FF:10450-106F9: Difference between revisions

Latest revision as of 14:03, 3 June 2020

Name:	embryonic kidney cell line: HEK293/SLAM untreated
Species:	Human (Homo sapiens)
Library ID:	CNhs11046
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	kidney
dev stage	NA
sex	NA
age	NA
cell type	unclassifiable
cell line	HEK293/SLAM
company	NA
collaboration	Chieko Kai (University of Tokyo)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004732

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11046		CAGE		DRX007871		DRR008743

Accession ID Hg19

Library id		BAM		CTSS
CNhs11046		DRZ000168		DRZ001553

Accession ID Hg38

Library id		BAM		CTSS
CNhs11046		DRZ011518		DRZ012903

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0124
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.608
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.00643
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0809
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.088
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0.0428
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0861
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0857
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.403
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	-0.00655
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.0478
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.631
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11046

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	8.80609e-4
MA0003.1	MA0003.1	0.142
MA0004.1	MA0004.1	0.511
MA0006.1	MA0006.1	0.528
MA0007.1	MA0007.1	0.547
MA0009.1	MA0009.1	0.723
MA0014.1	MA0014.1	0.519
MA0017.1	MA0017.1	0.0289
MA0018.2	MA0018.2	0.0948
MA0019.1	MA0019.1	0.198
MA0024.1	MA0024.1	9.30818e-7
MA0025.1	MA0025.1	0.287
MA0027.1	MA0027.1	0.683
MA0028.1	MA0028.1	8.57692e-5
MA0029.1	MA0029.1	0.0783
MA0030.1	MA0030.1	0.663
MA0031.1	MA0031.1	0.762
MA0035.2	MA0035.2	0.0436
MA0038.1	MA0038.1	0.00286
MA0039.2	MA0039.2	0.429
MA0040.1	MA0040.1	0.206
MA0041.1	MA0041.1	0.471
MA0042.1	MA0042.1	0.348
MA0043.1	MA0043.1	0.0376
MA0046.1	MA0046.1	0.759
MA0047.2	MA0047.2	0.511
MA0048.1	MA0048.1	0.367
MA0050.1	MA0050.1	1.98326e-9
MA0051.1	MA0051.1	2.79814e-4
MA0052.1	MA0052.1	0.0272
MA0055.1	MA0055.1	0.0739
MA0057.1	MA0057.1	0.353
MA0058.1	MA0058.1	0.357
MA0059.1	MA0059.1	0.478
MA0060.1	MA0060.1	2.08438e-26
MA0061.1	MA0061.1	0.00829
MA0062.2	MA0062.2	1.24569e-5
MA0065.2	MA0065.2	0.0822
MA0066.1	MA0066.1	0.119
MA0067.1	MA0067.1	0.56
MA0068.1	MA0068.1	0.0293
MA0069.1	MA0069.1	0.44
MA0070.1	MA0070.1	0.0242
MA0071.1	MA0071.1	0.842
MA0072.1	MA0072.1	0.0644
MA0073.1	MA0073.1	0.54
MA0074.1	MA0074.1	0.515
MA0076.1	MA0076.1	1.92399e-6
MA0077.1	MA0077.1	0.563
MA0078.1	MA0078.1	0.297
MA0079.2	MA0079.2	0.557
MA0080.2	MA0080.2	1.89772e-9
MA0081.1	MA0081.1	0.229
MA0083.1	MA0083.1	0.0178
MA0084.1	MA0084.1	0.211
MA0087.1	MA0087.1	0.745
MA0088.1	MA0088.1	0.0406
MA0090.1	MA0090.1	0.0122
MA0091.1	MA0091.1	0.00597
MA0092.1	MA0092.1	0.0771
MA0093.1	MA0093.1	0.357
MA0099.2	MA0099.2	2.11164e-7
MA0100.1	MA0100.1	0.307
MA0101.1	MA0101.1	0.203
MA0102.2	MA0102.2	0.00368
MA0103.1	MA0103.1	0.576
MA0104.2	MA0104.2	0.108
MA0105.1	MA0105.1	0.00136
MA0106.1	MA0106.1	0.701
MA0107.1	MA0107.1	0.0378
MA0108.2	MA0108.2	0.25
MA0111.1	MA0111.1	0.625
MA0112.2	MA0112.2	3.09033e-5
MA0113.1	MA0113.1	0.159
MA0114.1	MA0114.1	0.313
MA0115.1	MA0115.1	0.645
MA0116.1	MA0116.1	0.0127
MA0117.1	MA0117.1	0.789
MA0119.1	MA0119.1	0.112
MA0122.1	MA0122.1	0.496
MA0124.1	MA0124.1	0.53
MA0125.1	MA0125.1	0.107
MA0131.1	MA0131.1	0.282
MA0135.1	MA0135.1	0.716
MA0136.1	MA0136.1	0.00361
MA0137.2	MA0137.2	0.801
MA0138.2	MA0138.2	0.064
MA0139.1	MA0139.1	0.819
MA0140.1	MA0140.1	0.0616
MA0141.1	MA0141.1	0.293
MA0142.1	MA0142.1	0.464
MA0143.1	MA0143.1	0.284
MA0144.1	MA0144.1	0.0308
MA0145.1	MA0145.1	0.0688
MA0146.1	MA0146.1	0.128
MA0147.1	MA0147.1	0.19
MA0148.1	MA0148.1	0.32
MA0149.1	MA0149.1	0.726
MA0150.1	MA0150.1	0.00344
MA0152.1	MA0152.1	0.393
MA0153.1	MA0153.1	0.604
MA0154.1	MA0154.1	0.0141
MA0155.1	MA0155.1	0.124
MA0156.1	MA0156.1	0.591
MA0157.1	MA0157.1	0.917
MA0159.1	MA0159.1	0.0496
MA0160.1	MA0160.1	0.321
MA0162.1	MA0162.1	0.159
MA0163.1	MA0163.1	0.0125
MA0164.1	MA0164.1	0.873
MA0258.1	MA0258.1	0.00224
MA0259.1	MA0259.1	0.268

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11046

Novel motif	Logo	P-value
1	1	0.22
10	10	0.528
100	100	0.41
101	101	0.717
102	102	0.818
103	103	0.167
104	104	0.688
105	105	0.406
106	106	2.11687e-4
107	107	0.0294
108	108	0.653
109	109	0.211
11	11	0.156
110	110	0.383
111	111	0.747
112	112	0.0173
113	113	0.17
114	114	0.0202
115	115	0.972
116	116	0.674
117	117	0.567
118	118	0.482
119	119	0.0995
12	12	0.852
120	120	0.953
121	121	0.918
122	122	0.506
123	123	0.285
124	124	0.478
125	125	0.7
126	126	0.56
127	127	0.239
128	128	0.0213
129	129	0.611
13	13	0.854
130	130	0.0541
131	131	0.263
132	132	0.52
133	133	0.267
134	134	0.628
135	135	6.3029e-4
136	136	0.159
137	137	0.157
138	138	0.237
139	139	0.0415
14	14	0.577
140	140	0.293
141	141	0.529
142	142	0.769
143	143	0.339
144	144	0.409
145	145	0.344
146	146	0.851
147	147	0.191
148	148	0.25
149	149	0.0165
15	15	0.275
150	150	0.472
151	151	0.186
152	152	0.0222
153	153	0.379
154	154	0.556
155	155	0.957
156	156	0.816
157	157	0.444
158	158	0.445
159	159	0.637
16	16	0.291
160	160	0.467
161	161	0.779
162	162	0.769
163	163	0.313
164	164	0.104
165	165	0.787
166	166	0.49
167	167	0.322
168	168	0.0605
169	169	0.00668
17	17	0.107
18	18	0.0956
19	19	0.0769
2	2	0.171
20	20	0.381
21	21	0.456
22	22	0.102
23	23	0.00131
24	24	0.94
25	25	0.873
26	26	0.415
27	27	0.0789
28	28	0.981
29	29	0.648
3	3	0.175
30	30	0.523
31	31	0.544
32	32	0.00603
33	33	0.874
34	34	0.268
35	35	0.522
36	36	0.875
37	37	0.151
38	38	0.349
39	39	0.523
4	4	0.157
40	40	0.83
41	41	0.391
42	42	0.741
43	43	0.127
44	44	0.451
45	45	0.403
46	46	0.1
47	47	0.512
48	48	0.457
49	49	0.373
5	5	0.278
50	50	0.645
51	51	0.23
52	52	0.143
53	53	0.403
54	54	0.231
55	55	0.0637
56	56	0.659
57	57	0.362
58	58	0.274
59	59	0.077
6	6	0.89
60	60	0.0194
61	61	0.838
62	62	0.0936
63	63	0.173
64	64	0.601
65	65	0.0345
66	66	8.32558e-4
67	67	0.77
68	68	0.726
69	69	0.696
7	7	0.797
70	70	0.00719
71	71	0.302
72	72	0.198
73	73	0.081
74	74	0.811
75	75	0.417
76	76	0.854
77	77	0.142
78	78	0.823
79	79	0.0694
8	8	0.37
80	80	0.0528
81	81	0.414
82	82	0.0127
83	83	0.118
84	84	0.702
85	85	0.00188
86	86	0.442
87	87	0.469
88	88	0.56
89	89	0.0783
9	9	0.077
90	90	0.485
91	91	0.0399
92	92	0.0246
93	93	0.501
94	94	0.012
95	95	0.511
96	96	0.083
97	97	1
98	98	0.237
99	99	0.73

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11046

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100007 HEK-293 cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0002113 (kidney)
0002100 (trunk)
0000062 (organ)
0000475 (organism subdivision)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0009569 (subdivision of trunk)
0000489 (cavitated compound organ)
0005177 (trunk region element)
0005172 (abdomen element)
0005173 (abdominal segment element)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0000916 (abdomen)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100067 (kidney cell line sample)
0102733 (embryonic kidney cell line sample)
0100669 (embryonic cell line sample)
0100007 (HEK-293 cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0003104 (mesenchyme)
UBERON:0003918 (kidney mesenchyme)
UBERON:0007687 (kidney field)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00004732
+|accession_numbers=CAGE;DRX007871;DRR008743;DRZ000168;DRZ001553;DRZ011518;DRZ012903
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002113,UBERON:0002100,UBERON:0000062,UBERON:0000475,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0009569,UBERON:0000489,UBERON:0005177,UBERON:0005172,UBERON:0005173,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0000916
 |ancestors_in_cell_lineage_facet=
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chrX:84498989..84499003,+!p1@ZNF711!2.45!377.84!ZNF711;;chr7:27205136..27205164,-!p1@HOXA9!1.92!81.91!HOXA9;;chr7:27213893..27213954,-!p1@HOXA10!1.54!33.80!HOXA10;;chr17:46703687..46703740,-!p1@HOXB9!1.54!33.59!HOXB9;;chr8:80679993..80680011,-!p1@HEY1!1.48!41.89!HEY1;;chr12:54393880..54393962,+!p1@HOXC9!1.47!28.31!HOXC9;;chr7:27224842..27224872,-!p1@HOXA11!1.43!25.82!HOXA11;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.38!22.92!HOXC5;;chr6:10412600..10412637,-!p1@TFAP2A!1.37!36.91!TFAP2A;;chr2:172967621..172967637,-!p1@DLX2!1.36!57.86!DLX2;;chr7:27192185..27192209,-!p1@HOXA3!1.36!21.88!HOXA3;;chr2:176969228..176969260,+!p1@HOXD11!1.30!19.18!HOXD11;;chr7:27205106..27205134,-!p2@HOXA9!1.26!17.32!HOXA9;;chr7:27179814..27179840,-!p4@HOXA3!1.26!17.11!HOXA3;;chr5:134369905..134369972,-!p1@PITX1!1.24!24.89!PITX1;;chr6:1389789..1389821,+!p1@FOXF2!1.24!22.19!FOXF2;;chr18:19749541..19749557,+!p1@GATA6!1.23!50.08!GATA6;;chr17:46667594..46667619,-!p1@HOXB3!1.22!15.76!HOXB3;;chr6:10415276..10415341,-!p2@TFAP2A!1.21!18.66!TFAP2A;;chr7:27224795..27224840,-!p2@HOXA11!1.21!15.14!HOXA11;;chr6:19837592..19837621,+!p1@ID4!1.20!89.17!ID4;;chr14:38064429..38064486,-!p1@FOXA1!1.20!14.83!FOXA1;;chr8:25902876..25902936,-!p1@EBF2!1.19!14.62!EBF2;;chr20:42295713..42295738,+!p2@MYBL2!1.18!82.02!MYBL2;;chr2:176969179..176969226,+!p2@HOXD11!1.18!14.10!HOXD11;;chr17:46682321..46682362,-!p1@HOXB6!1.18!14.00!HOXB6;;chr5:172662197..172662216,-!p1@NKX2-5!1.17!13.79!NKX2-5;;chr6:21597765..21597779,+!p2@SOX4!1.16!108.56!SOX4;;chr6:10412392..10412409,-!p4@TFAP2A!1.16!15.45!TFAP2A;;chr8:11561684..11561751,+!p1@GATA4!1.16!13.58!GATA4;;chr7:27183263..27183284,-!p2@HOXA5!1.14!12.86!HOXA5;;chr20:42295745..42295765,+!p1@MYBL2!1.10!190.16!MYBL2;;chr15:76629123..76629151,+!p1@ISL2!1.09!12.44!ISL2;;chr6:20402102..20402152,+!p1@E2F3!1.08!45.62!E2F3;;chr14:37131058..37131139,+!p1@PAX9!1.08!11.09!PAX9;;chr17:46622070..46622109,-!p1@HOXB2!1.07!24.37!HOXB2;;chr6:1610293..1610310,+!p1@FOXC1!1.07!18.25!FOXC1;;chr2:176972000..176972025,+!p4@HOXD11!1.07!10.68!HOXD11;;chr13:72441315..72441454,-!p1@DACH1!1.06!21.05!DACH1;;chr21:38071430..38071456,+!p1@SIM2!1.05!10.16!SIM2;;chr16:29818160..29818188,+!p6@MAZ!1.04!47.18!MAZ;;chr6:126070769..126070801,+!p1@HEY2!1.04!11.41!HEY2;;chr5:72744594..72744609,-!p1@FOXD1!1.02!44.38!FOXD1;;chr2:200322654..200322707,-!p2@SATB2!1.02!13.79!SATB2;;chr7:27183291..27183324,-!p1@HOXA5!1.02!9.44!HOXA5;;chr12:85673977..85674015,+!p1@ALX1!1.01!9.33!ALX1;;chr2:223163706..223163730,-!p1@PAX3!1.01!9.23!PAX3;;chr1:3569072..3569093,+!p1@TP73!1.01!9.12!TP73;;chr7:27239703..27239715,-!p1@HOXA13!1.01!9.12!HOXA13;;chr16:29818199..29818216,+!p11@MAZ!0.99!14.52!MAZ;;chr1:935467..935484,-!p1@HES4!0.98!39.19!HES4;;chr14:61116183..61116208,-!p1@SIX1!0.97!32.25!SIX1;;chr7:155250249..155250278,+!p@chr7:155250249..155250278,+!0.97!8.40!EN2;;chr17:46675558..46675577,-!p2@HOXB6!0.97!8.30!HOXB6;;chr6:21593973..21593988,+!p1@SOX4!0.96!299.87!SOX4;;chr2:172949484..172949522,+!p1@DLX1!0.93!7.57!DLX1;;chr22:19748231..19748317,+!p1@TBX1!0.92!7.36!TBX1;;chr14:29235961..29236008,+!p1@FOXG1!0.92!7.36!FOXG1;;chr10:102891048..102891078,+!p1@TLX1!0.92!7.26!TLX1;;chr19:23433144..23433204,-!p1@ZNF724P!0.91!33.59!ZNF724P;;chr2:176969097..176969109,+!p3@HOXD11!0.91!7.05!HOXD11;;chr12:54332608..54332636,+!p1@HOXC13!0.91!7.05!HOXC13;;chr7:35293685..35293718,-!p1@TBX20!0.90!6.95!TBX20;;chr19:21264991..21265026,+!p1@ZNF714!0.89!46.87!ZNF714;;chr1:935496..935509,-!p3@HES4!0.89!10.47!HES4;;chr2:172950227..172950249,+!p2@DLX1!0.89!6.84!DLX1;;chr13:100623375..100623425,-!p1@ZIC5!0.89!6.74!ZIC5;;chr16:29819403..29819442,+!p5@MAZ!0.88!56.72!MAZ;;chr16:54320101..54320125,-!p4@IRX3!0.88!9.54!IRX3;;chr21:38071403..38071428,+!p2@SIM2!0.88!6.64!SIM2;;chr16:51185172..51185197,-!p1@SALL1!0.88!6.53!SALL1;;chr1:23857698..23857733,-!p1@E2F2!0.86!11.72!E2F2;;chr13:100638100..100638115,+!p4@ZIC2!0.86!6.32!ZIC2;;chr7:27153454..27153469,-!p2@HOXA3!0.86!6.22!HOXA3;;chr7:28448965..28448994,+!p2@CREB5!0.85!22.60!CREB5;;chr19:24097675..24097699,+!p1@ZNF726!0.85!21.46!ZNF726;;chr6:85473156..85473210,-!p2@TBX18!0.85!7.57!TBX18;;chr6:1612300..1612324,+!p3@FOXC1!0.85!6.12!FOXC1;;chr11:31832658..31832681,-!p1@PAX6!0.85!6.12!PAX6;;chr9:129376201..129376225,+!p1@LMX1B!0.84!5.91!LMX1B;;chr6:85474299..85474324,-!p1@TBX18!0.83!10.68!TBX18;;chr18:19749517..19749531,+!p3@GATA6!0.83!10.68!GATA6;;chr5:134369879..134369898,-!p2@PITX1!0.83!5.81!PITX1;;chr7:27239740..27239759,-!p2@HOXA13!0.83!5.81!HOXA13;;chr1:40105299..40105326,-!p1@HEYL!0.83!5.70!HEYL;;chr11:129245736..129245758,+!p2@BARX2!0.83!5.70!BARX2;;chr2:60780607..60780624,-!p2@BCL11A!0.82!18.25!BCL11A;;chr5:174151553..174151610,+!p1@MSX2!0.82!9.64!MSX2;;chr17:46622205..46622218,-!p3@HOXB2!0.82!6.64!HOXB2;;chr17:35294075..35294102,+!p1@ENST00000559335!0.82!5.60!LHX1;;chr18:55102598..55102623,+!p1@ONECUT2!0.82!5.60!ONECUT2;;chr13:100634031..100634045,+!p1@ZIC2!0.82!5.60!ZIC2;;chr19:22034809..22034878,-!p2@ZNF43!0.81!20.32!ZNF43;;chr6:21597514..21597578,+!p4@SOX4!0.81!9.54!SOX4;;chr17:46622114..46622138,-!p4@HOXB2!0.81!8.71!HOXB2;;chr3:18486354..18486377,-!p2@SATB1!0.81!7.05!SATB1;;chr2:122042770..122042785,-!p1@TFCP2L1!0.81!5.50!TFCP2L1;;chr11:129245526..129245553,+!p1@BARX2!0.81!5.50!BARX2;;chr8:67874805..67874831,-!p1@TCF24!0.81!5.50!TCF24;;chr2:172967276..172967296,-!p3@DLX2!0.81!5.39!DLX2;;chr17:48045917..48045977,+!p1@DLX4!0.81!5.39!DLX4;;chr14:29236269..29236285,+!p3@FOXG1!0.81!5.39!FOXG1;;chr5:124082322..124082364,-!p1@ZNF608!0.79!14.10!ZNF608;;chr10:70320074..70320106,+!p1@TET1!0.79!10.89!TET1;;chr6:20402070..20402082,+!p5@E2F3!0.79!6.12!E2F3;;chr17:46675420..46675465,-!p3@HOXB6!0.78!5.91!HOXB6;;chr2:172967242..172967265,-!p2@DLX2!0.78!5.08!DLX2;;chr2:176994408..176994492,+!p1@HOXD8!0.78!5.08!HOXD8;;chr8:37553292..37553317,+!p1@ZNF703!0.77!127.64!ZNF703;;chr17:41277372..41277418,-!p1@BRCA1!0.77!19.29!BRCA1;;chr4:81118647..81118666,+!p1@PRDM8!0.77!6.74!PRDM8;;chr3:169381420..169381535,-!p1@MECOM!0.77!5.91!MECOM;;chr17:59477233..59477263,+!p1@TBX2!0.76!16.07!TBX2;;chr1:935398..935465,-!p2@HES4!0.76!10.47!HES4;;chr8:106330656..106330684,+!p1@ZFPM2!0.75!13.17!ZFPM2;;chr1:151032922..151032951,+!p2@MLLT11!0.75!8.09!MLLT11;;chr8:80680024..80680046,-!p2@HEY1!0.75!5.29!HEY1;;chr6:10415484..10415508,-!p3@TFAP2A!0.75!4.67!TFAP2A;;chr7:156803329..156803362,-!p1@MNX1!0.75!4.67!MNX1;;chr7:27183114..27183138,-!p3@HOXA5!0.75!4.67!HOXA5;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.75!4.67!HOXC5;;chr2:176972047..176972063,+!p7@HOXD11!0.75!4.67!HOXD11;;chr3:181429704..181429722,+!p1@SOX2!0.75!4.67!SOX2;;chr12:66218836..66218888,+!p1@HMGA2!0.74!46.66!HMGA2;;chr7:19157248..19157268,-!p1@TWIST1!0.74!13.58!TWIST1;;chr5:170736216..170736238,+!p2@TLX3!0.74!4.46!TLX3;;chr5:174151612..174151633,+!p2@MSX2!0.74!4.46!MSX2;;chrX:84499081..84499115,+!p2@ZNF711!0.73!6.74!ZNF711;;chr6:1612248..1612281,+!p2@FOXC1!0.73!4.77!FOXC1;;chr7:27213872..27213886,-!p4@HOXA10!0.73!4.35!HOXA10;;chr2:176969124..176969155,+!p5@HOXD11!0.73!4.35!HOXD11;;chr19:23941680..23941704,-!p1@ZNF681!0.72!13.69!ZNF681;;chr2:200323414..200323455,-!p1@SATB2!0.72!9.75!SATB2;;chr2:166326200..166326216,+!p1@CSRNP3!0.72!6.53!CSRNP3;;chr13:100634130..100634143,+!p3@ZIC2!0.72!4.25!ZIC2;;chr21:27107465..27107557,+!p3@GABPA!0.71!16.59!GABPA;;chr19:21265028..21265052,+!p2@ZNF714!0.71!7.98!ZNF714;;chr11:6947720..6947812,+!p1@ZNF215!0.71!5.60!ZNF215;;chr13:72441074..72441172,-!p2@DACH1!0.71!4.15!DACH1;;chr2:88752207..88752218,-!p1@FOXI3!0.71!4.15!FOXI3;;chr7:42276787..42276815,-!p1@GLI3!0.70!11.82!GLI3;;chr20:31350184..31350200,+!p1@DNMT3B!0.70!9.12!DNMT3B;;chr7:73038839..73038862,-!p1@MLXIPL!0.70!4.04!MLXIPL;;chr5:72744562..72744573,-!p3@FOXD1!0.69!4.98!FOXD1;;chr5:172662230..172662241,-!p3@NKX2-5!0.69!3.94!NKX2-5;;chr4:111558135..111558198,-!p2@PITX2!0.69!3.94!PITX2;;chr5:92918919..92918942,+!p1@NR2F1!0.68!19.08!NR2F1;;chr19:23941647..23941672,-!p2@ZNF681!0.68!6.74!ZNF681;;chr10:8095593..8095625,+!p3@GATA3!0.68!4.56!GATA3;;chr11:31832610..31832639,-!p5@PAX6!0.68!3.84!PAX6;;chr11:44331576..44331650,-!p1@ALX4!0.68!3.84!ALX4;;chr17:46667561..46667572,-!p4@HOXB3!0.68!3.84!HOXB3;;chr6:10412576..10412599,-!p5@TFAP2A!0.68!3.84!TFAP2A;;chr6:126070748..126070768,+!p2@HEY2!0.68!3.84!HEY2;;chr7:27170359..27170381,-!p1@HOXA4!0.68!3.73!HOXA4;;chr17:46806067..46806097,-!p1@HOXB13!0.68!3.73!HOXB13;;chr12:54431720..54431732,+!p13@HOXC4!0.68!3.73!HOXC4;;chr13:100634004..100634025,+!p2@ZIC2!0.68!3.73!ZIC2;;chr2:176971685..176971700,+!p6@HOXD11!0.68!3.73!HOXD11;;chr8:77593474..77593612,+!p1@ZFHX4!0.67!17.52!ZFHX4;;chr19:21950332..21950356,-!p2@ZNF100!0.67!8.61!ZNF100;;chr7:27135591..27135658,-!p1@HOXA1!0.67!7.78!HOXA1;;chr20:6748325..6748352,+!p1@BMP2!0.67!5.60!BMP2;;chr19:11750566..11750627,+!p1@ZNF833P!0.67!5.29!ZNF833P;;chr10:8096772..8096787,+!p2@GATA3!0.67!4.46!GATA3;;chr2:176971980..176971995,+!p9@HOXD11!0.67!3.63!HOXD11;;chr3:181429741..181429767,+!p2@SOX2!0.67!3.63!SOX2;;chr10:77161504..77161530,-!p1@ZNF503!0.66!55.16!ZNF503;;chr1:227751231..227751273,+!p1@ZNF678!0.66!26.34!ZNF678;;chr15:96876340..96876348,+!p22@NR2F2!0.66!4.04!NR2F2;;chr12:54332652..54332671,+!p2@HOXC13!0.66!3.53!HOXC13;;chr2:177001290..177001315,+!p1@HOXD3!0.66!3.53!HOXD3;;chr1:63788229..63788250,+!p1@FOXD3!0.66!3.53!FOXD3;;chr1:226595741..226595818,-!p1@PARP1!0.65!208.62!PARP1;;chr6:31126291..31126399,+!p1@TCF19!0.65!38.36!TCF19;;chr20:32274179..32274213,-!p1@E2F1!0.65!26.75!E2F1;;chr20:50721803..50721857,-!p2@ZFP64!0.65!5.91!ZFP64;;chr6:100912785..100912822,-!p1@SIM1!0.65!3.42!SIM1;;chr7:27219849..27219867,-!p6@HOXA10!0.65!3.42!HOXA10;;chr2:176973275..176973300,+!p4@HOXD10!0.65!3.42!HOXD10;;chr16:54320158..54320200,-!p5@IRX3!0.64!5.18!IRX3;;chr6:21597431..21597447,+!p8@SOX4!0.64!4.46!SOX4;;chr2:176973498..176973524,+!p1@HOXD10!0.64!3.32!HOXD10;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!0.64!3.32!SMARCE1;;chr18:19749504..19749515,+!p5@GATA6!0.64!3.32!GATA6;;chr2:60780753..60780800,-!p1@BCL11A!0.63!18.66!BCL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+|ffid_belonging_in_development=UBERON:0003104,UBERON:0003918,UBERON:0007687
 |fonse_cell_line=FF:0100067,FF:0100669
 |fonse_cell_line_closure=FF:0100067,FF:0100669
@@ Line 37: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/embryonic%2520kidney%2520cell%2520line%253a%2520HEK293%252fSLAM%2520untreated.CNhs11046.10450-106F9.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/embryonic%2520kidney%2520cell%2520line%253a%2520HEK293%252fSLAM%2520untreated.CNhs11046.10450-106F9.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/embryonic%2520kidney%2520cell%2520line%253a%2520HEK293%252fSLAM%2520untreated.CNhs11046.10450-106F9.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/embryonic%2520kidney%2520cell%2520line%253a%2520HEK293%252fSLAM%2520untreated.CNhs11046.10450-106F9.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/embryonic%2520kidney%2520cell%2520line%253a%2520HEK293%252fSLAM%2520untreated.CNhs11046.10450-106F9.hg38.nobarcode.ctss.bed.gz
 |id=FF:10450-106F9
 |is_a=EFO:0002091;;FF:0000210;;FF:0100007
 |is_obsolete=
+|library_id=CNhs11046
+|library_id_phase_based=2:CNhs11046
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10450
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10450
 |name=embryonic kidney cell line: HEK293/SLAM untreated
 |namespace=FANTOM5
@@ Line 45: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11046,LSID722,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=106
 |rna_catalog_number=
@@ Line 60: / Line 78: @@
 |rna_weight_ug=16.39665
 |sample_age=
+|sample_category=cell lines
 |sample_cell_catalog=
 |sample_cell_line=HEK293/SLAM
@@ Line 81: / Line 100: @@
 |top_motifs=NFY{A,B,C}:2.1422752617;ELK1,4_GABP{A,B1}:2.07548768772;PBX1:1.98441211122;ZNF143:1.89685421509;NRF1:1.7949280853;E2F1..5:1.79473676367;YY1:1.65408128404;STAT1,3:1.42955822231;TFDP1:1.34163519796;BREu{core}:1.32017998609;T:1.25495466155;HOX{A6,A7,B6,B7}:1.22943163287;POU1F1:1.21173581083;NKX2-1,4:1.1557700143;GFI1:1.14672320441;NANOG:1.13479338708;ONECUT1,2:1.11312766564;HOX{A5,B5}:1.07073223799;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.02334985177;IKZF1:1.01629735213;RBPJ:1.00668628399;PRRX1,2:0.96820274344;EN1,2:0.949445147226;NKX2-3_NKX2-5:0.892374160939;PITX1..3:0.887306116012;FOX{I1,J2}:0.8481596504;HOXA9_MEIS1:0.840336991577;ATF4:0.78319181678;MYB:0.780695807354;TEF:0.71443346952;CDC5L:0.708047879547;CDX1,2,4:0.701537617144;ZEB1:0.677559507709;CRX:0.650051429422;bHLH_family:0.644731759113;SOX{8,9,10}:0.607695146438;STAT5{A,B}:0.606936304961;FOXQ1:0.590482366705;NFIX:0.587659814707;LHX3,4:0.564744177264;NR5A1,2:0.535090222853;GFI1B:0.534980202718;HOX{A4,D4}:0.519277518344;FOXP1:0.47764545225;PDX1:0.466983915074;GZF1:0.460527753046;EVI1:0.445885589912;LEF1_TCF7_TCF7L1,2:0.435124623378;SOX17:0.431012859752;ADNP_IRX_SIX_ZHX:0.423046646222;VSX1,2:0.417063847381;SNAI1..3:0.413356298706;POU6F1:0.411554623706;FOXM1:0.387778287199;RFX1:0.386350493546;FOXA2:0.382574921047;HBP1_HMGB_SSRP1_UBTF:0.375580673773;ZNF384:0.337978354959;FOXD3:0.312520429027;NKX6-1,2:0.302652451906;OCT4_SOX2{dimer}:0.241374676943;ZNF148:0.221307993658;XCPE1{core}:0.215316763891;FOX{F1,F2,J1}:0.208173373759;RORA:0.192086385185;PAX6:0.188930067558;RFX2..5_RFXANK_RFXAP:0.187682733161;PAX8:0.149698124727;LMO2:0.147968720044;CUX2:0.1381195863;NFE2L1:0.130336654627;AHR_ARNT_ARNT2:0.119681975643;DBP:0.1101448676;HIC1:0.105076133688;POU5F1:0.056293032914;AIRE:0.05348378341;HSF1,2:0.0494760043247;TP53:0.04943935151;HNF1A:0.0467188152955;HNF4A_NR2F1,2:0.043736786761;PAX4:0.0434819468517;ZFP161:0.0410109775281;SP1:0.0349953703024;MZF1:-0.00688494351797;ATF2:-0.0186985592431;POU3F1..4:-0.0228709955141;GATA6:-0.0311391210857;GTF2A1,2:-0.0521131964004;ALX1:-0.0643757601977;TFAP2B:-0.0750119090893;REST:-0.0832321755229;ATF5_CREB3:-0.0980918040683;NR6A1:-0.098384124837;ELF1,2,4:-0.101502698468;PAX5:-0.11978431154;SOX5:-0.125529308958;JUN:-0.151178856561;NKX2-2,8:-0.157242106053;MED-1{core}:-0.158281247199;SREBF1,2:-0.171380243071;MYBL2:-0.186675424652;SOX2:-0.196852093787;PAX1,9:-0.20298492059;PAX2:-0.209631555324;MEF2{A,B,C,D}:-0.210800260776;PPARG:-0.216065552001;HAND1,2:-0.228972560545;FOXL1:-0.250369378537;FOXO1,3,4:-0.252602890359;POU2F1..3:-0.255695409856;ZBTB16:-0.257875016313;TGIF1:-0.261368341225;NFE2L2:-0.267848125954;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.279091299895;MYOD1:-0.288808966252;IKZF2:-0.288856113062;EGR1..3:-0.29095224366;ARID5B:-0.320792939822;FOS_FOS{B,L1}_JUN{B,D}:-0.322338970544;TBX4,5:-0.326273980971;TBP:-0.329200327278;UFEwm:-0.338952628222;PAX3,7:-0.342677084907;GATA4:-0.342845698499;TOPORS:-0.344471004022;XBP1:-0.349637588293;BACH2:-0.367578918805;NHLH1,2:-0.373202097255;HIF1A:-0.403649579598;HES1:-0.407580877666;GTF2I:-0.407822189882;PATZ1:-0.411640053049;NFE2:-0.415407521715;NANOG{mouse}:-0.429297006309;ZIC1..3:-0.436929701588;FOXP3:-0.43783287425;TLX1..3_NFIC{dimer}:-0.445356813517;GCM1,2:-0.454940907705;HLF:-0.457350986221;ESR1:-0.466484233565;SPI1:-0.477379258114;NFKB1_REL_RELA:-0.479756917536;PRDM1:-0.494225305314;SPIB:-0.522686048488;NKX3-2:-0.533013114794;NR1H4:-0.53356085075;FOXN1:-0.539276853522;ZBTB6:-0.544206785817;AR:-0.544367740046;RXR{A,B,G}:-0.552763241877;ATF6:-0.55970953969;FOSL2:-0.565931806593;KLF4:-0.581236876045;CREB1:-0.583108240225;NR3C1:-0.590320820565;MYFfamily:-0.595325116285;BPTF:-0.60433489642;FOX{D1,D2}:-0.612434112039;DMAP1_NCOR{1,2}_SMARC:-0.656067810127;RUNX1..3:-0.65790719977;MAZ:-0.669738076228;MTE{core}:-0.686396950027;EBF1:-0.715796324586;NFIL3:-0.723623300353;TEAD1:-0.734159964138;NKX3-1:-0.755919363799;MTF1:-0.799645741431;RREB1:-0.813692053823;IRF7:-0.81565908615;ESRRA:-0.818515210875;ETS1,2:-0.863651484685;ZNF238:-0.903144815885;TFAP2{A,C}:-0.919264108121;CEBPA,B_DDIT3:-0.951371311393;EP300:-1.0097062061;ZNF423:-1.04690316977;MAFB:-1.06920503908;ALX4:-1.15549282829;SPZ1:-1.18959083403;TAL1_TCF{3,4,12}:-1.19783252451;SRF:-1.21819207021;TFCP2:-1.29792062678;IRF1,2:-1.32336345931;STAT2,4,6:-1.33790783467;NFATC1..3:-1.37026201996;GLI1..3:-1.39155921003;SMAD1..7,9:-1.39927413391;TFAP4:-1.41870886979;HMGA1,2:-1.62513959152;HMX1:-1.62660487255;TLX2:-1.66748177089;RXRA_VDR{dimer}:-1.9273946171
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10450-106F9;search_select_hide=table117:FF:10450-106F9
 }}

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FF:10450-106F9: Difference between revisions

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Latest revision as of 14:03, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0