Personal tools

FF:10465-106H6: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005172
|DRA_sample_Accession=CAGE@SAMD00005172
|accession_numbers=CAGE;DRX007931;DRR008803;DRZ000228;DRZ001613
|accession_numbers=CAGE;DRX007931;DRR008803;DRZ000228;DRZ001613;DRZ011578;DRZ012963
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001003,UBERON:0002097,UBERON:0002199,UBERON:0000483,UBERON:0000479,UBERON:0004121,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003102,UBERON:0007376,UBERON:0010371,UBERON:0010317,UBERON:0002416
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001003,UBERON:0002097,UBERON:0002199,UBERON:0000483,UBERON:0000479,UBERON:0004121,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000119,UBERON:0003102,UBERON:0007376,UBERON:0010371,UBERON:0010317,UBERON:0002416
|ancestors_in_cell_lineage_facet=
|ancestors_in_cell_lineage_facet=
Line 62: Line 62:
|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
|repeat_enrich_byfamily=0,0,0,0,0,0.109060369074458,0,0.170473320746578,0,-0.27483329820609,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0.216708248122278,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.0679788476337783,0,0,0,0,0,0,0,0,0.0303151634243945,0,0,0,0,0,0.0480613748611208,0,-0.0969923612426051,0,0,0.0988133906946568,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109060369074458,0.054530184537229,0,0,0,0,0,-2.22486509293685e-06,0,0,0,0.0460730878380375,0.145064341765662,0.098078508953877,0,0,0,0.0981216666700473,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0.807365565316881,0,0,0,0,0,0,0.0379617181358919,0,0,0,-0.057439935027299,-0.0889418739803886,0,0,0,0,0,0
|repeat_enrich_byfamily=0,0,0,0,0,0.109060369074458,0,0.170473320746578,0,-0.27483329820609,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0.216708248122278,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,-0.0679788476337783,0,0,0,0,0,0,0,0,0.0303151634243945,0,0,0,0,0,0.0480613748611208,0,-0.0969923612426051,0,0,0.0988133906946568,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.109060369074458,0.054530184537229,0,0,0,0,0,-2.22486509293685e-06,0,0,0,0.0460730878380375,0.145064341765662,0.098078508953877,0,0,0,0.0981216666700473,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0.807365565316881,0,0,0,0,0,0,0.0379617181358919,0,0,0,-0.057439935027299,-0.0889418739803886,0,0,0,0,0,0
|repeat_enrich_byname=0,0,0,0,0.0981216666700473,0,0,0.433416496244555,0,0,0,0,0,0,0,0,-0.0510218573778107,0,0.451334106497466,-0.0344547734490141,0,0,0.0882703210079775,0.109060369074458,0,0,0,0.196157017907754,0.196157017907754,0,0,0,-0.128119866952565,0,-0.0504125515893149,0,0,0.138126186935796,0,-0.0186252810838506,0.127944265346147,0,0.30941083432153,0.0407161079970896,0,0.109060369074458,0,0,-0.215710484797096,0,-0.0118191147192828,0.0263402007510405,0.047059036013899,-0.460179953820474,-0.04680465889238,0,0,0,-0.200417986373141,0.903304864746902,0,0,0.404312163129803,0.229270405699034,0,0,-0.281984212477177,0,-0.255401495059562,-0.082707295241706,0,0.116108112332627,0,0,0,0,0,0.109060369074458,0,0,0,0,0,-0.0574934668214365,0.149880308115441,0,0,0,0,-0.325258148794797,0,0,-0.104615531839861,0.0611593743481035,0.138031545025379,-0.13614169319841,0.0175126885477476,-0.302389727009913,0.129731080886818,0.0302317352609989,0.162975226520444,-0.0383414802966807,0.00617529835790642,0,0.13901314616772,-0.352856132869457,-0.0641164482608564,-0.245676241853314,-0.143200218599763,0.356093945647401,-0.0588104272242247,0,0.109060369074458,0,-0.331727290992875,0,-0.0723011598795578,0.0624547099259067,0.188668289719621,0.533092492165594,-0.132139917395347,0.081338603670227,-0.167038644280631,-0.0395325284566706,-0.0240199566520402,0,0.104519689977977,0.00129385179659725,0,-0.0162452988352797,0.0298902990831365,0.0588614560628468,-0.347155549061973,0.0708295165591692,-0.287820443903227,0.871552414384377,0.152608693491106,-0.168698842540697,-0.416572367462353,0,0,0.0382355586917398,0,0,0,0.0625712822159984,0,0.0611387564343089,0.0775206465329854,-0.123795192481087,0,0.0223991085216726,-0.0056611446309507,-0.131890404936104,0,0.149466219130609,0.0501471204503595,0.135342343883262,0.293351521689297,0,-0.176818514504034,0.243234806513632,-0.055930327264545,0.0939716656235707,0.749347978939119,0.0151840278840696,-0.0352629993743085,0.0279836009959757,0.121504881019805,-0.0195029102923121,0.0209335365991701,0,-0.0387711873482109,-0.093512805335992,-0.0400941620315469,-0.114681078389765,0,0.0209213072370618,0,0.126646127513068,0,-0.13431016900707,-0.209642400640276,0.283507378116155,-0.011613251678332,0,-0.513798327259092,-0.788130937773974,0,0.0604338740609717,0,0.196157017907754,-0.150367083334639,0.090357520935807,0.461467224511428,0.218970332375754,0,0.0887691113387722,0,0,0.36690336522573,-0.126415668689931,0.196157017907754,0.130420660423056,0.158168981555103,0.183837446253095,0.21482027739803,0.109060369074458,0,0.308205672284689,0,0,-0.0199427375324979,0.196157017907754,0.0261872645995309,-0.253326341486756,-0.0299498823959723,-0.108622809454255,0,0,0.207600461311757,0,0.127450156696874,0,0,0.406251586387668,0,0,0.098078508953877,0,0,0,0,0,0,0,0,0,0.0955625840535337,0.231151996069084,0.109060369074458,0.260492278214914,0,0,0,0,0,0,0,0,0.186480934482706,-0.00172377101999528,0.207773935156544,0.054530184537229,0.054530184537229,0,0,-0.0195663846457209,0.065434062021982,0.109060369074458,0.064294311410122,0,0,0,0,0.182529634327494,0,0,0,0.134335312058353,0.13842656085409,-0.186524966268941,0,0,0,-0.27695440160179,0,0,0,0,-0.0109644858906881,0,0.109060369074458,0.397621283275821,0,-0.358667909300741,0.187088744569864,0,-0.0491523209173674,-1.06147710453481,0.432620855090667,0,0,-0.15228676271543,0,0,-0.173798783954971,0.0134102834296539,0,0.152015388045699,0,0,0,0,0.385128227276932,0,0.219101983844799,0,0,0,0,0,0,0,0.109060369074458,0,0,0.196157017907754,0.0403918093534783,-0.0922240566585104,-0.0640596705171081,0,0,0,0,0,0,0.0304241614583259,-0.127160921100428,0.000966085697011295,0,0,0,0,0,0,0,0.336368866087702,0.807365565316881,0,0,0,0,-0.0969923612426051,0,0,0,0,-0.564807121153884,0,0,-0.277362132193514,0,0,0,0,0,0,0,0,0,0,0,0,0,0.310097410209107,-0.155890027137593,0,0,0,0,0,0,0,-0.27483329820609,0,0,0,0,0.216906977123987,0,0,0,0.328620111455398,0,0.170473320746578,0.109060369074458,0,0,0,0,0,0.098078508953877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.254595592357345,0.0521083571826435,0.0810774347342776,0.0582519585862578,0,0,-0.178098168095813,0,0,0,0,0,0,0.134055251387955,0.0362410319448183,0,0,0,0,0,0,0.054530184537229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.292992663142766,-0.0348580438050884,0,0,0,0,0,0,0,-0.0979578962680575,0,0,0.140381011211703,0,0,0,0,0.152955021699246,0,-0.122581165240227,-0.0069356876218075,0.0788684688248914,0,0,0,-0.054385572482455,0,0,0.0647839386957784,0,0.0422829816555565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0.109060369074458,0,0,0,0,0,0,0,0,0,0.054530184537229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.433416496244555,0,0,0,0,0,0,0,0.0640671456784605,0.196157017907754,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,-0.104025860582586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0746375161174302,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0482220752390542,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.281833418399007,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0,0.0106500111520237,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.144550239214047,0,0,-0.121871460815201,0,0,0,0,0,0,0,0,0,0,0,0,-0.0613201791501264,0,0,0,0,0,0,0,0,0,0,0.0606303268487891,0,0,0,0,0,0,0,0,1.13227489200524,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.054530184537229,-0.0653332903093407,-0.0889418739803886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.216708248122278,0,0,0,0,0,0,0,0,0,0,0,0.054530184537229,0,0.0491733267680735,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0248332621645532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18739838700134,0,0,0,0,0,0,0,0,0.268670624116706,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0759234362717838,0,0,0,0.216708248122278,0,0,0,0,0,0,0.330791350832964,0,0.109060369074458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0121639702220999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0229011022281542,0,0,0,0,0,0,0,0.262432230279932,0,0,0,0,0,0,0,0,0.585985326285532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.074338725436315,0,0.098078508953877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0228135984888456,0,0,0.196157017907754,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.054530184537229,0,0,0,-0.0797419986649781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0988133906946568,0,0.165395675416482,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00459220201564248,0,0,0,0,0,0,0,0,0,0,-0.0412500915278073,0.098078508953877,0,0,0,0.189954824934001,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0553659769134001,0,0.109060369074458,0.0667729005973419,0,-0.0627365812683285,-0.241572302661726,0,0,0,0,0,0.0409183940458311,0,0,0,0,0,0,0,0,0,0,0.0689841213499262,0,0,-0.0282781333494365,0,0,0.878849269728429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0114014712062601,0,0,-0.128404064405309,0,0,-0.102529292682543,0,0,-0.00704498816386034,0,0,-0.174992895090299,-0.199368789777948,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139298071745155,-0.269475635594569,0,0.26713433420774,0,0,0.673190092488075,0,0.165395675416482,0,0.0131009617008709
|repeat_enrich_byname=0,0,0,0,0.0981216666700473,0,0,0.433416496244555,0,0,0,0,0,0,0,0,-0.0510218573778107,0,0.451334106497466,-0.0344547734490141,0,0,0.0882703210079775,0.109060369074458,0,0,0,0.196157017907754,0.196157017907754,0,0,0,-0.128119866952565,0,-0.0504125515893149,0,0,0.138126186935796,0,-0.0186252810838506,0.127944265346147,0,0.30941083432153,0.0407161079970896,0,0.109060369074458,0,0,-0.215710484797096,0,-0.0118191147192828,0.0263402007510405,0.047059036013899,-0.460179953820474,-0.04680465889238,0,0,0,-0.200417986373141,0.903304864746902,0,0,0.404312163129803,0.229270405699034,0,0,-0.281984212477177,0,-0.255401495059562,-0.082707295241706,0,0.116108112332627,0,0,0,0,0,0.109060369074458,0,0,0,0,0,-0.0574934668214365,0.149880308115441,0,0,0,0,-0.325258148794797,0,0,-0.104615531839861,0.0611593743481035,0.138031545025379,-0.13614169319841,0.0175126885477476,-0.302389727009913,0.129731080886818,0.0302317352609989,0.162975226520444,-0.0383414802966807,0.00617529835790642,0,0.13901314616772,-0.352856132869457,-0.0641164482608564,-0.245676241853314,-0.143200218599763,0.356093945647401,-0.0588104272242247,0,0.109060369074458,0,-0.331727290992875,0,-0.0723011598795578,0.0624547099259067,0.188668289719621,0.533092492165594,-0.132139917395347,0.081338603670227,-0.167038644280631,-0.0395325284566706,-0.0240199566520402,0,0.104519689977977,0.00129385179659725,0,-0.0162452988352797,0.0298902990831365,0.0588614560628468,-0.347155549061973,0.0708295165591692,-0.287820443903227,0.871552414384377,0.152608693491106,-0.168698842540697,-0.416572367462353,0,0,0.0382355586917398,0,0,0,0.0625712822159984,0,0.0611387564343089,0.0775206465329854,-0.123795192481087,0,0.0223991085216726,-0.0056611446309507,-0.131890404936104,0,0.149466219130609,0.0501471204503595,0.135342343883262,0.293351521689297,0,-0.176818514504034,0.243234806513632,-0.055930327264545,0.0939716656235707,0.749347978939119,0.0151840278840696,-0.0352629993743085,0.0279836009959757,0.121504881019805,-0.0195029102923121,0.0209335365991701,0,-0.0387711873482109,-0.093512805335992,-0.0400941620315469,-0.114681078389765,0,0.0209213072370618,0,0.126646127513068,0,-0.13431016900707,-0.209642400640276,0.283507378116155,-0.011613251678332,0,-0.513798327259092,-0.788130937773974,0,0.0604338740609717,0,0.196157017907754,-0.150367083334639,0.090357520935807,0.461467224511428,0.218970332375754,0,0.0887691113387722,0,0,0.36690336522573,-0.126415668689931,0.196157017907754,0.130420660423056,0.158168981555103,0.183837446253095,0.21482027739803,0.109060369074458,0,0.308205672284689,0,0,-0.0199427375324979,0.196157017907754,0.0261872645995309,-0.253326341486756,-0.0299498823959723,-0.108622809454255,0,0,0.207600461311757,0,0.127450156696874,0,0,0.406251586387668,0,0,0.098078508953877,0,0,0,0,0,0,0,0,0,0.0955625840535337,0.231151996069084,0.109060369074458,0.260492278214914,0,0,0,0,0,0,0,0,0.186480934482706,-0.00172377101999528,0.207773935156544,0.054530184537229,0.054530184537229,0,0,-0.0195663846457209,0.065434062021982,0.109060369074458,0.064294311410122,0,0,0,0,0.182529634327494,0,0,0,0.134335312058353,0.13842656085409,-0.186524966268941,0,0,0,-0.27695440160179,0,0,0,0,-0.0109644858906881,0,0.109060369074458,0.397621283275821,0,-0.358667909300741,0.187088744569864,0,-0.0491523209173674,-1.06147710453481,0.432620855090667,0,0,-0.15228676271543,0,0,-0.173798783954971,0.0134102834296539,0,0.152015388045699,0,0,0,0,0.385128227276932,0,0.219101983844799,0,0,0,0,0,0,0,0.109060369074458,0,0,0.196157017907754,0.0403918093534783,-0.0922240566585104,-0.0640596705171081,0,0,0,0,0,0,0.0304241614583259,-0.127160921100428,0.000966085697011295,0,0,0,0,0,0,0,0.336368866087702,0.807365565316881,0,0,0,0,-0.0969923612426051,0,0,0,0,-0.564807121153884,0,0,-0.277362132193514,0,0,0,0,0,0,0,0,0,0,0,0,0,0.310097410209107,-0.155890027137593,0,0,0,0,0,0,0,-0.27483329820609,0,0,0,0,0.216906977123987,0,0,0,0.328620111455398,0,0.170473320746578,0.109060369074458,0,0,0,0,0,0.098078508953877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.254595592357345,0.0521083571826435,0.0810774347342776,0.0582519585862578,0,0,-0.178098168095813,0,0,0,0,0,0,0.134055251387955,0.0362410319448183,0,0,0,0,0,0,0.054530184537229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.292992663142766,-0.0348580438050884,0,0,0,0,0,0,0,-0.0979578962680575,0,0,0.140381011211703,0,0,0,0,0.152955021699246,0,-0.122581165240227,-0.0069356876218075,0.0788684688248914,0,0,0,-0.054385572482455,0,0,0.0647839386957784,0,0.0422829816555565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0.109060369074458,0,0,0,0,0,0,0,0,0,0.054530184537229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.433416496244555,0,0,0,0,0,0,0,0.0640671456784605,0.196157017907754,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0800184682686384,0,0,0,-0.104025860582586,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0746375161174302,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0482220752390542,0,-0.0843766322300271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.281833418399007,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0,0.0106500111520237,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.144550239214047,0,0,-0.121871460815201,0,0,0,0,0,0,0,0,0,0,0,0,-0.0613201791501264,0,0,0,0,0,0,0,0,0,0,0.0606303268487891,0,0,0,0,0,0,0,0,1.13227489200524,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.054530184537229,-0.0653332903093407,-0.0889418739803886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.216708248122278,0,0,0,0,0,0,0,0,0,0,0,0.054530184537229,0,0.0491733267680735,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0248332621645532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18739838700134,0,0,0,0,0,0,0,0,0.268670624116706,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0759234362717838,0,0,0,0.216708248122278,0,0,0,0,0,0,0.330791350832964,0,0.109060369074458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0121639702220999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0229011022281542,0,0,0,0,0,0,0,0.262432230279932,0,0,0,0,0,0,0,0,0.585985326285532,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.074338725436315,0,0.098078508953877,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0228135984888456,0,0,0.196157017907754,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.054530184537229,0,0,0,-0.0797419986649781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0988133906946568,0,0.165395675416482,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.00459220201564248,0,0,0,0,0,0,0,0,0,0,-0.0412500915278073,0.098078508953877,0,0,0,0.189954824934001,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0553659769134001,0,0.109060369074458,0.0667729005973419,0,-0.0627365812683285,-0.241572302661726,0,0,0,0,0,0.0409183940458311,0,0,0,0,0,0,0,0,0,0,0.0689841213499262,0,0,-0.0282781333494365,0,0,0.878849269728429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0114014712062601,0,0,-0.128404064405309,0,0,-0.102529292682543,0,0,-0.00704498816386034,0,0,-0.174992895090299,-0.199368789777948,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139298071745155,-0.269475635594569,0,0.26713433420774,0,0,0.673190092488075,0,0.165395675416482,0,0.0131009617008709
Line 100: Line 100:
|top_motifs=ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.37343224293;HOX{A6,A7,B6,B7}:2.07078847256;bHLH_family:1.83142634605;HOX{A4,D4}:1.67922931482;ZNF423:1.61210134318;ESRRA:1.33097013593;NANOG:1.19540130996;ELK1,4_GABP{A,B1}:1.15393264956;TFDP1:1.11401288493;TEF:1.08630948295;AHR_ARNT_ARNT2:1.06009416828;NR5A1,2:0.87978996267;NR3C1:0.851626391476;EVI1:0.811499633779;PAX4:0.809357264858;PAX6:0.779901047559;PAX5:0.775168998992;IKZF2:0.748458850681;FOX{I1,J2}:0.724547190481;PAX8:0.711561981703;TOPORS:0.70646114372;LHX3,4:0.701910992109;EN1,2:0.686538216479;FOXA2:0.673492599128;ONECUT1,2:0.659621245399;BPTF:0.65838667035;HES1:0.639362705753;CRX:0.613138815547;NKX6-1,2:0.585851009645;RBPJ:0.580448376198;FOXL1:0.570756791517;UFEwm:0.560625598742;BREu{core}:0.539024356857;GFI1:0.499737531923;NKX2-1,4:0.495635456344;YY1:0.490088860515;EGR1..3:0.488524462073;XCPE1{core}:0.484661062084;AIRE:0.475836587301;HIF1A:0.44460519506;FOXQ1:0.440025607545;XBP1:0.43628338353;SREBF1,2:0.426850987031;ARID5B:0.420533378455;ZBTB6:0.414063662812;CDC5L:0.41331394336;SOX5:0.399084224329;ZNF143:0.397067611714;ZIC1..3:0.392328555777;NFIX:0.380260947869;ZNF384:0.368394826854;GATA4:0.361823214139;ZBTB16:0.352123705199;RREB1:0.322282797668;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.322159922596;SOX2:0.317347074086;CUX2:0.305920937585;PBX1:0.304542522781;HOXA9_MEIS1:0.300757830805;ATF4:0.289335840619;POU3F1..4:0.263877234771;ALX4:0.248553282209;RFX2..5_RFXANK_RFXAP:0.244361134229;NFE2L1:0.23869967615;NRF1:0.205891405906;ZFP161:0.188310155416;FOXP1:0.184966374706;LMO2:0.178551968718;HBP1_HMGB_SSRP1_UBTF:0.177060741193;TLX2:0.172097713652;FOX{D1,D2}:0.167443151863;RXR{A,B,G}:0.153265228635;CEBPA,B_DDIT3:0.127273046207;NKX3-1:0.121304622505;JUN:0.113912425434;PITX1..3:0.110517672369;FOXM1:0.0933226441596;RFX1:0.0902209953717;FOXD3:0.0893729261184;POU6F1:0.0739355336445;TFAP2B:0.0535267729241;TP53:0.0489144937688;REST:0.0417778958411;SOX17:0.0416673185796;DMAP1_NCOR{1,2}_SMARC:0.0391526979801;SOX{8,9,10}:0.0344597520202;OCT4_SOX2{dimer}:0.00809503481572;MED-1{core}:0.0057088793824;HNF4A_NR2F1,2:-0.0141181341825;PRRX1,2:-0.0155250726612;HIC1:-0.0261675821164;SP1:-0.03692440747;NFIL3:-0.0465668881814;DBP:-0.0685506718946;HOX{A5,B5}:-0.0707706630713;ELF1,2,4:-0.0762776928855;ATF5_CREB3:-0.0857778062581;CREB1:-0.087254138897;HAND1,2:-0.0891361513971;PAX2:-0.0898647122325;TBX4,5:-0.0962906257528;PAX3,7:-0.0966745464897;NKX2-2,8:-0.112557374682;BACH2:-0.134552722684;FOX{F1,F2,J1}:-0.140664391984;TLX1..3_NFIC{dimer}:-0.150635581635;NHLH1,2:-0.168323124818;STAT5{A,B}:-0.178161637186;NFY{A,B,C}:-0.179268588627;NKX2-3_NKX2-5:-0.181403833905;PATZ1:-0.189259956966;LEF1_TCF7_TCF7L1,2:-0.192796357291;ATF6:-0.207276538714;RUNX1..3:-0.209219329408;E2F1..5:-0.209538492195;SPIB:-0.213669240876;MTE{core}:-0.222457505029;ALX1:-0.229280976763;GTF2A1,2:-0.229674011822;STAT2,4,6:-0.244264621557;TEAD1:-0.245307341989;HNF1A:-0.25191302868;MYFfamily:-0.260547838726;KLF4:-0.26073906378;ADNP_IRX_SIX_ZHX:-0.260900479361;FOSL2:-0.277137195627;ESR1:-0.280757083363;MYOD1:-0.289017718177;ATF2:-0.291468740964;MYB:-0.303842083126;STAT1,3:-0.310090084686;GFI1B:-0.314260968484;NFE2:-0.320497245344;POU1F1:-0.323235070105;IKZF1:-0.347124438975;TFCP2:-0.348224954548;GTF2I:-0.34951676638;SPI1:-0.356080479078;TFAP2{A,C}:-0.362567797914;GZF1:-0.369054878871;FOS_FOS{B,L1}_JUN{B,D}:-0.37276748549;FOXP3:-0.377573351126;MTF1:-0.378214740736;HLF:-0.396637125141;NANOG{mouse}:-0.401262953764;PRDM1:-0.413315049475;SNAI1..3:-0.436157733919;PDX1:-0.43977424497;FOXN1:-0.444000668276;MEF2{A,B,C,D}:-0.467622265195;MAZ:-0.479381306435;EBF1:-0.486054571611;HSF1,2:-0.497757689986;IRF1,2:-0.510416570901;NKX3-2:-0.517919520746;PAX1,9:-0.519602901645;NFKB1_REL_RELA:-0.551777836184;FOXO1,3,4:-0.559729812327;IRF7:-0.560603199109;ETS1,2:-0.621825434445;NFE2L2:-0.633540963746;MAFB:-0.639115166042;ZNF148:-0.642865143607;HMGA1,2:-0.649297368287;MYBL2:-0.654633008869;ZNF238:-0.686006920323;CDX1,2,4:-0.686484769213;AR:-0.689295109735;NR6A1:-0.6993666323;NFATC1..3:-0.706212799309;GLI1..3:-0.753716774728;MZF1:-0.754828556065;POU2F1..3:-0.771512878535;RORA:-0.791077542574;VSX1,2:-0.823682208658;ZEB1:-0.851424597417;GCM1,2:-0.86554080268;GATA6:-0.867578165017;NR1H4:-0.938371033524;PPARG:-1.00064126417;RXRA_VDR{dimer}:-1.00939420351;TBP:-1.02977817456;T:-1.04156340259;HMX1:-1.05300652565;EP300:-1.07559579087;TAL1_TCF{3,4,12}:-1.15632132015;SMAD1..7,9:-1.2091204792;SPZ1:-1.22962313447;SRF:-1.27667213936;POU5F1:-1.38627104941;TGIF1:-1.42694983107;TFAP4:-1.627150752
|top_motifs=ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.37343224293;HOX{A6,A7,B6,B7}:2.07078847256;bHLH_family:1.83142634605;HOX{A4,D4}:1.67922931482;ZNF423:1.61210134318;ESRRA:1.33097013593;NANOG:1.19540130996;ELK1,4_GABP{A,B1}:1.15393264956;TFDP1:1.11401288493;TEF:1.08630948295;AHR_ARNT_ARNT2:1.06009416828;NR5A1,2:0.87978996267;NR3C1:0.851626391476;EVI1:0.811499633779;PAX4:0.809357264858;PAX6:0.779901047559;PAX5:0.775168998992;IKZF2:0.748458850681;FOX{I1,J2}:0.724547190481;PAX8:0.711561981703;TOPORS:0.70646114372;LHX3,4:0.701910992109;EN1,2:0.686538216479;FOXA2:0.673492599128;ONECUT1,2:0.659621245399;BPTF:0.65838667035;HES1:0.639362705753;CRX:0.613138815547;NKX6-1,2:0.585851009645;RBPJ:0.580448376198;FOXL1:0.570756791517;UFEwm:0.560625598742;BREu{core}:0.539024356857;GFI1:0.499737531923;NKX2-1,4:0.495635456344;YY1:0.490088860515;EGR1..3:0.488524462073;XCPE1{core}:0.484661062084;AIRE:0.475836587301;HIF1A:0.44460519506;FOXQ1:0.440025607545;XBP1:0.43628338353;SREBF1,2:0.426850987031;ARID5B:0.420533378455;ZBTB6:0.414063662812;CDC5L:0.41331394336;SOX5:0.399084224329;ZNF143:0.397067611714;ZIC1..3:0.392328555777;NFIX:0.380260947869;ZNF384:0.368394826854;GATA4:0.361823214139;ZBTB16:0.352123705199;RREB1:0.322282797668;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.322159922596;SOX2:0.317347074086;CUX2:0.305920937585;PBX1:0.304542522781;HOXA9_MEIS1:0.300757830805;ATF4:0.289335840619;POU3F1..4:0.263877234771;ALX4:0.248553282209;RFX2..5_RFXANK_RFXAP:0.244361134229;NFE2L1:0.23869967615;NRF1:0.205891405906;ZFP161:0.188310155416;FOXP1:0.184966374706;LMO2:0.178551968718;HBP1_HMGB_SSRP1_UBTF:0.177060741193;TLX2:0.172097713652;FOX{D1,D2}:0.167443151863;RXR{A,B,G}:0.153265228635;CEBPA,B_DDIT3:0.127273046207;NKX3-1:0.121304622505;JUN:0.113912425434;PITX1..3:0.110517672369;FOXM1:0.0933226441596;RFX1:0.0902209953717;FOXD3:0.0893729261184;POU6F1:0.0739355336445;TFAP2B:0.0535267729241;TP53:0.0489144937688;REST:0.0417778958411;SOX17:0.0416673185796;DMAP1_NCOR{1,2}_SMARC:0.0391526979801;SOX{8,9,10}:0.0344597520202;OCT4_SOX2{dimer}:0.00809503481572;MED-1{core}:0.0057088793824;HNF4A_NR2F1,2:-0.0141181341825;PRRX1,2:-0.0155250726612;HIC1:-0.0261675821164;SP1:-0.03692440747;NFIL3:-0.0465668881814;DBP:-0.0685506718946;HOX{A5,B5}:-0.0707706630713;ELF1,2,4:-0.0762776928855;ATF5_CREB3:-0.0857778062581;CREB1:-0.087254138897;HAND1,2:-0.0891361513971;PAX2:-0.0898647122325;TBX4,5:-0.0962906257528;PAX3,7:-0.0966745464897;NKX2-2,8:-0.112557374682;BACH2:-0.134552722684;FOX{F1,F2,J1}:-0.140664391984;TLX1..3_NFIC{dimer}:-0.150635581635;NHLH1,2:-0.168323124818;STAT5{A,B}:-0.178161637186;NFY{A,B,C}:-0.179268588627;NKX2-3_NKX2-5:-0.181403833905;PATZ1:-0.189259956966;LEF1_TCF7_TCF7L1,2:-0.192796357291;ATF6:-0.207276538714;RUNX1..3:-0.209219329408;E2F1..5:-0.209538492195;SPIB:-0.213669240876;MTE{core}:-0.222457505029;ALX1:-0.229280976763;GTF2A1,2:-0.229674011822;STAT2,4,6:-0.244264621557;TEAD1:-0.245307341989;HNF1A:-0.25191302868;MYFfamily:-0.260547838726;KLF4:-0.26073906378;ADNP_IRX_SIX_ZHX:-0.260900479361;FOSL2:-0.277137195627;ESR1:-0.280757083363;MYOD1:-0.289017718177;ATF2:-0.291468740964;MYB:-0.303842083126;STAT1,3:-0.310090084686;GFI1B:-0.314260968484;NFE2:-0.320497245344;POU1F1:-0.323235070105;IKZF1:-0.347124438975;TFCP2:-0.348224954548;GTF2I:-0.34951676638;SPI1:-0.356080479078;TFAP2{A,C}:-0.362567797914;GZF1:-0.369054878871;FOS_FOS{B,L1}_JUN{B,D}:-0.37276748549;FOXP3:-0.377573351126;MTF1:-0.378214740736;HLF:-0.396637125141;NANOG{mouse}:-0.401262953764;PRDM1:-0.413315049475;SNAI1..3:-0.436157733919;PDX1:-0.43977424497;FOXN1:-0.444000668276;MEF2{A,B,C,D}:-0.467622265195;MAZ:-0.479381306435;EBF1:-0.486054571611;HSF1,2:-0.497757689986;IRF1,2:-0.510416570901;NKX3-2:-0.517919520746;PAX1,9:-0.519602901645;NFKB1_REL_RELA:-0.551777836184;FOXO1,3,4:-0.559729812327;IRF7:-0.560603199109;ETS1,2:-0.621825434445;NFE2L2:-0.633540963746;MAFB:-0.639115166042;ZNF148:-0.642865143607;HMGA1,2:-0.649297368287;MYBL2:-0.654633008869;ZNF238:-0.686006920323;CDX1,2,4:-0.686484769213;AR:-0.689295109735;NR6A1:-0.6993666323;NFATC1..3:-0.706212799309;GLI1..3:-0.753716774728;MZF1:-0.754828556065;POU2F1..3:-0.771512878535;RORA:-0.791077542574;VSX1,2:-0.823682208658;ZEB1:-0.851424597417;GCM1,2:-0.86554080268;GATA6:-0.867578165017;NR1H4:-0.938371033524;PPARG:-1.00064126417;RXRA_VDR{dimer}:-1.00939420351;TBP:-1.02977817456;T:-1.04156340259;HMX1:-1.05300652565;EP300:-1.07559579087;TAL1_TCF{3,4,12}:-1.15632132015;SMAD1..7,9:-1.2091204792;SPZ1:-1.22962313447;SRF:-1.27667213936;POU5F1:-1.38627104941;TGIF1:-1.42694983107;TFAP4:-1.627150752
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10465-106H6;search_select_hide=table117:FF:10465-106H6
}}
}}

Latest revision as of 14:25, 3 June 2020

Name:melanoma cell line:G-361
Species:Human (Homo sapiens)
Library ID:CNhs11254
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueskin
dev stageNA
sexmale
age31
cell typemelanocyte
cell lineG-361
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005172
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11254 CAGE DRX007931 DRR008803
Accession ID Hg19

Library idBAMCTSS
CNhs11254 DRZ000228 DRZ001613
Accession ID Hg38

Library idBAMCTSS
CNhs11254 DRZ011578 DRZ012963
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.149
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.01
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19-0.0234
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.495
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.146
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary1.184
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0775
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.384
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.109
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.0383
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.0995
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90.358
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0.196
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11254

Jaspar motifP-value
MA0002.20.00399
MA0003.10.0194
MA0004.17.45182e-4
MA0006.10.131
MA0007.10.39
MA0009.10.189
MA0014.10.319
MA0017.10.0816
MA0018.20.0755
MA0019.10.835
MA0024.10.474
MA0025.10.874
MA0027.10.745
MA0028.14.93708e-5
MA0029.10.544
MA0030.10.919
MA0031.10.571
MA0035.20.807
MA0038.10.222
MA0039.20.482
MA0040.10.0991
MA0041.10.0762
MA0042.10.124
MA0043.10.893
MA0046.10.0444
MA0047.20.855
MA0048.10.0843
MA0050.10.00246
MA0051.10.249
MA0052.10.0133
MA0055.10.0235
MA0057.10.97
MA0058.12.13197e-5
MA0059.15.75602e-5
MA0060.10.233
MA0061.19.99253e-4
MA0062.23.27342e-7
MA0065.20.813
MA0066.10.436
MA0067.10.354
MA0068.10.0504
MA0069.10.992
MA0070.10.155
MA0071.10.74
MA0072.10.631
MA0073.10.907
MA0074.10.521
MA0076.12.91774e-7
MA0077.10.884
MA0078.10.449
MA0079.20.198
MA0080.27.69283e-10
MA0081.10.834
MA0083.17.42404e-5
MA0084.10.967
MA0087.10.875
MA0088.10.0623
MA0090.10.154
MA0091.10.156
MA0092.10.231
MA0093.11.3117e-4
MA0099.24.74729e-9
MA0100.10.745
MA0101.10.0149
MA0102.20.00112
MA0103.10.149
MA0104.25.79303e-6
MA0105.15.16167e-4
MA0106.10.129
MA0107.17.65465e-4
MA0108.25.87856e-7
MA0111.10.798
MA0112.20.0314
MA0113.10.156
MA0114.10.278
MA0115.10.781
MA0116.10.008
MA0117.10.0988
MA0119.10.665
MA0122.10.0445
MA0124.10.663
MA0125.10.613
MA0131.10.107
MA0135.10.0874
MA0136.15.24631e-6
MA0137.20.166
MA0138.20.913
MA0139.10.525
MA0140.10.377
MA0141.10.114
MA0142.10.0823
MA0143.10.968
MA0144.10.0199
MA0145.10.111
MA0146.10.71
MA0147.12.29074e-6
MA0148.10.956
MA0149.10.5
MA0150.13.10234e-4
MA0152.10.972
MA0153.10.653
MA0154.10.0555
MA0155.10.154
MA0156.10.0423
MA0157.10.961
MA0159.10.626
MA0160.10.622
MA0162.10.0118
MA0163.10.228
MA0164.10.753
MA0258.10.223
MA0259.16.70991e-4



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11254

Novel motifP-value
10.929
100.922
1000.546
1010.854
1020.233
1030.974
1040.311
1050.0668
1060.0641
1070.093
1080.228
1090.772
110.551
1100.594
1110.919
1120.94
1130.0754
1140.489
1150.822
1160.649
1170.833
1180.325
1190.214
120.0858
1200.672
1210.0954
1220.999
1230.483
1240.743
1250.927
1260.759
1270.193
1280.743
1290.267
130.619
1300.54
1310.0208
1320.984
1330.591
1340.474
1350.118
1360.0102
1370.582
1380.773
1390.558
140.605
1400.182
1410.393
1420.0934
1430.865
1440.868
1450.42
1460.333
1470.847
1480.5
1490.178
150.91
1500.767
1510.574
1520.117
1530.853
1540.799
1550.345
1560.518
1570.992
1580.245
1590.236
160.894
1600.174
1610.337
1620.535
1630.406
1640.787
1650.087
1660.213
1670.0229
1680.743
1690.0604
170.658
180.442
190.112
20.0274
200.0646
210.65
220.419
230.0888
240.837
250.159
260.85
270.193
280.859
290.478
30.817
300.103
310.42
320.0166
330.925
340.24
350.952
360.632
370.59
380.427
390.936
40.802
400.175
410.194
420.52
430.256
440.399
450.0978
460.448
470.839
480.778
490.365
50.334
500.399
510.39
520.0796
530.433
540.672
550.987
560.525
570.235
580.068
590.167
60.171
600.0643
610.432
620.0633
630.679
640.95
650.258
660.219
670.575
680.439
690.956
70.293
700.865
710.721
720.362
730.408
740.916
750.553
760.267
770.0854
780.266
790.407
80.809
800.0457
810.717
820.596
830.974
840.0396
850.317
860.131
870.492
880.456
890.0193
90.262
900.171
910.484
920.173
930.203
940.781
950.735
960.17
970.732
980.964
990.899



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11254


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
1909 (melanoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001003 (skin epidermis)
0002097 (skin of body)
0002199 (integument)
0000483 (epithelium)
0000479 (tissue)
0004121 (ectoderm-derived structure)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000119 (cell layer)
0003102 (surface structure)
0007376 (outer epithelium)
0010371 (ecto-epithelium)
0010317 (germ layer / neural crest derived structure)
0002416 (integumental system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100849 (melanoma cell line sample)
0101584 (G-361 cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=FF:10465-106H6&oldid=4576060"