FF:10471-106I3: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468 | |DRA_sample_Accession=CAGE@SAMD00005261 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |accession_numbers=CAGE;DRX007991;DRR008863;DRZ000288;DRZ001673;DRZ011638;DRZ013023 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002113,UBERON:0002100,UBERON:0000062,UBERON:0000475,UBERON:0006554,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003103,UBERON:0009569,UBERON:0000489,UBERON:0005177,UBERON:0005172,UBERON:0005173,UBERON:0011143,UBERON:0001008,UBERON:0002417,UBERON:0000916 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:1000497,CL:0002518 | |||
|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:7,DOID:305 | |ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:7,DOID:305 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0100067,FF:0101120,FF:0103192,FF:0100383,FF:0103732 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr12:26277817..26277863,-!p2@BHLHE41!2.13!177.25!BHLHE41;;chr7:27205106..27205134,-!p2@HOXA9!1.92!83.13!HOXA9;;chr7:27205136..27205164,-!p1@HOXA9!1.76!56.85!HOXA9;;chr7:27224842..27224872,-!p1@HOXA11!1.73!53.03!HOXA11;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.71!50.16!POU3F3;;chr1:201979703..201979721,+!p2@ELF3!1.68!46.82!ELF3;;chr2:176969228..176969260,+!p1@HOXD11!1.68!46.34!HOXD11;;chr12:26277798..26277809,-!p5@BHLHE41!1.51!31.05!BHLHE41;;chr1:201979743..201979762,+!p1@ELF3!1.48!29.14!ELF3;;chr2:114036488..114036504,-!p1@PAX8!1.40!24.37!PAX8;;chr17:36105042..36105060,-!p1@HNF1B!1.38!22.93!HNF1B;;chr5:142780189..142780223,-!p6@NR3C1!1.33!20.54!NR3C1;;chr7:27224795..27224840,-!p2@HOXA11!1.32!20.07!HOXA11;;chr5:142780237..142780261,-!p7@NR3C1!1.27!17.68!NR3C1;;chr2:176994408..176994492,+!p1@HOXD8!1.27!17.68!HOXD8;;chr16:67198633..67198671,+!p1@HSF4!1.26!17.20!HSF4;;chr7:27213893..27213954,-!p1@HOXA10!1.24!16.24!HOXA10;;chr8:28243813..28243839,-!p4@ZNF395!1.22!27.71!ZNF395;;chr10:102505493..102505546,+!p2@PAX2!1.21!15.29!PAX2;;chrY:21906594..21906622,-!p1@KDM5D!1.21!15.29!KDM5D;;chr17:36105074..36105086,-!p2@HNF1B!1.20!14.81!HNF1B;;chr17:46682321..46682362,-!p1@HOXB6!1.20!14.81!HOXB6;;chr7:26191809..26191890,+!p1@NFE2L3!1.19!71.66!NFE2L3;;chr2:176969179..176969226,+!p2@HOXD11!1.17!13.85!HOXD11;;chr6:10412600..10412637,-!p1@TFAP2A!1.14!21.50!TFAP2A;;chr5:142780280..142780294,-!p16@NR3C1!1.14!12.90!NR3C1;;chr3:141043020..141043049,+!p17@ZBTB38!1.14!12.90!ZBTB38;;chr12:26277956..26277980,-!p1@BHLHE41!1.13!44.43!BHLHE41;;chr12:26277929..26277955,-!p3@BHLHE41!1.13!17.68!BHLHE41;;chr11:129245526..129245553,+!p1@BARX2!1.11!11.94!BARX2;;chr17:38465413..38465438,+!p5@RARA!1.10!18.63!RARA;;chr17:46692624..46692659,-!p3@HOXB8!1.10!11.47!HOXB8;;chr17:46622440..46622477,-!p5@HOXB2!1.07!11.94!HOXB2;;chr16:67198683..67198698,+!p2@HSF4!1.06!10.51!HSF4;;chr7:27224911..27224922,-!p5@HOXA11!1.06!10.51!HOXA11;;chr18:6414884..6414942,-!p1@L3MBTL4!1.05!12.90!L3MBTL4;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.04!10.03!POU3F3;;chr17:46688334..46688385,-!p1@HOXB7!1.03!14.33!HOXB7;;chr11:65430554..65430579,-!p3@RELA!1.02!24.37!RELA;;chr1:151804244..151804310,-!p1@RORC!1.02!9.56!RORC;;chr15:67357924..67357952,+!p2@SMAD3!1.01!62.11!SMAD3;;chr15:100106670..100106697,+!p4@MEF2A!1.01!15.29!MEF2A;;chr6:10412392..10412409,-!p4@TFAP2A!1.01!10.51!TFAP2A;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.00!9.56!GLIS1;;chr8:76319850..76319870,+!p4@HNF4G!1.00!9.08!HNF4G;;chr19:45908292..45908374,-!p1@PPP1R13L!0.98!76.92!PPP1R13L;;chr17:36104873..36104903,-!p3@HNF1B!0.98!8.60!HNF1B;;chr2:178128149..178128198,-!p2@NFE2L2!0.97!45.39!NFE2L2;;chrX:106960285..106960299,-!p1@TSC22D3!0.96!222.15!TSC22D3;;chr19:58071201..58071238,-!p1@ZNF550!0.96!29.14!ZNF550;;chr1:221052700..221052730,+!p5@HLX!0.96!12.42!HLX;;chr6:10415276..10415341,-!p2@TFAP2A!0.96!10.03!TFAP2A;;chr15:60884747..60884774,-!p3@RORA!0.94!19.59!RORA;;chr11:129245736..129245758,+!p2@BARX2!0.94!7.64!BARX2;;chr6:10412477..10412490,-!p10@TFAP2A!0.94!7.64!TFAP2A;;chr7:27169801..27169844,-!p2@HOXA4!0.94!7.64!HOXA4;;chr6:1312325..1312340,+!p1@FOXQ1!0.93!12.42!FOXQ1;;chr6:36355513..36355578,-!p2@ETV7!0.93!9.56!ETV7;;chr16:54320646..54320672,-!p2@IRX3!0.91!10.99!IRX3;;chr6:100912785..100912822,-!p1@SIM1!0.91!7.17!SIM1;;chr16:54320675..54320715,-!p1@IRX3!0.90!15.29!IRX3;;chr6:45390002..45390023,+!p6@RUNX2!0.90!12.42!RUNX2;;chr7:28448965..28448994,+!p2@CREB5!0.89!24.84!CREB5;;chr19:37096139..37096170,-!p2@ZNF529!0.89!19.59!ZNF529;;chr11:61520075..61520136,+!p1@C11orf9!0.89!14.81!C11orf9;;chr7:27170359..27170381,-!p1@HOXA4!0.89!6.69!HOXA4;;chr7:27190547..27190591,-!p1@HOXA6!0.89!6.69!HOXA6;;chr10:70320074..70320106,+!p1@TET1!0.88!13.85!TET1;;chr19:53496768..53496799,-!p1@ZNF702P!0.88!10.51!ZNF702P;;chr6:44233252..44233296,-!p1@NFKBIE!0.87!67.36!NFKBIE;;chr7:64023441..64023462,-!p1@ZNF680!0.87!53.99!ZNF680;;chr9:35732647..35732678,+!p2@CREB3!0.87!37.26!CREB3;;chr17:38256877..38256900,-!p2@NR1D1!0.87!21.50!NR1D1;;chr4:87857491..87857519,+!p10@AFF1!0.87!9.08!AFF1;;chr11:47236489..47236567,+!p2@DDB2!0.86!91.73!DDB2;;chr18:19749353..19749367,+!p4@GATA6!0.86!6.21!GATA6;;chr1:199996702..199996732,+!p5@NR5A2!0.86!6.21!NR5A2;;chr7:27183291..27183324,-!p1@HOXA5!0.86!6.21!HOXA5;;chr17:70117153..70117174,+!p1@SOX9!0.85!65.93!SOX9;;chr4:185395633..185395651,-!p2@IRF2!0.85!10.03!IRF2;;chr5:131826457..131826514,-!p1@IRF1!0.84!248.43!IRF1;;chr10:111967345..111967422,+!p1@MXI1!0.84!103.67!MXI1;;chr17:38256822..38256851,-!p1@NR1D1!0.84!49.21!NR1D1;;chr7:101459230..101459243,+!p2@CUX1!0.84!31.05!CUX1;;chr8:72756667..72756736,-!p2@MSC!0.84!9.56!MSC;;chr12:57914286..57914304,-!p1@DDIT3!0.83!225.50!DDIT3;;chr15:60884706..60884743,-!p1@RORA!0.83!31.53!RORA;;chr10:44101902..44101932,+!p2@ZNF485!0.83!12.42!ZNF485;;chr5:124082470..124082483,-!p8@ZNF608!0.83!5.73!ZNF608;;chr5:142779999..142780026,-!p20@NR3C1!0.83!5.73!NR3C1;;chr8:76319876..76319926,+!p1@HNF4G!0.83!5.73!HNF4G;;chr19:45579725..45579743,-!p1@ZNF296!0.82!26.75!ZNF296;;chr19:57752022..57752108,+!p1@ZNF805!0.82!26.28!ZNF805;;chr19:53193731..53193767,-!p1@ZNF83!0.81!52.55!ZNF83;;chr5:124084493..124084524,-!p2@ZNF608!0.81!12.90!ZNF608;;chr5:134369905..134369972,-!p1@PITX1!0.81!8.60!PITX1;;chr8:72756637..72756664,-!p3@MSC!0.81!6.21!MSC;;chr9:114287433..114287513,+!p1@ZNF483!0.80!14.81!ZNF483;;chr8:67525473..67525518,-!p1@MYBL1!0.80!12.90!MYBL1;;chr1:23696308..23696339,-!p2@ZNF436!0.80!11.94!ZNF436;;chr5:124084466..124084484,-!p6@ZNF608!0.80!5.26!ZNF608;;chr3:141043050..141043063,+!p22@ZBTB38!0.80!5.26!ZBTB38;;chr4:299227..299272,-!p1@ZNF732!0.80!5.26!ZNF732;;chr15:96874012..96874042,+!p2@NR2F2!0.79!50.64!NR2F2;;chr19:49140609..49140643,-!p1@DBP!0.79!31.53!DBP;;chr19:57019215..57019250,+!p1@ZNF471!0.79!8.12!ZNF471;;chr1:8938709..8938720,-!p3@ENO1!0.78!268.50!ENO1;;chr19:45252008..45252024,+!p2@BCL3!0.78!17.68!BCL3;;chr8:28243785..28243799,-!p6@ZNF395!0.78!6.21!ZNF395;;chr2:46524897..46524911,+!p2@EPAS1!0.77!14.81!EPAS1;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!0.77!10.99!ZNF395;;chr5:72744445..72744466,-!p2@FOXD1!0.77!8.60!FOXD1;;chr11:47236584..47236679,+!p1@DDB2!0.76!56.85!DDB2;;chr6:43337180..43337244,-!p1@ZNF318!0.76!20.07!ZNF318;;chr10:98592674..98592724,+!p2@LCOR!0.76!10.03!LCOR;;chr16:54320158..54320200,-!p5@IRX3!0.76!7.17!IRX3;;chr17:46622229..46622257,-!p6@HOXB2!0.76!5.73!HOXB2;;chr12:54378923..54378966,+!p1@HOXC10!0.76!4.78!HOXC10;;chr2:176969097..176969109,+!p3@HOXD11!0.76!4.78!HOXD11;;chr5:172662197..172662216,-!p1@NKX2-5!0.76!4.78!NKX2-5;;chr6:1612300..1612324,+!p3@FOXC1!0.76!4.78!FOXC1;;chr7:27219849..27219867,-!p6@HOXA10!0.76!4.78!HOXA10;;chr17:46655730..46655791,-!p1@HOXB4!0.75!12.42!HOXB4;;chr6:45390025..45390076,+!p2@RUNX2!0.75!11.94!RUNX2;;chr7:27135591..27135658,-!p1@HOXA1!0.75!9.56!HOXA1;;chr6:144329531..144329546,-!p5@PLAGL1!0.75!7.64!PLAGL1;;chr2:113057415..113057477,+!p3@ZC3H6!0.75!6.21!ZC3H6;;chr12:66218003..66218018,+!p9@HMGA2!0.75!5.73!HMGA2;;chr3:178789622..178789633,-!p3@ZMAT3!0.74!9.08!ZMAT3;;chr15:96875041..96875052,+!p17@NR2F2!0.74!6.69!NR2F2;;chr17:38465441..38465481,+!p6@RARA!0.74!5.73!RARA;;chr7:44143925..44143970,+!p1@AEBP1!0.73!109.41!AEBP1;;chr5:139494712..139494759,+!p5@PURA!0.72!7.64!PURA;;chr10:102495147..102495159,+!p4@PAX2!0.72!4.30!PAX2;;chr16:51185172..51185197,-!p1@SALL1!0.72!4.30!SALL1;;chr18:19749504..19749515,+!p5@GATA6!0.72!4.30!GATA6;;chr19:16435423..16435484,+!p5@KLF2!0.72!4.30!KLF2;;chr19:44952635..44952668,-!p1@ZNF229!0.71!22.93!ZNF229;;chr21:36421535..36421610,-!p2@RUNX1!0.71!16.24!RUNX1;;chr12:72057747..72057854,+!p4@THAP2!0.71!12.42!THAP2;;chr6:45389791..45389832,+!p3@RUNX2!0.71!11.47!RUNX2;;chr1:23696448..23696453,-!p5@ZNF436!0.71!5.26!ZNF436;;chr7:64363638..64363667,+!p1@ZNF273!0.70!22.45!ZNF273;;chr2:148778973..148779035,+!p3@MBD5!0.70!11.47!MBD5;;chr6:28109608..28109693,+!p1@ZNF192!0.69!75.01!ZNF192;;chr19:52598958..52599026,-!p1@ZNF841!0.69!42.04!ZNF841;;chr9:86594530..86594564,-!p@chr9:86594530..86594564,-!0.69!16.72!HNRPK;;chr8:123793959..123793977,+!p4@ZHX2!0.69!8.12!ZHX2;;chr19:12551785..12551823,-!p1@ZNF443!0.69!6.69!ZNF443;;chr19:38085768..38085821,+!p1@ZNF540!0.69!6.21!ZNF540;;chr7:6655225..6655279,+!p1@ENST00000457543!0.69!6.21!ZNF853;;chr19:37407411..37407451,+!p3@ZNF568!0.69!5.26!ZNF568;;chr6:1612248..1612281,+!p2@FOXC1!0.69!4.30!FOXC1;;chr7:92076740..92076834,+!p1@GATAD1!0.68!109.41!GATAD1;;chr19:53400852..53400962,-!p1@ZNF320!0.68!43.95!ZNF320;;chr5:142784003..142784065,-!p2@NR3C1!0.68!35.35!NR3C1;;chr6:126240380..126240430,+!p2@NCOA7!0.68!10.99!NCOA7;;chr19:57078972..57079027,+!p2@ZNF470!0.68!6.21!ZNF470;;chr4:106155658..106155662,+!p5@TET2!0.68!4.78!TET2;;chr2:105470599..105470610,+!p@chr2:105470599..105470610,+!0.68!3.82!POU3F3;;chr15:90294087..90294115,-!p1@MESP1!0.68!3.82!MESP1;;chr17:46692318..46692362,-!p5@HOXB8!0.68!3.82!HOXB8;;chr17:46703528..46703549,-!p5@HOXB9!0.68!3.82!HOXB9;;chr10:135122868..135122893,+!p3@ZNF511!0.68!3.82!ZNF511;;chr12:54380404..54380433,+!p3@HOXC10!0.68!3.82!HOXC10;;chr6:10412576..10412599,-!p5@TFAP2A!0.68!3.82!TFAP2A;;chr7:27183263..27183284,-!p2@HOXA5!0.68!3.82!HOXA5;;chr7:27219833..27219845,-!p7@HOXA10!0.68!3.82!HOXA10;;chr9:115819058..115819082,-!p2@ZFP37!0.68!3.82!ZFP37;;chr7:4721885..4721945,+!p1@FOXK1!0.67!129.95!FOXK1;;chr3:169491171..169491205,+!p1@MYNN!0.67!73.57!MYNN;;chrX:101186981..101187030,-!p1@ZMAT1!0.67!13.38!ZMAT1;;chr2:113033141..113033162,+!p2@ZC3H6!0.67!8.60!ZC3H6;;chr3:5021268..5021282,+!p4@BHLHE40!0.67!8.12!BHLHE40;;chr4:185395590..185395627,-!p3@IRF2!0.67!4.78!IRF2;;chr1:158979686..158979745,+!p1@IFI16!0.66!136.64!IFI16;;chr3:141868357..141868393,-!p3@TFDP2!0.66!27.23!TFDP2;;chr10:97890024..97890064,+!p2@ZNF518A!0.66!10.99!ZNF518A;;chr19:37406934..37406949,-!p1@ZNF829!0.66!6.69!ZNF829;;chr12:53835425..53835437,+!p4@PRR13,p5@PCBP2!0.66!6.21!PCBP2;;chr1:203764633..203764674,+!p2@ZC3H11A!0.66!6.21!ZC3H11A;;chr19:44669221..44669274,+!p1@ZNF226,p1@ZNF234!0.65!42.52!ZNF226;;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| |expression_enrichment_score=chr12:26277817..26277863,-!p2@BHLHE41!2.13!177.25!BHLHE41;;chr7:27205106..27205134,-!p2@HOXA9!1.92!83.13!HOXA9;;chr7:27205136..27205164,-!p1@HOXA9!1.76!56.85!HOXA9;;chr7:27224842..27224872,-!p1@HOXA11!1.73!53.03!HOXA11;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!1.71!50.16!POU3F3;;chr1:201979703..201979721,+!p2@ELF3!1.68!46.82!ELF3;;chr2:176969228..176969260,+!p1@HOXD11!1.68!46.34!HOXD11;;chr12:26277798..26277809,-!p5@BHLHE41!1.51!31.05!BHLHE41;;chr1:201979743..201979762,+!p1@ELF3!1.48!29.14!ELF3;;chr2:114036488..114036504,-!p1@PAX8!1.40!24.37!PAX8;;chr17:36105042..36105060,-!p1@HNF1B!1.38!22.93!HNF1B;;chr5:142780189..142780223,-!p6@NR3C1!1.33!20.54!NR3C1;;chr7:27224795..27224840,-!p2@HOXA11!1.32!20.07!HOXA11;;chr5:142780237..142780261,-!p7@NR3C1!1.27!17.68!NR3C1;;chr2:176994408..176994492,+!p1@HOXD8!1.27!17.68!HOXD8;;chr16:67198633..67198671,+!p1@HSF4!1.26!17.20!HSF4;;chr7:27213893..27213954,-!p1@HOXA10!1.24!16.24!HOXA10;;chr8:28243813..28243839,-!p4@ZNF395!1.22!27.71!ZNF395;;chr10:102505493..102505546,+!p2@PAX2!1.21!15.29!PAX2;;chrY:21906594..21906622,-!p1@KDM5D!1.21!15.29!KDM5D;;chr17:36105074..36105086,-!p2@HNF1B!1.20!14.81!HNF1B;;chr17:46682321..46682362,-!p1@HOXB6!1.20!14.81!HOXB6;;chr7:26191809..26191890,+!p1@NFE2L3!1.19!71.66!NFE2L3;;chr2:176969179..176969226,+!p2@HOXD11!1.17!13.85!HOXD11;;chr6:10412600..10412637,-!p1@TFAP2A!1.14!21.50!TFAP2A;;chr5:142780280..142780294,-!p16@NR3C1!1.14!12.90!NR3C1;;chr3:141043020..141043049,+!p17@ZBTB38!1.14!12.90!ZBTB38;;chr12:26277956..26277980,-!p1@BHLHE41!1.13!44.43!BHLHE41;;chr12:26277929..26277955,-!p3@BHLHE41!1.13!17.68!BHLHE41;;chr11:129245526..129245553,+!p1@BARX2!1.11!11.94!BARX2;;chr17:38465413..38465438,+!p5@RARA!1.10!18.63!RARA;;chr17:46692624..46692659,-!p3@HOXB8!1.10!11.47!HOXB8;;chr17:46622440..46622477,-!p5@HOXB2!1.07!11.94!HOXB2;;chr16:67198683..67198698,+!p2@HSF4!1.06!10.51!HSF4;;chr7:27224911..27224922,-!p5@HOXA11!1.06!10.51!HOXA11;;chr18:6414884..6414942,-!p1@L3MBTL4!1.05!12.90!L3MBTL4;;chr2:105470536..105470556,+!p@chr2:105470536..105470556,+!1.04!10.03!POU3F3;;chr17:46688334..46688385,-!p1@HOXB7!1.03!14.33!HOXB7;;chr11:65430554..65430579,-!p3@RELA!1.02!24.37!RELA;;chr1:151804244..151804310,-!p1@RORC!1.02!9.56!RORC;;chr15:67357924..67357952,+!p2@SMAD3!1.01!62.11!SMAD3;;chr15:100106670..100106697,+!p4@MEF2A!1.01!15.29!MEF2A;;chr6:10412392..10412409,-!p4@TFAP2A!1.01!10.51!TFAP2A;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!1.00!9.56!GLIS1;;chr8:76319850..76319870,+!p4@HNF4G!1.00!9.08!HNF4G;;chr19:45908292..45908374,-!p1@PPP1R13L!0.98!76.92!PPP1R13L;;chr17:36104873..36104903,-!p3@HNF1B!0.98!8.60!HNF1B;;chr2:178128149..178128198,-!p2@NFE2L2!0.97!45.39!NFE2L2;;chrX:106960285..106960299,-!p1@TSC22D3!0.96!222.15!TSC22D3;;chr19:58071201..58071238,-!p1@ZNF550!0.96!29.14!ZNF550;;chr1:221052700..221052730,+!p5@HLX!0.96!12.42!HLX;;chr6:10415276..10415341,-!p2@TFAP2A!0.96!10.03!TFAP2A;;chr15:60884747..60884774,-!p3@RORA!0.94!19.59!RORA;;chr11:129245736..129245758,+!p2@BARX2!0.94!7.64!BARX2;;chr6:10412477..10412490,-!p10@TFAP2A!0.94!7.64!TFAP2A;;chr7:27169801..27169844,-!p2@HOXA4!0.94!7.64!HOXA4;;chr6:1312325..1312340,+!p1@FOXQ1!0.93!12.42!FOXQ1;;chr6:36355513..36355578,-!p2@ETV7!0.93!9.56!ETV7;;chr16:54320646..54320672,-!p2@IRX3!0.91!10.99!IRX3;;chr6:100912785..100912822,-!p1@SIM1!0.91!7.17!SIM1;;chr16:54320675..54320715,-!p1@IRX3!0.90!15.29!IRX3;;chr6:45390002..45390023,+!p6@RUNX2!0.90!12.42!RUNX2;;chr7:28448965..28448994,+!p2@CREB5!0.89!24.84!CREB5;;chr19:37096139..37096170,-!p2@ZNF529!0.89!19.59!ZNF529;;chr11:61520075..61520136,+!p1@C11orf9!0.89!14.81!C11orf9;;chr7:27170359..27170381,-!p1@HOXA4!0.89!6.69!HOXA4;;chr7:27190547..27190591,-!p1@HOXA6!0.89!6.69!HOXA6;;chr10:70320074..70320106,+!p1@TET1!0.88!13.85!TET1;;chr19:53496768..53496799,-!p1@ZNF702P!0.88!10.51!ZNF702P;;chr6:44233252..44233296,-!p1@NFKBIE!0.87!67.36!NFKBIE;;chr7:64023441..64023462,-!p1@ZNF680!0.87!53.99!ZNF680;;chr9:35732647..35732678,+!p2@CREB3!0.87!37.26!CREB3;;chr17:38256877..38256900,-!p2@NR1D1!0.87!21.50!NR1D1;;chr4:87857491..87857519,+!p10@AFF1!0.87!9.08!AFF1;;chr11:47236489..47236567,+!p2@DDB2!0.86!91.73!DDB2;;chr18:19749353..19749367,+!p4@GATA6!0.86!6.21!GATA6;;chr1:199996702..199996732,+!p5@NR5A2!0.86!6.21!NR5A2;;chr7:27183291..27183324,-!p1@HOXA5!0.86!6.21!HOXA5;;chr17:70117153..70117174,+!p1@SOX9!0.85!65.93!SOX9;;chr4:185395633..185395651,-!p2@IRF2!0.85!10.03!IRF2;;chr5:131826457..131826514,-!p1@IRF1!0.84!248.43!IRF1;;chr10:111967345..111967422,+!p1@MXI1!0.84!103.67!MXI1;;chr17:38256822..38256851,-!p1@NR1D1!0.84!49.21!NR1D1;;chr7:101459230..101459243,+!p2@CUX1!0.84!31.05!CUX1;;chr8:72756667..72756736,-!p2@MSC!0.84!9.56!MSC;;chr12:57914286..57914304,-!p1@DDIT3!0.83!225.50!DDIT3;;chr15:60884706..60884743,-!p1@RORA!0.83!31.53!RORA;;chr10:44101902..44101932,+!p2@ZNF485!0.83!12.42!ZNF485;;chr5:124082470..124082483,-!p8@ZNF608!0.83!5.73!ZNF608;;chr5:142779999..142780026,-!p20@NR3C1!0.83!5.73!NR3C1;;chr8:76319876..76319926,+!p1@HNF4G!0.83!5.73!HNF4G;;chr19:45579725..45579743,-!p1@ZNF296!0.82!26.75!ZNF296;;chr19:57752022..57752108,+!p1@ZNF805!0.82!26.28!ZNF805;;chr19:53193731..53193767,-!p1@ZNF83!0.81!52.55!ZNF83;;chr5:124084493..124084524,-!p2@ZNF608!0.81!12.90!ZNF608;;chr5:134369905..134369972,-!p1@PITX1!0.81!8.60!PITX1;;chr8:72756637..72756664,-!p3@MSC!0.81!6.21!MSC;;chr9:114287433..114287513,+!p1@ZNF483!0.80!14.81!ZNF483;;chr8:67525473..67525518,-!p1@MYBL1!0.80!12.90!MYBL1;;chr1:23696308..23696339,-!p2@ZNF436!0.80!11.94!ZNF436;;chr5:124084466..124084484,-!p6@ZNF608!0.80!5.26!ZNF608;;chr3:141043050..141043063,+!p22@ZBTB38!0.80!5.26!ZBTB38;;chr4:299227..299272,-!p1@ZNF732!0.80!5.26!ZNF732;;chr15:96874012..96874042,+!p2@NR2F2!0.79!50.64!NR2F2;;chr19:49140609..49140643,-!p1@DBP!0.79!31.53!DBP;;chr19:57019215..57019250,+!p1@ZNF471!0.79!8.12!ZNF471;;chr1:8938709..8938720,-!p3@ENO1!0.78!268.50!ENO1;;chr19:45252008..45252024,+!p2@BCL3!0.78!17.68!BCL3;;chr8:28243785..28243799,-!p6@ZNF395!0.78!6.21!ZNF395;;chr2:46524897..46524911,+!p2@EPAS1!0.77!14.81!EPAS1;;chr8:28347737..28347785,-!p1@FBXO16,p2@ZNF395!0.77!10.99!ZNF395;;chr5:72744445..72744466,-!p2@FOXD1!0.77!8.60!FOXD1;;chr11:47236584..47236679,+!p1@DDB2!0.76!56.85!DDB2;;chr6:43337180..43337244,-!p1@ZNF318!0.76!20.07!ZNF318;;chr10:98592674..98592724,+!p2@LCOR!0.76!10.03!LCOR;;chr16:54320158..54320200,-!p5@IRX3!0.76!7.17!IRX3;;chr17:46622229..46622257,-!p6@HOXB2!0.76!5.73!HOXB2;;chr12:54378923..54378966,+!p1@HOXC10!0.76!4.78!HOXC10;;chr2:176969097..176969109,+!p3@HOXD11!0.76!4.78!HOXD11;;chr5:172662197..172662216,-!p1@NKX2-5!0.76!4.78!NKX2-5;;chr6:1612300..1612324,+!p3@FOXC1!0.76!4.78!FOXC1;;chr7:27219849..27219867,-!p6@HOXA10!0.76!4.78!HOXA10;;chr17:46655730..46655791,-!p1@HOXB4!0.75!12.42!HOXB4;;chr6:45390025..45390076,+!p2@RUNX2!0.75!11.94!RUNX2;;chr7:27135591..27135658,-!p1@HOXA1!0.75!9.56!HOXA1;;chr6:144329531..144329546,-!p5@PLAGL1!0.75!7.64!PLAGL1;;chr2:113057415..113057477,+!p3@ZC3H6!0.75!6.21!ZC3H6;;chr12:66218003..66218018,+!p9@HMGA2!0.75!5.73!HMGA2;;chr3:178789622..178789633,-!p3@ZMAT3!0.74!9.08!ZMAT3;;chr15:96875041..96875052,+!p17@NR2F2!0.74!6.69!NR2F2;;chr17:38465441..38465481,+!p6@RARA!0.74!5.73!RARA;;chr7:44143925..44143970,+!p1@AEBP1!0.73!109.41!AEBP1;;chr5:139494712..139494759,+!p5@PURA!0.72!7.64!PURA;;chr10:102495147..102495159,+!p4@PAX2!0.72!4.30!PAX2;;chr16:51185172..51185197,-!p1@SALL1!0.72!4.30!SALL1;;chr18:19749504..19749515,+!p5@GATA6!0.72!4.30!GATA6;;chr19:16435423..16435484,+!p5@KLF2!0.72!4.30!KLF2;;chr19:44952635..44952668,-!p1@ZNF229!0.71!22.93!ZNF229;;chr21:36421535..36421610,-!p2@RUNX1!0.71!16.24!RUNX1;;chr12:72057747..72057854,+!p4@THAP2!0.71!12.42!THAP2;;chr6:45389791..45389832,+!p3@RUNX2!0.71!11.47!RUNX2;;chr1:23696448..23696453,-!p5@ZNF436!0.71!5.26!ZNF436;;chr7:64363638..64363667,+!p1@ZNF273!0.70!22.45!ZNF273;;chr2:148778973..148779035,+!p3@MBD5!0.70!11.47!MBD5;;chr6:28109608..28109693,+!p1@ZNF192!0.69!75.01!ZNF192;;chr19:52598958..52599026,-!p1@ZNF841!0.69!42.04!ZNF841;;chr9:86594530..86594564,-!p@chr9:86594530..86594564,-!0.69!16.72!HNRPK;;chr8:123793959..123793977,+!p4@ZHX2!0.69!8.12!ZHX2;;chr19:12551785..12551823,-!p1@ZNF443!0.69!6.69!ZNF443;;chr19:38085768..38085821,+!p1@ZNF540!0.69!6.21!ZNF540;;chr7:6655225..6655279,+!p1@ENST00000457543!0.69!6.21!ZNF853;;chr19:37407411..37407451,+!p3@ZNF568!0.69!5.26!ZNF568;;chr6:1612248..1612281,+!p2@FOXC1!0.69!4.30!FOXC1;;chr7:92076740..92076834,+!p1@GATAD1!0.68!109.41!GATAD1;;chr19:53400852..53400962,-!p1@ZNF320!0.68!43.95!ZNF320;;chr5:142784003..142784065,-!p2@NR3C1!0.68!35.35!NR3C1;;chr6:126240380..126240430,+!p2@NCOA7!0.68!10.99!NCOA7;;chr19:57078972..57079027,+!p2@ZNF470!0.68!6.21!ZNF470;;chr4:106155658..106155662,+!p5@TET2!0.68!4.78!TET2;;chr2:105470599..105470610,+!p@chr2:105470599..105470610,+!0.68!3.82!POU3F3;;chr15:90294087..90294115,-!p1@MESP1!0.68!3.82!MESP1;;chr17:46692318..46692362,-!p5@HOXB8!0.68!3.82!HOXB8;;chr17:46703528..46703549,-!p5@HOXB9!0.68!3.82!HOXB9;;chr10:135122868..135122893,+!p3@ZNF511!0.68!3.82!ZNF511;;chr12:54380404..54380433,+!p3@HOXC10!0.68!3.82!HOXC10;;chr6:10412576..10412599,-!p5@TFAP2A!0.68!3.82!TFAP2A;;chr7:27183263..27183284,-!p2@HOXA5!0.68!3.82!HOXA5;;chr7:27219833..27219845,-!p7@HOXA10!0.68!3.82!HOXA10;;chr9:115819058..115819082,-!p2@ZFP37!0.68!3.82!ZFP37;;chr7:4721885..4721945,+!p1@FOXK1!0.67!129.95!FOXK1;;chr3:169491171..169491205,+!p1@MYNN!0.67!73.57!MYNN;;chrX:101186981..101187030,-!p1@ZMAT1!0.67!13.38!ZMAT1;;chr2:113033141..113033162,+!p2@ZC3H6!0.67!8.60!ZC3H6;;chr3:5021268..5021282,+!p4@BHLHE40!0.67!8.12!BHLHE40;;chr4:185395590..185395627,-!p3@IRF2!0.67!4.78!IRF2;;chr1:158979686..158979745,+!p1@IFI16!0.66!136.64!IFI16;;chr3:141868357..141868393,-!p3@TFDP2!0.66!27.23!TFDP2;;chr10:97890024..97890064,+!p2@ZNF518A!0.66!10.99!ZNF518A;;chr19:37406934..37406949,-!p1@ZNF829!0.66!6.69!ZNF829;;chr12:53835425..53835437,+!p4@PRR13,p5@PCBP2!0.66!6.21!PCBP2;;chr1:203764633..203764674,+!p2@ZC3H11A!0.66!6.21!ZC3H11A;;chr19:44669221..44669274,+!p1@ZNF226,p1@ZNF234!0.65!42.52!ZNF226;;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| ||
|ffid_belonging_in_development=UBERON:0003104,UBERON:0003918,UBERON:0007687 | |||
|fonse_cell_line=FF:0100067,FF:0101120 | |fonse_cell_line=FF:0100067,FF:0101120 | ||
|fonse_cell_line_closure=FF:0100067,FF:0101120 | |fonse_cell_line_closure=FF:0100067,FF:0101120 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/renal%2520cell%2520carcinoma%2520cell%2520line%253aTUHR10TKB.CNhs11257.10471-106I3.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/renal%2520cell%2520carcinoma%2520cell%2520line%253aTUHR10TKB.CNhs11257.10471-106I3.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/renal%2520cell%2520carcinoma%2520cell%2520line%253aTUHR10TKB.CNhs11257.10471-106I3.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/renal%2520cell%2520carcinoma%2520cell%2520line%253aTUHR10TKB.CNhs11257.10471-106I3.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/renal%2520cell%2520carcinoma%2520cell%2520line%253aTUHR10TKB.CNhs11257.10471-106I3.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10471-106I3 | |id=FF:10471-106I3 | ||
|is_a=EFO:0002091;;FF:0000210;;FF:0103732 | |is_a=EFO:0002091;;FF:0000210;;FF:0103732 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11257 | |||
|library_id_phase_based=2:CNhs11257 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10471 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10471 | |||
|name=renal cell carcinoma cell line:TUHR10TKB | |name=renal cell carcinoma cell line:TUHR10TKB | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 43: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11257,LSID757,release008,COMPLETED | |profile_hcage=CNhs11257,LSID757,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.193093817912705,0,0,0,0,1.09973094495548,0,-0.107760668121421,-0.282403560576942,0,0,0,0.0776905139722545,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0,0,0,0,-0.0979578962680575,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0.530040612165996,0,0.32184760904782,0,0,0,0,0,0,0,0,0.317399189986693,0,0,0,0,0,0,0.169601464072093,-0.0969923612426051,0,0,0.0722578368589959,0,0,0,0,0,0,0,0,0.169601464072093,0,0,0,0,0.169601464072093,0,0,0,0.137054616027697,0,0,0,0,0,0,0.130513954426052,0,0,0,0.0645773371359741,-0.126396670659822,0,0,0.169601464072093,0,0.193223218771128,-0.138477200800895,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0,0,0,0.140914726548734,0.414166608599921,0,0,0,0,0,0 | |||
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| |||
|rna_box=106 | |rna_box=106 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 58: | Line 78: | ||
|rna_weight_ug=21.69075 | |rna_weight_ug=21.69075 | ||
|sample_age=69 | |sample_age=69 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB1275 | |sample_cell_catalog=RCB1275 | ||
|sample_cell_line=TUHR10TKB | |sample_cell_line=TUHR10TKB | ||
| Line 79: | Line 100: | ||
|top_motifs=HIF1A:2.68710315906;PITX1..3:2.13435977508;ZBTB16:2.10102358872;POU1F1:1.76055324289;FOXQ1:1.61013812806;EVI1:1.57734213398;NKX6-1,2:1.43224850076;PDX1:1.36378147159;AHR_ARNT_ARNT2:1.21850732618;IRF1,2:1.21779983721;NKX2-3_NKX2-5:1.15938870595;LHX3,4:1.14928351728;FOXD3:1.14089107767;HNF1A:1.14061549349;FOXP1:1.13555464927;bHLH_family:1.09149752643;PBX1:1.08408359509;XCPE1{core}:1.07817750875;TEF:1.05173686967;ONECUT1,2:1.01854655465;SP1:1.01461089148;PPARG:0.982890525679;ADNP_IRX_SIX_ZHX:0.981820238914;IKZF2:0.927671074033;ATF6:0.923556445756;DBP:0.914111783597;NR6A1:0.905444188013;RBPJ:0.903534852992;FOX{D1,D2}:0.867946507803;CDX1,2,4:0.848707052257;AIRE:0.848671845211;HES1:0.835560769583;BPTF:0.786931951509;EP300:0.765772132557;IRF7:0.756322477673;HBP1_HMGB_SSRP1_UBTF:0.75313099504;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.733495714072;LMO2:0.718474966602;NFKB1_REL_RELA:0.662480199271;STAT1,3:0.658984431024;HNF4A_NR2F1,2:0.611786421636;CDC5L:0.601614307953;EN1,2:0.599351646118;ELK1,4_GABP{A,B1}:0.574001285028;TP53:0.567856527894;FOX{F1,F2,J1}:0.504547248476;NRF1:0.498109210376;HMGA1,2:0.489974723059;STAT5{A,B}:0.48068657009;TOPORS:0.466830800069;HOXA9_MEIS1:0.429173084407;HSF1,2:0.408449251581;RXRA_VDR{dimer}:0.40753918704;UFEwm:0.388381939079;RREB1:0.385810221979;HAND1,2:0.377908651413;EBF1:0.36713624629;MYB:0.356204082018;ZNF384:0.35545836084;STAT2,4,6:0.322882975649;FOXP3:0.307113054204;ZNF423:0.263222822325;NKX2-2,8:0.251922330083;OCT4_SOX2{dimer}:0.213829941286;RXR{A,B,G}:0.187391491823;ZNF143:0.17773786867;SNAI1..3:0.169655193791;ZIC1..3:0.167001040449;ZEB1:0.15918798158;PAX4:0.146615304436;NKX2-1,4:0.122829153272;FOXO1,3,4:0.0994040011963;TLX2:0.0897752591913;FOXL1:0.038660975004;NFE2:0.0352548868968;MYOD1:0.00941751197285;XBP1:0.00474833313891;POU3F1..4:0.00128864392857;TEAD1:-0.000161216065254;ATF2:-0.0172969849601;PAX1,9:-0.0214919288745;ALX1:-0.0368236991869;RFX1:-0.0470315862884;NR3C1:-0.0718767953962;HOX{A6,A7,B6,B7}:-0.0746660359662;E2F1..5:-0.0909812400388;ALX4:-0.0963984697889;FOSL2:-0.0992333116452;ATF4:-0.100969983788;ATF5_CREB3:-0.116127468792;NFY{A,B,C}:-0.124584256771;PAX6:-0.143127691002;FOXM1:-0.150397378953;BACH2:-0.151552763414;CEBPA,B_DDIT3:-0.159555331645;FOS_FOS{B,L1}_JUN{B,D}:-0.160385724402;PRRX1,2:-0.174990633998;PAX2:-0.207947302912;ZFP161:-0.252198848388;CUX2:-0.285138846224;TAL1_TCF{3,4,12}:-0.285241242981;FOXN1:-0.287570017253;NKX3-1:-0.288316444821;GFI1:-0.291837712187;RORA:-0.302455365854;MTF1:-0.313781516344;POU5F1:-0.321478626304;PRDM1:-0.32779752185;NFE2L1:-0.350308559784;GTF2I:-0.36538008877;ESRRA:-0.374472415907;NR5A1,2:-0.383351724174;MEF2{A,B,C,D}:-0.38563546267;SOX5:-0.387843869893;ZBTB6:-0.409467445496;ZNF148:-0.423737994178;ELF1,2,4:-0.424722090518;NKX3-2:-0.426750680033;RFX2..5_RFXANK_RFXAP:-0.431915119477;KLF4:-0.447997365043;ARID5B:-0.45358767182;NFIL3:-0.459349244266;GFI1B:-0.487249829731;NFE2L2:-0.493328988512;POU6F1:-0.49494550274;SREBF1,2:-0.5057598178;CREB1:-0.514940788232;GATA6:-0.524919798909;TBP:-0.529593991613;PATZ1:-0.541736493353;POU2F1..3:-0.545310820978;HLF:-0.546739831458;IKZF1:-0.559928385459;DMAP1_NCOR{1,2}_SMARC:-0.599297947727;NANOG:-0.601237076533;MZF1:-0.612787968446;TFAP2{A,C}:-0.618799944934;REST:-0.62932270278;GZF1:-0.629329791892;HOX{A5,B5}:-0.634897219271;RUNX1..3:-0.648855073184;SMAD1..7,9:-0.66138664329;NFATC1..3:-0.6659581179;MYFfamily:-0.667620722351;MAZ:-0.669826517296;TBX4,5:-0.687417346248;SPI1:-0.701888005173;MTE{core}:-0.712293576567;HOX{A4,D4}:-0.751958649172;MYBL2:-0.752036924589;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.75543945909;ESR1:-0.762972357254;FOXA2:-0.763074687903;SPIB:-0.772566533247;NFIX:-0.773269400263;SOX2:-0.775856539458;ETS1,2:-0.78936865632;GLI1..3:-0.803100648802;TLX1..3_NFIC{dimer}:-0.824263170864;HIC1:-0.82732554917;LEF1_TCF7_TCF7L1,2:-0.831038855709;AR:-0.832522398994;SOX{8,9,10}:-0.833329823812;TGIF1:-0.900729865214;PAX3,7:-0.987188775378;SRF:-1.00254402562;TFAP2B:-1.01613472456;YY1:-1.08017476666;JUN:-1.11982517804;PAX5:-1.12017232417;BREu{core}:-1.12404760328;SOX17:-1.12868413202;EGR1..3:-1.15486629101;GATA4:-1.20073089227;T:-1.25353350606;TFCP2:-1.26098035068;VSX1,2:-1.27341818943;MED-1{core}:-1.27904949335;GTF2A1,2:-1.28397216489;SPZ1:-1.34200368241;CRX:-1.35034387066;ZNF238:-1.36643122655;FOX{I1,J2}:-1.36937685083;NHLH1,2:-1.37809574479;TFDP1:-1.37888049482;MAFB:-1.38098995239;PAX8:-1.41466247286;NR1H4:-1.63863089806;GCM1,2:-1.66260760959;HMX1:-1.9341108074;NANOG{mouse}:-2.25309767987;TFAP4:-2.43762009262 | |top_motifs=HIF1A:2.68710315906;PITX1..3:2.13435977508;ZBTB16:2.10102358872;POU1F1:1.76055324289;FOXQ1:1.61013812806;EVI1:1.57734213398;NKX6-1,2:1.43224850076;PDX1:1.36378147159;AHR_ARNT_ARNT2:1.21850732618;IRF1,2:1.21779983721;NKX2-3_NKX2-5:1.15938870595;LHX3,4:1.14928351728;FOXD3:1.14089107767;HNF1A:1.14061549349;FOXP1:1.13555464927;bHLH_family:1.09149752643;PBX1:1.08408359509;XCPE1{core}:1.07817750875;TEF:1.05173686967;ONECUT1,2:1.01854655465;SP1:1.01461089148;PPARG:0.982890525679;ADNP_IRX_SIX_ZHX:0.981820238914;IKZF2:0.927671074033;ATF6:0.923556445756;DBP:0.914111783597;NR6A1:0.905444188013;RBPJ:0.903534852992;FOX{D1,D2}:0.867946507803;CDX1,2,4:0.848707052257;AIRE:0.848671845211;HES1:0.835560769583;BPTF:0.786931951509;EP300:0.765772132557;IRF7:0.756322477673;HBP1_HMGB_SSRP1_UBTF:0.75313099504;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.733495714072;LMO2:0.718474966602;NFKB1_REL_RELA:0.662480199271;STAT1,3:0.658984431024;HNF4A_NR2F1,2:0.611786421636;CDC5L:0.601614307953;EN1,2:0.599351646118;ELK1,4_GABP{A,B1}:0.574001285028;TP53:0.567856527894;FOX{F1,F2,J1}:0.504547248476;NRF1:0.498109210376;HMGA1,2:0.489974723059;STAT5{A,B}:0.48068657009;TOPORS:0.466830800069;HOXA9_MEIS1:0.429173084407;HSF1,2:0.408449251581;RXRA_VDR{dimer}:0.40753918704;UFEwm:0.388381939079;RREB1:0.385810221979;HAND1,2:0.377908651413;EBF1:0.36713624629;MYB:0.356204082018;ZNF384:0.35545836084;STAT2,4,6:0.322882975649;FOXP3:0.307113054204;ZNF423:0.263222822325;NKX2-2,8:0.251922330083;OCT4_SOX2{dimer}:0.213829941286;RXR{A,B,G}:0.187391491823;ZNF143:0.17773786867;SNAI1..3:0.169655193791;ZIC1..3:0.167001040449;ZEB1:0.15918798158;PAX4:0.146615304436;NKX2-1,4:0.122829153272;FOXO1,3,4:0.0994040011963;TLX2:0.0897752591913;FOXL1:0.038660975004;NFE2:0.0352548868968;MYOD1:0.00941751197285;XBP1:0.00474833313891;POU3F1..4:0.00128864392857;TEAD1:-0.000161216065254;ATF2:-0.0172969849601;PAX1,9:-0.0214919288745;ALX1:-0.0368236991869;RFX1:-0.0470315862884;NR3C1:-0.0718767953962;HOX{A6,A7,B6,B7}:-0.0746660359662;E2F1..5:-0.0909812400388;ALX4:-0.0963984697889;FOSL2:-0.0992333116452;ATF4:-0.100969983788;ATF5_CREB3:-0.116127468792;NFY{A,B,C}:-0.124584256771;PAX6:-0.143127691002;FOXM1:-0.150397378953;BACH2:-0.151552763414;CEBPA,B_DDIT3:-0.159555331645;FOS_FOS{B,L1}_JUN{B,D}:-0.160385724402;PRRX1,2:-0.174990633998;PAX2:-0.207947302912;ZFP161:-0.252198848388;CUX2:-0.285138846224;TAL1_TCF{3,4,12}:-0.285241242981;FOXN1:-0.287570017253;NKX3-1:-0.288316444821;GFI1:-0.291837712187;RORA:-0.302455365854;MTF1:-0.313781516344;POU5F1:-0.321478626304;PRDM1:-0.32779752185;NFE2L1:-0.350308559784;GTF2I:-0.36538008877;ESRRA:-0.374472415907;NR5A1,2:-0.383351724174;MEF2{A,B,C,D}:-0.38563546267;SOX5:-0.387843869893;ZBTB6:-0.409467445496;ZNF148:-0.423737994178;ELF1,2,4:-0.424722090518;NKX3-2:-0.426750680033;RFX2..5_RFXANK_RFXAP:-0.431915119477;KLF4:-0.447997365043;ARID5B:-0.45358767182;NFIL3:-0.459349244266;GFI1B:-0.487249829731;NFE2L2:-0.493328988512;POU6F1:-0.49494550274;SREBF1,2:-0.5057598178;CREB1:-0.514940788232;GATA6:-0.524919798909;TBP:-0.529593991613;PATZ1:-0.541736493353;POU2F1..3:-0.545310820978;HLF:-0.546739831458;IKZF1:-0.559928385459;DMAP1_NCOR{1,2}_SMARC:-0.599297947727;NANOG:-0.601237076533;MZF1:-0.612787968446;TFAP2{A,C}:-0.618799944934;REST:-0.62932270278;GZF1:-0.629329791892;HOX{A5,B5}:-0.634897219271;RUNX1..3:-0.648855073184;SMAD1..7,9:-0.66138664329;NFATC1..3:-0.6659581179;MYFfamily:-0.667620722351;MAZ:-0.669826517296;TBX4,5:-0.687417346248;SPI1:-0.701888005173;MTE{core}:-0.712293576567;HOX{A4,D4}:-0.751958649172;MYBL2:-0.752036924589;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.75543945909;ESR1:-0.762972357254;FOXA2:-0.763074687903;SPIB:-0.772566533247;NFIX:-0.773269400263;SOX2:-0.775856539458;ETS1,2:-0.78936865632;GLI1..3:-0.803100648802;TLX1..3_NFIC{dimer}:-0.824263170864;HIC1:-0.82732554917;LEF1_TCF7_TCF7L1,2:-0.831038855709;AR:-0.832522398994;SOX{8,9,10}:-0.833329823812;TGIF1:-0.900729865214;PAX3,7:-0.987188775378;SRF:-1.00254402562;TFAP2B:-1.01613472456;YY1:-1.08017476666;JUN:-1.11982517804;PAX5:-1.12017232417;BREu{core}:-1.12404760328;SOX17:-1.12868413202;EGR1..3:-1.15486629101;GATA4:-1.20073089227;T:-1.25353350606;TFCP2:-1.26098035068;VSX1,2:-1.27341818943;MED-1{core}:-1.27904949335;GTF2A1,2:-1.28397216489;SPZ1:-1.34200368241;CRX:-1.35034387066;ZNF238:-1.36643122655;FOX{I1,J2}:-1.36937685083;NHLH1,2:-1.37809574479;TFDP1:-1.37888049482;MAFB:-1.38098995239;PAX8:-1.41466247286;NR1H4:-1.63863089806;GCM1,2:-1.66260760959;HMX1:-1.9341108074;NANOG{mouse}:-2.25309767987;TFAP4:-2.43762009262 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10471-106I3;search_select_hide=table117:FF:10471-106I3 | |||
}} | }} | ||
Latest revision as of 14:25, 3 June 2020
| Name: | renal cell carcinoma cell line:TUHR10TKB |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11257 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11257
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11257
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.25 |
| 10 | 10 | 0.0763 |
| 100 | 100 | 0.00731 |
| 101 | 101 | 0.132 |
| 102 | 102 | 0.826 |
| 103 | 103 | 0.314 |
| 104 | 104 | 0.622 |
| 105 | 105 | 0.752 |
| 106 | 106 | 0.113 |
| 107 | 107 | 0.364 |
| 108 | 108 | 0.747 |
| 109 | 109 | 0.189 |
| 11 | 11 | 0.969 |
| 110 | 110 | 0.0372 |
| 111 | 111 | 0.153 |
| 112 | 112 | 0.379 |
| 113 | 113 | 0.276 |
| 114 | 114 | 0.684 |
| 115 | 115 | 0.797 |
| 116 | 116 | 0.882 |
| 117 | 117 | 0.0179 |
| 118 | 118 | 0.00138 |
| 119 | 119 | 0.385 |
| 12 | 12 | 0.115 |
| 120 | 120 | 0.655 |
| 121 | 121 | 0.834 |
| 122 | 122 | 0.0631 |
| 123 | 123 | 0.428 |
| 124 | 124 | 0.585 |
| 125 | 125 | 0.452 |
| 126 | 126 | 0.498 |
| 127 | 127 | 0.77 |
| 128 | 128 | 0.0823 |
| 129 | 129 | 0.447 |
| 13 | 13 | 3.63333e-4 |
| 130 | 130 | 0.122 |
| 131 | 131 | 0.762 |
| 132 | 132 | 0.47 |
| 133 | 133 | 0.161 |
| 134 | 134 | 0.192 |
| 135 | 135 | 0.0119 |
| 136 | 136 | 0.712 |
| 137 | 137 | 0.546 |
| 138 | 138 | 0.913 |
| 139 | 139 | 0.76 |
| 14 | 14 | 0.66 |
| 140 | 140 | 0.144 |
| 141 | 141 | 0.896 |
| 142 | 142 | 0.133 |
| 143 | 143 | 0.247 |
| 144 | 144 | 0.804 |
| 145 | 145 | 0.606 |
| 146 | 146 | 0.205 |
| 147 | 147 | 0.418 |
| 148 | 148 | 0.554 |
| 149 | 149 | 0.607 |
| 15 | 15 | 0.328 |
| 150 | 150 | 0.743 |
| 151 | 151 | 0.934 |
| 152 | 152 | 0.71 |
| 153 | 153 | 0.446 |
| 154 | 154 | 0.954 |
| 155 | 155 | 0.469 |
| 156 | 156 | 0.984 |
| 157 | 157 | 0.405 |
| 158 | 158 | 0.39 |
| 159 | 159 | 0.264 |
| 16 | 16 | 0.957 |
| 160 | 160 | 0.0819 |
| 161 | 161 | 0.346 |
| 162 | 162 | 0.528 |
| 163 | 163 | 0.191 |
| 164 | 164 | 0.0139 |
| 165 | 165 | 0.436 |
| 166 | 166 | 0.146 |
| 167 | 167 | 0.381 |
| 168 | 168 | 0.0976 |
| 169 | 169 | 0.379 |
| 17 | 17 | 0.528 |
| 18 | 18 | 0.0866 |
| 19 | 19 | 0.86 |
| 2 | 2 | 0.441 |
| 20 | 20 | 0.00777 |
| 21 | 21 | 0.347 |
| 22 | 22 | 0.961 |
| 23 | 23 | 0.302 |
| 24 | 24 | 0.809 |
| 25 | 25 | 0.633 |
| 26 | 26 | 0.0853 |
| 27 | 27 | 0.23 |
| 28 | 28 | 0.868 |
| 29 | 29 | 0.00781 |
| 3 | 3 | 0.0607 |
| 30 | 30 | 0.38 |
| 31 | 31 | 0.479 |
| 32 | 32 | 0.0887 |
| 33 | 33 | 0.348 |
| 34 | 34 | 0.203 |
| 35 | 35 | 0.439 |
| 36 | 36 | 0.0565 |
| 37 | 37 | 0.34 |
| 38 | 38 | 0.68 |
| 39 | 39 | 0.703 |
| 4 | 4 | 0.791 |
| 40 | 40 | 0.0349 |
| 41 | 41 | 0.0604 |
| 42 | 42 | 0.607 |
| 43 | 43 | 0.611 |
| 44 | 44 | 0.191 |
| 45 | 45 | 0.535 |
| 46 | 46 | 0.904 |
| 47 | 47 | 0.752 |
| 48 | 48 | 0.755 |
| 49 | 49 | 0.58 |
| 5 | 5 | 0.749 |
| 50 | 50 | 0.91 |
| 51 | 51 | 0.721 |
| 52 | 52 | 0.245 |
| 53 | 53 | 0.846 |
| 54 | 54 | 0.287 |
| 55 | 55 | 0.535 |
| 56 | 56 | 0.556 |
| 57 | 57 | 0.216 |
| 58 | 58 | 0.264 |
| 59 | 59 | 0.75 |
| 6 | 6 | 0.164 |
| 60 | 60 | 0.756 |
| 61 | 61 | 0.141 |
| 62 | 62 | 0.945 |
| 63 | 63 | 0.971 |
| 64 | 64 | 0.945 |
| 65 | 65 | 0.878 |
| 66 | 66 | 0.974 |
| 67 | 67 | 0.491 |
| 68 | 68 | 0.773 |
| 69 | 69 | 0.13 |
| 7 | 7 | 0.696 |
| 70 | 70 | 0.268 |
| 71 | 71 | 0.00489 |
| 72 | 72 | 0.999 |
| 73 | 73 | 0.541 |
| 74 | 74 | 0.272 |
| 75 | 75 | 0.0694 |
| 76 | 76 | 0.0159 |
| 77 | 77 | 0.468 |
| 78 | 78 | 0.0788 |
| 79 | 79 | 0.759 |
| 8 | 8 | 0.499 |
| 80 | 80 | 0.00321 |
| 81 | 81 | 0.821 |
| 82 | 82 | 0.871 |
| 83 | 83 | 0.996 |
| 84 | 84 | 0.725 |
| 85 | 85 | 0.794 |
| 86 | 86 | 0.776 |
| 87 | 87 | 0.258 |
| 88 | 88 | 0.636 |
| 89 | 89 | 0.366 |
| 9 | 9 | 0.0325 |
| 90 | 90 | 0.349 |
| 91 | 91 | 0.973 |
| 92 | 92 | 0.805 |
| 93 | 93 | 0.989 |
| 94 | 94 | 0.982 |
| 95 | 95 | 0.173 |
| 96 | 96 | 0.558 |
| 97 | 97 | 0.723 |
| 98 | 98 | 0.85 |
| 99 | 99 | 0.587 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11257
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0103732 TUHR-10TKB cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
1000497 (kidney cell)
0002518 (kidney epithelial cell)
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
7 (disease of anatomical entity)
305 (carcinoma)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002113 (kidney)
0002100 (trunk)
0000062 (organ)
0000475 (organism subdivision)
0006554 (urinary system structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003103 (compound organ)
0009569 (subdivision of trunk)
0000489 (cavitated compound organ)
0005177 (trunk region element)
0005172 (abdomen element)
0005173 (abdominal segment element)
0011143 (upper urinary tract)
0001008 (renal system)
0002417 (abdominal segment of trunk)
0000916 (abdomen)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0100067 (kidney cell line sample)
0101120 (epithelial cell line sample)
0103192 (renal cancer cell line sample)
0100383 (renal cell carcinoma cell line sample)
0103732 (TUHR-10TKB cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0003104 (mesenchyme)
UBERON:0003918 (kidney mesenchyme)
UBERON:0007687 (kidney field)
