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{{f5samples
{{f5samples
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0001474,UBERON:0002384,UBERON:0000926,UBERON:0000479,UBERON:0000062,UBERON:0004765,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0006598,UBERON:0002532,UBERON:0002204,UBERON:0001434,UBERON:0006603
|DRA_sample_Accession=CAGE@SAMD00004684
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000055,CL:0000144,CL:0000723,CL:0000035,CL:0000048,CL:0000548,CL:0000034,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000219,CL:0000004,CL:0000134,CL:0000255,CL:0000062,CL:0000375,CL:0000335
|accession_numbers=CAGE;DRX007977;DRR008849;DRZ000274;DRZ001659;DRZ011624;DRZ013009
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0001474,UBERON:0002384,UBERON:0000479,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0004765,UBERON:0002204,UBERON:0001434
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000055,CL:0000003,CL:0000548,CL:0002320,CL:0002371,CL:0000255,CL:0000062
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:201,DOID:0060100,DOID:3347
|ancestors_in_disease_facet=DOID:4,DOID:0050686,DOID:162,DOID:14566,DOID:201,DOID:0060100,DOID:3347
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100385,FF:0100407
|comment=
|comment=
|created_by=
|created_by=
|creation_date=
|creation_date=
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr12:66218255..66218304,+!p3@HMGA2!2.02!266.48!HMGA2;;chr1:25291475..25291511,-!p2@RUNX3!1.96!90.44!RUNX3;;chr9:77112244..77112262,+!p1@RORB!1.89!85.60!RORB;;chr8:80679993..80680011,-!p1@HEY1!1.81!89.75!HEY1;;chr6:34204921..34204939,+!p3@HMGA1!1.74!1537.43!HMGA1;;chr8:10588010..10588030,-!p1@SOX7!1.73!53.16!SOX7;;chr8:106330656..106330684,+!p1@ZFPM2!1.67!115.29!ZFPM2;;chr20:55204351..55204377,+!p1@TFAP2C!1.65!55.23!TFAP2C;;chr17:35294075..35294102,+!p1@ENST00000559335!1.65!44.18!LHX1;;chr12:66218212..66218244,+!p5@HMGA2!1.59!53.85!HMGA2;;chr6:1312325..1312340,+!p1@FOXQ1!1.55!55.92!FOXQ1;;chr12:77459306..77459365,-!p1@E2F7!1.52!385.91!E2F7;;chr12:27485762..27485776,+!p3@ARNTL2!1.51!82.15!ARNTL2;;chr12:66218378..66218401,+!p6@HMGA2!1.51!47.63!HMGA2;;chr20:55205825..55205847,+!p2@TFAP2C!1.50!30.38!TFAP2C;;chr6:34210478..34210481,+!p8@HMGA1!1.49!29.69!HMGA1;;chr16:86544113..86544145,+!p1@FOXF1!1.45!33.83!FOXF1;;chr9:77112225..77112238,+!p2@RORB!1.44!26.23!RORB;;chr12:66218183..66218209,+!p4@HMGA2!1.43!49.02!HMGA2;;chr2:172967621..172967637,-!p1@DLX2!1.42!66.27!DLX2;;chr12:66218443..66218461,+!p8@HMGA2!1.39!29.69!HMGA2;;chr11:65667884..65667895,-!p2@FOSL1!1.38!86.29!FOSL1;;chr3:169381420..169381535,-!p1@MECOM!1.38!26.92!MECOM;;chr11:65667846..65667868,-!p1@FOSL1!1.37!571.62!FOSL1;;chr11:65686732..65686756,+!p2@DRAP1!1.32!82.15!DRAP1;;chr12:66218598..66218645,+!p2@HMGA2!1.31!87.68!HMGA2;;chr5:2751762..2751784,-!p1@IRX2!1.31!19.33!IRX2;;chr17:41622925..41622976,-!p3@ETV4!1.30!28.30!ETV4;;chr8:106330696..106330719,+!p2@ZFPM2!1.29!23.47!ZFPM2;;chr1:25291620..25291635,-!p4@RUNX3!1.29!18.64!RUNX3;;chr20:42543441..42543497,+!p1@TOX2!1.27!78.01!TOX2;;chr17:70117153..70117174,+!p1@SOX9!1.26!171.21!SOX9;;chr7:27205106..27205134,-!p2@HOXA9!1.26!17.26!HOXA9;;chr12:27485785..27485816,+!p1@ARNTL2!1.24!111.15!ARNTL2;;chr8:80680024..80680046,-!p2@HEY1!1.24!18.64!HEY1;;chr7:27153454..27153469,-!p2@HOXA3!1.24!16.57!HOXA3;;chr9:132427972..132428056,+!p1@PRRX2!1.23!20.71!PRRX2;;chr12:66218003..66218018,+!p9@HMGA2!1.23!19.33!HMGA2;;chr8:22550982..22550999,-!p1@EGR3!1.22!43.49!EGR3;;chr16:86600426..86600441,+!p1@FOXC2!1.22!37.97!FOXC2;;chr12:66218836..66218888,+!p1@HMGA2!1.21!140.83!HMGA2;;chr17:41622765..41622821,-!p2@ETV4!1.19!22.09!ETV4;;chr6:391743..391759,+!p1@IRF4!1.19!14.50!IRF4;;chr8:55370487..55370503,+!p1@SOX17!1.19!14.50!SOX17;;chr17:41623009..41623053,-!p4@ETV4!1.18!22.78!ETV4;;chr1:170633348..170633399,+!p2@PRRX1!1.18!19.33!PRRX1;;chr15:83953397..83953425,-!p1@BNC1!1.17!15.88!BNC1;;chr7:28725740..28725778,+!p1@CREB5!1.15!115.98!CREB5;;chr7:35293685..35293718,-!p1@TBX20!1.15!13.12!TBX20;;chr8:106330543..106330554,+!p4@ZFPM2!1.15!13.12!ZFPM2;;chr20:55205791..55205817,+!p3@TFAP2C!1.15!13.12!TFAP2C;;chr4:4861385..4861398,+!p1@MSX1!1.14!37.97!MSX1;;chr11:65686802..65686818,+!p6@DRAP1!1.14!22.09!DRAP1;;chr1:170632959..170632987,+!p4@PRRX1!1.13!13.81!PRRX1;;chr7:14029283..14029311,-!p1@ETV1!1.12!64.89!ETV1;;chr1:8763440..8763460,-!p2@RERE!1.11!59.37!RERE;;chr11:65687362..65687436,+!p3@DRAP1!1.11!53.85!DRAP1;;chr12:27485823..27485868,+!p2@ARNTL2!1.11!48.33!ARNTL2;;chr17:41622834..41622883,-!p6@ETV4!1.11!14.50!ETV4;;chr6:29648890..29648944,-!p1@ZFP57!1.11!11.74!ZFP57;;chr13:100634130..100634143,+!p3@ZIC2!1.11!11.74!ZIC2;;chr6:34204672..34204692,+!p1@HMGA1!1.09!1268.88!HMGA1;;chr12:96588368..96588394,+!p3@ELK3!1.09!30.38!ELK3;;chr2:200322654..200322707,-!p2@SATB2!1.09!16.57!SATB2;;chr2:101436564..101436647,+!p1@NPAS2!1.08!222.30!NPAS2;;chr1:170632285..170632309,+!p1@PRRX1!1.08!12.43!PRRX1;;chr12:66218152..66218174,+!p10@HMGA2!1.08!11.74!HMGA2;;chr2:239756739..239756755,+!p2@TWIST2!1.07!18.64!TWIST2;;chr12:54447599..54447630,+!p3@HOXC4!1.07!13.12!HOXC4;;chr14:61116183..61116208,-!p1@SIX1!1.06!40.73!SIX1;;chr12:66218420..66218439,+!p12@HMGA2!1.06!10.36!HMGA2;;chr17:41622731..41622764,-!p5@ETV4!1.06!10.36!ETV4;;chr7:27205136..27205164,-!p1@HOXA9!1.06!10.36!HOXA9;;chr9:132427883..132427951,+!p2@PRRX2!1.06!10.36!PRRX2;;chr6:34204973..34204990,+!p4@HMGA1!1.05!136.00!HMGA1;;chr12:26277956..26277980,-!p1@BHLHE41!1.05!37.28!BHLHE41;;chr5:321810..321877,+!p1@AHRR!1.05!33.14!AHRR;;chr2:200323414..200323455,-!p1@SATB2!1.04!21.40!SATB2;;chr17:41623692..41623715,-!p1@ETV4!1.03!42.11!ETV4;;chr16:85932760..85932775,+!p1@IRF8!1.03!9.67!IRF8;;chr11:31832658..31832681,-!p1@PAX6!1.03!9.67!PAX6;;chr2:102091566..102091581,-!p1@RFX8!1.03!9.67!RFX8;;chrX:66763815..66763854,+!p2@AR!1.02!12.43!AR;;chr20:42543506..42543549,+!p2@TOX2!1.01!22.78!TOX2;;chr4:81118647..81118666,+!p1@PRDM8!1.01!12.43!PRDM8;;chr3:21792585..21792625,-!p2@ZNF385D!1.01!10.36!ZNF385D;;chr7:14028488..14028516,-!p2@ETV1!1.01!10.36!ETV1;;chr3:147111198..147111225,+!p4@ZIC1!1.00!8.97!ZIC1;;chr15:67418119..67418162,+!p5@SMAD3!0.98!9.67!SMAD3;;chr11:65686952..65686975,+!p5@DRAP1!0.97!47.63!DRAP1;;chr1:54204818..54204870,-!p@chr1:54204818..54204870,-!0.97!8.97!GLIS1;;chr21:38071430..38071456,+!p1@SIM2!0.97!8.28!SIM2;;chr4:109088940..109089037,-!p4@LEF1!0.97!8.28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|ffid_belonging_in_development=CL:0000134,CL:0000335
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Line 35: Line 41:
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|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/osteosarcoma%2520cell%2520line%253a143B%252fTK%255e%2528-%2529neo%255e%2528R%2529.CNhs11279.10510-107D6.hg19.nobarcode.rdna.fa.gz
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|id=FF:10510-107D6
|id=FF:10510-107D6
|is_a=DOID:3347;;EFO:0002091;;FF:0000003;;FF:0000210;;FF:0100407
|is_a=DOID:3347;;EFO:0002091;;FF:0000210;;FF:0100407
|is_obsolete=
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|library_id_phase_based=2:CNhs11279
|microRNAs=
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|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10510
|name=osteosarcoma cell line:143B/TK^(-)neo^(R)
|name=osteosarcoma cell line:143B/TK^(-)neo^(R)
|namespace=FANTOM5
|namespace=FANTOM5
Line 42: Line 60:
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Line 57: Line 78:
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|sample_category=cell lines
|sample_cell_catalog=RCB0701
|sample_cell_catalog=RCB0701
|sample_cell_line=143B/TK^(-)neo^(R)
|sample_cell_line=143B/TK^(-)neo^(R)
Line 77: Line 99:
|sample_tissue=bone
|sample_tissue=bone
|top_motifs=TFDP1:2.61243444084;PAX8:1.54651124803;FOX{I1,J2}:1.52565362021;EGR1..3:1.40452521392;PDX1:1.32048780396;ONECUT1,2:1.24952583833;TFAP2B:1.21850752979;HBP1_HMGB_SSRP1_UBTF:1.20561602007;EN1,2:1.17279746428;ZFP161:1.14994286983;BREu{core}:1.12270707369;HIC1:1.06466641215;SOX17:1.05108430034;T:1.00065352165;POU6F1:0.998041696548;MTF1:0.980762320965;FOXQ1:0.95080066228;HOXA9_MEIS1:0.900705644236;MTE{core}:0.855021806085;TFAP2{A,C}:0.848819327056;MZF1:0.844545640893;POU5F1:0.805540724275;PRRX1,2:0.787110961838;E2F1..5:0.766902102347;FOX{F1,F2,J1}:0.759327698337;HES1:0.737602526235;XBP1:0.733874420031;GFI1:0.716618124505;LEF1_TCF7_TCF7L1,2:0.681557069593;CDC5L:0.664291967992;MED-1{core}:0.587572281545;FOXA2:0.565525218062;NANOG:0.514569331947;LHX3,4:0.474730215559;PAX6:0.470565551308;FOS_FOS{B,L1}_JUN{B,D}:0.42830734469;ADNP_IRX_SIX_ZHX:0.390122305609;NHLH1,2:0.389810688144;bHLH_family:0.381815642606;POU2F1..3:0.379614506121;BACH2:0.362660135356;GZF1:0.337819324727;AR:0.336408257813;DBP:0.325378376667;GCM1,2:0.310940897121;PAX3,7:0.308455449746;GATA6:0.305534541813;PRDM1:0.296682630215;FOSL2:0.295806274139;HLF:0.285224497973;CRX:0.281569644985;MYB:0.276217951879;PBX1:0.274898214583;TEF:0.270152252562;PATZ1:0.269073707077;GTF2I:0.258710953739;NFIX:0.255237272462;POU1F1:0.244965081719;HOX{A5,B5}:0.235237077363;TFAP4:0.227552544266;CEBPA,B_DDIT3:0.22694370622;HOX{A6,A7,B6,B7}:0.223392687875;ZBTB6:0.202853035656;NR3C1:0.181586281679;NFIL3:0.158119560336;NFE2:0.149391103719;CUX2:0.147421498035;SOX5:0.137423713326;FOX{D1,D2}:0.124706674488;NFY{A,B,C}:0.110476005344;BPTF:0.102929932671;MYOD1:0.101165905194;TLX1..3_NFIC{dimer}:0.0815988331161;NKX6-1,2:0.0792579771948;MYBL2:0.0741448753154;GTF2A1,2:0.0738573539937;VSX1,2:0.0682654754574;XCPE1{core}:0.0644981254361;ZNF143:0.0619869779747;HSF1,2:0.0559528769627;TP53:0.0556479861193;SOX2:0.0498152965566;STAT2,4,6:0.0474708931313;FOXD3:0.039236314605;TBP:0.0278528936175;REST:0.0277716120498;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.025740631831;ZNF148:0.0222943951982;NRF1:0.0222067615367;ATF2:0.0158960116444;GFI1B:0.00917153954737;AHR_ARNT_ARNT2:0.00914633019491;RFX1:-0.0149183802415;SOX{8,9,10}:-0.015063663507;TAL1_TCF{3,4,12}:-0.0185875133885;ELK1,4_GABP{A,B1}:-0.0367671261029;MAZ:-0.0376607973414;ATF5_CREB3:-0.0475225142221;CREB1:-0.0589727295716;MEF2{A,B,C,D}:-0.0756374163199;DMAP1_NCOR{1,2}_SMARC:-0.0797706665336;TBX4,5:-0.0801614321783;ZBTB16:-0.0832490106057;ZNF384:-0.0834432060102;PITX1..3:-0.0881801837177;HNF1A:-0.0910892875756;NFE2L2:-0.0974606635827;NFKB1_REL_RELA:-0.101444022084;RUNX1..3:-0.102288476168;NR5A1,2:-0.107196201278;TEAD1:-0.110234311756;OCT4_SOX2{dimer}:-0.115377762531;PAX5:-0.130306090652;MAFB:-0.151447745922;FOXP1:-0.153623070179;NKX2-1,4:-0.155361300163;ELF1,2,4:-0.157989817789;NKX3-1:-0.160788970599;SP1:-0.201020097013;NR6A1:-0.207336478185;HOX{A4,D4}:-0.210268979897;PAX2:-0.211752079047;SPI1:-0.213297964525;TGIF1:-0.233214466881;ATF4:-0.238530676563;IKZF2:-0.258119146916;ETS1,2:-0.263553798151;PPARG:-0.292558521222;POU3F1..4:-0.300796539669;STAT5{A,B}:-0.311209154748;MYFfamily:-0.313317399013;FOXN1:-0.317418274258;PAX1,9:-0.32385917442;RORA:-0.326425067632;SPIB:-0.328443560018;ATF6:-0.347435118776;ZEB1:-0.351352667701;YY1:-0.357081552721;SMAD1..7,9:-0.363027837675;CDX1,2,4:-0.367806851286;FOXM1:-0.372506415684;SNAI1..3:-0.376714041956;TFCP2:-0.377348600155;IKZF1:-0.380926084916;NKX2-3_NKX2-5:-0.396381753238;KLF4:-0.396759285213;NFE2L1:-0.401720927732;PAX4:-0.41959672471;GATA4:-0.42684497538;HNF4A_NR2F1,2:-0.434501556251;JUN:-0.452607402587;SRF:-0.4550204412;ALX4:-0.477711846671;ZIC1..3:-0.525898831113;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.531219581477;ZNF423:-0.542453536715;RBPJ:-0.544520404657;RREB1:-0.545821637653;NR1H4:-0.556791125502;IRF7:-0.571639251464;ARID5B:-0.58815512017;ALX1:-0.59003150724;FOXL1:-0.595219970222;HMGA1,2:-0.61575537292;NANOG{mouse}:-0.634346145896;ZNF238:-0.640102312298;RFX2..5_RFXANK_RFXAP:-0.643677330407;TOPORS:-0.679518203066;NFATC1..3:-0.680252141192;LMO2:-0.700500462975;EBF1:-0.731406133085;RXR{A,B,G}:-0.741753022296;IRF1,2:-0.74462080034;FOXO1,3,4:-0.753781337725;HIF1A:-0.778227177234;SPZ1:-0.779276205957;EVI1:-0.85114099226;UFEwm:-0.884990126522;GLI1..3:-0.913564090045;TLX2:-0.935766710996;HAND1,2:-1.01101458228;FOXP3:-1.04936858173;NKX3-2:-1.06023147723;AIRE:-1.09447219675;HMX1:-1.10218394332;SREBF1,2:-1.13192848269;NKX2-2,8:-1.18188046285;RXRA_VDR{dimer}:-1.2791086312;ESR1:-1.3356384546;ESRRA:-1.34256959084;EP300:-1.38206006877;STAT1,3:-1.72873299632
|top_motifs=TFDP1:2.61243444084;PAX8:1.54651124803;FOX{I1,J2}:1.52565362021;EGR1..3:1.40452521392;PDX1:1.32048780396;ONECUT1,2:1.24952583833;TFAP2B:1.21850752979;HBP1_HMGB_SSRP1_UBTF:1.20561602007;EN1,2:1.17279746428;ZFP161:1.14994286983;BREu{core}:1.12270707369;HIC1:1.06466641215;SOX17:1.05108430034;T:1.00065352165;POU6F1:0.998041696548;MTF1:0.980762320965;FOXQ1:0.95080066228;HOXA9_MEIS1:0.900705644236;MTE{core}:0.855021806085;TFAP2{A,C}:0.848819327056;MZF1:0.844545640893;POU5F1:0.805540724275;PRRX1,2:0.787110961838;E2F1..5:0.766902102347;FOX{F1,F2,J1}:0.759327698337;HES1:0.737602526235;XBP1:0.733874420031;GFI1:0.716618124505;LEF1_TCF7_TCF7L1,2:0.681557069593;CDC5L:0.664291967992;MED-1{core}:0.587572281545;FOXA2:0.565525218062;NANOG:0.514569331947;LHX3,4:0.474730215559;PAX6:0.470565551308;FOS_FOS{B,L1}_JUN{B,D}:0.42830734469;ADNP_IRX_SIX_ZHX:0.390122305609;NHLH1,2:0.389810688144;bHLH_family:0.381815642606;POU2F1..3:0.379614506121;BACH2:0.362660135356;GZF1:0.337819324727;AR:0.336408257813;DBP:0.325378376667;GCM1,2:0.310940897121;PAX3,7:0.308455449746;GATA6:0.305534541813;PRDM1:0.296682630215;FOSL2:0.295806274139;HLF:0.285224497973;CRX:0.281569644985;MYB:0.276217951879;PBX1:0.274898214583;TEF:0.270152252562;PATZ1:0.269073707077;GTF2I:0.258710953739;NFIX:0.255237272462;POU1F1:0.244965081719;HOX{A5,B5}:0.235237077363;TFAP4:0.227552544266;CEBPA,B_DDIT3:0.22694370622;HOX{A6,A7,B6,B7}:0.223392687875;ZBTB6:0.202853035656;NR3C1:0.181586281679;NFIL3:0.158119560336;NFE2:0.149391103719;CUX2:0.147421498035;SOX5:0.137423713326;FOX{D1,D2}:0.124706674488;NFY{A,B,C}:0.110476005344;BPTF:0.102929932671;MYOD1:0.101165905194;TLX1..3_NFIC{dimer}:0.0815988331161;NKX6-1,2:0.0792579771948;MYBL2:0.0741448753154;GTF2A1,2:0.0738573539937;VSX1,2:0.0682654754574;XCPE1{core}:0.0644981254361;ZNF143:0.0619869779747;HSF1,2:0.0559528769627;TP53:0.0556479861193;SOX2:0.0498152965566;STAT2,4,6:0.0474708931313;FOXD3:0.039236314605;TBP:0.0278528936175;REST:0.0277716120498;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.025740631831;ZNF148:0.0222943951982;NRF1:0.0222067615367;ATF2:0.0158960116444;GFI1B:0.00917153954737;AHR_ARNT_ARNT2:0.00914633019491;RFX1:-0.0149183802415;SOX{8,9,10}:-0.015063663507;TAL1_TCF{3,4,12}:-0.0185875133885;ELK1,4_GABP{A,B1}:-0.0367671261029;MAZ:-0.0376607973414;ATF5_CREB3:-0.0475225142221;CREB1:-0.0589727295716;MEF2{A,B,C,D}:-0.0756374163199;DMAP1_NCOR{1,2}_SMARC:-0.0797706665336;TBX4,5:-0.0801614321783;ZBTB16:-0.0832490106057;ZNF384:-0.0834432060102;PITX1..3:-0.0881801837177;HNF1A:-0.0910892875756;NFE2L2:-0.0974606635827;NFKB1_REL_RELA:-0.101444022084;RUNX1..3:-0.102288476168;NR5A1,2:-0.107196201278;TEAD1:-0.110234311756;OCT4_SOX2{dimer}:-0.115377762531;PAX5:-0.130306090652;MAFB:-0.151447745922;FOXP1:-0.153623070179;NKX2-1,4:-0.155361300163;ELF1,2,4:-0.157989817789;NKX3-1:-0.160788970599;SP1:-0.201020097013;NR6A1:-0.207336478185;HOX{A4,D4}:-0.210268979897;PAX2:-0.211752079047;SPI1:-0.213297964525;TGIF1:-0.233214466881;ATF4:-0.238530676563;IKZF2:-0.258119146916;ETS1,2:-0.263553798151;PPARG:-0.292558521222;POU3F1..4:-0.300796539669;STAT5{A,B}:-0.311209154748;MYFfamily:-0.313317399013;FOXN1:-0.317418274258;PAX1,9:-0.32385917442;RORA:-0.326425067632;SPIB:-0.328443560018;ATF6:-0.347435118776;ZEB1:-0.351352667701;YY1:-0.357081552721;SMAD1..7,9:-0.363027837675;CDX1,2,4:-0.367806851286;FOXM1:-0.372506415684;SNAI1..3:-0.376714041956;TFCP2:-0.377348600155;IKZF1:-0.380926084916;NKX2-3_NKX2-5:-0.396381753238;KLF4:-0.396759285213;NFE2L1:-0.401720927732;PAX4:-0.41959672471;GATA4:-0.42684497538;HNF4A_NR2F1,2:-0.434501556251;JUN:-0.452607402587;SRF:-0.4550204412;ALX4:-0.477711846671;ZIC1..3:-0.525898831113;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.531219581477;ZNF423:-0.542453536715;RBPJ:-0.544520404657;RREB1:-0.545821637653;NR1H4:-0.556791125502;IRF7:-0.571639251464;ARID5B:-0.58815512017;ALX1:-0.59003150724;FOXL1:-0.595219970222;HMGA1,2:-0.61575537292;NANOG{mouse}:-0.634346145896;ZNF238:-0.640102312298;RFX2..5_RFXANK_RFXAP:-0.643677330407;TOPORS:-0.679518203066;NFATC1..3:-0.680252141192;LMO2:-0.700500462975;EBF1:-0.731406133085;RXR{A,B,G}:-0.741753022296;IRF1,2:-0.74462080034;FOXO1,3,4:-0.753781337725;HIF1A:-0.778227177234;SPZ1:-0.779276205957;EVI1:-0.85114099226;UFEwm:-0.884990126522;GLI1..3:-0.913564090045;TLX2:-0.935766710996;HAND1,2:-1.01101458228;FOXP3:-1.04936858173;NKX3-2:-1.06023147723;AIRE:-1.09447219675;HMX1:-1.10218394332;SREBF1,2:-1.13192848269;NKX2-2,8:-1.18188046285;RXRA_VDR{dimer}:-1.2791086312;ESR1:-1.3356384546;ESRRA:-1.34256959084;EP300:-1.38206006877;STAT1,3:-1.72873299632
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10510-107D6;search_select_hide=table117:FF:10510-107D6
}}
}}

Latest revision as of 14:27, 3 June 2020

Name:osteosarcoma cell line:143B/TK^(-)neo^(R)
Species:Human (Homo sapiens)
Library ID:CNhs11279
Sample type:cell lines
Genomic View: UCSC
RefEX:Specific genes
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuebone
dev stageNA
sexunknown
ageNA
cell typeosteoblast
cell line143B/TK^(-)neo^(R)
companyRIKEN Bioresource centre
collaborationYukio Nakamura (RIKEN BRC)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004684
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11279 CAGE DRX007977 DRR008849
Accession ID Hg19

Library idBAMCTSS
CNhs11279 DRZ000274 DRZ001659
Accession ID Hg38

Library idBAMCTSS
CNhs11279 DRZ011624 DRZ013009
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0861
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma0.351
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.07
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.115
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.071
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0775
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus0.162
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8-0.0563
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small0.3
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11279

Jaspar motifP-value
MA0002.20.0698
MA0003.10.255
MA0004.10.952
MA0006.10.82
MA0007.10.63
MA0009.10.966
MA0014.10.744
MA0017.10.0328
MA0018.20.759
MA0019.10.824
MA0024.17.31406e-4
MA0025.10.0864
MA0027.10.85
MA0028.10.776
MA0029.10.412
MA0030.10.014
MA0031.10.0178
MA0035.20.138
MA0038.10.0474
MA0039.20.243
MA0040.10.662
MA0041.10.167
MA0042.10.142
MA0043.10.326
MA0046.10.0806
MA0047.20.0169
MA0048.10.746
MA0050.10.0155
MA0051.10.608
MA0052.10.941
MA0055.10.706
MA0057.10.873
MA0058.10.313
MA0059.10.591
MA0060.10.00158
MA0061.10.143
MA0062.20.2
MA0065.20.00197
MA0066.10.0192
MA0067.10.841
MA0068.10.0622
MA0069.10.0916
MA0070.10.096
MA0071.10.22
MA0072.10.898
MA0073.10.78
MA0074.10.469
MA0076.10.645
MA0077.10.549
MA0078.10.364
MA0079.20.697
MA0080.20.0545
MA0081.10.304
MA0083.10.665
MA0084.10.682
MA0087.10.754
MA0088.10.164
MA0090.10.695
MA0091.10.065
MA0092.10.155
MA0093.10.854
MA0099.21.20827e-12
MA0100.10.673
MA0101.10.872
MA0102.20.761
MA0103.10.104
MA0104.20.709
MA0105.10.00115
MA0106.10.488
MA0107.10.887
MA0108.28.88636e-4
MA0111.10.374
MA0112.21.95924e-4
MA0113.10.119
MA0114.10.0381
MA0115.10.438
MA0116.10.00281
MA0117.10.809
MA0119.10.194
MA0122.10.222
MA0124.10.827
MA0125.10.937
MA0131.10.72
MA0135.10.148
MA0136.10.259
MA0137.20.122
MA0138.20.235
MA0139.10.102
MA0140.10.507
MA0141.10.255
MA0142.10.498
MA0143.10.445
MA0144.10.132
MA0145.10.192
MA0146.10.0109
MA0147.10.929
MA0148.10.0149
MA0149.10.331
MA0150.10.874
MA0152.10.357
MA0153.10.689
MA0154.10.0101
MA0155.10.201
MA0156.10.704
MA0157.10.391
MA0159.10.0423
MA0160.10.333
MA0162.10.27
MA0163.12.87642e-4
MA0164.10.71
MA0258.10.00206
MA0259.10.894



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11279

Novel motifP-value
10.00934
100.099
1000.527
1010.93
1020.964
1030.0778
1040.896
1050.897
1060.365
1070.542
1080.536
1090.106
110.0122
1100.0918
1110.398
1120.00901
1130.574
1140.0108
1150.204
1160.0792
1170.0681
1180.0481
1190.0381
120.834
1200.744
1210.94
1220.583
1230.436
1240.448
1250.319
1260.607
1270.283
1280.578
1290.346
130.164
1300.103
1310.104
1320.345
1330.87
1340.459
1350.838
1360.721
1370.692
1380.629
1390.0119
140.381
1400.253
1410.278
1420.653
1430.96
1440.391
1450.888
1460.886
1470.957
1480.0278
1490.044
150.623
1500.84
1510.47
1520.639
1530.602
1540.926
1550.0303
1560.861
1570.229
1580.814
1590.784
160.0776
1600.352
1610.439
1620.881
1630.753
1640.148
1650.589
1660.064
1670.28
1680.686
1690.0158
170.244
180.787
190.188
20.626
200.728
210.556
220.091
230.981
240.598
250.56
260.25
270.164
280.967
290.0808
30.0449
300.829
310.389
323.3313e-5
330.16
340.937
350.623
360.0285
370.0618
380.201
390.633
40.288
400.0243
410.533
420.724
430.117
440.00151
450.993
460.146
470.0335
480.104
490.184
50.609
500.861
510.551
520.666
530.54
540.681
550.974
560.305
570.624
580.361
590.124
60.549
600.269
610.588
620.365
630.219
640.0898
650.207
660.0565
670.794
680.577
690.471
70.384
703.30304e-4
710.0246
720.111
730.171
740.608
750.13
760.378
770.0442
780.655
790.0264
80.126
800.899
810.314
820.00322
830.404
840.275
850.0141
860.641
870.85
880.926
890.00808
90.77
900.966
910.443
920.0778
930.971
940.34
950.053
960.0695
970.316
980.234
990.579



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11279


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000055 (non-terminally differentiated cell)
0000003 (native cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
0000062 (osteoblast)

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
201 (connective tissue cancer)
0060100 (musculoskeletal system cancer)
3347 (osteosarcoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0001474 (bone element)
0002384 (connective tissue)
0000479 (tissue)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0004765 (skeletal element)
0002204 (musculoskeletal system)
0001434 (skeletal system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100385 (bone cancer cell line sample)
0100407 (osteosarcoma cell line sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
CL:0000335 (mesenchyme condensation cell)

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