FF:10444-106F3: Difference between revisions
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{{f5samples | {{f5samples | ||
| | |CNhs11248= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession=CAGE@SAMD00005163 | ||
|HumanCAGEScanFiles=NCig10059;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/glioblastoma%2520cell%2520line%253aA172.NCig10059.10444-106F3.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/glioblastoma%2520cell%2520line%253aA172.NCig10059.10444-106F3.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/glioblastoma%2520cell%2520line%253aA172.NCig10059.10444-106F3.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/glioblastoma%2520cell%2520line%253aA172.NCig10059.10444-106F3.hg19.GCTATA.pairs.bed.gz | |||
|accession_numbers=CAGE;DRX007897;DRR008769;DRZ000194;DRZ001579;DRZ011544;DRZ012929!CAGE;DRX007898;DRR008770;DRZ000195;DRZ001580;DRZ011545;DRZ012930 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000955,UBERON:0004121,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0001017,UBERON:0001016 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0002319,CL:0000095,CL:0000243,CL:0000125,CL:0000255 | |||
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:3093 | |ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:3093 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0101530,FF:0100711,FF:0100255,FF:0100690,FF:0101531,FF:0100016 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr1:197886461..197886558,+!p1@LHX9!2.45!279.92!LHX9;;chr7:27205136..27205164,-!p1@HOXA9!1.87!72.80!HOXA9;;chr17:46682321..46682362,-!p1@HOXB6!1.74!54.18!HOXB6;;chr2:176969228..176969260,+!p1@HOXD11!1.65!43.41!HOXD11;;chr10:28034739..28034756,-!p1@MKX!1.59!37.76!MKX;;chr2:176969179..176969226,+!p2@HOXD11!1.53!32.53!HOXD11;;chr7:27205106..27205134,-!p2@HOXA9!1.39!23.54!HOXA9;;chr8:60031934..60031986,-!p6@TOX!1.35!21.55!TOX;;chr6:10415276..10415341,-!p2@TFAP2A!1.28!22.07!TFAP2A;;chr2:176969097..176969109,+!p3@HOXD11!1.28!17.99!HOXD11;;chr17:46667594..46667619,-!p1@HOXB3!1.27!17.78!HOXB3;;chr1:170632285..170632309,+!p1@PRRX1!1.24!18.72!PRRX1;;chr1:151032860..151032918,+!p1@MLLT11!1.21!178.24!MLLT11;;chr8:60031682..60031710,-!p2@TOX!1.21!24.58!TOX;;chr17:46692318..46692362,-!p5@HOXB8!1.21!15.06!HOXB8;;chr15:37392094..37392116,-!p6@MEIS2!1.20!18.31!MEIS2;;chr17:46692457..46692484,-!p2@HOXB8!1.20!14.96!HOXB8;;chr5:134369905..134369972,-!p1@PITX1!1.17!21.13!PITX1;;chr8:60031809..60031835,-!p4@TOX!1.16!17.15!TOX;;chr6:10412600..10412637,-!p1@TFAP2A!1.15!22.07!TFAP2A;;chr2:19558373..19558392,-!p1@OSR1!1.13!33.89!OSR1;;chr11:120107344..120107351,+!p1@POU2F3!1.13!15.27!POU2F3;;chr8:60031619..60031676,-!p1@TOX!1.12!26.57!TOX;;chr6:10412392..10412409,-!p4@TFAP2A!1.10!13.18!TFAP2A;;chr17:46675558..46675577,-!p2@HOXB6!1.10!11.51!HOXB6;;chr1:151032922..151032951,+!p2@MLLT11!1.09!19.04!MLLT11;;chrY:21906594..21906622,-!p1@KDM5D!1.07!10.77!KDM5D;;chr17:17726907..17726958,-!p2@SREBF1!1.06!65.80!SREBF1;;chr8:60031840..60031869,-!p5@TOX!1.06!10.36!TOX;;chr8:60031762..60031803,-!p3@TOX!1.05!14.96!TOX;;chr9:16705069..16705086,-!p3@BNC2!1.05!10.25!BNC2;;chr3:147127142..147127168,+!p1@ZIC1!1.03!9.62!ZIC1;;chr7:27212501..27212513,-!p5@HOXA10!1.02!9.52!HOXA10;;chr15:37392724..37392757,-!p1@MEIS2!1.00!42.15!MEIS2;;chr10:28032421..28032494,-!p2@MKX!1.00!9.00!MKX;;chr3:147127177..147127194,+!p2@ZIC1!0.99!8.79!ZIC1;;chr8:11561684..11561751,+!p1@GATA4!0.98!8.58!GATA4;;chr11:46299199..46299233,+!p1@CREB3L1!0.97!44.46!CREB3L1;;chr21:36421535..36421610,-!p2@RUNX1!0.97!30.23!RUNX1;;chr17:46692624..46692659,-!p3@HOXB8!0.97!8.37!HOXB8;;chr10:28034395..28034404,-!p9@MKX!0.97!8.37!MKX;;chr1:170633348..170633399,+!p2@PRRX1!0.96!11.30!PRRX1;;chr22:19748231..19748317,+!p1@TBX1!0.96!8.16!TBX1;;chr17:46690839..46690884,-!p1@HOXB8!0.96!8.16!HOXB8;;chr3:69915385..69915438,+!p3@MITF!0.95!7.85!MITF;;chr1:151032142..151032195,+!p5@MLLT11!0.94!15.17!MLLT11;;chr13:100634031..100634045,+!p1@ZIC2!0.94!7.64!ZIC2;;chr3:114343768..114343822,-!p1@ZBTB20!0.93!33.79!ZBTB20;;chr3:114343826..114343869,-!p4@ZBTB20!0.93!15.27!ZBTB20;;chr2:176969124..176969155,+!p5@HOXD11!0.91!7.11!HOXD11;;chr17:46692287..46692317,-!p7@HOXB8!0.91!7.11!HOXB8;;chr1:170633262..170633285,+!p3@PRRX1!0.90!8.05!PRRX1;;chr2:200323414..200323455,-!p1@SATB2!0.87!14.23!SATB2;;chr2:5832508..5832524,+!p1@SOX11!0.87!6.38!SOX11;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.86!66.00!GLIS2;;chr15:37392534..37392562,-!p10@MEIS2!0.85!6.69!MEIS2;;chr9:126774018..126774055,+!p1@LHX2!0.85!6.07!LHX2;;chr7:26191809..26191890,+!p1@NFE2L3!0.84!30.96!NFE2L3;;chr7:19157248..19157268,-!p1@TWIST1!0.84!17.47!TWIST1;;chr17:46622070..46622109,-!p1@HOXB2!0.84!13.91!HOXB2;;chr19:31840130..31840160,-!p2@TSHZ3!0.84!9.41!TSHZ3;;chr17:46622205..46622218,-!p3@HOXB2!0.84!7.01!HOXB2;;chr17:46667628..46667642,-!p2@HOXB3!0.84!5.86!HOXB3;;chr7:1577899..1577943,+!p3@MAFK!0.84!5.86!MAFK;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.84!5.86!HOXC5;;chr15:42749722..42749739,-!p2@ZFP106!0.82!10.46!ZFP106;;chr20:62680984..62680999,-!p1@SOX18!0.82!7.64!SOX18;;chr7:28220198..28220269,-!p2@JAZF1!0.81!52.41!JAZF1;;chr5:133450365..133450444,+!p1@TCF7!0.81!26.88!TCF7;;chr11:65667884..65667895,-!p2@FOSL1!0.81!22.59!FOSL1;;chrY:2803415..2803468,+!p1@ZFY!0.81!5.44!ZFY;;chr12:124873852..124873881,-!p3@NCOR2!0.80!34.73!NCOR2;;chr17:46622114..46622138,-!p4@HOXB2!0.79!8.16!HOXB2;;chr17:46688334..46688385,-!p1@HOXB7!0.79!7.74!HOXB7;;chr3:157823517..157823562,-!p1@SHOX2!0.79!5.65!SHOX2;;chr11:46299539..46299620,+!p2@CREB3L1!0.78!8.89!CREB3L1;;chr2:200322654..200322707,-!p2@SATB2!0.78!7.64!SATB2;;chr12:54380404..54380433,+!p3@HOXC10!0.77!4.92!HOXC10;;chr20:42295745..42295765,+!p1@MYBL2!0.76!85.25!MYBL2;;chr15:37392593..37392607,-!p13@MEIS2!0.76!5.86!MEIS2;;chr16:51185172..51185197,-!p1@SALL1!0.76!4.81!SALL1;;chr3:147111198..147111225,+!p4@ZIC1!0.76!4.81!ZIC1;;chr3:69915369..69915381,+!p4@MITF!0.76!4.71!MITF;;chr1:151032782..151032801,+!p4@MLLT11!0.75!9.94!MLLT11;;chr10:64134120..64134183,+!p1@ZNF365!0.75!5.65!ZNF365;;chr1:3569072..3569093,+!p1@TP73!0.75!4.60!TP73;;chr15:37392703..37392717,-!p8@MEIS2!0.74!6.69!MEIS2;;chr1:151032739..151032748,+!p6@MLLT11!0.74!5.86!MLLT11;;chr12:54332608..54332636,+!p1@HOXC13!0.74!4.50!HOXC13;;chr7:28725740..28725778,+!p1@CREB5!0.73!43.20!CREB5;;chr19:13134457..13134462,+!p5@NFIX!0.73!8.37!NFIX;;chr19:49864746..49864780,-!p2@TEAD2!0.73!6.28!TEAD2;;chr3:69811882..69811898,+!p6@MITF!0.73!4.39!MITF;;chr5:134369879..134369898,-!p2@PITX1!0.73!4.39!PITX1;;chr5:172662197..172662216,-!p1@NKX2-5!0.73!4.39!NKX2-5;;chr15:37391588..37391604,-!p11@MEIS2!0.72!5.65!MEIS2;;chr15:37392576..37392589,-!p12@MEIS2!0.72!5.23!MEIS2;;chr1:197886421..197886432,+!p2@LHX9!0.72!4.29!LHX9;;chr20:42295713..42295738,+!p2@MYBL2!0.71!27.20!MYBL2;;chr2:121493425..121493474,+!p1@GLI2!0.71!9.73!GLI2;;chr17:46687959..46688007,-!p2@HOXB7!0.71!5.96!HOXB7;;chr18:53068911..53068935,-!p4@TCF4!0.71!4.71!TCF4;;chr2:66662510..66662521,+!p6@MEIS1!0.71!4.08!MEIS1;;chr10:102505493..102505546,+!p2@PAX2!0.71!4.08!PAX2;;chr13:100634130..100634143,+!p3@ZIC2!0.71!4.08!ZIC2;;chr17:70117153..70117174,+!p1@SOX9!0.70!46.55!SOX9;;chr1:247171316..247171336,-!p3@ZNF695!0.70!6.28!ZNF695;;chr12:77459306..77459365,-!p1@E2F7!0.69!55.96!E2F7;;chr12:125002827..125002855,-!p5@NCOR2!0.69!5.86!NCOR2;;chr17:46622229..46622257,-!p6@HOXB2!0.69!4.71!HOXB2;;chr9:4300050..4300118,-!p1@GLIS3!0.68!27.82!GLIS3;;chr17:46692603..46692621,-!p6@HOXB8!0.68!3.77!HOXB8;;chr1:170632250..170632277,+!p7@PRRX1!0.67!3.66!PRRX1;;chr22:22874610..22874616,-!p1@ZNF280A!0.67!3.66!ZNF280A;;chr17:41277372..41277418,-!p1@BRCA1!0.66!14.75!BRCA1;;chr3:107244229..107244254,+!p3@BBX!0.66!6.38!BBX;;chr3:181429704..181429722,+!p1@SOX2!0.66!3.56!SOX2;;chr6:10412576..10412599,-!p5@TFAP2A!0.66!3.56!TFAP2A;;chr19:21264991..21265026,+!p1@ZNF714!0.65!26.57!ZNF714;;chr8:67525443..67525459,-!p2@MYBL1!0.65!5.54!MYBL1;;chr14:33408072..33408114,+!p2@NPAS3!0.65!4.18!NPAS3;;chr13:100623375..100623425,-!p1@ZIC5!0.65!3.45!ZIC5;;chr17:7590797..7590815,-!p1@TP53!0.64!172.39!TP53;;chr5:176738887..176738934,-!p1@MXD3!0.64!26.05!MXD3;;chr9:130954041..130954121,-!p2@CIZ1!0.64!16.84!CIZ1;;chr12:54393880..54393962,+!p1@HOXC9!0.64!3.35!HOXC9;;chr17:46667561..46667572,-!p4@HOXB3!0.64!3.35!HOXB3;;chr7:77428149..77428220,+!p1@PHTF2!0.63!39.33!PHTF2;;chr20:32274179..32274213,-!p1@E2F1!0.63!25.52!E2F1;;chr15:37392616..37392638,-!p2@MEIS2!0.63!11.82!MEIS2;;chr2:42721205..42721307,+!p4@MTA3!0.63!3.24!MTA3;;chr1:170632959..170632987,+!p4@PRRX1!0.62!3.56!PRRX1;;chr3:114343870..114343887,-!p9@ZBTB20!0.62!3.14!ZBTB20;;chr9:128509663..128509715,+!p1@PBX3!0.61!12.03!PBX3;;chr16:1429627..1429662,-!p2@UNKL!0.61!10.36!UNKL;;chr21:36259445..36259519,-!p4@RUNX1!0.61!9.83!RUNX1;;chr19:13134772..13134822,+!p2@NFIX!0.61!4.92!NFIX;;chr2:66662281..66662308,+!p1@MEIS1!0.60!11.92!MEIS1;;chr2:71127699..71127744,+!p1@VAX2!0.60!6.90!VAX2;;chr15:80696703..80696754,+!p1@ARNT2!0.60!4.18!ARNT2;;chr16:4366021..4366045,+!p@chr16:4366021..4366045,+!0.59!16.42!GLIS2;;chr5:72744594..72744609,-!p1@FOXD1!0.59!15.90!FOXD1;;chr16:29818199..29818216,+!p11@MAZ!0.59!5.23!MAZ;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.59!2.93!SEBOX;;chr18:53253323..53253359,-!p19@TCF4!0.59!2.93!TCF4;;chr6:28321971..28321995,-!p1@ZNF323!0.59!2.93!ZNF323;;chr3:52001448..52001478,-!p2@PCBP4!0.58!48.22!PCBP4;;chr12:124873357..124873401,-!p1@NCOR2!0.58!39.75!NCOR2;;chr16:69599899..69599919,+!p2@NFAT5!0.58!39.33!NFAT5;;chr17:40477163..40477183,-!p7@STAT3!0.58!2.82!STAT3;;chr14:33403881..33403924,+!p1@NPAS3!0.58!2.82!NPAS3;;chr15:37390482..37390572,-!p7@MEIS2!0.57!3.97!MEIS2;;chr10:28032548..28032559,-!p7@MKX!0.57!2.72!MKX;;chr11:19262421..19262455,-!p3@E2F8!0.57!2.72!E2F8;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.57!2.72!HOXC5;;chr9:124991204..124991246,-!p1@LHX6!0.57!2.72!LHX6;;chr2:172949484..172949522,+!p1@DLX1!0.57!2.72!DLX1;;chr3:147124307..147124336,-!p2@ZIC4!0.57!2.72!ZIC4;;chr3:52001426..52001447,-!p3@PCBP4!0.56!8.68!PCBP4;;chr3:147111231..147111281,+!p3@ZIC1!0.56!2.62!ZIC1;;chr4:111558135..111558198,-!p2@PITX2!0.56!2.62!PITX2;;chr13:100638100..100638115,+!p4@ZIC2!0.56!2.62!ZIC2;;chr16:31076332..31076388,-!p3@ZNF668!0.56!2.62!ZNF668;;chr7:27212407..27212421,-!p9@HOXA10!0.56!2.62!HOXA10;;chr1:42384532..42384603,-!p2@HIVEP3!0.56!2.62!HIVEP3;;chr19:1652555..1652568,-!p2@TCF3!0.55!12.76!TCF3;;chr19:21265028..21265052,+!p2@ZNF714!0.55!5.23!ZNF714;;chr1:197886665..197886732,+!p3@LHX9!0.55!2.51!LHX9;;chr3:157824001..157824078,-!p2@SHOX2!0.55!2.51!SHOX2;;chrY:21906761..21906810,-!p2@KDM5D!0.55!2.51!KDM5D;;chr10:105110831..105110885,-!p1@PCGF6!0.54!30.02!PCGF6;;chr19:19729477..19729542,-!p1@PBX4!0.54!6.07!PBX4;;chr16:68573640..68573660,+!p3@ZFP90!0.54!3.56!ZFP90;;chr17:41623692..41623715,-!p1@ETV4!0.53!12.76!ETV4;;chr12:80084167..80084197,-!p5@PAWR!0.53!6.69!PAWR;;chr3:69811858..69811881,+!p5@MITF!0.53!2.41!MITF;;chr6:31126291..31126399,+!p1@TCF19!0.52!28.45!TCF19;;chr19:38720294..38720348,-!p1@DPF1!0.52!3.03!DPF1;;chr7:27239703..27239715,-!p1@HOXA13!0.52!2.30!HOXA13;;chr2:176994408..176994492,+!p1@HOXD8!0.52!2.30!HOXD8;;chr19:3366570..3366619,+!p1@NFIC!0.51!93.31!NFIC;;chr7:19157043..19157088,-!p2@TWIST1!0.51!6.80!TWIST1;;chr9:99180617..99180658,-!p1@ZNF367!0.51!5.75!ZNF367;;chr7:64023410..64023428,-!p2@ZNF680!0.51!3.97!ZNF680;;chr21:36260980..36261011,-!p1@RUNX1!0.50!82.22!RUNX1;;chr11:65667846..65667868,-!p1@FOSL1!0.50!76.26!FOSL1;;chr19:6110474..61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| |expression_enrichment_score=chr1:197886461..197886558,+!p1@LHX9!2.45!279.92!LHX9;;chr7:27205136..27205164,-!p1@HOXA9!1.87!72.80!HOXA9;;chr17:46682321..46682362,-!p1@HOXB6!1.74!54.18!HOXB6;;chr2:176969228..176969260,+!p1@HOXD11!1.65!43.41!HOXD11;;chr10:28034739..28034756,-!p1@MKX!1.59!37.76!MKX;;chr2:176969179..176969226,+!p2@HOXD11!1.53!32.53!HOXD11;;chr7:27205106..27205134,-!p2@HOXA9!1.39!23.54!HOXA9;;chr8:60031934..60031986,-!p6@TOX!1.35!21.55!TOX;;chr6:10415276..10415341,-!p2@TFAP2A!1.28!22.07!TFAP2A;;chr2:176969097..176969109,+!p3@HOXD11!1.28!17.99!HOXD11;;chr17:46667594..46667619,-!p1@HOXB3!1.27!17.78!HOXB3;;chr1:170632285..170632309,+!p1@PRRX1!1.24!18.72!PRRX1;;chr1:151032860..151032918,+!p1@MLLT11!1.21!178.24!MLLT11;;chr8:60031682..60031710,-!p2@TOX!1.21!24.58!TOX;;chr17:46692318..46692362,-!p5@HOXB8!1.21!15.06!HOXB8;;chr15:37392094..37392116,-!p6@MEIS2!1.20!18.31!MEIS2;;chr17:46692457..46692484,-!p2@HOXB8!1.20!14.96!HOXB8;;chr5:134369905..134369972,-!p1@PITX1!1.17!21.13!PITX1;;chr8:60031809..60031835,-!p4@TOX!1.16!17.15!TOX;;chr6:10412600..10412637,-!p1@TFAP2A!1.15!22.07!TFAP2A;;chr2:19558373..19558392,-!p1@OSR1!1.13!33.89!OSR1;;chr11:120107344..120107351,+!p1@POU2F3!1.13!15.27!POU2F3;;chr8:60031619..60031676,-!p1@TOX!1.12!26.57!TOX;;chr6:10412392..10412409,-!p4@TFAP2A!1.10!13.18!TFAP2A;;chr17:46675558..46675577,-!p2@HOXB6!1.10!11.51!HOXB6;;chr1:151032922..151032951,+!p2@MLLT11!1.09!19.04!MLLT11;;chrY:21906594..21906622,-!p1@KDM5D!1.07!10.77!KDM5D;;chr17:17726907..17726958,-!p2@SREBF1!1.06!65.80!SREBF1;;chr8:60031840..60031869,-!p5@TOX!1.06!10.36!TOX;;chr8:60031762..60031803,-!p3@TOX!1.05!14.96!TOX;;chr9:16705069..16705086,-!p3@BNC2!1.05!10.25!BNC2;;chr3:147127142..147127168,+!p1@ZIC1!1.03!9.62!ZIC1;;chr7:27212501..27212513,-!p5@HOXA10!1.02!9.52!HOXA10;;chr15:37392724..37392757,-!p1@MEIS2!1.00!42.15!MEIS2;;chr10:28032421..28032494,-!p2@MKX!1.00!9.00!MKX;;chr3:147127177..147127194,+!p2@ZIC1!0.99!8.79!ZIC1;;chr8:11561684..11561751,+!p1@GATA4!0.98!8.58!GATA4;;chr11:46299199..46299233,+!p1@CREB3L1!0.97!44.46!CREB3L1;;chr21:36421535..36421610,-!p2@RUNX1!0.97!30.23!RUNX1;;chr17:46692624..46692659,-!p3@HOXB8!0.97!8.37!HOXB8;;chr10:28034395..28034404,-!p9@MKX!0.97!8.37!MKX;;chr1:170633348..170633399,+!p2@PRRX1!0.96!11.30!PRRX1;;chr22:19748231..19748317,+!p1@TBX1!0.96!8.16!TBX1;;chr17:46690839..46690884,-!p1@HOXB8!0.96!8.16!HOXB8;;chr3:69915385..69915438,+!p3@MITF!0.95!7.85!MITF;;chr1:151032142..151032195,+!p5@MLLT11!0.94!15.17!MLLT11;;chr13:100634031..100634045,+!p1@ZIC2!0.94!7.64!ZIC2;;chr3:114343768..114343822,-!p1@ZBTB20!0.93!33.79!ZBTB20;;chr3:114343826..114343869,-!p4@ZBTB20!0.93!15.27!ZBTB20;;chr2:176969124..176969155,+!p5@HOXD11!0.91!7.11!HOXD11;;chr17:46692287..46692317,-!p7@HOXB8!0.91!7.11!HOXB8;;chr1:170633262..170633285,+!p3@PRRX1!0.90!8.05!PRRX1;;chr2:200323414..200323455,-!p1@SATB2!0.87!14.23!SATB2;;chr2:5832508..5832524,+!p1@SOX11!0.87!6.38!SOX11;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.86!66.00!GLIS2;;chr15:37392534..37392562,-!p10@MEIS2!0.85!6.69!MEIS2;;chr9:126774018..126774055,+!p1@LHX2!0.85!6.07!LHX2;;chr7:26191809..26191890,+!p1@NFE2L3!0.84!30.96!NFE2L3;;chr7:19157248..19157268,-!p1@TWIST1!0.84!17.47!TWIST1;;chr17:46622070..46622109,-!p1@HOXB2!0.84!13.91!HOXB2;;chr19:31840130..31840160,-!p2@TSHZ3!0.84!9.41!TSHZ3;;chr17:46622205..46622218,-!p3@HOXB2!0.84!7.01!HOXB2;;chr17:46667628..46667642,-!p2@HOXB3!0.84!5.86!HOXB3;;chr7:1577899..1577943,+!p3@MAFK!0.84!5.86!MAFK;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.84!5.86!HOXC5;;chr15:42749722..42749739,-!p2@ZFP106!0.82!10.46!ZFP106;;chr20:62680984..62680999,-!p1@SOX18!0.82!7.64!SOX18;;chr7:28220198..28220269,-!p2@JAZF1!0.81!52.41!JAZF1;;chr5:133450365..133450444,+!p1@TCF7!0.81!26.88!TCF7;;chr11:65667884..65667895,-!p2@FOSL1!0.81!22.59!FOSL1;;chrY:2803415..2803468,+!p1@ZFY!0.81!5.44!ZFY;;chr12:124873852..124873881,-!p3@NCOR2!0.80!34.73!NCOR2;;chr17:46622114..46622138,-!p4@HOXB2!0.79!8.16!HOXB2;;chr17:46688334..46688385,-!p1@HOXB7!0.79!7.74!HOXB7;;chr3:157823517..157823562,-!p1@SHOX2!0.79!5.65!SHOX2;;chr11:46299539..46299620,+!p2@CREB3L1!0.78!8.89!CREB3L1;;chr2:200322654..200322707,-!p2@SATB2!0.78!7.64!SATB2;;chr12:54380404..54380433,+!p3@HOXC10!0.77!4.92!HOXC10;;chr20:42295745..42295765,+!p1@MYBL2!0.76!85.25!MYBL2;;chr15:37392593..37392607,-!p13@MEIS2!0.76!5.86!MEIS2;;chr16:51185172..51185197,-!p1@SALL1!0.76!4.81!SALL1;;chr3:147111198..147111225,+!p4@ZIC1!0.76!4.81!ZIC1;;chr3:69915369..69915381,+!p4@MITF!0.76!4.71!MITF;;chr1:151032782..151032801,+!p4@MLLT11!0.75!9.94!MLLT11;;chr10:64134120..64134183,+!p1@ZNF365!0.75!5.65!ZNF365;;chr1:3569072..3569093,+!p1@TP73!0.75!4.60!TP73;;chr15:37392703..37392717,-!p8@MEIS2!0.74!6.69!MEIS2;;chr1:151032739..151032748,+!p6@MLLT11!0.74!5.86!MLLT11;;chr12:54332608..54332636,+!p1@HOXC13!0.74!4.50!HOXC13;;chr7:28725740..28725778,+!p1@CREB5!0.73!43.20!CREB5;;chr19:13134457..13134462,+!p5@NFIX!0.73!8.37!NFIX;;chr19:49864746..49864780,-!p2@TEAD2!0.73!6.28!TEAD2;;chr3:69811882..69811898,+!p6@MITF!0.73!4.39!MITF;;chr5:134369879..134369898,-!p2@PITX1!0.73!4.39!PITX1;;chr5:172662197..172662216,-!p1@NKX2-5!0.73!4.39!NKX2-5;;chr15:37391588..37391604,-!p11@MEIS2!0.72!5.65!MEIS2;;chr15:37392576..37392589,-!p12@MEIS2!0.72!5.23!MEIS2;;chr1:197886421..197886432,+!p2@LHX9!0.72!4.29!LHX9;;chr20:42295713..42295738,+!p2@MYBL2!0.71!27.20!MYBL2;;chr2:121493425..121493474,+!p1@GLI2!0.71!9.73!GLI2;;chr17:46687959..46688007,-!p2@HOXB7!0.71!5.96!HOXB7;;chr18:53068911..53068935,-!p4@TCF4!0.71!4.71!TCF4;;chr2:66662510..66662521,+!p6@MEIS1!0.71!4.08!MEIS1;;chr10:102505493..102505546,+!p2@PAX2!0.71!4.08!PAX2;;chr13:100634130..100634143,+!p3@ZIC2!0.71!4.08!ZIC2;;chr17:70117153..70117174,+!p1@SOX9!0.70!46.55!SOX9;;chr1:247171316..247171336,-!p3@ZNF695!0.70!6.28!ZNF695;;chr12:77459306..77459365,-!p1@E2F7!0.69!55.96!E2F7;;chr12:125002827..125002855,-!p5@NCOR2!0.69!5.86!NCOR2;;chr17:46622229..46622257,-!p6@HOXB2!0.69!4.71!HOXB2;;chr9:4300050..4300118,-!p1@GLIS3!0.68!27.82!GLIS3;;chr17:46692603..46692621,-!p6@HOXB8!0.68!3.77!HOXB8;;chr1:170632250..170632277,+!p7@PRRX1!0.67!3.66!PRRX1;;chr22:22874610..22874616,-!p1@ZNF280A!0.67!3.66!ZNF280A;;chr17:41277372..41277418,-!p1@BRCA1!0.66!14.75!BRCA1;;chr3:107244229..107244254,+!p3@BBX!0.66!6.38!BBX;;chr3:181429704..181429722,+!p1@SOX2!0.66!3.56!SOX2;;chr6:10412576..10412599,-!p5@TFAP2A!0.66!3.56!TFAP2A;;chr19:21264991..21265026,+!p1@ZNF714!0.65!26.57!ZNF714;;chr8:67525443..67525459,-!p2@MYBL1!0.65!5.54!MYBL1;;chr14:33408072..33408114,+!p2@NPAS3!0.65!4.18!NPAS3;;chr13:100623375..100623425,-!p1@ZIC5!0.65!3.45!ZIC5;;chr17:7590797..7590815,-!p1@TP53!0.64!172.39!TP53;;chr5:176738887..176738934,-!p1@MXD3!0.64!26.05!MXD3;;chr9:130954041..130954121,-!p2@CIZ1!0.64!16.84!CIZ1;;chr12:54393880..54393962,+!p1@HOXC9!0.64!3.35!HOXC9;;chr17:46667561..46667572,-!p4@HOXB3!0.64!3.35!HOXB3;;chr7:77428149..77428220,+!p1@PHTF2!0.63!39.33!PHTF2;;chr20:32274179..32274213,-!p1@E2F1!0.63!25.52!E2F1;;chr15:37392616..37392638,-!p2@MEIS2!0.63!11.82!MEIS2;;chr2:42721205..42721307,+!p4@MTA3!0.63!3.24!MTA3;;chr1:170632959..170632987,+!p4@PRRX1!0.62!3.56!PRRX1;;chr3:114343870..114343887,-!p9@ZBTB20!0.62!3.14!ZBTB20;;chr9:128509663..128509715,+!p1@PBX3!0.61!12.03!PBX3;;chr16:1429627..1429662,-!p2@UNKL!0.61!10.36!UNKL;;chr21:36259445..36259519,-!p4@RUNX1!0.61!9.83!RUNX1;;chr19:13134772..13134822,+!p2@NFIX!0.61!4.92!NFIX;;chr2:66662281..66662308,+!p1@MEIS1!0.60!11.92!MEIS1;;chr2:71127699..71127744,+!p1@VAX2!0.60!6.90!VAX2;;chr15:80696703..80696754,+!p1@ARNT2!0.60!4.18!ARNT2;;chr16:4366021..4366045,+!p@chr16:4366021..4366045,+!0.59!16.42!GLIS2;;chr5:72744594..72744609,-!p1@FOXD1!0.59!15.90!FOXD1;;chr16:29818199..29818216,+!p11@MAZ!0.59!5.23!MAZ;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!0.59!2.93!SEBOX;;chr18:53253323..53253359,-!p19@TCF4!0.59!2.93!TCF4;;chr6:28321971..28321995,-!p1@ZNF323!0.59!2.93!ZNF323;;chr3:52001448..52001478,-!p2@PCBP4!0.58!48.22!PCBP4;;chr12:124873357..124873401,-!p1@NCOR2!0.58!39.75!NCOR2;;chr16:69599899..69599919,+!p2@NFAT5!0.58!39.33!NFAT5;;chr17:40477163..40477183,-!p7@STAT3!0.58!2.82!STAT3;;chr14:33403881..33403924,+!p1@NPAS3!0.58!2.82!NPAS3;;chr15:37390482..37390572,-!p7@MEIS2!0.57!3.97!MEIS2;;chr10:28032548..28032559,-!p7@MKX!0.57!2.72!MKX;;chr11:19262421..19262455,-!p3@E2F8!0.57!2.72!E2F8;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.57!2.72!HOXC5;;chr9:124991204..124991246,-!p1@LHX6!0.57!2.72!LHX6;;chr2:172949484..172949522,+!p1@DLX1!0.57!2.72!DLX1;;chr3:147124307..147124336,-!p2@ZIC4!0.57!2.72!ZIC4;;chr3:52001426..52001447,-!p3@PCBP4!0.56!8.68!PCBP4;;chr3:147111231..147111281,+!p3@ZIC1!0.56!2.62!ZIC1;;chr4:111558135..111558198,-!p2@PITX2!0.56!2.62!PITX2;;chr13:100638100..100638115,+!p4@ZIC2!0.56!2.62!ZIC2;;chr16:31076332..31076388,-!p3@ZNF668!0.56!2.62!ZNF668;;chr7:27212407..27212421,-!p9@HOXA10!0.56!2.62!HOXA10;;chr1:42384532..42384603,-!p2@HIVEP3!0.56!2.62!HIVEP3;;chr19:1652555..1652568,-!p2@TCF3!0.55!12.76!TCF3;;chr19:21265028..21265052,+!p2@ZNF714!0.55!5.23!ZNF714;;chr1:197886665..197886732,+!p3@LHX9!0.55!2.51!LHX9;;chr3:157824001..157824078,-!p2@SHOX2!0.55!2.51!SHOX2;;chrY:21906761..21906810,-!p2@KDM5D!0.55!2.51!KDM5D;;chr10:105110831..105110885,-!p1@PCGF6!0.54!30.02!PCGF6;;chr19:19729477..19729542,-!p1@PBX4!0.54!6.07!PBX4;;chr16:68573640..68573660,+!p3@ZFP90!0.54!3.56!ZFP90;;chr17:41623692..41623715,-!p1@ETV4!0.53!12.76!ETV4;;chr12:80084167..80084197,-!p5@PAWR!0.53!6.69!PAWR;;chr3:69811858..69811881,+!p5@MITF!0.53!2.41!MITF;;chr6:31126291..31126399,+!p1@TCF19!0.52!28.45!TCF19;;chr19:38720294..38720348,-!p1@DPF1!0.52!3.03!DPF1;;chr7:27239703..27239715,-!p1@HOXA13!0.52!2.30!HOXA13;;chr2:176994408..176994492,+!p1@HOXD8!0.52!2.30!HOXD8;;chr19:3366570..3366619,+!p1@NFIC!0.51!93.31!NFIC;;chr7:19157043..19157088,-!p2@TWIST1!0.51!6.80!TWIST1;;chr9:99180617..99180658,-!p1@ZNF367!0.51!5.75!ZNF367;;chr7:64023410..64023428,-!p2@ZNF680!0.51!3.97!ZNF680;;chr21:36260980..36261011,-!p1@RUNX1!0.50!82.22!RUNX1;;chr11:65667846..65667868,-!p1@FOSL1!0.50!76.26!FOSL1;;chr19:6110474..61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| ||
|ffid_belonging_in_development=CL:0000133,CL:0000339,CL:0000221,UBERON:0002532,UBERON:0006601,UBERON:0006238,UBERON:0010316 | |||
|fonse_cell_line=FF:0100255 | |fonse_cell_line=FF:0100255 | ||
|fonse_cell_line_closure=FF:0100255 | |fonse_cell_line_closure=FF:0100255 | ||
Line 35: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/glioblastoma%2520cell%2520line%253aA172%252c%2520tech_rep2.CNhs11248.10444-106F3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/glioblastoma%2520cell%2520line%253aA172%252c%2520tech_rep2.CNhs11248.10444-106F3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/glioblastoma%2520cell%2520line%253aA172%252c%2520tech_rep2.CNhs11248.10444-106F3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/glioblastoma%2520cell%2520line%253aA172%252c%2520tech_rep2.CNhs11248.10444-106F3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/glioblastoma%2520cell%2520line%253aA172%252c%2520tech_rep2.CNhs11248.10444-106F3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10444-106F3 | |id=FF:10444-106F3 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0100016 | ||
|is_obsolete= | |||
|library_id=CNhs11248!CNhs11185 | |||
|library_id_phase_based=2:CNhs11248 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10444 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10444 | |||
|name=glioblastoma cell line:A172 | |name=glioblastoma cell line:A172 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 42: | Line 62: | ||
|profile_cagescan=NCig10059,,, | |profile_cagescan=NCig10059,,, | ||
|profile_hcage=CNhs11248 & CNhs11185,LSID757,release008,COMPLETED | |profile_hcage=CNhs11248 & CNhs11185,LSID757,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=106 | |rna_box=106 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
Line 57: | Line 80: | ||
|rna_weight_ug=37.17625 | |rna_weight_ug=37.17625 | ||
|sample_age=unknown | |sample_age=unknown | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB2530 | |sample_cell_catalog=RCB2530 | ||
|sample_cell_line=A172 | |sample_cell_line=A172 | ||
Line 77: | Line 101: | ||
|sample_tissue=brain | |sample_tissue=brain | ||
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| |top_motifs=HOXA9_MEIS1:2.0308510814;TFDP1:1.44560807399;ZNF384:1.36614042134;POU3F1..4:1.25559179789;GFI1:1.09541412181;EN1,2:1.07886127724;E2F1..5:0.967869148778;ADNP_IRX_SIX_ZHX:0.952054189441;PRRX1,2:0.931765634854;ZIC1..3:0.922927369268;PITX1..3:0.888587914613;XCPE1{core}:0.881394195531;NKX3-1:0.868990008005;TLX1..3_NFIC{dimer}:0.802716541321;NRF1:0.7910783973;ZNF143:0.768209080049;NR3C1:0.754449678431;FOXD3:0.751589364447;ARID5B:0.715545644575;NKX6-1,2:0.660975253586;TEAD1:0.65553060343;NFY{A,B,C}:0.650179334209;SOX2:0.609913936407;PDX1:0.609425933543;NKX2-3_NKX2-5:0.594701126518;STAT5{A,B}:0.593419573554;RXRA_VDR{dimer}:0.590701989259;ZNF238:0.568399161521;EGR1..3:0.564417093265;HBP1_HMGB_SSRP1_UBTF:0.549603889316;SOX17:0.542425314538;MZF1:0.541425590102;PAX8:0.535867777999;AIRE:0.531134701026;GTF2A1,2:0.519452463096;PAX4:0.511173887506;GTF2I:0.495718733122;ZNF148:0.489063498472;FOXP1:0.483187887044;ELK1,4_GABP{A,B1}:0.461008643907;RFX1:0.453804666063;NFE2:0.438699540418;ALX4:0.435261396517;TLX2:0.422536756978;FOXM1:0.411709208258;OCT4_SOX2{dimer}:0.409684461156;NFE2L2:0.405630186171;EBF1:0.396847707841;ONECUT1,2:0.396174585578;BACH2:0.38565888224;GFI1B:0.37001753252;EVI1:0.34819202133;TP53:0.343779734831;ZBTB6:0.333979081191;CUX2:0.332363152851;TFAP2{A,C}:0.331354913544;TAL1_TCF{3,4,12}:0.318217691099;MYBL2:0.316271498654;NR1H4:0.310933755309;PBX1:0.310745004025;TFAP2B:0.257119779175;POU2F1..3:0.246612876637;PATZ1:0.246514686035;HIC1:0.245112576757;FOS_FOS{B,L1}_JUN{B,D}:0.228858462175;HOX{A5,B5}:0.21348235133;HSF1,2:0.206959074936;LEF1_TCF7_TCF7L1,2:0.199174380805;SP1:0.192825354775;CRX:0.185901023484;RREB1:0.181220641838;NANOG:0.180211535044;STAT1,3:0.175744416685;KLF4:0.164338893035;CDC5L:0.148642986637;PRDM1:0.140617159071;PAX5:0.130611199099;NFIX:0.125199881823;IKZF1:0.120197503694;HOX{A6,A7,B6,B7}:0.11363439129;RBPJ:0.1093573636;bHLH_family:0.108706916478;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.103776825436;TEF:0.1000939963;POU5F1:0.085957420229;LHX3,4:0.0812181152581;MYB:0.0728936171304;FOXQ1:0.0677384756117;FOSL2:0.0644909283157;EP300:0.0635807305397;FOX{I1,J2}:0.0556109948412;TBX4,5:0.0496294956253;GCM1,2:0.0252935781697;YY1:0.00785358288823;GATA4:-0.0144103114764;MEF2{A,B,C,D}:-0.0150541943603;MAZ:-0.0153335901001;CDX1,2,4:-0.0170800475802;ZFP161:-0.0191598101563;FOX{F1,F2,J1}:-0.033116065773;RXR{A,B,G}:-0.0635582853244;MTE{core}:-0.0734782786996;FOXA2:-0.0847933466878;POU1F1:-0.0961003282527;MYOD1:-0.0967704082586;NKX3-2:-0.112012812012;HNF1A:-0.118257621388;BREu{core}:-0.125436066833;PAX1,9:-0.131211589904;IRF1,2:-0.132238232741;PPARG:-0.132910553981;ELF1,2,4:-0.133399763355;IRF7:-0.140218263089;IKZF2:-0.142101911517;MED-1{core}:-0.157008827783;STAT2,4,6:-0.158073854574;NFATC1..3:-0.15962008775;DBP:-0.180337332654;SMAD1..7,9:-0.182834495893;RUNX1..3:-0.192969036119;TOPORS:-0.192987222319;NR6A1:-0.193243903967;TFCP2:-0.196320218433;DMAP1_NCOR{1,2}_SMARC:-0.20864539805;SREBF1,2:-0.213257344232;HLF:-0.216669229126;SOX{8,9,10}:-0.228112327822;ZBTB16:-0.232189307755;MYFfamily:-0.246464780575;GATA6:-0.247218309394;HOX{A4,D4}:-0.251881268046;HNF4A_NR2F1,2:-0.261781049149;PAX3,7:-0.263409909553;UFEwm:-0.265190863809;RORA:-0.271571748854;SRF:-0.277683006477;NFKB1_REL_RELA:-0.278765054559;ATF2:-0.281229261349;LMO2:-0.292335370856;ETS1,2:-0.299320028685;RFX2..5_RFXANK_RFXAP:-0.303726459801;PAX6:-0.31372852823;XBP1:-0.327174131894;FOXO1,3,4:-0.349288712364;FOXN1:-0.358508783565;SNAI1..3:-0.387231895152;REST:-0.40319522783;CEBPA,B_DDIT3:-0.405816071365;CREB1:-0.413296228401;GZF1:-0.419899109939;SPIB:-0.422731285586;VSX1,2:-0.42318298893;HMGA1,2:-0.45578221579;JUN:-0.464680084453;FOXP3:-0.492596705842;TGIF1:-0.496466722919;ATF5_CREB3:-0.504491830844;ALX1:-0.52129987078;TFAP4:-0.52503641612;SPI1:-0.529304045129;NR5A1,2:-0.586895590424;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.595174465073;ESRRA:-0.596713503804;NKX2-2,8:-0.59766547025;ATF4:-0.603733081887;SOX5:-0.6154507639;NFIL3:-0.616672524116;POU6F1:-0.621474689629;FOX{D1,D2}:-0.624958182379;NFE2L1:-0.658373806944;HAND1,2:-0.660697170104;BPTF:-0.666705976034;FOXL1:-0.706653019182;T:-0.712345062373;SPZ1:-0.715503908595;AHR_ARNT_ARNT2:-0.74944265521;ZNF423:-0.749966252093;HES1:-0.758936245558;NHLH1,2:-0.759679488131;NKX2-1,4:-0.787933336538;PAX2:-0.796134735369;HMX1:-0.842171053837;ZEB1:-0.920020065438;MAFB:-0.949567198456;GLI1..3:-0.973031800126;NANOG{mouse}:-0.974287181741;ATF6:-1.00971840022;MTF1:-1.01441224337;TBP:-1.02453780208;AR:-1.17451334092;ESR1:-1.23409759281;HIF1A:-1.44653644786HOXA9_MEIS1:1.56891988048;ZNF384:1.50429374809;TFDP1:1.48315412703;POU3F1..4:1.28353871852;FOXD3:1.15739213951;GFI1:1.09682925119;ZIC1..3:1.00548160803;PRRX1,2:0.987949829276;XCPE1{core}:0.946020048246;ADNP_IRX_SIX_ZHX:0.916756218003;E2F1..5:0.912049446247;NKX2-3_NKX2-5:0.897542744393;NKX6-1,2:0.869410711027;NR3C1:0.861893142482;ZNF143:0.838769432062;EN1,2:0.833327232514;NRF1:0.817646622573;PITX1..3:0.80014656972;EVI1:0.782884243858;TLX1..3_NFIC{dimer}:0.760301678428;PAX4:0.727914137584;ARID5B:0.726601756758;STAT5{A,B}:0.724040308376;NFY{A,B,C}:0.708599381552;NKX3-1:0.704302365479;TEAD1:0.682307687602;FOXM1:0.668689159644;HBP1_HMGB_SSRP1_UBTF:0.650089253339;OCT4_SOX2{dimer}:0.554838880731;EGR1..3:0.543722264576;ALX4:0.54301582737;SOX2:0.537297085458;SOX17:0.529742096863;ELK1,4_GABP{A,B1}:0.524237296128;AIRE:0.4922945392;MZF1:0.467499332397;RFX1:0.464430303252;ZNF148:0.456877837395;GTF2I:0.439649537783;GTF2A1,2:0.433937649855;TLX2:0.430857691968;HOX{A6,A7,B6,B7}:0.423264982165;GFI1B:0.409704372625;PDX1:0.403395697911;ONECUT1,2:0.403311650471;MYBL2:0.40138079277;TEF:0.395779604734;TFAP2{A,C}:0.395212660146;TAL1_TCF{3,4,12}:0.392795959431;ZNF238:0.387396615103;NFE2:0.375837715522;HOX{A5,B5}:0.365501924496;NFIX:0.364927391797;BACH2:0.353355051367;NFE2L2:0.347210665671;FOXQ1:0.346445790501;PBX1:0.343020842105;IKZF2:0.334434171323;LHX3,4:0.300315595916;KLF4:0.294401232163;SP1:0.29234147276;GATA4:0.29126086062;EBF1:0.289518596668;TP53:0.284037939544;RBPJ:0.279940551118;HIC1:0.26694633634;RXRA_VDR{dimer}:0.256985529281;TFAP2B:0.252086297802;HSF1,2:0.241762064107;CDX1,2,4:0.224294686574;PRDM1:0.223697517975;CUX2:0.220153261232;PAX8:0.215699228713;STAT1,3:0.208315610608;FOS_FOS{B,L1}_JUN{B,D}:0.199582572243;LEF1_TCF7_TCF7L1,2:0.173709422215;FOX{F1,F2,J1}:0.172074405678;PATZ1:0.171400607961;CRX:0.156051289983;POU2F1..3:0.135119918285;ZBTB6:0.126281320493;RREB1:0.115636995867;FOXP1:0.107248936749;ZFP161:0.0962191048444;NR1H4:0.0898864719947;DBP:0.076687927317;HMGA1,2:0.0702330893517;POU5F1:0.0700515352699;PPARG:0.0644075938692;GCM1,2:0.054776104111;FOX{I1,J2}:0.0529976597621;MEF2{A,B,C,D}:0.0324850790642;MYB:0.0279756868478;FOXA2:0.0226085639019;NANOG:0.0210490830619;bHLH_family:0.0169237731466;PAX5:0.0165510444121;ZBTB16:0.00969705596414;FOSL2:0.000419134560721;CDC5L:-0.003791170842;PAX6:-0.016037677669;MAZ:-0.0291300535691;PAX3,7:-0.036916662813;IRF7:-0.0547088789851;POU1F1:-0.0573929669937;HNF1A:-0.0612811437156;MED-1{core}:-0.0621975045573;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.0654864281347;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.0744799394941;MTE{core}:-0.0835281754505;YY1:-0.096011907499;IRF1,2:-0.0965854553695;NFATC1..3:-0.131682678989;RXR{A,B,G}:-0.140749958487;BREu{core}:-0.169341066623;RUNX1..3:-0.174194242764;EP300:-0.179671100097;DMAP1_NCOR{1,2}_SMARC:-0.179753538878;ELF1,2,4:-0.182568858764;PAX1,9:-0.187757660664;STAT2,4,6:-0.204777133229;NKX3-2:-0.210036102811;FOXO1,3,4:-0.217311066637;HOX{A4,D4}:-0.217843938571;BPTF:-0.218574937013;TFCP2:-0.223777731752;FOXN1:-0.224914110654;HNF4A_NR2F1,2:-0.226866237077;SMAD1..7,9:-0.228302755109;UFEwm:-0.242797136038;IKZF1:-0.243773743414;SOX{8,9,10}:-0.247985797887;HLF:-0.251087879993;GATA6:-0.252600918913;SRF:-0.267698329311;MYFfamily:-0.278950239244;LMO2:-0.28492400918;MYOD1:-0.295078764939;SREBF1,2:-0.295376442915;NFKB1_REL_RELA:-0.298840253187;VSX1,2:-0.319010117347;TBX4,5:-0.3195608387;POU6F1:-0.323295326704;RORA:-0.326324102292;T:-0.337013705788;ETS1,2:-0.341808504568;NR6A1:-0.346700623035;XBP1:-0.347971395184;SNAI1..3:-0.381954753957;CEBPA,B_DDIT3:-0.384772828434;SOX5:-0.386033407687;ATF2:-0.417313391185;TGIF1:-0.43231836085;SPIB:-0.435029987979;FOXP3:-0.445680947049;REST:-0.450385534166;FOXL1:-0.463835183603;SPI1:-0.491033514912;ATF4:-0.491639242431;GZF1:-0.504421677372;ATF5_CREB3:-0.512056098113;TOPORS:-0.523925803734;JUN:-0.539785820423;TFAP4:-0.546592761034;RFX2..5_RFXANK_RFXAP:-0.563323257556;NKX2-1,4:-0.584514308746;NFIL3:-0.587545586975;CREB1:-0.598143438596;ESRRA:-0.646185228617;ZNF423:-0.68744848675;ALX1:-0.699007194503;SPZ1:-0.699294522183;GLI1..3:-0.710422105591;PAX2:-0.713463081882;HAND1,2:-0.714351002054;NR5A1,2:-0.718276199324;NFE2L1:-0.726355184719;NHLH1,2:-0.740298406838;FOX{D1,D2}:-0.806806231106;AHR_ARNT_ARNT2:-0.807773028169;HES1:-0.843751799549;MTF1:-0.857129175993;NKX2-2,8:-0.871206911279;HMX1:-0.871478569741;ZEB1:-0.890338797116;ATF6:-1.00401389868;MAFB:-1.06034076665;TBP:-1.07851206176;AR:-1.09445392476;NANOG{mouse}:-1.10226740796;ESR1:-1.20572312277;HIF1A:-1.34887487836 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10444-106F3;search_select_hide=table117:FF:10444-106F3 | |||
}} | }} |
Latest revision as of 14:02, 3 June 2020
Name: | glioblastoma cell line:A172 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs11248,CNhs11185 |
Sample type: | cell lines |
Genomic View: | UCSC |
RefEX: | Specific genes |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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HumanCAGEScan Download raw sequence, BAM & CTSS | ||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11248
library id: CNhs11185
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11248
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.611 |
10 | 10 | 0.277 |
100 | 100 | 0.944 |
101 | 101 | 0.422 |
102 | 102 | 0.484 |
103 | 103 | 0.624 |
104 | 104 | 0.624 |
105 | 105 | 0.771 |
106 | 106 | 3.11104e-4 |
107 | 107 | 0.38 |
108 | 108 | 0.561 |
109 | 109 | 0.378 |
11 | 11 | 0.321 |
110 | 110 | 0.698 |
111 | 111 | 0.374 |
112 | 112 | 0.0136 |
113 | 113 | 0.207 |
114 | 114 | 0.209 |
115 | 115 | 0.35 |
116 | 116 | 0.952 |
117 | 117 | 0.929 |
118 | 118 | 0.963 |
119 | 119 | 0.819 |
12 | 12 | 0.274 |
120 | 120 | 0.693 |
121 | 121 | 0.763 |
122 | 122 | 0.809 |
123 | 123 | 0.31 |
124 | 124 | 0.214 |
125 | 125 | 0.96 |
126 | 126 | 0.11 |
127 | 127 | 0.528 |
128 | 128 | 0.00968 |
129 | 129 | 0.434 |
13 | 13 | 0.0968 |
130 | 130 | 0.0775 |
131 | 131 | 0.229 |
132 | 132 | 0.632 |
133 | 133 | 0.402 |
134 | 134 | 0.478 |
135 | 135 | 0.0744 |
136 | 136 | 0.117 |
137 | 137 | 0.0176 |
138 | 138 | 0.211 |
139 | 139 | 0.00206 |
14 | 14 | 0.852 |
140 | 140 | 0.707 |
141 | 141 | 0.549 |
142 | 142 | 0.0452 |
143 | 143 | 0.445 |
144 | 144 | 0.622 |
145 | 145 | 0.624 |
146 | 146 | 0.671 |
147 | 147 | 0.46 |
148 | 148 | 0.204 |
149 | 149 | 0.257 |
15 | 15 | 0.67 |
150 | 150 | 0.834 |
151 | 151 | 0.534 |
152 | 152 | 0.33 |
153 | 153 | 0.166 |
154 | 154 | 0.456 |
155 | 155 | 0.262 |
156 | 156 | 0.707 |
157 | 157 | 0.757 |
158 | 158 | 0.685 |
159 | 159 | 0.651 |
16 | 16 | 0.172 |
160 | 160 | 0.349 |
161 | 161 | 0.589 |
162 | 162 | 0.892 |
163 | 163 | 0.108 |
164 | 164 | 0.271 |
165 | 165 | 0.55 |
166 | 166 | 0.604 |
167 | 167 | 0.252 |
168 | 168 | 0.552 |
169 | 169 | 0.43 |
17 | 17 | 0.541 |
18 | 18 | 0.353 |
19 | 19 | 0.373 |
2 | 2 | 0.61 |
20 | 20 | 0.827 |
21 | 21 | 0.599 |
22 | 22 | 0.733 |
23 | 23 | 0.37 |
24 | 24 | 0.633 |
25 | 25 | 0.26 |
26 | 26 | 0.442 |
27 | 27 | 0.132 |
28 | 28 | 0.326 |
29 | 29 | 0.331 |
3 | 3 | 0.371 |
30 | 30 | 0.66 |
31 | 31 | 0.962 |
32 | 32 | 0.00542 |
33 | 33 | 0.448 |
34 | 34 | 0.328 |
35 | 35 | 0.116 |
36 | 36 | 0.0219 |
37 | 37 | 0.517 |
38 | 38 | 0.593 |
39 | 39 | 0.235 |
4 | 4 | 0.832 |
40 | 40 | 0.128 |
41 | 41 | 0.424 |
42 | 42 | 0.925 |
43 | 43 | 0.109 |
44 | 44 | 0.189 |
45 | 45 | 0.911 |
46 | 46 | 0.239 |
47 | 47 | 0.837 |
48 | 48 | 0.735 |
49 | 49 | 0.0642 |
5 | 5 | 0.0718 |
50 | 50 | 0.936 |
51 | 51 | 0.671 |
52 | 52 | 0.107 |
53 | 53 | 0.873 |
54 | 54 | 0.958 |
55 | 55 | 0.798 |
56 | 56 | 0.545 |
57 | 57 | 0.622 |
58 | 58 | 0.0507 |
59 | 59 | 0.16 |
6 | 6 | 0.229 |
60 | 60 | 0.00448 |
61 | 61 | 0.806 |
62 | 62 | 0.0944 |
63 | 63 | 0.229 |
64 | 64 | 0.374 |
65 | 65 | 0.0847 |
66 | 66 | 6.33585e-4 |
67 | 67 | 0.807 |
68 | 68 | 0.741 |
69 | 69 | 0.459 |
7 | 7 | 0.0322 |
70 | 70 | 0.00331 |
71 | 71 | 0.476 |
72 | 72 | 0.26 |
73 | 73 | 0.314 |
74 | 74 | 0.888 |
75 | 75 | 0.219 |
76 | 76 | 0.0569 |
77 | 77 | 0.345 |
78 | 78 | 0.466 |
79 | 79 | 0.0943 |
8 | 8 | 0.799 |
80 | 80 | 0.773 |
81 | 81 | 0.483 |
82 | 82 | 0.381 |
83 | 83 | 0.851 |
84 | 84 | 0.701 |
85 | 85 | 0.00462 |
86 | 86 | 0.419 |
87 | 87 | 0.711 |
88 | 88 | 0.555 |
89 | 89 | 0.0335 |
9 | 9 | 0.114 |
90 | 90 | 0.761 |
91 | 91 | 0.0888 |
92 | 92 | 0.178 |
93 | 93 | 0.754 |
94 | 94 | 0.364 |
95 | 95 | 0.0995 |
96 | 96 | 0.167 |
97 | 97 | 0.0954 |
98 | 98 | 0.00431 |
99 | 99 | 0.583 |
library id: CNhs11185
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.643 |
10 | 10 | 0.359 |
100 | 100 | 0.99 |
101 | 101 | 0.762 |
102 | 102 | 0.219 |
103 | 103 | 0.439 |
104 | 104 | 0.633 |
105 | 105 | 0.551 |
106 | 106 | 5.4886e-4 |
107 | 107 | 0.397 |
108 | 108 | 0.557 |
109 | 109 | 0.396 |
11 | 11 | 0.319 |
110 | 110 | 0.666 |
111 | 111 | 0.509 |
112 | 112 | 0.00791 |
113 | 113 | 0.23 |
114 | 114 | 0.301 |
115 | 115 | 0.396 |
116 | 116 | 0.831 |
117 | 117 | 0.963 |
118 | 118 | 0.657 |
119 | 119 | 0.934 |
12 | 12 | 0.379 |
120 | 120 | 0.578 |
121 | 121 | 0.844 |
122 | 122 | 0.785 |
123 | 123 | 0.862 |
124 | 124 | 0.273 |
125 | 125 | 0.736 |
126 | 126 | 0.0342 |
127 | 127 | 0.689 |
128 | 128 | 0.00681 |
129 | 129 | 0.408 |
13 | 13 | 0.0756 |
130 | 130 | 0.0755 |
131 | 131 | 0.0761 |
132 | 132 | 0.479 |
133 | 133 | 0.577 |
134 | 134 | 0.671 |
135 | 135 | 0.122 |
136 | 136 | 0.121 |
137 | 137 | 0.00945 |
138 | 138 | 0.275 |
139 | 139 | 0.00813 |
14 | 14 | 0.943 |
140 | 140 | 0.591 |
141 | 141 | 0.603 |
142 | 142 | 0.0192 |
143 | 143 | 0.329 |
144 | 144 | 0.984 |
145 | 145 | 0.76 |
146 | 146 | 0.753 |
147 | 147 | 0.449 |
148 | 148 | 0.42 |
149 | 149 | 0.37 |
15 | 15 | 0.744 |
150 | 150 | 0.893 |
151 | 151 | 0.629 |
152 | 152 | 0.256 |
153 | 153 | 0.34 |
154 | 154 | 0.585 |
155 | 155 | 0.372 |
156 | 156 | 0.891 |
157 | 157 | 0.885 |
158 | 158 | 0.469 |
159 | 159 | 0.793 |
16 | 16 | 0.284 |
160 | 160 | 0.324 |
161 | 161 | 0.654 |
162 | 162 | 0.866 |
163 | 163 | 0.337 |
164 | 164 | 0.148 |
165 | 165 | 0.556 |
166 | 166 | 0.751 |
167 | 167 | 0.235 |
168 | 168 | 0.751 |
169 | 169 | 0.477 |
17 | 17 | 0.489 |
18 | 18 | 0.481 |
19 | 19 | 0.456 |
2 | 2 | 0.749 |
20 | 20 | 0.946 |
21 | 21 | 0.733 |
22 | 22 | 0.824 |
23 | 23 | 0.355 |
24 | 24 | 0.523 |
25 | 25 | 0.244 |
26 | 26 | 0.396 |
27 | 27 | 0.234 |
28 | 28 | 0.262 |
29 | 29 | 0.21 |
3 | 3 | 0.626 |
30 | 30 | 0.657 |
31 | 31 | 0.904 |
32 | 32 | 0.00719 |
33 | 33 | 0.395 |
34 | 34 | 0.24 |
35 | 35 | 0.137 |
36 | 36 | 0.0152 |
37 | 37 | 0.504 |
38 | 38 | 0.843 |
39 | 39 | 0.186 |
4 | 4 | 0.847 |
40 | 40 | 0.0351 |
41 | 41 | 0.43 |
42 | 42 | 0.756 |
43 | 43 | 0.0766 |
44 | 44 | 0.0649 |
45 | 45 | 0.917 |
46 | 46 | 0.241 |
47 | 47 | 0.919 |
48 | 48 | 0.872 |
49 | 49 | 0.0676 |
5 | 5 | 0.0484 |
50 | 50 | 0.992 |
51 | 51 | 0.623 |
52 | 52 | 0.0769 |
53 | 53 | 0.43 |
54 | 54 | 0.798 |
55 | 55 | 0.786 |
56 | 56 | 0.223 |
57 | 57 | 0.476 |
58 | 58 | 0.0269 |
59 | 59 | 0.15 |
6 | 6 | 0.372 |
60 | 60 | 0.00246 |
61 | 61 | 0.969 |
62 | 62 | 0.0783 |
63 | 63 | 0.303 |
64 | 64 | 0.391 |
65 | 65 | 0.121 |
66 | 66 | 8.6527e-4 |
67 | 67 | 0.934 |
68 | 68 | 0.914 |
69 | 69 | 0.444 |
7 | 7 | 0.0407 |
70 | 70 | 0.0296 |
71 | 71 | 0.539 |
72 | 72 | 0.13 |
73 | 73 | 0.199 |
74 | 74 | 0.888 |
75 | 75 | 0.275 |
76 | 76 | 0.0324 |
77 | 77 | 0.656 |
78 | 78 | 0.515 |
79 | 79 | 0.164 |
8 | 8 | 0.748 |
80 | 80 | 0.915 |
81 | 81 | 0.522 |
82 | 82 | 0.527 |
83 | 83 | 0.875 |
84 | 84 | 0.838 |
85 | 85 | 0.00404 |
86 | 86 | 0.367 |
87 | 87 | 0.502 |
88 | 88 | 0.736 |
89 | 89 | 0.0855 |
9 | 9 | 0.0637 |
90 | 90 | 0.478 |
91 | 91 | 0.0965 |
92 | 92 | 0.271 |
93 | 93 | 0.555 |
94 | 94 | 0.173 |
95 | 95 | 0.124 |
96 | 96 | 0.118 |
97 | 97 | 0.143 |
98 | 98 | 0.0123 |
99 | 99 | 0.503 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11248
library id: CNhs11185
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100016 A-172 cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0002319 (neural cell)
0000095 (neuron associated cell)
0000243 (glial cell (sensu Vertebrata))
0000125 (glial cell)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
3093 (nervous system cancer)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000955 (brain)
0004121 (ectoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0001017 (central nervous system)
0001016 (nervous system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0101530 (glioblastoma cell line sample)
0100711 (glioma cell line sample)
0100255 (brain cell line sample)
0100690 (brain cancer cell line sample)
0101531 (glial cell line sample)
0100016 (A-172 cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000339 (glioblast (sensu Vertebrata))
CL:0000221 (ectodermal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0006238 (future brain)
UBERON:0010316 (germ layer / neural crest)