491472179259776!GO:0005798;Golgi-associated vesicle;0.00506586427617217!GO:0006338;chromatin remodeling;0.00543684886124796!GO:0008408;3'-5' exonuclease activity;0.00545130785262004!GO:0008312;7S RNA binding;0.00546544306427269!GO:0007059;chromosome segregation;0.00548518823872481!GO:0003746;translation elongation factor activity;0.00553433880693793!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00589946930294294!GO:0004576;oligosaccharyl transferase activity;0.00589946930294294!GO:0000178;exosome (RNase complex);0.00596542022118473!GO:0009116;nucleoside metabolic process;0.0060227077275981!GO:0033116;ER-Golgi intermediate compartment membrane;0.00607234406977552!GO:0006414;translational elongation;0.00607234406977552!GO:0008361;regulation of cell size;0.00612217578216381!GO:0030031;cell projection biogenesis;0.00627399206010637!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0064530010278573!GO:0006400;tRNA modification;0.00650969419329433!GO:0006611;protein export from nucleus;0.00654797977162305!GO:0009889;regulation of biosynthetic process;0.0065979598986976!GO:0031968;organelle outer membrane;0.00666597336315215!GO:0016584;nucleosome positioning;0.00683738061604171!GO:0030119;AP-type membrane coat adaptor complex;0.00697352380228385!GO:0031410;cytoplasmic vesicle;0.00699303295429057!GO:0008234;cysteine-type peptidase activity;0.00718326572062506!GO:0031326;regulation of cellular biosynthetic process;0.00746594113551239!GO:0030131;clathrin adaptor complex;0.00785091141928785!GO:0051920;peroxiredoxin activity;0.00785091141928785!GO:0005741;mitochondrial outer membrane;0.00805946505975505!GO:0030036;actin cytoskeleton organization and biogenesis;0.00818978980551621!GO:0046483;heterocycle metabolic process;0.00818978980551621!GO:0004532;exoribonuclease activity;0.00844081861025534!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.00844081861025534!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00859634720647031!GO:0009451;RNA modification;0.00893551586653326!GO:0008168;methyltransferase activity;0.00900995844242285!GO:0016197;endosome transport;0.00916094225192542!GO:0019867;outer membrane;0.00919501291620027!GO:0050790;regulation of catalytic activity;0.00943532361083402!GO:0018196;peptidyl-asparagine modification;0.00943532361083402!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00943532361083402!GO:0003725;double-stranded RNA binding;0.00944843312922209!GO:0000725;recombinational repair;0.0095154913885537!GO:0000724;double-strand break repair via homologous recombination;0.0095154913885537!GO:0022411;cellular component disassembly;0.0096319663897439!GO:0030518;steroid hormone receptor signaling pathway;0.00968204123585297!GO:0000792;heterochromatin;0.00968204123585297!GO:0016741;transferase activity, transferring one-carbon groups;0.00973230522599598!GO:0008629;induction of apoptosis by intracellular signals;0.00973230522599598!GO:0040029;regulation of gene expression, epigenetic;0.0103071456484891!GO:0005874;microtubule;0.0103382440889742!GO:0006354;RNA elongation;0.0104265801366154!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.010564458123139!GO:0032200;telomere organization and biogenesis;0.0108001866402074!GO:0000723;telomere maintenance;0.0108001866402074!GO:0005856;cytoskeleton;0.0109882694057099!GO:0000082;G1/S transition of mitotic cell cycle;0.0110521549755076!GO:0042393;histone binding;0.0110848763269823!GO:0016859;cis-trans isomerase activity;0.011214020913254!GO:0016853;isomerase activity;0.0116081906310257!GO:0016049;cell growth;0.0116081906310257!GO:0046822;regulation of nucleocytoplasmic transport;0.011611791151181!GO:0000922;spindle pole;0.0117562447663019!GO:0005905;coated pit;0.0118006157943248!GO:0031124;mRNA 3'-end processing;0.0118200656403816!GO:0031625;ubiquitin protein ligase binding;0.0123583968051302!GO:0007004;telomere maintenance via telomerase;0.0123613101062091!GO:0006376;mRNA splice site selection;0.0127397655017959!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0127397655017959!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0128193955762734!GO:0045047;protein targeting to ER;0.0128193955762734!GO:0006891;intra-Golgi vesicle-mediated transport;0.0128762659220296!GO:0051338;regulation of transferase activity;0.0130579609536605!GO:0000059;protein import into nucleus, docking;0.0131115816181592!GO:0007006;mitochondrial membrane organization and biogenesis;0.0133279251792674!GO:0007093;mitotic cell cycle checkpoint;0.0138916481053588!GO:0005791;rough endoplasmic reticulum;0.0140228813306057!GO:0005684;U2-dependent spliceosome;0.0142859160858461!GO:0031570;DNA integrity checkpoint;0.0143572683426052!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.014994504930268!GO:0033673;negative regulation of kinase activity;0.0150370570012884!GO:0006469;negative regulation of protein kinase activity;0.0150370570012884!GO:0043022;ribosome binding;0.0150868168077918!GO:0001558;regulation of cell growth;0.0153600175871195!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0154023922061579!GO:0003711;transcription elongation regulator activity;0.0154220228996413!GO:0022890;inorganic cation transmembrane transporter activity;0.0159279601842673!GO:0051053;negative regulation of DNA metabolic process;0.0161366504881294!GO:0016272;prefoldin complex;0.0161627172449063!GO:0009112;nucleobase metabolic process;0.0161627172449063!GO:0030134;ER to Golgi transport vesicle;0.0164131376815896!GO:0006270;DNA replication initiation;0.0166423036545774!GO:0051540;metal cluster binding;0.0166812838427413!GO:0051536;iron-sulfur cluster binding;0.0166812838427413!GO:0046489;phosphoinositide biosynthetic process;0.0169210061978042!GO:0043414;biopolymer methylation;0.0172934984952275!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.0173151246588279!GO:0015631;tubulin binding;0.0174012920370443!GO:0030132;clathrin coat of coated pit;0.0175685004774165!GO:0000781;chromosome, telomeric region;0.0175699517027091!GO:0030663;COPI coated vesicle membrane;0.0175717344444287!GO:0030126;COPI vesicle coat;0.0175717344444287!GO:0006360;transcription from RNA polymerase I promoter;0.0177325751680763!GO:0008180;signalosome;0.0180001834982267!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0188804185307141!GO:0007265;Ras protein signal transduction;0.0189441809687177!GO:0008637;apoptotic mitochondrial changes;0.0197861288420194!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0199068725330263!GO:0005876;spindle microtubule;0.0207693117734708!GO:0006917;induction of apoptosis;0.0209678866877348!GO:0006595;polyamine metabolic process;0.0212321293752066!GO:0050681;androgen receptor binding;0.0214454848478235!GO:0043549;regulation of kinase activity;0.0222350995998328!GO:0046983;protein dimerization activity;0.0225044092651036!GO:0051348;negative regulation of transferase activity;0.0225615846931204!GO:0048144;fibroblast proliferation;0.0225651890207174!GO:0048145;regulation of fibroblast proliferation;0.0225651890207174!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.022725786871774!GO:0032259;methylation;0.022725786871774!GO:0016281;eukaryotic translation initiation factor 4F complex;0.022725786871774!GO:0048487;beta-tubulin binding;0.0229136483885831!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.023243287413719!GO:0015399;primary active transmembrane transporter activity;0.023243287413719!GO:0048146;positive regulation of fibroblast proliferation;0.0233258142900878!GO:0005832;chaperonin-containing T-complex;0.0233619716018088!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0239840695294862!GO:0030137;COPI-coated vesicle;0.0241145187128764!GO:0042585;germinal vesicle;0.0241677175579996!GO:0030127;COPII vesicle coat;0.0243223062303079!GO:0012507;ER to Golgi transport vesicle membrane;0.0243223062303079!GO:0001836;release of cytochrome c from mitochondria;0.02441524429582!GO:0000175;3'-5'-exoribonuclease activity;0.0246260750503014!GO:0043596;nuclear replication fork;0.0248152050142649!GO:0006378;mRNA polyadenylation;0.0251611179311189!GO:0007030;Golgi organization and biogenesis;0.0253450799704673!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0254158766127412!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0254158766127412!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0255460124369145!GO:0046474;glycerophospholipid biosynthetic process;0.0256955332816245!GO:0006979;response to oxidative stress;0.0262002035038383!GO:0012502;induction of programmed cell death;0.026308924330184!GO:0022415;viral reproductive process;0.0272815596450765!GO:0008538;proteasome activator activity;0.0276984621925283!GO:0008601;protein phosphatase type 2A regulator activity;0.0280868658163728!GO:0008270;zinc ion binding;0.0284037445545878!GO:0015992;proton transport;0.0284383862895095!GO:0051128;regulation of cellular component organization and biogenesis;0.0287040064470413!GO:0006984;ER-nuclear signaling pathway;0.0287040064470413!GO:0031123;RNA 3'-end processing;0.0292304608639698!GO:0007266;Rho protein signal transduction;0.0293027570374645!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.02983140353278!GO:0005149;interleukin-1 receptor binding;0.02983140353278!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0300148346323591!GO:0006818;hydrogen transport;0.0301480373548659!GO:0030658;transport vesicle membrane;0.030287855736689!GO:0008022;protein C-terminus binding;0.0305763512699191!GO:0031529;ruffle organization and biogenesis;0.0306768262885876!GO:0030032;lamellipodium biogenesis;0.0308101570978394!GO:0019783;small conjugating protein-specific protease activity;0.0319619213700478!GO:0030029;actin filament-based process;0.033284889038996!GO:0046467;membrane lipid biosynthetic process;0.0346275039265569!GO:0005862;muscle thin filament tropomyosin;0.0346755660363881!GO:0008283;cell proliferation;0.0347444674618887!GO:0008156;negative regulation of DNA replication;0.0349904456071725!GO:0000077;DNA damage checkpoint;0.03509882290905!GO:0047485;protein N-terminus binding;0.0356533815075886!GO:0000339;RNA cap binding;0.0362948723770347!GO:0030384;phosphoinositide metabolic process;0.0364449337433957!GO:0004540;ribonuclease activity;0.0365521731907798!GO:0006284;base-excision repair;0.036559825804897!GO:0045859;regulation of protein kinase activity;0.0366756131431088!GO:0008426;protein kinase C inhibitor activity;0.0373181135422332!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.03755500380025!GO:0015002;heme-copper terminal oxidase activity;0.03755500380025!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.03755500380025!GO:0004129;cytochrome-c oxidase activity;0.03755500380025!GO:0006144;purine base metabolic process;0.0376804021217927!GO:0004674;protein serine/threonine kinase activity;0.0377826836341556!GO:0030522;intracellular receptor-mediated signaling pathway;0.0379805113567508!GO:0016044;membrane organization and biogenesis;0.0387927421211707!GO:0006520;amino acid metabolic process;0.0397931471192166!GO:0043331;response to dsRNA;0.0400738605695004!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0401083313189792!GO:0030133;transport vesicle;0.0403609470119713!GO:0016791;phosphoric monoester hydrolase activity;0.0409458072098254!GO:0009165;nucleotide biosynthetic process;0.0413529629467317!GO:0004843;ubiquitin-specific protease activity;0.0417825126972797!GO:0000086;G2/M transition of mitotic cell cycle;0.0423426878596667!GO:0006730;one-carbon compound metabolic process;0.0428603489237541!GO:0005637;nuclear inner membrane;0.0431869294649521!GO:0007050;cell cycle arrest;0.0431948964926213!GO:0032507;maintenance of cellular protein localization;0.0435426592869404!GO:0030224;monocyte differentiation;0.0437927595614243!GO:0005062;hematopoietin/interferon-class (D200-domain) cytokine receptor signal transducer activity;0.0442183624560644!GO:0008276;protein methyltransferase activity;0.0444868833230438!GO:0000209;protein polyubiquitination;0.0449396273146348!GO:0051287;NAD binding;0.0467266255206787!GO:0008092;cytoskeletal protein binding;0.0472753622847187!GO:0017166;vinculin binding;0.0472753622847187!GO:0001832;blastocyst growth;0.0490115919128893!GO:0009119;ribonucleoside metabolic process;0.0496216778958547 | |||
|sample_id=10412 | |||
|sample_note=machine failed, remainder reloaded, low amount | |||
|sample_sex=female | |||
|sample_species=Human (Homo sapiens) | |||
|sample_strain= | |||
|sample_tissue=hair follicle | |||
|top_motifs=TBX4,5:1.91253225193;IRF7:1.75219240991;ZEB1:1.71246957667;bHLH_family:1.67568738597;ADNP_IRX_SIX_ZHX:1.6661465009;SNAI1..3:1.62316361665;VSX1,2:1.44428552858;RBPJ:1.43296953676;TP53:1.34698100844;POU1F1:1.31146039853;ZNF148:1.12105321735;ELK1,4_GABP{A,B1}:1.09596597469;PITX1..3:1.0200111651;CEBPA,B_DDIT3:0.963425872828;TEAD1:0.955326669572;FOXN1:0.939848064163;PDX1:0.906759898973;MYOD1:0.89709044638;YY1:0.888302878667;E2F1..5:0.853275695389;POU2F1..3:0.818131107722;NKX6-1,2:0.795047247526;IRF1,2:0.781558737926;TFDP1:0.781308030842;EP300:0.777544260306;TFAP2{A,C}:0.774250949299;FOXQ1:0.769129690233;FOXO1,3,4:0.764816328056;FOS_FOS{B,L1}_JUN{B,D}:0.750393212505;NR6A1:0.727781101561;CDC5L:0.68757531595;ATF4:0.658341121704;FOSL2:0.614470306447;STAT5{A,B}:0.569896030907;BACH2:0.560595526512;FOXP1:0.547337182597;NANOG:0.538126463099;FOXA2:0.482507762099;NKX2-1,4:0.477988900231;FOXM1:0.45806541932;AHR_ARNT_ARNT2:0.450345296263;ATF2:0.413802347627;FOX{I1,J2}:0.386988571861;OCT4_SOX2{dimer}:0.385844608208;HLF:0.361920995425;ZBTB6:0.35055378354;NFY{A,B,C}:0.349650078518;EN1,2:0.347411360972;IKZF1:0.345699568356;RORA:0.341639657569;PAX2:0.337810107251;NKX2-3_NKX2-5:0.336150091197;TLX1..3_NFIC{dimer}:0.333971189971;NFE2:0.328386530729;GLI1..3:0.327088018264;HIF1A:0.308760451454;SOX2:0.305750507391;FOX{D1,D2}:0.304966585674;FOXD3:0.301371255534;MED-1{core}:0.301103399101;HBP1_HMGB_SSRP1_UBTF:0.295794993093;POU5F1:0.266014280055;GFI1B:0.226363045083;MYBL2:0.216508707902;POU6F1:0.213890649499;ATF5_CREB3:0.185839039622;TBP:0.185331084993;NFKB1_REL_RELA:0.169347517136;HOXA9_MEIS1:0.168922840842;NKX2-2,8:0.142411989154;GFI1:0.142080546681;ELF1,2,4:0.131601399728;SMAD1..7,9:0.117624851162;CRX:0.0965551621785;ZNF143:0.0932391214643;PRRX1,2:0.0664940182506;HAND1,2:0.0630620766731;SOX17:0.0342595920785;HOX{A6,A7,B6,B7}:0.00608878628209;LMO2:-0.000531745704037;HMGA1,2:-0.00503160211274;ONECUT1,2:-0.0171709595852;STAT2,4,6:-0.0308842720146;LHX3,4:-0.0414698427755;HNF1A:-0.05261772954;GTF2A1,2:-0.0537746802274;SOX{8,9,10}:-0.0669521429432;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0739449304173;GCM1,2:-0.084155872924;MYB:-0.0927481168502;GTF2I:-0.128914429571;BPTF:-0.136996542399;ETS1,2:-0.13739051241;DMAP1_NCOR{1,2}_SMARC:-0.139206549396;STAT1,3:-0.154008923131;NFIL3:-0.161273298201;ZNF238:-0.165272357876;ZNF384:-0.170255854468;ZFP161:-0.173280332965;PAX8:-0.178766050394;AIRE:-0.179492771098;PBX1:-0.183275514927;NFIX:-0.190967040297;EBF1:-0.209172297079;FOX{F1,F2,J1}:-0.222540627991;PRDM1:-0.223268095024;MTF1:-0.225229113823;PAX1,9:-0.236913326506;MTE{core}:-0.244977998816;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.253518642655;RFX1:-0.256470054808;MAZ:-0.259322041621;MEF2{A,B,C,D}:-0.259650132208;LEF1_TCF7_TCF7L1,2:-0.263851704592;RUNX1..3:-0.28338621513;RFX2..5_RFXANK_RFXAP:-0.286489895557;NRF1:-0.288016881195;ARID5B:-0.289471802135;JUN:-0.289605719331;SPIB:-0.30099569609;GATA6:-0.308284420364;ZNF423:-0.30976157073;DBP:-0.310068669807;MYFfamily:-0.31569036818;PPARG:-0.321765717345;SREBF1,2:-0.331591827585;PAX4:-0.35281905292;NFE2L2:-0.359993396434;TFAP2B:-0.372704639306;TOPORS:-0.380431495394;ESRRA:-0.393497017391;NKX3-2:-0.403613985216;SPI1:-0.409755407786;HOX{A5,B5}:-0.415096586739;TLX2:-0.422619191548;ZBTB16:-0.427579773013;CUX2:-0.427888562782;MZF1:-0.428638594796;CREB1:-0.433343718892;GZF1:-0.447786686621;NR3C1:-0.448280944303;ATF6:-0.457072283466;HOX{A4,D4}:-0.462345156172;FOXL1:-0.464543459366;HNF4A_NR2F1,2:-0.473511502011;PAX3,7:-0.478522897444;HES1:-0.490798852871;NKX3-1:-0.498735938845;RREB1:-0.507692263037;XCPE1{core}:-0.511013681696;NR5A1,2:-0.513340637087;SOX5:-0.513595082782;REST:-0.520041433443;BREu{core}:-0.522078433609;TFCP2:-0.529006153052;HSF1,2:-0.5458990035;T:-0.563812627281;AR:-0.571014124332;HIC1:-0.576385489892;SRF:-0.587205368407;SP1:-0.587953564229;ESR1:-0.599378777212;ALX1:-0.635753969863;MAFB:-0.680563747821;TEF:-0.707558403451;IKZF2:-0.711182346685;GATA4:-0.82553294186;NFATC1..3:-0.828792315594;NHLH1,2:-0.831838060831;EGR1..3:-0.842159275805;TFAP4:-0.844683189479;TGIF1:-0.853987567323;PATZ1:-0.85546605466;UFEwm:-0.858625774439;NR1H4:-0.867846288489;CDX1,2,4:-0.876731284768;KLF4:-0.913699078791;PAX6:-0.921301729475;ALX4:-0.926351751786;FOXP3:-0.979365168625;RXR{A,B,G}:-1.06751927158;TAL1_TCF{3,4,12}:-1.11285435545;ZIC1..3:-1.11941649136;HMX1:-1.25587391238;NFE2L1:-1.305809194;EVI1:-1.32118949944;POU3F1..4:-1.32599303148;XBP1:-1.36020802472;SPZ1:-1.42368861898;RXRA_VDR{dimer}:-1.42731028826;PAX5:-1.54227010165;NANOG{mouse}:-2.07037368015 | |||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10412-106B7;search_select_hide=table117:FF:10412-106B7 | |||
}} | }} |
Latest revision as of 13:59, 3 June 2020
Name: | malignant trichilemmal cyst cell line:DJM-1 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs10730 |
Sample type: | cell lines |
Genomic View: | UCSC |
RefEX: | Specific genes |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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HumanCAGEScan Download raw sequence, BAM & CTSS | ||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10730
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10730
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.608 |
10 | 10 | 0.553 |
100 | 100 | 0.417 |
101 | 101 | 0.428 |
102 | 102 | 0.362 |
103 | 103 | 0.92 |
104 | 104 | 0.341 |
105 | 105 | 0.3 |
106 | 106 | 0.305 |
107 | 107 | 0.253 |
108 | 108 | 0.881 |
109 | 109 | 0.266 |
11 | 11 | 0.179 |
110 | 110 | 0.688 |
111 | 111 | 0.403 |
112 | 112 | 0.301 |
113 | 113 | 0.297 |
114 | 114 | 0.206 |
115 | 115 | 0.708 |
116 | 116 | 0.102 |
117 | 117 | 0.923 |
118 | 118 | 0.434 |
119 | 119 | 0.786 |
12 | 12 | 0.355 |
120 | 120 | 0.855 |
121 | 121 | 0.836 |
122 | 122 | 0.328 |
123 | 123 | 0.0621 |
124 | 124 | 0.858 |
125 | 125 | 0.382 |
126 | 126 | 0.847 |
127 | 127 | 0.62 |
128 | 128 | 0.842 |
129 | 129 | 0.225 |
13 | 13 | 0.00269 |
130 | 130 | 0.256 |
131 | 131 | 0.64 |
132 | 132 | 0.998 |
133 | 133 | 0.0219 |
134 | 134 | 0.127 |
135 | 135 | 0.717 |
136 | 136 | 0.958 |
137 | 137 | 0.233 |
138 | 138 | 0.63 |
139 | 139 | 0.101 |
14 | 14 | 0.97 |
140 | 140 | 0.629 |
141 | 141 | 0.426 |
142 | 142 | 0.928 |
143 | 143 | 0.19 |
144 | 144 | 0.0771 |
145 | 145 | 0.588 |
146 | 146 | 0.277 |
147 | 147 | 0.682 |
148 | 148 | 0.899 |
149 | 149 | 0.25 |
15 | 15 | 0.845 |
150 | 150 | 0.203 |
151 | 151 | 0.235 |
152 | 152 | 0.616 |
153 | 153 | 0.977 |
154 | 154 | 0.88 |
155 | 155 | 0.789 |
156 | 156 | 0.652 |
157 | 157 | 0.855 |
158 | 158 | 0.65 |
159 | 159 | 0.317 |
16 | 16 | 0.999 |
160 | 160 | 0.605 |
161 | 161 | 0.25 |
162 | 162 | 0.111 |
163 | 163 | 0.465 |
164 | 164 | 0.498 |
165 | 165 | 0.835 |
166 | 166 | 0.727 |
167 | 167 | 0.354 |
168 | 168 | 0.729 |
169 | 169 | 0.674 |
17 | 17 | 0.342 |
18 | 18 | 0.454 |
19 | 19 | 0.0863 |
2 | 2 | 0.702 |
20 | 20 | 0.879 |
21 | 21 | 0.645 |
22 | 22 | 0.56 |
23 | 23 | 0.201 |
24 | 24 | 0.134 |
25 | 25 | 0.625 |
26 | 26 | 0.198 |
27 | 27 | 0.925 |
28 | 28 | 0.222 |
29 | 29 | 0.104 |
3 | 3 | 0.827 |
30 | 30 | 0.351 |
31 | 31 | 0.221 |
32 | 32 | 0.00144 |
33 | 33 | 0.213 |
34 | 34 | 0.185 |
35 | 35 | 0.413 |
36 | 36 | 0.0962 |
37 | 37 | 0.715 |
38 | 38 | 0.42 |
39 | 39 | 0.856 |
4 | 4 | 0.801 |
40 | 40 | 0.336 |
41 | 41 | 0.226 |
42 | 42 | 0.27 |
43 | 43 | 0.904 |
44 | 44 | 0.0791 |
45 | 45 | 0.13 |
46 | 46 | 0.994 |
47 | 47 | 0.863 |
48 | 48 | 0.828 |
49 | 49 | 0.828 |
5 | 5 | 0.776 |
50 | 50 | 0.274 |
51 | 51 | 0.308 |
52 | 52 | 0.207 |
53 | 53 | 0.407 |
54 | 54 | 0.221 |
55 | 55 | 0.328 |
56 | 56 | 0.307 |
57 | 57 | 0.111 |
58 | 58 | 0.465 |
59 | 59 | 0.122 |
6 | 6 | 0.84 |
60 | 60 | 0.227 |
61 | 61 | 0.701 |
62 | 62 | 0.9 |
63 | 63 | 0.319 |
64 | 64 | 0.841 |
65 | 65 | 0.775 |
66 | 66 | 0.00216 |
67 | 67 | 0.465 |
68 | 68 | 0.0284 |
69 | 69 | 0.468 |
7 | 7 | 0.205 |
70 | 70 | 0.108 |
71 | 71 | 0.545 |
72 | 72 | 0.814 |
73 | 73 | 0.945 |
74 | 74 | 0.239 |
75 | 75 | 0.00716 |
76 | 76 | 0.776 |
77 | 77 | 0.283 |
78 | 78 | 0.0178 |
79 | 79 | 1.99766e-4 |
8 | 8 | 0.162 |
80 | 80 | 0.887 |
81 | 81 | 0.153 |
82 | 82 | 0.118 |
83 | 83 | 0.709 |
84 | 84 | 0.972 |
85 | 85 | 0.209 |
86 | 86 | 0.574 |
87 | 87 | 0.336 |
88 | 88 | 0.756 |
89 | 89 | 0.579 |
9 | 9 | 0.381 |
90 | 90 | 0.779 |
91 | 91 | 0.0358 |
92 | 92 | 0.992 |
93 | 93 | 0.998 |
94 | 94 | 0.741 |
95 | 95 | 0.879 |
96 | 96 | 0.305 |
97 | 97 | 0.277 |
98 | 98 | 0.713 |
99 | 99 | 0.998 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10730
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102024 squamous cell carcinoma cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000076 (squamous epithelial cell)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
1749 (squamous cell carcinoma)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0102024 (squamous cell carcinoma cell line sample)
0101120 (epithelial cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA