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{{f5samples
{{f5samples
|id=FF:10474-106I6
|DRA_sample_Accession=CAGE@SAMD00004771
|name=myeloma cell line:PCM6
|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00004771
|sample_id=10474
|HumanCAGEScanFiles=NCig10067;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/myeloma%2520cell%2520line%253aPCM6%252c%2520tech_rep1.NCig10067.10474-106I6.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/myeloma%2520cell%2520line%253aPCM6%252c%2520tech_rep1.NCig10067.10474-106I6.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/myeloma%2520cell%2520line%253aPCM6%252c%2520tech_rep1.NCig10067.10474-106I6.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/myeloma%2520cell%2520line%253aPCM6%252c%2520tech_rep1.NCig10067.10474-106I6.hg19.GCTATA.pairs.bed.gz!NCig10131;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/myeloma%2520cell%2520line%253aPCM6%252c%2520tech_rep2.NCig10131.10474-106I6.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/myeloma%2520cell%2520line%253aPCM6%252c%2520tech_rep2.NCig10131.10474-106I6.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/myeloma%2520cell%2520line%253aPCM6%252c%2520tech_rep2.NCig10131.10474-106I6.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/myeloma%2520cell%2520line%253aPCM6%252c%2520tech_rep2.NCig10131.10474-106I6.hg19.GCTATA.pairs.bed.gz
|rna_tube_id=106I6
|accession_numbers=CAGE;DRX007957;DRR008829;DRZ000254;DRZ001639;DRZ011604;DRZ012989
|rna_box=106
|accession_numbers_RNASeq=RNA-Seq;DRX057125;DRR062884;DRZ007960
|rna_position=I6
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004765,UBERON:0010317,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405
|sample_cell_lot=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0002320,CL:0002371,CL:0000542,CL:0000219,CL:0000945,CL:0000738,CL:0002087,CL:0002242,CL:0000255,CL:0002092
|sample_cell_catalog=RCB1460
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:2531,DOID:14566,DOID:0060083,DOID:4960,DOID:0070004
|sample_company=RIKEN Bioresource centre
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100583,FF:0100898,FF:0100899
|rna_lot_number=
|comment=
|rna_catalog_number=
|created_by=
|sample_species=Human (Homo sapiens)
|creation_date=
|sample_strain=
|data_phase=2
|sample_dev_stage=
|datafreeze_phase=2
|sample_tissue=blood
|def=
|sample_donor(cell lot)=
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|sample_sex=female
|ffid_belonging_in_development=CL:0000134,CL:0000051,UBERON:0002532,UBERON:0006603,UBERON:0010316
|sample_age=60
|sample_ethnicity=unknown
|rna_rin=
|rna_od260/230=0.99
|rna_od260/280=2.1
|sample_cell_type=b cell
|sample_cell_line=PCM6
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_experimental_condition=
|sample_disease=myeloma
|rna_sample_type=total RNA
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_weight_ug=17.08225
|rna_concentration=0.68329
|sample_note=
|profile_hcage=CNhs11258,LSID757,release008,COMPLETED
|profile_cagescan=NCig10067,,,
|profile_srnaseq=,,,
|profile_rnaseq=,,,
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000034,CL:0000037,CL:0000048,CL:0000051,CL:0000063,CL:0000134,CL:0000144,CL:0000219,CL:0000255,CL:0000542,CL:0000548,CL:0000566,CL:0000723,CL:0000738,CL:0000826,CL:0000837,CL:0000838,CL:0000945,CL:0000988,CL:0002031,CL:0002032,CL:0002087,CL:0002092,CL:0002320,CL:0002371
|ancestors_in_anatomy_facet=UBERON:0000061,UBERON:0000062,UBERON:0000465,UBERON:0000467,UBERON:0000468,UBERON:0000479,UBERON:0000480,UBERON:0000922,UBERON:0000923,UBERON:0000926,UBERON:0001062,UBERON:0001434,UBERON:0001474,UBERON:0002050,UBERON:0002193,UBERON:0002204,UBERON:0002371,UBERON:0002384,UBERON:0002390,UBERON:0002405,UBERON:0002532,UBERON:0004120,UBERON:0004765,UBERON:0005423
|ancestors_in_disease_facet=DOID:0050686,DOID:0060083,DOID:0070004,DOID:14566,DOID:162,DOID:2531,DOID:4,DOID:4960
|sample_description=
|fonse_cell_line=FF:0100583
|fonse_cell_line=FF:0100583
|fonse_cell_line_closure=FF:0100583
|fonse_cell_line_closure=FF:0100583
Line 66: Line 43:
|fonse_treatment=
|fonse_treatment=
|fonse_treatment_closure=
|fonse_treatment_closure=
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|rna_box=106
|rna_catalog_number=
|rna_concentration=0.68329
|rna_extraction_protocol=OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0
|rna_lot_number=
|rna_od260/230=0.99
|rna_od260/280=2.1
|rna_position=I6
|rna_rin=
|rna_sample_type=total RNA
|rna_tube_id=106I6
|rna_weight_ug=17.08225
|rnaseq_library_id=RDhi10068
|sample_age=60
|sample_category=cell lines
|sample_cell_catalog=RCB1460
|sample_cell_line=PCM6
|sample_cell_lot=
|sample_cell_type=b cell
|sample_collaboration=Yukio Nakamura (RIKEN BRC)
|sample_company=RIKEN Bioresource centre
|sample_description=
|sample_dev_stage=
|sample_disease=myeloma
|sample_donor(cell lot)=
|sample_ethnicity=unknown
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.27873053070293e-238!GO:0043227;membrane-bound organelle;4.68914528331843e-210!GO:0043231;intracellular membrane-bound organelle;1.16872282958797e-209!GO:0043226;organelle;9.75567290818342e-196!GO:0043229;intracellular organelle;3.21020635890997e-195!GO:0005737;cytoplasm;2.8014166337506e-173!GO:0044422;organelle part;6.26568257784318e-145!GO:0044446;intracellular organelle part;2.17007476521027e-142!GO:0044444;cytoplasmic part;9.66801589266384e-137!GO:0032991;macromolecular complex;2.78118875044211e-104!GO:0044237;cellular metabolic process;2.1413763284223e-95!GO:0030529;ribonucleoprotein complex;1.58723380560614e-90!GO:0044238;primary metabolic process;1.05452269692804e-89!GO:0005634;nucleus;3.90425153143654e-81!GO:0043170;macromolecule metabolic process;1.35710827252417e-79!GO:0043233;organelle lumen;3.69947019356926e-79!GO:0031974;membrane-enclosed lumen;3.69947019356926e-79!GO:0005739;mitochondrion;7.94783061326023e-79!GO:0003723;RNA binding;1.45234649952729e-77!GO:0044428;nuclear part;1.70118033377632e-77!GO:0006412;translation;2.98246319604907e-58!GO:0031090;organelle membrane;4.97326538541148e-58!GO:0006396;RNA processing;2.92633258025212e-56!GO:0005515;protein binding;1.20848488441734e-52!GO:0044429;mitochondrial part;1.74464380014854e-52!GO:0005840;ribosome;1.87577491816108e-52!GO:0043234;protein complex;6.23514661100312e-52!GO:0043283;biopolymer metabolic process;9.21495255989745e-49!GO:0009058;biosynthetic process;1.94763195694868e-48!GO:0031981;nuclear lumen;6.67852515361509e-48!GO:0010467;gene expression;5.53645510548724e-47!GO:0044249;cellular biosynthetic process;8.65323322237468e-47!GO:0031967;organelle envelope;2.62508395028349e-45!GO:0003735;structural constituent of ribosome;3.2694837368563e-45!GO:0019538;protein metabolic process;5.48038422613309e-45!GO:0031975;envelope;5.95134340440113e-45!GO:0009059;macromolecule biosynthetic process;1.05258178202603e-44!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.02526758370603e-43!GO:0015031;protein transport;1.70003136707292e-43!GO:0033036;macromolecule localization;1.97669991762951e-43!GO:0016071;mRNA metabolic process;5.06249305776446e-42!GO:0044267;cellular protein metabolic process;1.83799817561484e-41!GO:0044260;cellular macromolecule metabolic process;2.57406910353508e-41!GO:0045184;establishment of protein localization;4.00697998520409e-41!GO:0008104;protein localization;1.8867191044033e-39!GO:0033279;ribosomal subunit;2.64490135879319e-39!GO:0046907;intracellular transport;9.81427464069005e-37!GO:0006397;mRNA processing;1.51746572670591e-36!GO:0008380;RNA splicing;1.97417394329027e-36!GO:0005829;cytosol;2.59100796777979e-36!GO:0005740;mitochondrial envelope;4.20968507080502e-33!GO:0006886;intracellular protein transport;3.00882042191152e-32!GO:0016043;cellular component organization and biogenesis;3.04150616384313e-32!GO:0019866;organelle inner membrane;3.08605385659475e-32!GO:0022613;ribonucleoprotein complex biogenesis and assembly;3.88971988652083e-32!GO:0031966;mitochondrial membrane;2.77153277764994e-31!GO:0003676;nucleic acid binding;3.10287949480361e-31!GO:0005743;mitochondrial inner membrane;8.544193760955e-30!GO:0005654;nucleoplasm;3.6914149047068e-29!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.69841332291564e-27!GO:0005681;spliceosome;7.72780423278876e-27!GO:0006259;DNA metabolic process;1.28403330992258e-26!GO:0065003;macromolecular complex assembly;2.70763398757278e-26!GO:0051649;establishment of cellular localization;4.01906385288113e-26!GO:0006996;organelle organization and biogenesis;4.28478461902868e-26!GO:0051641;cellular localization;1.97355101191156e-25!GO:0012505;endomembrane system;3.29046841935683e-24!GO:0016874;ligase activity;1.51856163375048e-23!GO:0006119;oxidative phosphorylation;1.97946922805568e-23!GO:0031980;mitochondrial lumen;3.51819098355157e-23!GO:0005759;mitochondrial matrix;3.51819098355157e-23!GO:0044455;mitochondrial membrane part;5.72828384841034e-23!GO:0044445;cytosolic part;5.86690024030888e-23!GO:0044451;nucleoplasm part;2.36193817405537e-22!GO:0006512;ubiquitin cycle;3.04392888596821e-22!GO:0022607;cellular component assembly;5.9446902118443e-22!GO:0016070;RNA metabolic process;1.50098755193076e-21!GO:0005783;endoplasmic reticulum;1.93644948133131e-20!GO:0015934;large ribosomal subunit;3.10060005906116e-20!GO:0005730;nucleolus;3.79003240161673e-20!GO:0043228;non-membrane-bound organelle;4.6126685933019e-20!GO:0043232;intracellular non-membrane-bound organelle;4.6126685933019e-20!GO:0015935;small ribosomal subunit;5.57660359028268e-20!GO:0000166;nucleotide binding;6.19284405092086e-20!GO:0044432;endoplasmic reticulum part;1.98342848543034e-19!GO:0006974;response to DNA damage stimulus;5.44207671861541e-19!GO:0044265;cellular macromolecule catabolic process;2.5940287645088e-18!GO:0051186;cofactor metabolic process;4.98096720992846e-18!GO:0007049;cell cycle;6.95657287025649e-18!GO:0005746;mitochondrial respiratory chain;8.77051012425324e-18!GO:0006457;protein folding;1.29548674265976e-17!GO:0022618;protein-RNA complex assembly;1.29548674265976e-17!GO:0008134;transcription factor binding;1.83367904440621e-17!GO:0048770;pigment granule;4.99620273052416e-17!GO:0042470;melanosome;4.99620273052416e-17!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.76610625844383e-17!GO:0016462;pyrophosphatase activity;6.26009898519223e-17!GO:0016817;hydrolase activity, acting on acid anhydrides;7.59065077459774e-17!GO:0005761;mitochondrial ribosome;1.27637183404213e-16!GO:0000313;organellar ribosome;1.27637183404213e-16!GO:0044248;cellular catabolic process;1.35225786001631e-16!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.2490932764473e-16!GO:0005789;endoplasmic reticulum membrane;2.78407371663608e-16!GO:0017111;nucleoside-triphosphatase activity;3.64214031232339e-16!GO:0000502;proteasome complex (sensu Eukaryota);4.01977658055146e-16!GO:0008135;translation factor activity, nucleic acid binding;7.25389326857683e-16!GO:0051603;proteolysis involved in cellular protein catabolic process;8.12795435160327e-16!GO:0043285;biopolymer catabolic process;8.84623327398923e-16!GO:0006281;DNA repair;9.33648129628337e-16!GO:0006605;protein targeting;1.03580250971758e-15!GO:0019941;modification-dependent protein catabolic process;1.12923035625776e-15!GO:0043632;modification-dependent macromolecule catabolic process;1.12923035625776e-15!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.54579357739773e-15!GO:0044257;cellular protein catabolic process;2.26344473860841e-15!GO:0006511;ubiquitin-dependent protein catabolic process;2.86143294063443e-15!GO:0050136;NADH dehydrogenase (quinone) activity;4.14364813238402e-15!GO:0003954;NADH dehydrogenase activity;4.14364813238402e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.14364813238402e-15!GO:0042254;ribosome biogenesis and assembly;5.14267908159457e-15!GO:0022402;cell cycle process;5.80399620472969e-15!GO:0006915;apoptosis;7.38490231480275e-15!GO:0012501;programmed cell death;7.96679924298307e-15!GO:0009057;macromolecule catabolic process;1.96558554391473e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.00338035976208e-14!GO:0006732;coenzyme metabolic process;3.45348353913845e-14!GO:0032553;ribonucleotide binding;6.78217816803089e-14!GO:0032555;purine ribonucleotide binding;6.78217816803089e-14!GO:0008219;cell death;7.20625134947635e-14!GO:0016265;death;7.20625134947635e-14!GO:0017076;purine nucleotide binding;7.88761884004633e-14!GO:0043412;biopolymer modification;1.12614900587335e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.14751541909849e-13!GO:0042775;organelle ATP synthesis coupled electron transport;1.70637676594394e-13!GO:0042773;ATP synthesis coupled electron transport;1.70637676594394e-13!GO:0006399;tRNA metabolic process;3.49223572815251e-13!GO:0030964;NADH dehydrogenase complex (quinone);3.49223572815251e-13!GO:0045271;respiratory chain complex I;3.49223572815251e-13!GO:0005747;mitochondrial respiratory chain complex I;3.49223572815251e-13!GO:0005635;nuclear envelope;3.53684960066773e-13!GO:0005694;chromosome;3.72881440136445e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;3.95718243797169e-13!GO:0000375;RNA splicing, via transesterification reactions;3.95718243797169e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.95718243797169e-13!GO:0005794;Golgi apparatus;4.02100289633903e-13!GO:0009719;response to endogenous stimulus;4.73079793833012e-13!GO:0048193;Golgi vesicle transport;4.87697616399449e-13!GO:0000278;mitotic cell cycle;1.06199755627464e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.08841195659987e-12!GO:0016887;ATPase activity;1.60496981643937e-12!GO:0005524;ATP binding;1.70181719555732e-12!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;2.34410115888203e-12!GO:0051082;unfolded protein binding;2.39355373864644e-12!GO:0042623;ATPase activity, coupled;2.9045590755064e-12!GO:0032559;adenyl ribonucleotide binding;4.08017059091279e-12!GO:0030554;adenyl nucleotide binding;6.61244183581231e-12!GO:0003743;translation initiation factor activity;6.63374150585231e-12!GO:0006464;protein modification process;8.14011906580623e-12!GO:0031965;nuclear membrane;9.06074059941008e-12!GO:0016604;nuclear body;1.17337593897474e-11!GO:0044427;chromosomal part;1.48580119676418e-11!GO:0003712;transcription cofactor activity;1.5345671458843e-11!GO:0051276;chromosome organization and biogenesis;1.74157654075442e-11!GO:0030163;protein catabolic process;2.21435376150154e-11!GO:0000087;M phase of mitotic cell cycle;2.56878114790193e-11!GO:0006913;nucleocytoplasmic transport;3.28791117897463e-11!GO:0007067;mitosis;5.41345070546691e-11!GO:0051169;nuclear transport;5.69365631925103e-11!GO:0044453;nuclear membrane part;6.00483265665543e-11!GO:0016879;ligase activity, forming carbon-nitrogen bonds;6.63199410101718e-11!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;6.67703841083726e-11!GO:0022403;cell cycle phase;9.94378703335306e-11!GO:0006413;translational initiation;1.05282204667908e-10!GO:0009259;ribonucleotide metabolic process;1.29717077833235e-10!GO:0006163;purine nucleotide metabolic process;1.38656734537687e-10!GO:0007005;mitochondrion organization and biogenesis;1.78032535785135e-10!GO:0006446;regulation of translational initiation;2.10619189122696e-10!GO:0051188;cofactor biosynthetic process;2.38981712253936e-10!GO:0006164;purine nucleotide biosynthetic process;3.74724328221888e-10!GO:0006364;rRNA processing;4.35635674191278e-10!GO:0008565;protein transporter activity;4.40454588020035e-10!GO:0043067;regulation of programmed cell death;4.83441409753843e-10!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;5.30435185546888e-10!GO:0016072;rRNA metabolic process;5.32668880115201e-10!GO:0009150;purine ribonucleotide metabolic process;5.53621212256991e-10!GO:0042981;regulation of apoptosis;5.7755888953817e-10!GO:0005768;endosome;5.85518899586501e-10!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;7.02213756638152e-10!GO:0065002;intracellular protein transport across a membrane;1.2197727644028e-09!GO:0008639;small protein conjugating enzyme activity;1.25798595144791e-09!GO:0006325;establishment and/or maintenance of chromatin architecture;1.26413365551015e-09!GO:0043687;post-translational protein modification;1.35399927148951e-09!GO:0009260;ribonucleotide biosynthetic process;1.42037096269871e-09!GO:0009152;purine ribonucleotide biosynthetic process;1.43951118374864e-09!GO:0005793;ER-Golgi intermediate compartment;1.46522947879102e-09!GO:0019829;cation-transporting ATPase activity;2.32931102472813e-09!GO:0019787;small conjugating protein ligase activity;2.33899253809417e-09!GO:0000323;lytic vacuole;2.33899253809417e-09!GO:0005764;lysosome;2.33899253809417e-09!GO:0015986;ATP synthesis coupled proton transport;2.42435633205889e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.42435633205889e-09!GO:0005773;vacuole;2.48324422105873e-09!GO:0016192;vesicle-mediated transport;2.51817783874037e-09!GO:0006403;RNA localization;2.66637641867803e-09!GO:0015078;hydrogen ion transmembrane transporter activity;2.9756730618131e-09!GO:0050657;nucleic acid transport;3.22332808525161e-09!GO:0051236;establishment of RNA localization;3.22332808525161e-09!GO:0050658;RNA transport;3.22332808525161e-09!GO:0004842;ubiquitin-protein ligase activity;3.3444059850815e-09!GO:0009055;electron carrier activity;3.46040499914791e-09!GO:0016607;nuclear speck;3.64634358751286e-09!GO:0006323;DNA packaging;3.95933502481792e-09!GO:0004386;helicase activity;4.01979576798844e-09!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.2654271040114e-09!GO:0004812;aminoacyl-tRNA ligase activity;4.2654271040114e-09!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.2654271040114e-09!GO:0000279;M phase;6.67692755240435e-09!GO:0009056;catabolic process;7.05492982956593e-09!GO:0043038;amino acid activation;8.01402653174991e-09!GO:0006418;tRNA aminoacylation for protein translation;8.01402653174991e-09!GO:0043039;tRNA aminoacylation;8.01402653174991e-09!GO:0000074;regulation of progression through cell cycle;1.05180041339934e-08!GO:0051726;regulation of cell cycle;1.16612758841759e-08!GO:0005643;nuclear pore;1.53269375448032e-08!GO:0006752;group transfer coenzyme metabolic process;1.53269375448032e-08!GO:0016881;acid-amino acid ligase activity;1.69652297324902e-08!GO:0016787;hydrolase activity;1.85278977344173e-08!GO:0006754;ATP biosynthetic process;2.14498455237727e-08!GO:0006753;nucleoside phosphate metabolic process;2.14498455237727e-08!GO:0006260;DNA replication;3.21973153715268e-08!GO:0046034;ATP metabolic process;3.37681090415969e-08!GO:0009108;coenzyme biosynthetic process;3.42606672238746e-08!GO:0017038;protein import;3.63175124822557e-08!GO:0043566;structure-specific DNA binding;4.12370146085761e-08!GO:0051246;regulation of protein metabolic process;4.36688039475922e-08!GO:0016779;nucleotidyltransferase activity;4.75753140296506e-08!GO:0008026;ATP-dependent helicase activity;5.05436259515543e-08!GO:0051301;cell division;5.05436259515543e-08!GO:0030120;vesicle coat;5.09008062444024e-08!GO:0030662;coated vesicle membrane;5.09008062444024e-08!GO:0009141;nucleoside triphosphate metabolic process;5.7982888518088e-08!GO:0009199;ribonucleoside triphosphate metabolic process;6.27810613127551e-08!GO:0006888;ER to Golgi vesicle-mediated transport;7.32856188596579e-08!GO:0009142;nucleoside triphosphate biosynthetic process;7.42240982077094e-08!GO:0009201;ribonucleoside triphosphate biosynthetic process;7.42240982077094e-08!GO:0006366;transcription from RNA polymerase II promoter;8.21576229094591e-08!GO:0009205;purine ribonucleoside triphosphate metabolic process;9.61188133762186e-08!GO:0009144;purine nucleoside triphosphate metabolic process;9.61188133762186e-08!GO:0015077;monovalent inorganic cation transmembrane transporter activity;1.08661830414051e-07!GO:0016469;proton-transporting two-sector ATPase complex;1.08661830414051e-07!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.14108385609615e-07!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.14108385609615e-07!GO:0003697;single-stranded DNA binding;1.34223530962524e-07!GO:0016568;chromatin modification;1.36755336130053e-07!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.45598337535863e-07!GO:0005839;proteasome core complex (sensu Eukaryota);1.46602679503314e-07!GO:0009060;aerobic respiration;1.49477427802101e-07!GO:0051028;mRNA transport;1.67956230667885e-07!GO:0046930;pore complex;1.75939425681849e-07!GO:0048475;coated membrane;1.80937000005443e-07!GO:0030117;membrane coat;1.80937000005443e-07!GO:0032446;protein modification by small protein conjugation;2.22250820902156e-07!GO:0030532;small nuclear ribonucleoprotein complex;3.90947401539354e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;5.36262277967885e-07!GO:0016567;protein ubiquitination;5.53765471123941e-07!GO:0065004;protein-DNA complex assembly;5.86273604718759e-07!GO:0005770;late endosome;6.2225775047847e-07!GO:0045333;cellular respiration;6.5724035126588e-07!GO:0043069;negative regulation of programmed cell death;7.09099508771894e-07!GO:0006333;chromatin assembly or disassembly;7.87867920529699e-07!GO:0044440;endosomal part;7.88222148649121e-07!GO:0010008;endosome membrane;7.88222148649121e-07!GO:0051187;cofactor catabolic process;8.64856800678399e-07!GO:0043066;negative regulation of apoptosis;8.71614190339333e-07!GO:0045259;proton-transporting ATP synthase complex;1.00341180880732e-06!GO:0000785;chromatin;1.08316624127587e-06!GO:0004298;threonine endopeptidase activity;1.11110736415462e-06!GO:0006461;protein complex assembly;1.13600352468629e-06!GO:0009109;coenzyme catabolic process;1.66891594738095e-06!GO:0006099;tricarboxylic acid cycle;1.68786804009853e-06!GO:0046356;acetyl-CoA catabolic process;1.68786804009853e-06!GO:0000245;spliceosome assembly;2.35674251828393e-06!GO:0044431;Golgi apparatus part;2.8230507665572e-06!GO:0006613;cotranslational protein targeting to membrane;2.83945501020815e-06!GO:0009117;nucleotide metabolic process;2.86073507058261e-06!GO:0016491;oxidoreductase activity;3.07991314990278e-06!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;3.60917046513249e-06!GO:0015399;primary active transmembrane transporter activity;3.60917046513249e-06!GO:0006084;acetyl-CoA metabolic process;3.64693455963948e-06!GO:0006091;generation of precursor metabolites and energy;4.2455434764205e-06!GO:0006916;anti-apoptosis;4.66919647862287e-06!GO:0000151;ubiquitin ligase complex;5.86880625236353e-06!GO:0016740;transferase activity;7.29397064928814e-06!GO:0050794;regulation of cellular process;9.59016510277723e-06!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;9.87951971165261e-06!GO:0005798;Golgi-associated vesicle;1.03425356722084e-05!GO:0003713;transcription coactivator activity;1.06275758728402e-05!GO:0004518;nuclease activity;1.06332898835059e-05!GO:0006082;organic acid metabolic process;1.18876485856237e-05!GO:0019752;carboxylic acid metabolic process;1.25114004919654e-05!GO:0008033;tRNA processing;1.26797330347373e-05!GO:0016564;transcription repressor activity;1.33919611658802e-05!GO:0006839;mitochondrial transport;1.37984515336619e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;1.5681335500407e-05!GO:0006401;RNA catabolic process;1.59158601602653e-05!GO:0016563;transcription activator activity;1.68718904851003e-05!GO:0005762;mitochondrial large ribosomal subunit;1.7542316569476e-05!GO:0000315;organellar large ribosomal subunit;1.7542316569476e-05!GO:0019899;enzyme binding;1.93481589963526e-05!GO:0003899;DNA-directed RNA polymerase activity;1.94648824315283e-05!GO:0000314;organellar small ribosomal subunit;2.11806645780623e-05!GO:0005763;mitochondrial small ribosomal subunit;2.11806645780623e-05!GO:0045454;cell redox homeostasis;2.1408916813689e-05!GO:0003714;transcription corepressor activity;2.26863459706767e-05!GO:0051170;nuclear import;2.27611970784473e-05!GO:0051168;nuclear export;2.28796532182094e-05!GO:0008654;phospholipid biosynthetic process;2.35972388288103e-05!GO:0003724;RNA helicase activity;2.35972388288103e-05!GO:0065009;regulation of a molecular function;2.52652977633035e-05!GO:0006793;phosphorus metabolic process;2.55838064015186e-05!GO:0006796;phosphate metabolic process;2.55838064015186e-05!GO:0006417;regulation of translation;2.60650431135362e-05!GO:0006612;protein targeting to membrane;2.95409558472714e-05!GO:0006606;protein import into nucleus;3.40868924674722e-05!GO:0000139;Golgi membrane;3.74562459902105e-05!GO:0046483;heterocycle metabolic process;3.79899748114626e-05!GO:0015992;proton transport;4.61572368201736e-05!GO:0005813;centrosome;4.74833852744331e-05!GO:0006818;hydrogen transport;5.41342294906312e-05!GO:0008632;apoptotic program;6.97958574533825e-05!GO:0005774;vacuolar membrane;7.25611285274581e-05!GO:0043021;ribonucleoprotein binding;7.31196902995477e-05!GO:0019222;regulation of metabolic process;8.47683510209983e-05!GO:0048471;perinuclear region of cytoplasm;9.96883312379362e-05!GO:0043492;ATPase activity, coupled to movement of substances;0.000100944403670826!GO:0006520;amino acid metabolic process;0.000101282972441401!GO:0016310;phosphorylation;0.000110721943464526!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.000112018134863964!GO:0048523;negative regulation of cellular process;0.000114607427282093!GO:0005815;microtubule organizing center;0.000120604075298672!GO:0031982;vesicle;0.000120604075298672!GO:0033116;ER-Golgi intermediate compartment membrane;0.000126660843324439!GO:0006891;intra-Golgi vesicle-mediated transport;0.000130023422377688!GO:0016363;nuclear matrix;0.000132402712230898!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;0.000133320874484319!GO:0005667;transcription factor complex;0.00014722731296959!GO:0007249;I-kappaB kinase/NF-kappaB cascade;0.000149084713254093!GO:0031497;chromatin assembly;0.000152502511601159!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.000156299765417401!GO:0006626;protein targeting to mitochondrion;0.000161311615292003!GO:0005765;lysosomal membrane;0.000161827240170799!GO:0045786;negative regulation of progression through cell cycle;0.000168254598932873!GO:0000775;chromosome, pericentric region;0.000171002262160619!GO:0019867;outer membrane;0.000171249228504657!GO:0016741;transferase activity, transferring one-carbon groups;0.000185098376999293!GO:0007006;mitochondrial membrane organization and biogenesis;0.000186036466070176!GO:0009615;response to virus;0.000192622822312707!GO:0031326;regulation of cellular biosynthetic process;0.000193827500940999!GO:0006334;nucleosome assembly;0.00019588639236157!GO:0006402;mRNA catabolic process;0.00019588639236157!GO:0044437;vacuolar part;0.00020522676410507!GO:0005885;Arp2/3 protein complex;0.000205879679454818!GO:0031988;membrane-bound vesicle;0.000227395365462171!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;0.000233676592243882!GO:0031968;organelle outer membrane;0.000234111281573101!GO:0030663;COPI coated vesicle membrane;0.000243659147487868!GO:0030126;COPI vesicle coat;0.000243659147487868!GO:0043681;protein import into mitochondrion;0.000261261377826565!GO:0000049;tRNA binding;0.000265378324326082!GO:0008168;methyltransferase activity;0.000269294649580575!GO:0008652;amino acid biosynthetic process;0.000272542515104261!GO:0022890;inorganic cation transmembrane transporter activity;0.000281863985127077!GO:0006414;translational elongation;0.000290988212109368!GO:0003690;double-stranded DNA binding;0.000298462206390041!GO:0016853;isomerase activity;0.000298462206390041!GO:0000075;cell cycle checkpoint;0.000306398801606252!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000316514817540021!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000317713896195575!GO:0031410;cytoplasmic vesicle;0.000347248097239345!GO:0006302;double-strand break repair;0.0003495528295183!GO:0044452;nucleolar part;0.000381023338624605!GO:0051325;interphase;0.000382260688989618!GO:0051329;interphase of mitotic cell cycle;0.000386337118374283!GO:0043623;cellular protein complex assembly;0.000407772608274625!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000424134462670681!GO:0003729;mRNA binding;0.000426149175466442!GO:0005741;mitochondrial outer membrane;0.000490412150906264!GO:0008186;RNA-dependent ATPase activity;0.000499450185305093!GO:0009165;nucleotide biosynthetic process;0.000520932642660641!GO:0030176;integral to endoplasmic reticulum membrane;0.000535153318463351!GO:0031902;late endosome membrane;0.000535381992091904!GO:0030867;rough endoplasmic reticulum membrane;0.000546680369234125!GO:0042802;identical protein binding;0.00055327091856547!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000578357111681568!GO:0005852;eukaryotic translation initiation factor 3 complex;0.000611949792278163!GO:0016023;cytoplasmic membrane-bound vesicle;0.000621872583249878!GO:0006261;DNA-dependent DNA replication;0.000621872583249878!GO:0007243;protein kinase cascade;0.000680013313940043!GO:0046474;glycerophospholipid biosynthetic process;0.00070268600694173!GO:0008637;apoptotic mitochondrial changes;0.000724956464987316!GO:0030880;RNA polymerase complex;0.000726024085214857!GO:0005788;endoplasmic reticulum lumen;0.000747019558221652!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000779836036372423!GO:0005525;GTP binding;0.000811723329438237!GO:0051789;response to protein stimulus;0.000811723329438237!GO:0006986;response to unfolded protein;0.000811723329438237!GO:0048500;signal recognition particle;0.000829009821651767!GO:0030384;phosphoinositide metabolic process;0.00086128155057645!GO:0051920;peroxiredoxin activity;0.000886157901572537!GO:0016251;general RNA polymerase II transcription factor activity;0.000892228691087073!GO:0006352;transcription initiation;0.000909220500228378!GO:0005048;signal sequence binding;0.000913367159747705!GO:0015630;microtubule cytoskeleton;0.000954506340759737!GO:0009889;regulation of biosynthetic process;0.000964370588566445!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00100009465790114!GO:0015002;heme-copper terminal oxidase activity;0.00100009465790114!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00100009465790114!GO:0004129;cytochrome-c oxidase activity;0.00100009465790114!GO:0006383;transcription from RNA polymerase III promoter;0.00104922309425056!GO:0030137;COPI-coated vesicle;0.00104922309425056!GO:0007051;spindle organization and biogenesis;0.00104922309425056!GO:0031324;negative regulation of cellular metabolic process;0.00108785776047382!GO:0048519;negative regulation of biological process;0.00108785776047382!GO:0030133;transport vesicle;0.00109885872169775!GO:0031323;regulation of cellular metabolic process;0.00113907234468864!GO:0005819;spindle;0.00114342755026071!GO:0043068;positive regulation of programmed cell death;0.00114342755026071!GO:0030658;transport vesicle membrane;0.0011447326078337!GO:0031072;heat shock protein binding;0.0011447326078337!GO:0050790;regulation of catalytic activity;0.00118950353178008!GO:0004527;exonuclease activity;0.00126545594754387!GO:0007050;cell cycle arrest;0.00132604114521629!GO:0000096;sulfur amino acid metabolic process;0.00132999174474061!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00133987593861203!GO:0004004;ATP-dependent RNA helicase activity;0.0013862247027018!GO:0043065;positive regulation of apoptosis;0.00146604707840481!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00153762129456736!GO:0000428;DNA-directed RNA polymerase complex;0.00153762129456736!GO:0016197;endosome transport;0.00158888356709997!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00158888356709997!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00158888356709997!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00158888356709997!GO:0006650;glycerophospholipid metabolic process;0.0016808397397303!GO:0046489;phosphoinositide biosynthetic process;0.00171310841338687!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0017796700453593!GO:0006519;amino acid and derivative metabolic process;0.00182075514290658!GO:0051540;metal cluster binding;0.0018540573369419!GO:0051536;iron-sulfur cluster binding;0.0018540573369419!GO:0051427;hormone receptor binding;0.00191830926573764!GO:0004576;oligosaccharyl transferase activity;0.00191964226386477!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00192619886506366!GO:0045047;protein targeting to ER;0.00192619886506366!GO:0005637;nuclear inner membrane;0.00212613756308517!GO:0007040;lysosome organization and biogenesis;0.0021991235036534!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0022563577965101!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0022563577965101!GO:0003684;damaged DNA binding;0.00227103729073339!GO:0005769;early endosome;0.00230835203239326!GO:0008250;oligosaccharyl transferase complex;0.00246252826753638!GO:0031252;leading edge;0.00249253739963439!GO:0008312;7S RNA binding;0.0025249147289607!GO:0006506;GPI anchor biosynthetic process;0.00274669845346443!GO:0008139;nuclear localization sequence binding;0.00278921731210259!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00293660442363087!GO:0006405;RNA export from nucleus;0.002982151814575!GO:0030660;Golgi-associated vesicle membrane;0.0029850813314701!GO:0003924;GTPase activity;0.00299029732452519!GO:0015631;tubulin binding;0.00303110560463365!GO:0005657;replication fork;0.00309992425155779!GO:0015980;energy derivation by oxidation of organic compounds;0.00319129993857412!GO:0006289;nucleotide-excision repair;0.00322277334025173!GO:0009451;RNA modification;0.00323062261637541!GO:0006611;protein export from nucleus;0.00329564161900406!GO:0022415;viral reproductive process;0.00329943526866667!GO:0001836;release of cytochrome c from mitochondria;0.00333220593300202!GO:0016126;sterol biosynthetic process;0.00334347664185493!GO:0035257;nuclear hormone receptor binding;0.00341065905625435!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00341065905625435!GO:0031970;organelle envelope lumen;0.00346563404539123!GO:0006505;GPI anchor metabolic process;0.00349544419483531!GO:0048522;positive regulation of cellular process;0.003531927024875!GO:0006310;DNA recombination;0.00360066269608839!GO:0000776;kinetochore;0.00362147301643129!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0038354129311465!GO:0000097;sulfur amino acid biosynthetic process;0.00388003864831963!GO:0006807;nitrogen compound metabolic process;0.00425389695294208!GO:0007093;mitotic cell cycle checkpoint;0.00428510552789534!GO:0018196;peptidyl-asparagine modification;0.00436574476027116!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00436574476027116!GO:0005665;DNA-directed RNA polymerase II, core complex;0.00438628854145244!GO:0008234;cysteine-type peptidase activity;0.00456536675340836!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00457741448582838!GO:0045045;secretory pathway;0.00457754643890673!GO:0004540;ribonuclease activity;0.00479556949214665!GO:0051539;4 iron, 4 sulfur cluster binding;0.00490927153387548!GO:0030118;clathrin coat;0.00493423924990467!GO:0051098;regulation of binding;0.00503940019653079!GO:0006778;porphyrin metabolic process;0.00527747114540755!GO:0033013;tetrapyrrole metabolic process;0.00527747114540755!GO:0003678;DNA helicase activity;0.00558333989790482!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.00561892347795173!GO:0051059;NF-kappaB binding;0.00576883180159886!GO:0000287;magnesium ion binding;0.00581874777044452!GO:0007088;regulation of mitosis;0.00584062024341487!GO:0006516;glycoprotein catabolic process;0.00585536248122241!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00611591681623568!GO:0050789;regulation of biological process;0.00616206134842446!GO:0009070;serine family amino acid biosynthetic process;0.00636502866306251!GO:0003711;transcription elongation regulator activity;0.00644692204526839!GO:0012502;induction of programmed cell death;0.00659542702169031!GO:0051235;maintenance of localization;0.00662807551763357!GO:0016859;cis-trans isomerase activity;0.00676342877610895!GO:0007033;vacuole organization and biogenesis;0.00683432669759959!GO:0006118;electron transport;0.0070410718081134!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00713136284523879!GO:0032561;guanyl ribonucleotide binding;0.00723546633798277!GO:0019001;guanyl nucleotide binding;0.00723546633798277!GO:0005684;U2-dependent spliceosome;0.00736102797031519!GO:0046983;protein dimerization activity;0.00750477670086716!GO:0005758;mitochondrial intermembrane space;0.00758416299303673!GO:0006350;transcription;0.00773065441894836!GO:0051252;regulation of RNA metabolic process;0.00773654380798717!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.00799514529129534!GO:0051087;chaperone binding;0.00820613088725382!GO:0016272;prefoldin complex;0.00852338187774075!GO:0006917;induction of apoptosis;0.0085369123515193!GO:0043022;ribosome binding;0.00859598721022866!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.00870912675061307!GO:0005669;transcription factor TFIID complex;0.00875291161726833!GO:0030134;ER to Golgi transport vesicle;0.00875937447417919!GO:0004860;protein kinase inhibitor activity;0.00882284899672599!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.00882437714932893!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00887669970584248!GO:0009308;amine metabolic process;0.00915976165181069!GO:0004532;exoribonuclease activity;0.00929502500504962!GO:0016896;exoribonuclease activity, producing 5'-phosphomonoesters;0.00929502500504962!GO:0006595;polyamine metabolic process;0.00964985334119553!GO:0030433;ER-associated protein catabolic process;0.00965480279947661!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.00965480279947661!GO:0051881;regulation of mitochondrial membrane potential;0.00983682358497222!GO:0006695;cholesterol biosynthetic process;0.00992274984748693!GO:0046822;regulation of nucleocytoplasmic transport;0.0100098086936368!GO:0003746;translation elongation factor activity;0.0102083287617151!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0102153274871336!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0106417345448444!GO:0019843;rRNA binding;0.0107364605531103!GO:0051336;regulation of hydrolase activity;0.0109001503239345!GO:0008408;3'-5' exonuclease activity;0.0109001503239345!GO:0008017;microtubule binding;0.0109904597371842!GO:0046467;membrane lipid biosynthetic process;0.0111858770747945!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0112454684111822!GO:0045069;regulation of viral genome replication;0.0113509224476219!GO:0006367;transcription initiation from RNA polymerase II promoter;0.0113509224476219!GO:0010468;regulation of gene expression;0.0116582288030146!GO:0031124;mRNA 3'-end processing;0.0119063228434748!GO:0009892;negative regulation of metabolic process;0.0119063228434748!GO:0043284;biopolymer biosynthetic process;0.0119174536463753!GO:0006779;porphyrin biosynthetic process;0.0121384410061503!GO:0033014;tetrapyrrole biosynthetic process;0.0121384410061503!GO:0007034;vacuolar transport;0.0121384410061503!GO:0006497;protein amino acid lipidation;0.0121384410061503!GO:0006368;RNA elongation from RNA polymerase II promoter;0.0122360011500597!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0123808488427662!GO:0003725;double-stranded RNA binding;0.0124452765644311!GO:0008022;protein C-terminus binding;0.0126008728502395!GO:0030503;regulation of cell redox homeostasis;0.0128695579517353!GO:0042168;heme metabolic process;0.0132454989865489!GO:0000082;G1/S transition of mitotic cell cycle;0.0133269804448662!GO:0019079;viral genome replication;0.0133430429683157!GO:0042770;DNA damage response, signal transduction;0.0133570716068283!GO:0032981;mitochondrial respiratory chain complex I assembly;0.013441375682217!GO:0010257;NADH dehydrogenase complex assembly;0.013441375682217!GO:0033108;mitochondrial respiratory chain complex assembly;0.013441375682217!GO:0032940;secretion by cell;0.0136007591115632!GO:0045936;negative regulation of phosphate metabolic process;0.0137187129161456!GO:0000123;histone acetyltransferase complex;0.013804309769783!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0139380396588733!GO:0016584;nucleosome positioning;0.0139380396588733!GO:0009127;purine nucleoside monophosphate biosynthetic process;0.0139380396588733!GO:0009167;purine ribonucleoside monophosphate metabolic process;0.0139380396588733!GO:0009126;purine nucleoside monophosphate metabolic process;0.0139380396588733!GO:0009168;purine ribonucleoside monophosphate biosynthetic process;0.0139380396588733!GO:0043488;regulation of mRNA stability;0.0139716328582925!GO:0043487;regulation of RNA stability;0.0139716328582925!GO:0030119;AP-type membrane coat adaptor complex;0.0140184327113659!GO:0050662;coenzyme binding;0.0141393748766566!GO:0030125;clathrin vesicle coat;0.0149637812339283!GO:0030665;clathrin coated vesicle membrane;0.0149637812339283!GO:0005869;dynactin complex;0.0153107537530468!GO:0030127;COPII vesicle coat;0.015317906703786!GO:0012507;ER to Golgi transport vesicle membrane;0.015317906703786!GO:0009081;branched chain family amino acid metabolic process;0.0153737510412436!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0156427024375198!GO:0006950;response to stress;0.0156845385160048!GO:0031625;ubiquitin protein ligase binding;0.0157217611498885!GO:0000059;protein import into nucleus, docking;0.0157217611498885!GO:0008180;signalosome;0.0157580672929614!GO:0032507;maintenance of cellular protein localization;0.01577138150871!GO:0000786;nucleosome;0.0158831052223787!GO:0005832;chaperonin-containing T-complex;0.0161392988495094!GO:0004674;protein serine/threonine kinase activity;0.0163524015843909!GO:0043189;H4/H2A histone acetyltransferase complex;0.0165070754877242!GO:0009124;nucleoside monophosphate biosynthetic process;0.0166718477415336!GO:0009123;nucleoside monophosphate metabolic process;0.0166718477415336!GO:0048037;cofactor binding;0.0168387559622694!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.0169455294114978!GO:0046966;thyroid hormone receptor binding;0.0172494558073206!GO:0005777;peroxisome;0.0173701649755814!GO:0042579;microbody;0.0173701649755814!GO:0008320;protein transmembrane transporter activity;0.0174581855943517!GO:0009112;nucleobase metabolic process;0.0175568818926599!GO:0047485;protein N-terminus binding;0.0177412382024855!GO:0006376;mRNA splice site selection;0.0181556668149482!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0181556668149482!GO:0009161;ribonucleoside monophosphate metabolic process;0.0184595070821074!GO:0009156;ribonucleoside monophosphate biosynthetic process;0.0184595070821074!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0185882104834031!GO:0000030;mannosyltransferase activity;0.0187575442161023!GO:0030131;clathrin adaptor complex;0.0187690943904787!GO:0007059;chromosome segregation;0.0194403638504722!GO:0030508;thiol-disulfide exchange intermediate activity;0.0194457485655803!GO:0046982;protein heterodimerization activity;0.0194457485655803!GO:0007052;mitotic spindle organization and biogenesis;0.0196602946055126!GO:0008610;lipid biosynthetic process;0.0198380183864796!GO:0009066;aspartate family amino acid metabolic process;0.0201905081531553!GO:0035267;NuA4 histone acetyltransferase complex;0.0205034629860978!GO:0005791;rough endoplasmic reticulum;0.020554668876845!GO:0022406;membrane docking;0.0208901141099112!GO:0048278;vesicle docking;0.0208901141099112!GO:0016481;negative regulation of transcription;0.0209687648584885!GO:0048487;beta-tubulin binding;0.0212185963798108!GO:0009067;aspartate family amino acid biosynthetic process;0.0213015588203317!GO:0051052;regulation of DNA metabolic process;0.0213136385462809!GO:0031123;RNA 3'-end processing;0.0214226699373793!GO:0030132;clathrin coat of coated pit;0.0216426521669552!GO:0000178;exosome (RNase complex);0.0222469587853149!GO:0015036;disulfide oxidoreductase activity;0.0222559767673699!GO:0022884;macromolecule transmembrane transporter activity;0.0225009217179262!GO:0015450;P-P-bond-hydrolysis-driven protein transmembrane transporter activity;0.0225009217179262!GO:0006400;tRNA modification;0.0231773684514451!GO:0003682;chromatin binding;0.0231773684514451!GO:0008094;DNA-dependent ATPase activity;0.0233339053086254!GO:0032200;telomere organization and biogenesis;0.0235646446810931!GO:0000723;telomere maintenance;0.0235646446810931!GO:0006378;mRNA polyadenylation;0.0235646446810931!GO:0006144;purine base metabolic process;0.024182289024624!GO:0033673;negative regulation of kinase activity;0.0242608633884773!GO:0006469;negative regulation of protein kinase activity;0.0242608633884773!GO:0051651;maintenance of cellular localization;0.0243834737274897!GO:0051452;cellular pH reduction;0.0246478464336184!GO:0051453;regulation of cellular pH;0.0246478464336184!GO:0045851;pH reduction;0.0246478464336184!GO:0045185;maintenance of protein localization;0.0247056822726904!GO:0001726;ruffle;0.0249328942080288!GO:0008538;proteasome activator activity;0.02520358557908!GO:0006338;chromatin remodeling;0.0263170255870898!GO:0005744;mitochondrial inner membrane presequence translocase complex;0.0267711430157758!GO:0008097;5S rRNA binding;0.0271480869824954!GO:0004300;enoyl-CoA hydratase activity;0.0275872685233552!GO:0006354;RNA elongation;0.0278005831494589!GO:0042326;negative regulation of phosphorylation;0.0280588267810627!GO:0006564;L-serine biosynthetic process;0.0288297881432763!GO:0019058;viral infectious cycle;0.0289383585820479!GO:0006783;heme biosynthetic process;0.0297506219924918!GO:0000339;RNA cap binding;0.0298622064467063!GO:0051101;regulation of DNA binding;0.0298622064467063!GO:0015923;mannosidase activity;0.0300861390386874!GO:0042158;lipoprotein biosynthetic process;0.0301307049751702!GO:0046979;TAP2 binding;0.0301307049751702!GO:0046977;TAP binding;0.0301307049751702!GO:0046978;TAP1 binding;0.0301307049751702!GO:0030659;cytoplasmic vesicle membrane;0.030287925545974!GO:0051716;cellular response to stimulus;0.0304535914976154!GO:0000152;nuclear ubiquitin ligase complex;0.0304916712428582!GO:0019210;kinase inhibitor activity;0.0304916712428582!GO:0006904;vesicle docking during exocytosis;0.0308043235107591!GO:0046914;transition metal ion binding;0.0322580885674206!GO:0051348;negative regulation of transferase activity;0.0323406667015105!GO:0042987;amyloid precursor protein catabolic process;0.0323816170499116!GO:0005784;translocon complex;0.0332055801149985!GO:0006740;NADPH regeneration;0.0332055801149985!GO:0006098;pentose-phosphate shunt;0.0332055801149985!GO:0009303;rRNA transcription;0.0346922066583591!GO:0004519;endonuclease activity;0.0350297740022975!GO:0003857;3-hydroxyacyl-CoA dehydrogenase activity;0.03527961858476!GO:0044262;cellular carbohydrate metabolic process;0.0355060619729858!GO:0017134;fibroblast growth factor binding;0.0357480669665721!GO:0045767;regulation of anti-apoptosis;0.0360956118088468!GO:0006984;ER-nuclear signaling pathway;0.036625826291474!GO:0003988;acetyl-CoA C-acyltransferase activity;0.0366918700829551!GO:0006458;'de novo' protein folding;0.0366918700829551!GO:0051084;'de novo' posttranslational protein folding;0.0366918700829551!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0370746313539696!GO:0008270;zinc ion binding;0.0371365699464071!GO:0016408;C-acyltransferase activity;0.0373204495521417!GO:0006672;ceramide metabolic process;0.0373435567948191!GO:0005876;spindle microtubule;0.0374484859014703!GO:0042771;DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis;0.0379416676735457!GO:0030911;TPR domain binding;0.0384193857788822!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0385888125942017!GO:0012506;vesicle membrane;0.0388953464763617!GO:0032039;integrator complex;0.0401214342735839!GO:0008287;protein serine/threonine phosphatase complex;0.0407241826160404!GO:0006607;NLS-bearing substrate import into nucleus;0.0412328076298771!GO:0009396;folic acid and derivative biosynthetic process;0.0412740527921064!GO:0000175;3'-5'-exoribonuclease activity;0.0413510393326882!GO:0050792;regulation of viral reproduction;0.0427513929579255!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0428467614157893!GO:0016125;sterol metabolic process;0.0431321566874713!GO:0004861;cyclin-dependent protein kinase inhibitor activity;0.0435495406784801!GO:0019901;protein kinase binding;0.043808059172231!GO:0031575;G1/S transition checkpoint;0.0438595484901907!GO:0000209;protein polyubiquitination;0.0441143000203923!GO:0016788;hydrolase activity, acting on ester bonds;0.0444789989333187!GO:0043087;regulation of GTPase activity;0.0449586439533129!GO:0045368;positive regulation of interleukin-13 biosynthetic process;0.0451592991689!GO:0045366;regulation of interleukin-13 biosynthetic process;0.0451592991689!GO:0051338;regulation of transferase activity;0.0451592991689!GO:0048468;cell development;0.0455609816008805!GO:0003923;GPI-anchor transamidase activity;0.0455609816008805!GO:0016255;attachment of GPI anchor to protein;0.0455609816008805!GO:0042765;GPI-anchor transamidase complex;0.0455609816008805!GO:0022411;cellular component disassembly;0.0455817800065053!GO:0006013;mannose metabolic process;0.0461183760800016!GO:0004526;ribonuclease P activity;0.0461183760800016!GO:0005801;cis-Golgi network;0.0464285420831244!GO:0048518;positive regulation of biological process;0.0467458549313326!GO:0007041;lysosomal transport;0.0467731767178361!GO:0031371;ubiquitin conjugating enzyme complex;0.0468643657144255!GO:0043281;regulation of caspase activity;0.0470612960444669!GO:0042719;mitochondrial intermembrane space protein transporter complex;0.0471597656713543!GO:0045039;protein import into mitochondrial inner membrane;0.0471597656713543!GO:0006487;protein amino acid N-linked glycosylation;0.0474227024504045!GO:0000738;DNA catabolic process, exonucleolytic;0.0475963441814783!GO:0003756;protein disulfide isomerase activity;0.047940690438158!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.047940690438158!GO:0043596;nuclear replication fork;0.0486367547945935!GO:0031647;regulation of protein stability;0.0498391093414279!GO:0043549;regulation of kinase activity;0.0499954726075732!GO:0046519;sphingoid metabolic process;0.0499954726075732
|sample_id=10474
|sample_note=
|sample_sex=female
|sample_species=Human (Homo sapiens)
|sample_strain=
|sample_tissue=blood
|top_motifs=DMAP1_NCOR{1,2}_SMARC:2.42861289972;POU5F1:2.10576003138;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.7918759524;HAND1,2:1.78734776743;FOXQ1:1.74535919858;ELK1,4_GABP{A,B1}:1.74221910244;IRF7:1.66497776521;IRF1,2:1.62180647369;TEF:1.50415149509;ELF1,2,4:1.46505133679;PAX6:1.38428191089;HOX{A4,D4}:1.35520233574;YY1:1.31799611919;VSX1,2:1.30579006122;NKX6-1,2:1.27779213551;MYOD1:1.23460129199;MYB:1.17776288491;HOXA9_MEIS1:1.14933377941;OCT4_SOX2{dimer}:1.11576199409;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.07687043164;POU2F1..3:1.00013313755;NKX2-2,8:0.977371225321;AIRE:0.951227911707;FOXM1:0.943506000321;ALX1:0.934650658695;CUX2:0.886448087061;LMO2:0.884132431535;FOXA2:0.88377645864;CEBPA,B_DDIT3:0.809553578381;TLX2:0.756429431536;EVI1:0.719279321252;ZBTB16:0.718303908009;SPI1:0.688176709607;FOXP3:0.664747798121;NFY{A,B,C}:0.654614059592;NR5A1,2:0.582022890791;IKZF2:0.567123747851;DBP:0.539626736693;ZNF384:0.537350110641;ZEB1:0.503145128638;FOX{F1,F2,J1}:0.485553455389;ADNP_IRX_SIX_ZHX:0.480387583542;RUNX1..3:0.469176157059;ZNF143:0.454912010905;POU1F1:0.449574948531;FOXP1:0.443459629015;PAX3,7:0.428730795804;PAX1,9:0.410887447657;TGIF1:0.406121697532;NFKB1_REL_RELA:0.394846986911;POU3F1..4:0.381813458063;STAT5{A,B}:0.376840908539;CDC5L:0.358552305925;SREBF1,2:0.346429900971;bHLH_family:0.341437671895;ATF4:0.31312259938;AHR_ARNT_ARNT2:0.297970578792;NRF1:0.289628728909;MAFB:0.274316720412;ATF5_CREB3:0.264993673671;NFIL3:0.258897693717;BPTF:0.231359366514;PBX1:0.212327974242;CDX1,2,4:0.210028434865;SPIB:0.195829407308;PAX2:0.167034032221;FOX{I1,J2}:0.141983351577;NKX2-1,4:0.131982748534;SNAI1..3:0.123290344288;ZNF423:0.0977692355418;GATA6:0.0958434020521;PAX8:0.0780344050786;GFI1:0.0736746043901;PRRX1,2:0.0681353794794;NFE2:0.0333188852512;RXRA_VDR{dimer}:0.0271038387809;HOX{A6,A7,B6,B7}:0.0232340420534;MYBL2:0.0231244871517;FOXN1:0.0118475661259;ETS1,2:-0.000371967050046;PAX4:-0.00708041916617;E2F1..5:-0.0175239234918;RFX2..5_RFXANK_RFXAP:-0.017894951188;ZNF238:-0.022199702802;SOX{8,9,10}:-0.0266722935549;STAT2,4,6:-0.0267068835746;RORA:-0.0283227470179;SOX17:-0.0299723387628;CRX:-0.0337149165748;AR:-0.0519499074051;HNF4A_NR2F1,2:-0.0525562979202;CREB1:-0.0621678947993;PPARG:-0.103948838091;NFE2L2:-0.125863433997;SOX5:-0.148841019141;BREu{core}:-0.149917238912;ONECUT1,2:-0.152445761833;HIF1A:-0.165774786584;MYFfamily:-0.180939290312;NKX3-2:-0.180943393971;GFI1B:-0.189659526604;HLF:-0.211720543876;HNF1A:-0.214685252745;FOSL2:-0.225280221825;FOXO1,3,4:-0.225728077151;TFAP4:-0.264196960337;ATF2:-0.267381982235;HES1:-0.275478833948;RBPJ:-0.301149076896;LHX3,4:-0.312995040814;STAT1,3:-0.347400640393;NHLH1,2:-0.348253404879;MEF2{A,B,C,D}:-0.35567867563;NR6A1:-0.370473460614;FOS_FOS{B,L1}_JUN{B,D}:-0.382419041545;HMX1:-0.384260871033;ATF6:-0.388284181336;TAL1_TCF{3,4,12}:-0.401190010679;HOX{A5,B5}:-0.412113479909;PITX1..3:-0.448603811269;ARID5B:-0.456307605224;SMAD1..7,9:-0.458995402259;NANOG{mouse}:-0.460623156546;NFE2L1:-0.470724312193;BACH2:-0.475542569554;REST:-0.496756902774;GCM1,2:-0.499543157612;ESRRA:-0.504142595839;TFCP2:-0.508856610572;UFEwm:-0.508891512961;POU6F1:-0.513144760946;LEF1_TCF7_TCF7L1,2:-0.598488137881;HMGA1,2:-0.607256038661;FOXD3:-0.614077847089;SOX2:-0.636772486207;ZNF148:-0.655339044552;GTF2A1,2:-0.665131963712;IKZF1:-0.681826957629;HBP1_HMGB_SSRP1_UBTF:-0.720165162792;TOPORS:-0.722177893831;PDX1:-0.747962415663;MTF1:-0.758909008258;FOX{D1,D2}:-0.773783176251;NR1H4:-0.781868073306;ESR1:-0.786386389909;ALX4:-0.816852188119;EBF1:-0.835843870278;RREB1:-0.839780652259;TLX1..3_NFIC{dimer}:-0.842617802505;SRF:-0.845825769627;NKX2-3_NKX2-5:-0.851265268594;RXR{A,B,G}:-0.87150833936;ZFP161:-0.879517435192;NKX3-1:-0.891457664854;GATA4:-0.90001621063;ZIC1..3:-0.922384415377;RFX1:-0.922669933048;EP300:-0.949113658556;EN1,2:-0.95098389314;TFDP1:-0.953762859351;PRDM1:-0.976359031693;SPZ1:-0.976690406509;XBP1:-0.979972911247;TP53:-0.981623688586;FOXL1:-1.04894830015;JUN:-1.05036014849;MAZ:-1.05438094424;TFAP2{A,C}:-1.056632685;KLF4:-1.05667535824;T:-1.06161386758;ZBTB6:-1.1566145532;MZF1:-1.15965716112;NFATC1..3:-1.1849972039;HIC1:-1.19703097348;NANOG:-1.25627658786;TEAD1:-1.26957059833;XCPE1{core}:-1.29081781147;GTF2I:-1.30238253303;PAX5:-1.30749421266;GLI1..3:-1.31733138318;MTE{core}:-1.34567237873;NFIX:-1.35293104593;NR3C1:-1.37484625132;PATZ1:-1.38674876193;HSF1,2:-1.40588175731;GZF1:-1.49687440796;MED-1{core}:-1.52568967434;SP1:-1.58505601305;EGR1..3:-1.59081254011;TFAP2B:-1.60095994484;TBX4,5:-1.76273208283;TBP:-1.88216772102
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10474-106I6;search_select_hide=table117:FF:10474-106I6
}}
}}

Latest revision as of 14:25, 3 June 2020

Name:myeloma cell line:PCM6
Species:Human (Homo sapiens)
Library ID:CNhs11258
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stageNA
sexfemale
age60
cell typeb cell
cell linePCM6
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004771
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11258 CAGE DRX007957 DRR008829
Accession ID Hg19

Library idBAMCTSS
CNhs11258 DRZ000254 DRZ001639
Accession ID Hg38

Library idBAMCTSS
CNhs11258 DRZ011604 DRZ012989
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload
HumanCAGEScan Download raw sequence, BAM & CTSS

Library id3prime-FASTQ5prime-FASTQBAMCTSS
NCig10067downloaddownloaddownloaddownload
NCig10131downloaddownloaddownloaddownload

RNA-Seq Accession numbers
MethodSample accession id
RNA-Seq  SAMD00004771
Library accession numbers

Library idMethodExp. accession idRun accession id
RDhi10068 RNA-Seq DRX057125 DRR062884
Accession ID Hg19

Library idBAMCTSS
RDhi10068 DRZ007960


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0772
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.0601
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea1.074
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.069
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.00654
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.183
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.069
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0719
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.124
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.0407
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.127
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.069
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.0221
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.00645
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.109
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.27
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11258

Jaspar motifP-value
MA0002.20.00986
MA0003.10.559
MA0004.10.103
MA0006.10.407
MA0007.10.936
MA0009.10.747
MA0014.10.818
MA0017.10.116
MA0018.20.118
MA0019.10.06
MA0024.10.606
MA0025.10.591
MA0027.10.673
MA0028.13.8864e-7
MA0029.10.116
MA0030.10.0933
MA0031.10.173
MA0035.20.896
MA0038.10.0279
MA0039.20.836
MA0040.10.482
MA0041.10.279
MA0042.10.809
MA0043.10.547
MA0046.10.659
MA0047.20.916
MA0048.10.593
MA0050.12.93597e-23
MA0051.11.21924e-14
MA0052.10.148
MA0055.10.517
MA0057.10.958
MA0058.10.049
MA0059.10.0032
MA0060.10.0395
MA0061.10.0189
MA0062.28.08783e-12
MA0065.20.0137
MA0066.10.507
MA0067.10.978
MA0068.10.131
MA0069.10.986
MA0070.10.9
MA0071.10.701
MA0072.10.843
MA0073.10.719
MA0074.10.778
MA0076.15.37819e-11
MA0077.10.0329
MA0078.10.25
MA0079.20.372
MA0080.21.13978e-5
MA0081.10.0026
MA0083.10.0809
MA0084.10.571
MA0087.10.0606
MA0088.10.0162
MA0090.19.28571e-5
MA0091.10.576
MA0092.10.965
MA0093.10.109
MA0099.20.217
MA0100.10.208
MA0101.10.231
MA0102.20.334
MA0103.10.02
MA0104.20.00548
MA0105.11.18891e-5
MA0106.10.761
MA0107.10.104
MA0108.22.1794e-19
MA0111.10.468
MA0112.20.0455
MA0113.10.471
MA0114.10.0109
MA0115.10.123
MA0116.14.42599e-5
MA0117.10.596
MA0119.10.422
MA0122.10.497
MA0124.10.129
MA0125.10.534
MA0131.10.0919
MA0135.11.49875e-4
MA0136.15.2634e-8
MA0137.20.381
MA0138.20.835
MA0139.10.0787
MA0140.10.475
MA0141.10.234
MA0142.10.115
MA0143.10.772
MA0144.10.949
MA0145.10.645
MA0146.10.0319
MA0147.10.00919
MA0148.10.261
MA0149.10.162
MA0150.10.106
MA0152.10.174
MA0153.10.0886
MA0154.10.032
MA0155.10.54
MA0156.14.29527e-10
MA0157.10.941
MA0159.10.00602
MA0160.10.181
MA0162.10.461
MA0163.11.52959e-11
MA0164.10.903
MA0258.10.152
MA0259.10.129



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11258

Novel motifP-value
10.00985
100.00996
1000.504
1010.207
1020.538
1030.0551
1040.558
1050.986
1060.476
1070.294
1080.526
1090.045
110.108
1100.196
1110.0305
1120.121
1130.864
1140.268
1150.242
1160.763
1170.00123
1180.377
1190.105
120.863
1200.254
1210.719
1220.722
1230.00548
1240.426
1250.592
1260.189
1270.968
1280.298
1290.316
130.0983
1300.838
1310.238
1320.293
1330.211
1340.779
1350.0931
1360.235
1370.443
1380.238
1390.574
140.599
1400.128
1410.208
1420.656
1430.506
1440.985
1450.588
1460.986
1470.212
1480.0194
1490.922
150.338
1500.353
1510.916
1520.926
1530.798
1540.865
1550.0521
1560.148
1570.393
1580.321
1590.594
160.419
1600.542
1610.0457
1620.29
1630.362
1640.115
1650.347
1660.612
1670.205
1680.709
1690.0575
170.565
180.0221
190.888
20.463
200.346
210.588
220.75
230.629
240.383
250.0899
260.085
270.444
280.624
290.101
30.154
300.0772
310.79
320.775
330.269
340.36
350.436
360.0323
370.0632
380.482
390.697
40.959
400.431
410.918
420.269
430.253
440.0356
450.483
460.145
470.0336
480.0779
490.271
50.476
500.603
510.602
520.139
530.945
540.692
550.974
560.897
570.161
580.175
590.977
60.658
600.636
610.165
620.165
630.592
640.213
650.722
660.176
670.632
680.0483
690.837
70.0999
700.143
710.0319
720.0839
730.125
740.568
750.00157
760.269
770.654
780.0651
790.366
80.187
800.969
810.0212
820.283
830.818
840.994
850.345
860.328
870.192
880.868
890.68
90.7
900.0112
910.969
920.411
930.725
940.0151
950.028
960.138
970.373
980.328
990.202



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11258


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000542 (lymphocyte)
0000219 (motile cell)
0000945 (lymphocyte of B lineage)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0002242 (nucleate cell)
0000255 (eukaryotic cell)
0002092 (bone marrow cell)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
4960 (bone marrow cancer)
0070004 (myeloma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002371 (bone marrow)
0001474 (bone element)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0004765 (skeletal element)
0010317 (germ layer / neural crest derived structure)
0002204 (musculoskeletal system)
0001434 (skeletal system)
0002390 (hematopoietic system)
0002193 (hemolymphoid system)
0002405 (immune system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100583 (bone marrow cancer cell sample)
0100898 (myeloma cell sample)
0100899 (myeloma cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000051 (common lymphoid progenitor)
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0010316 (germ layer / neural crest)

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