FF:10539-107G8: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005629 | |||
|accession_numbers=CAGE;DRX007961;DRR008833;DRZ000258;DRZ001643;DRZ011608;DRZ012993 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000013,UBERON:0004121,UBERON:0011216,UBERON:0002410,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0000010,UBERON:0001016 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000013,UBERON:0004121,UBERON:0011216,UBERON:0002410,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0000010,UBERON:0001016 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000333,CL:0000003,CL:0000548,CL:0002321,CL:0000219,CL:0000255 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000333,CL:0000003,CL:0000548,CL:0002321,CL:0000219,CL:0000255 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr4:174451370..174451387,-!p1@HAND2!2.97!934.63!HAND2;;chr11:71955210..71955227,-!p1@PHOX2A!2.70!496.43!PHOX2A;;chr2:16080659..16080685,+!p1@MYCN!2.59!390.97!MYCN;;chr12:103351444..103351461,+!p1@ASCL1!2.35!222.87!ASCL1;;chr7:96654133..96654150,-!p1@DLX5!2.30!196.78!DLX5;;chr4:174451350..174451363,-!p3@HAND2!2.18!150.42!HAND2;;chr1:151032922..151032951,+!p2@MLLT11!2.08!195.27!MLLT11;;chr10:8096631..8096660,+!p1@GATA3!2.05!132.19!GATA3;;chr2:16080635..16080650,+!p4@MYCN!2.05!110.74!MYCN;;chr1:151032860..151032918,+!p1@MLLT11!1.98!1056.79!MLLT11;;chr9:77112244..77112262,+!p1@RORB!1.93!92.94!RORB;;chr4:41750731..41750748,-!p1@PHOX2B!1.82!65.13!PHOX2B;;chr2:16080823..16080836,+!p5@MYCN!1.80!61.46!MYCN;;chr2:27805880..27805967,+!p1@ZNF512!1.79!784.32!ZNF512;;chr10:8096772..8096787,+!p2@GATA3!1.76!66.42!GATA3;;chr2:74741569..74741620,+!p1@TLX2!1.71!49.82!TLX2;;chr1:170632477..170632506,+!p6@PRRX1!1.68!46.80!PRRX1;;chr4:174450089..174450153,-!p2@HAND2!1.66!44.75!HAND2;;chr6:44355325..44355340,+!p4@CDC5L!1.57!42.16!CDC5L;;chr2:176969228..176969260,+!p1@HOXD11!1.57!36.44!HOXD11;;chr2:16081912..16081931,+!p2@MYCN!1.57!36.23!MYCN;;chr2:166326200..166326216,+!p1@CSRNP3!1.54!48.52!CSRNP3;;chr13:72441315..72441454,-!p1@DACH1!1.50!59.63!DACH1;;chr7:96635178..96635181,+!p1@DLX6!1.50!30.62!DLX6;;chr3:18486354..18486377,-!p2@SATB1!1.49!36.77!SATB1;;chr2:27805866..27805879,+!p2@ZNF512!1.48!42.91!ZNF512;;chr17:59477233..59477263,+!p1@TBX2!1.47!85.51!TBX2;;chr1:216896780..216896800,-!p2@ESRRG!1.47!28.68!ESRRG;;chr2:172967621..172967637,-!p1@DLX2!1.45!71.81!DLX2;;chr2:172950227..172950249,+!p2@DLX1!1.43!25.77!DLX1;;chr7:96634878..96634900,+!p2@DLX6!1.42!25.12!DLX6;;chr13:37494365..37494381,-!p1@SMAD9!1.40!41.19!SMAD9;;chr12:114843940..114843955,-!p2@TBX5!1.40!24.37!TBX5;;chr10:131762504..131762555,-!p1@EBF3!1.39!23.51!EBF3;;chr1:216896752..216896778,-!p1@ESRRG!1.38!23.07!ESRRG;;chr13:72441074..72441172,-!p2@DACH1!1.38!22.97!DACH1;;chr3:147127142..147127168,+!p1@ZIC1!1.38!22.86!ZIC1;;chr10:8095593..8095625,+!p3@GATA3!1.35!25.23!GATA3;;chr2:5832508..5832524,+!p1@SOX11!1.35!21.35!SOX11;;chr22:19748231..19748317,+!p1@TBX1!1.34!20.81!TBX1;;chr3:147127177..147127194,+!p2@ZIC1!1.31!19.41!ZIC1;;chr2:172949484..172949522,+!p1@DLX1!1.30!18.76!DLX1;;chr2:16082155..16082169,+!p3@MYCN!1.29!18.55!MYCN;;chr21:47063625..47063658,+!p1@PCBP3!1.28!78.17!PCBP3;;chr8:80679993..80680011,-!p1@HEY1!1.28!25.88!HEY1;;chr1:151032957..151032968,+!p7@MLLT11!1.28!18.11!MLLT11;;chr3:147111231..147111281,+!p3@ZIC1!1.27!17.58!ZIC1;;chr2:176969179..176969226,+!p2@HOXD11!1.26!17.25!HOXD11;;chr7:63505799..63505904,+!p1@ZNF727!1.26!17.14!ZNF727;;chr2:176972000..176972025,+!p4@HOXD11!1.25!16.82!HOXD11;;chr7:96634908..96634923,+!p4@DLX6!1.24!16.50!DLX6;;chr5:134369905..134369972,-!p1@PITX1!1.23!24.69!PITX1;;chr2:185463247..185463263,+!p1@ZNF804A!1.22!27.71!ZNF804A;;chr5:50679228..50679288,+!p1@ISL1!1.22!15.53!ISL1;;chr2:172967242..172967265,-!p2@DLX2!1.22!15.42!DLX2;;chr1:197886461..197886558,+!p1@LHX9!1.20!14.77!LHX9;;chr11:63684602..63684664,-!p1@RCOR2!1.18!27.71!RCOR2;;chr19:38720294..38720348,-!p1@DPF1!1.18!17.79!DPF1;;chr12:115122318..115122331,-!p2@TBX3!1.17!13.91!TBX3;;chr2:219849897..219849928,-!p2@FEV!1.17!13.80!FEV;;chr7:27196267..27196311,-!p1@HOXA7!1.16!13.48!HOXA7;;chr2:219849012..219849065,-!p1@FEV!1.16!13.37!FEV;;chr6:44233252..44233296,-!p1@NFKBIE!1.15!129.28!NFKBIE;;chr12:114845810..114845824,-!p1@TBX5!1.14!12.72!TBX5;;chr12:115121962..115121987,-!p1@TBX3!1.13!104.37!TBX3;;chr1:158975744..158975769,+!p10@IFI16!1.13!12.51!IFI16;;chr9:77112225..77112238,+!p2@RORB!1.13!12.40!RORB;;chr17:70117153..70117174,+!p1@SOX9!1.12!123.57!SOX9;;chrX:84499081..84499115,+!p2@ZNF711!1.10!17.25!ZNF711;;chr19:13134772..13134822,+!p2@NFIX!1.10!17.04!NFIX;;chr17:38465441..38465481,+!p6@RARA!1.10!14.23!RARA;;chr6:44355499..44355514,+!p3@CDC5L!1.10!12.72!CDC5L;;chr20:42295713..42295738,+!p2@MYBL2!1.09!66.85!MYBL2;;chr7:138666053..138666146,-!p1@KIAA1549!1.09!46.80!KIAA1549;;chr1:170633348..170633399,+!p2@PRRX1!1.09!15.31!PRRX1;;chr2:27805971..27805981,+!p3@ZNF512!1.09!12.94!ZNF512;;chr2:74726710..74726736,-!p3@LBX2!1.09!11.32!LBX2;;chr12:85673977..85674015,+!p1@ALX1!1.09!11.32!ALX1;;chr12:103352277..103352324,+!p2@ASCL1!1.09!11.21!ASCL1;;chr18:52989031..52989079,-!p2@TCF4!1.08!25.88!TCF4;;chr7:35293685..35293718,-!p1@TBX20!1.08!11.11!TBX20;;chr5:172662197..172662216,-!p1@NKX2-5!1.08!10.89!NKX2-5;;chr3:141151009..141151033,+!p10@ZBTB38!1.08!10.89!ZBTB38;;chr2:95963052..95963106,+!p1@KCNIP3!1.07!10.67!KCNIP3;;chr20:51588873..51588953,+!p1@TSHZ2!1.06!14.02!TSHZ2;;chr8:80680024..80680046,-!p2@HEY1!1.06!11.86!HEY1;;chr4:41750839..41750850,-!p2@PHOX2B!1.06!10.35!PHOX2B;;chr1:158979686..158979745,+!p1@IFI16!1.05!339.54!IFI16;;chr1:151032833..151032850,+!p3@MLLT11!1.04!22.97!MLLT11;;chr11:31832658..31832681,-!p1@PAX6!1.04!10.03!PAX6;;chr2:16082395..16082415,+!p6@MYCN!1.04!9.92!MYCN;;chr20:20348740..20348757,+!p1@INSM1!1.03!9.60!INSM1;;chr9:126773880..126773895,+!p2@LHX2!1.02!9.49!LHX2;;chr7:28448965..28448994,+!p2@CREB5!1.00!32.02!CREB5;;chr2:74741642..74741658,+!p2@TLX2!1.00!9.06!TLX2;;chr6:44355257..44355315,+!p2@CDC5L!0.99!40.76!CDC5L;;chr3:44626446..44626477,+!p1@ZNF660!0.99!16.17!ZNF660;;chr5:174151553..174151610,+!p1@MSX2!0.99!14.66!MSX2;;chr7:96654026..96654061,-!p2@DLX5!0.99!8.84!DLX5;;chr8:11561684..11561751,+!p1@GATA4!0.99!8.84!GATA4;;chr2:166428839..166428859,+!p2@CSRNP3!0.99!8.73!CSRNP3;;chr1:153940354..153940395,+!p1@CREB3L4!0.98!35.15!CREB3L4;;chr3:40547564..40547616,+!p1@ZNF620!0.98!12.18!ZNF620;;chr7:96634850..96634874,+!p3@DLX6!0.98!8.63!DLX6;;chr1:216896801..216896812,-!p5@ESRRG!0.98!8.63!ESRRG;;chr2:172967276..172967296,-!p3@DLX2!0.98!8.52!DLX2;;chr12:115121770..115121781,-!p4@TBX3!0.98!8.52!TBX3;;chr6:126112074..126112144,+!p1@NCOA7!0.96!111.17!NCOA7;;chr7:27190547..27190591,-!p1@HOXA6!0.96!8.19!HOXA6;;chr15:80696703..80696754,+!p1@ARNT2!0.95!10.67!ARNT2;;chr17:59477275..59477286,+!p3@TBX2!0.95!10.67!TBX2;;chrX:84498989..84499003,+!p1@ZNF711!0.94!10.57!ZNF711;;chr2:25475120..25475176,-!p2@DNMT3A!0.94!10.57!DNMT3A;;chr6:44355478..44355489,+!p5@CDC5L!0.94!8.52!CDC5L;;chr2:219849805..219849819,-!p3@FEV!0.94!7.76!FEV;;chr3:147111198..147111225,+!p4@ZIC1!0.94!7.76!ZIC1;;chr4:41750922..41750939,-!p4@PHOX2B!0.94!7.76!PHOX2B;;chr12:54779511..54779577,-!p5@ZNF385A!0.94!7.66!ZNF385A;;chr7:28220198..28220269,-!p2@JAZF1!0.93!69.55!JAZF1;;chr18:55102598..55102623,+!p1@ONECUT2!0.93!7.44!ONECUT2;;chr1:164528616..164528660,+!p5@PBX1!0.92!15.53!PBX1;;chr2:2334997..2335053,-!p1@MYT1L!0.92!7.22!MYT1L;;chr15:41913690..41913753,+!p2@MGA!0.91!17.79!MGA;;chr9:124976328..124976372,-!p2@LHX6!0.91!7.12!LHX6;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!0.89!67.71!ZNF595;;chr5:174151612..174151633,+!p2@MSX2!0.89!6.79!MSX2;;chr2:16082094..16082106,+!p7@MYCN!0.89!6.69!MYCN;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!0.88!14.77!SOHLH2;;chr15:76629123..76629151,+!p1@ISL2!0.87!7.12!ISL2;;chr1:170632959..170632987,+!p4@PRRX1!0.87!7.01!PRRX1;;chr1:170632439..170632465,+!p11@PRRX1!0.87!6.47!PRRX1;;chr2:119604456..119604501,-!p2@EN1!0.87!6.47!EN1;;chr7:96635277..96635301,+!p7@DLX6!0.87!6.36!DLX6;;chr17:41623692..41623715,-!p1@ETV4!0.86!28.36!ETV4;;chr5:176738887..176738934,-!p1@MXD3!0.85!43.67!MXD3;;chr7:19157043..19157088,-!p2@TWIST1!0.85!15.85!TWIST1;;chr5:158526917..158526932,-!p1@EBF1!0.85!15.74!EBF1;;chr4:206390..206444,+!p1@ZNF876P!0.85!11.32!ZNF876P;;chr17:59477197..59477212,+!p2@TBX2!0.85!10.89!TBX2;;chr10:114886551..114886601,+!p11@TCF7L2!0.85!6.15!TCF7L2;;chr10:124895472..124895508,+!p1@HMX3!0.85!6.15!HMX3;;chr13:37494248..37494260,-!p3@SMAD9!0.85!6.15!SMAD9;;chr2:176981499..176981522,+!p2@HOXD10!0.85!6.15!HOXD10;;chr5:178368186..178368238,+!p1@ZNF454!0.84!11.11!ZNF454;;chr9:14313893..14313908,-!p7@NFIB!0.84!8.73!NFIB;;chr18:55102628..55102646,+!p2@ONECUT2!0.84!5.93!ONECUT2;;chr17:38465413..38465438,+!p5@RARA!0.83!9.38!RARA;;chr1:164528588..164528610,+!p8@PBX1!0.83!9.06!PBX1;;chr2:172967323..172967336,-!p4@DLX2!0.83!5.82!DLX2;;chr12:115121802..115121814,-!p5@TBX3!0.83!5.82!TBX3;;chr13:79177703..79177729,-!p2@POU4F1!0.83!5.82!POU4F1;;chr13:37494275..37494304,-!p2@SMAD9!0.83!5.71!SMAD9;;chr2:172967353..172967365,-!p5@DLX2!0.83!5.71!DLX2;;chr2:176973498..176973524,+!p1@HOXD10!0.83!5.71!HOXD10;;chr2:60780607..60780624,-!p2@BCL11A!0.82!18.44!BCL11A;;chr19:22817119..22817145,+!p1@ZNF492!0.82!9.70!ZNF492;;chr2:5832493..5832507,+!p2@SOX11!0.82!5.61!SOX11;;chr9:14314131..14314147,-!p2@NFIB!0.81!32.89!NFIB;;chr2:176969097..176969109,+!p3@HOXD11!0.81!5.50!HOXD11;;chr2:176994408..176994492,+!p1@HOXD8!0.81!5.50!HOXD8;;chr13:37494306..37494324,-!p4@SMAD9!0.81!5.50!SMAD9;;chr8:77593448..77593471,+!p2@ZFHX4!0.81!5.50!ZFHX4;;chr16:67063211..67063240,+!p2@CBFB!0.80!27.71!CBFB;;chr5:124082322..124082364,-!p1@ZNF608!0.80!14.34!ZNF608;;chr1:247171316..247171336,-!p3@ZNF695!0.80!8.30!ZNF695;;chr6:126111875..126111886,+!p10@NCOA7!0.80!5.28!NCOA7;;chr20:42295745..42295765,+!p1@MYBL2!0.79!92.94!MYBL2;;chr2:71127699..71127744,+!p1@VAX2!0.79!11.11!VAX2;;chr2:176969124..176969155,+!p5@HOXD11!0.79!5.18!HOXD11;;chr2:176973275..176973300,+!p4@HOXD10!0.79!5.18!HOXD10;;chr7:96635448..96635470,+!p5@DLX6!0.79!5.18!DLX6;;chr17:59477403..59477414,+!p4@TBX2!0.79!5.18!TBX2;;chr14:21994337..21994442,-!p1@SALL2!0.78!14.88!SALL2;;chr6:10412392..10412409,-!p4@TFAP2A!0.78!5.82!TFAP2A;;chr12:115122303..115122314,-!p6@TBX3!0.78!5.07!TBX3;;chr12:2986206..2986258,-!p2@FOXM1!0.77!32.35!FOXM1;;chr1:151431647..151431669,-!p2@POGZ!0.77!26.31!POGZ;;chr9:109625401..109625458,+!p1@ZNF462!0.77!13.69!ZNF462;;chr1:164528297..164528309,+!p9@PBX1!0.77!6.58!PBX1;;chr6:126112039..126112062,+!p8@NCOA7!0.77!6.04!NCOA7;;chr2:16082418..16082429,+!p8@MYCN!0.77!4.85!MYCN;;chr2:208030647..208030689,-!p1@KLF7!0.76!43.99!KLF7;;chr8:77593474..77593612,+!p1@ZFHX4!0.76!21.78!ZFHX4;;chr1:247171347..247171366,-!p2@ZNF695!0.76!9.27!ZNF695;;chr17:41622765..41622821,-!p2@ETV4!0.76!7.66!ETV4;;chr17:41277372..41277418,-!p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r15:53083268..53083283,-!p5@ONECUT1!0.29!0.97!ONECUT1;;chr16:67197334..67197362,+!p8@HSF4!0.29!0.97!HSF4;;chr17:48046543..48046575,+!p2@DLX4!0.29!0.97!DLX4;;chr19:24216347..24216356,+!p7@ZNF254!0.29!0.97!ZNF254;;chr22:42739839..42739867,-!p1@ENST00000515426!0.29!0.97!TCF20;;chr2:176994919..176994931,+!p2@HOXD8!0.29!0.97!HOXD8;;chr2:200320768..200320800,-!p4@SATB2!0.29!0.97!SATB2;;chr2:219850277..219850288,-!p9@FEV!0.29!0.97!FEV;;chr2:66662697..66662711,+!p8@MEIS1!0.29!0.97!MEIS1;;chr4:41750057..41750078,-!p3@PHOX2B!0.29!0.97!PHOX2B;;chr4:467892..467963,-!p1@ABCA11P,p1@ZNF721!0.28!43.67!ZNF721;;chr7:99679324..99679368,-!p1@ZNF3!0.28!23.61!ZNF3;;chr16:3355472..3355514,+!p1@ZNF75A!0.28!23.51!ZNF75A;;chr9:125675576..125675612,-!p1@ZBTB6!0.28!21.13!ZBTB6;;chr1:200379129..200379174,-!p1@ZNF281!0.28!20.27!ZNF281;;chr19:20278012..20278034,+!p1@ZNF486!0.28!14.02!ZNF486;;chr11:129765427..129765492,-!p1@NFRKB!0.28!13.26!NFRKB;;chr7:64126503..64126528,+!p1@ZNF107!0.28!11.65!ZNF107;;chr12:6798616..6798684,-!p2@ZNF384!0.28!11.21!ZNF384;;chr3:52719888..52719908,-!p2@PBRM1!0.28!7.55!PBRM1;;chr9:125693757..125693818,-!p1@ZBTB26!0.28!6.90!ZBTB26;;chr12:6798056..6798102,-!p3@ZNF384!0.28!4.42!ZNF384;;chr10:38146510..38146576,-!p1@ZNF248!0.28!4.21!ZNF248;;chr12:133613937..133613994,+!p2@ZNF84!0.28!3.34!ZNF84;;chr7:102985288..102985310,-!p2@DNAJC2!0.28!3.34!DNAJC2;;chr19:44037546..44037594,+!p1@ZNF575!0.28!2.80!ZNF575;;chr16:29818132..29818144,+!p12@MAZ!0.28!2.70!MAZ;;chr13:115079801..115079832,+!p2@CHAMP1!0.28!2.16!CHAMP1;;chr8:60031762..60031803,-!p3@TOX!0.28!1.73!TOX;;chr10:43134047..43134079,-!p3@ZNF33B!0.28!1.62!ZNF33B;;chr17:42299455..42299485,-!p12@UBTF!0.28!1.62!UBTF;;chr16:29817199..29817222,+!p17@MAZ!0.28!1.40!MAZ;;chr1:78444738..78444773,-!p1@FUBP1!0.27!181.68!FUBP1;;chr5:137801160..137801176,+!p1@EGR1!0.27!169.28!EGR1;;chr22:42229100..42229146,+!p1@SREBF2!0.27!167.56!SREBF2;;chr15:57025675..57025718,-!p1@ZNF280D!0.27!35.37!ZNF280D;;chr6:155635583..155635644,-!p1@TFB1M!0.27!21.35!TFB1M;;chr4:95128999..95129056,+!p2@SMARCAD1!0.27!17.25!SMARCAD1;;chr19:53400852..53400962,-!p1@ZNF320!0.27!16.39!ZNF320;;chr1:246729483..246729538,-!p2@TFB2M!0.27!15.63!TFB2M;;chr16:29819403..29819442,+!p5@MAZ!0.27!13.15!MAZ;;chr1:167190091..167190156,+!p1@POU2F1!0.27!12.83!POU2F1;;chr12:133532864..133532899,-!p1@ZNF605!0.27!11.86!ZNF605;;chr7:99070499..99070523,+!p1@ZNF789!0.27!8.30!ZNF789;;chr9:32552577..32552627,-!p1@TOPORS!0.27!8.09!TOPORS;;chrX:131623044..131623089,-!p1@MBNL3!0.27!6.25!MBNL3;;chr7:99156314..99156372,+!p4@ZNF655!0.27!4.85!ZNF655;;chr1:161736140..161736151,+!p3@ATF6!0.27!4.53!ATF6;;chr7:150945754..150945789,-!p2@SMARCD3!0.27!4.42!SMARCD3;;chr19:44809143..44809187,-!p1@ZNF235!0.27!4.31!ZNF235;;chr16:29819446..29819471,+!p9@MAZ!0.27!4.31!MAZ;;chr19:36134528..36134563,+!p1@ETV2!0.27!4.10!ETV2;;chr19:37958285..37958317,-!p3@ZNF569!0.27!3.67!ZNF569;;chrX:153363188..153363203,-!p2@MECP2!0.27!3.23!MECP2;;chr4:121843844..121843904,-!p1@PRDM5!0.27!3.23!PRDM5;;chr4:87928307..87928321,+!p8@AFF1!0.27!3.02!AFF1;;chr5:178157700..178157734,-!p3@ZNF354A!0.27!2.70!ZNF354A;;chr8:116681150..116681164,-!p5@TRPS1!0.27!2.48!TRPS1;;chr9:2017420..2017433,+!p6@SMARCA2!0.27!2.48!SMARCA2;;chr14:24020938..24020988,-!p1@ZFHX2!0.27!1.62!ZFHX2;;chr18:53257068..53257086,-!p12@TCF4!0.27!1.51!TCF4;;chr11:12696071..12696086,+!p3@TEAD1!0.27!1.40!TEAD1;;chr19:35417939..35417963,+!p3@ZNF30!0.27!1.29!ZNF30;;chr19:48774586..48774670,+!p1@ZNF114!0.27!1.29!ZNF114;;chr15:37392593..37392607,-!p13@MEIS2!0.27!1.19!MEIS2;;chr1:61548118..61548129,+!p9@NFIA!0.27!1.08!NFIA;;chr4:146860163..146860188,-!p5@ZNF827!0.27!1.08!ZNF827;;chr2:119605374..119605377,-!p7@EN1!0.27!0.86!EN1;;chr2:176972082..176972096,+!p8@HOXD11!0.27!0.86!HOXD11;;chr2:176987485..176987496,+!p3@HOXD9!0.27!0.86!HOXD9;; | |expression_enrichment_score=chr4:174451370..174451387,-!p1@HAND2!2.97!934.63!HAND2;;chr11:71955210..71955227,-!p1@PHOX2A!2.70!496.43!PHOX2A;;chr2:16080659..16080685,+!p1@MYCN!2.59!390.97!MYCN;;chr12:103351444..103351461,+!p1@ASCL1!2.35!222.87!ASCL1;;chr7:96654133..96654150,-!p1@DLX5!2.30!196.78!DLX5;;chr4:174451350..174451363,-!p3@HAND2!2.18!150.42!HAND2;;chr1:151032922..151032951,+!p2@MLLT11!2.08!195.27!MLLT11;;chr10:8096631..8096660,+!p1@GATA3!2.05!132.19!GATA3;;chr2:16080635..16080650,+!p4@MYCN!2.05!110.74!MYCN;;chr1:151032860..151032918,+!p1@MLLT11!1.98!1056.79!MLLT11;;chr9:77112244..77112262,+!p1@RORB!1.93!92.94!RORB;;chr4:41750731..41750748,-!p1@PHOX2B!1.82!65.13!PHOX2B;;chr2:16080823..16080836,+!p5@MYCN!1.80!61.46!MYCN;;chr2:27805880..27805967,+!p1@ZNF512!1.79!784.32!ZNF512;;chr10:8096772..8096787,+!p2@GATA3!1.76!66.42!GATA3;;chr2:74741569..74741620,+!p1@TLX2!1.71!49.82!TLX2;;chr1:170632477..170632506,+!p6@PRRX1!1.68!46.80!PRRX1;;chr4:174450089..174450153,-!p2@HAND2!1.66!44.75!HAND2;;chr6:44355325..44355340,+!p4@CDC5L!1.57!42.16!CDC5L;;chr2:176969228..176969260,+!p1@HOXD11!1.57!36.44!HOXD11;;chr2:16081912..16081931,+!p2@MYCN!1.57!36.23!MYCN;;chr2:166326200..166326216,+!p1@CSRNP3!1.54!48.52!CSRNP3;;chr13:72441315..72441454,-!p1@DACH1!1.50!59.63!DACH1;;chr7:96635178..96635181,+!p1@DLX6!1.50!30.62!DLX6;;chr3:18486354..18486377,-!p2@SATB1!1.49!36.77!SATB1;;chr2:27805866..27805879,+!p2@ZNF512!1.48!42.91!ZNF512;;chr17:59477233..59477263,+!p1@TBX2!1.47!85.51!TBX2;;chr1:216896780..216896800,-!p2@ESRRG!1.47!28.68!ESRRG;;chr2:172967621..172967637,-!p1@DLX2!1.45!71.81!DLX2;;chr2:172950227..172950249,+!p2@DLX1!1.43!25.77!DLX1;;chr7:96634878..96634900,+!p2@DLX6!1.42!25.12!DLX6;;chr13:37494365..37494381,-!p1@SMAD9!1.40!41.19!SMAD9;;chr12:114843940..114843955,-!p2@TBX5!1.40!24.37!TBX5;;chr10:131762504..131762555,-!p1@EBF3!1.39!23.51!EBF3;;chr1:216896752..216896778,-!p1@ESRRG!1.38!23.07!ESRRG;;chr13:72441074..72441172,-!p2@DACH1!1.38!22.97!DACH1;;chr3:147127142..147127168,+!p1@ZIC1!1.38!22.86!ZIC1;;chr10:8095593..8095625,+!p3@GATA3!1.35!25.23!GATA3;;chr2:5832508..5832524,+!p1@SOX11!1.35!21.35!SOX11;;chr22:19748231..19748317,+!p1@TBX1!1.34!20.81!TBX1;;chr3:147127177..147127194,+!p2@ZIC1!1.31!19.41!ZIC1;;chr2:172949484..172949522,+!p1@DLX1!1.30!18.76!DLX1;;chr2:16082155..16082169,+!p3@MYCN!1.29!18.55!MYCN;;chr21:47063625..47063658,+!p1@PCBP3!1.28!78.17!PCBP3;;chr8:80679993..80680011,-!p1@HEY1!1.28!25.88!HEY1;;chr1:151032957..151032968,+!p7@MLLT11!1.28!18.11!MLLT11;;chr3:147111231..147111281,+!p3@ZIC1!1.27!17.58!ZIC1;;chr2:176969179..176969226,+!p2@HOXD11!1.26!17.25!HOXD11;;chr7:63505799..63505904,+!p1@ZNF727!1.26!17.14!ZNF727;;chr2:176972000..176972025,+!p4@HOXD11!1.25!16.82!HOXD11;;chr7:96634908..96634923,+!p4@DLX6!1.24!16.50!DLX6;;chr5:134369905..134369972,-!p1@PITX1!1.23!24.69!PITX1;;chr2:185463247..185463263,+!p1@ZNF804A!1.22!27.71!ZNF804A;;chr5:50679228..50679288,+!p1@ISL1!1.22!15.53!ISL1;;chr2:172967242..172967265,-!p2@DLX2!1.22!15.42!DLX2;;chr1:197886461..197886558,+!p1@LHX9!1.20!14.77!LHX9;;chr11:63684602..63684664,-!p1@RCOR2!1.18!27.71!RCOR2;;chr19:38720294..38720348,-!p1@DPF1!1.18!17.79!DPF1;;chr12:115122318..115122331,-!p2@TBX3!1.17!13.91!TBX3;;chr2:219849897..219849928,-!p2@FEV!1.17!13.80!FEV;;chr7:27196267..27196311,-!p1@HOXA7!1.16!13.48!HOXA7;;chr2:219849012..219849065,-!p1@FEV!1.16!13.37!FEV;;chr6:44233252..44233296,-!p1@NFKBIE!1.15!129.28!NFKBIE;;chr12:114845810..114845824,-!p1@TBX5!1.14!12.72!TBX5;;chr12:115121962..115121987,-!p1@TBX3!1.13!104.37!TBX3;;chr1:158975744..158975769,+!p10@IFI16!1.13!12.51!IFI16;;chr9:77112225..77112238,+!p2@RORB!1.13!12.40!RORB;;chr17:70117153..70117174,+!p1@SOX9!1.12!123.57!SOX9;;chrX:84499081..84499115,+!p2@ZNF711!1.10!17.25!ZNF711;;chr19:13134772..13134822,+!p2@NFIX!1.10!17.04!NFIX;;chr17:38465441..38465481,+!p6@RARA!1.10!14.23!RARA;;chr6:44355499..44355514,+!p3@CDC5L!1.10!12.72!CDC5L;;chr20:42295713..42295738,+!p2@MYBL2!1.09!66.85!MYBL2;;chr7:138666053..138666146,-!p1@KIAA1549!1.09!46.80!KIAA1549;;chr1:170633348..170633399,+!p2@PRRX1!1.09!15.31!PRRX1;;chr2:27805971..27805981,+!p3@ZNF512!1.09!12.94!ZNF512;;chr2:74726710..74726736,-!p3@LBX2!1.09!11.32!LBX2;;chr12:85673977..85674015,+!p1@ALX1!1.09!11.32!ALX1;;chr12:103352277..103352324,+!p2@ASCL1!1.09!11.21!ASCL1;;chr18:52989031..52989079,-!p2@TCF4!1.08!25.88!TCF4;;chr7:35293685..35293718,-!p1@TBX20!1.08!11.11!TBX20;;chr5:172662197..172662216,-!p1@NKX2-5!1.08!10.89!NKX2-5;;chr3:141151009..141151033,+!p10@ZBTB38!1.08!10.89!ZBTB38;;chr2:95963052..95963106,+!p1@KCNIP3!1.07!10.67!KCNIP3;;chr20:51588873..51588953,+!p1@TSHZ2!1.06!14.02!TSHZ2;;chr8:80680024..80680046,-!p2@HEY1!1.06!11.86!HEY1;;chr4:41750839..41750850,-!p2@PHOX2B!1.06!10.35!PHOX2B;;chr1:158979686..158979745,+!p1@IFI16!1.05!339.54!IFI16;;chr1:151032833..151032850,+!p3@MLLT11!1.04!22.97!MLLT11;;chr11:31832658..31832681,-!p1@PAX6!1.04!10.03!PAX6;;chr2:16082395..16082415,+!p6@MYCN!1.04!9.92!MYCN;;chr20:20348740..20348757,+!p1@INSM1!1.03!9.60!INSM1;;chr9:126773880..126773895,+!p2@LHX2!1.02!9.49!LHX2;;chr7:28448965..28448994,+!p2@CREB5!1.00!32.02!CREB5;;chr2:74741642..74741658,+!p2@TLX2!1.00!9.06!TLX2;;chr6:44355257..44355315,+!p2@CDC5L!0.99!40.76!CDC5L;;chr3:44626446..44626477,+!p1@ZNF660!0.99!16.17!ZNF660;;chr5:174151553..174151610,+!p1@MSX2!0.99!14.66!MSX2;;chr7:96654026..96654061,-!p2@DLX5!0.99!8.84!DLX5;;chr8:11561684..11561751,+!p1@GATA4!0.99!8.84!GATA4;;chr2:166428839..166428859,+!p2@CSRNP3!0.99!8.73!CSRNP3;;chr1:153940354..153940395,+!p1@CREB3L4!0.98!35.15!CREB3L4;;chr3:40547564..40547616,+!p1@ZNF620!0.98!12.18!ZNF620;;chr7:96634850..96634874,+!p3@DLX6!0.98!8.63!DLX6;;chr1:216896801..216896812,-!p5@ESRRG!0.98!8.63!ESRRG;;chr2:172967276..172967296,-!p3@DLX2!0.98!8.52!DLX2;;chr12:115121770..115121781,-!p4@TBX3!0.98!8.52!TBX3;;chr6:126112074..126112144,+!p1@NCOA7!0.96!111.17!NCOA7;;chr7:27190547..27190591,-!p1@HOXA6!0.96!8.19!HOXA6;;chr15:80696703..80696754,+!p1@ARNT2!0.95!10.67!ARNT2;;chr17:59477275..59477286,+!p3@TBX2!0.95!10.67!TBX2;;chrX:84498989..84499003,+!p1@ZNF711!0.94!10.57!ZNF711;;chr2:25475120..25475176,-!p2@DNMT3A!0.94!10.57!DNMT3A;;chr6:44355478..44355489,+!p5@CDC5L!0.94!8.52!CDC5L;;chr2:219849805..219849819,-!p3@FEV!0.94!7.76!FEV;;chr3:147111198..147111225,+!p4@ZIC1!0.94!7.76!ZIC1;;chr4:41750922..41750939,-!p4@PHOX2B!0.94!7.76!PHOX2B;;chr12:54779511..54779577,-!p5@ZNF385A!0.94!7.66!ZNF385A;;chr7:28220198..28220269,-!p2@JAZF1!0.93!69.55!JAZF1;;chr18:55102598..55102623,+!p1@ONECUT2!0.93!7.44!ONECUT2;;chr1:164528616..164528660,+!p5@PBX1!0.92!15.53!PBX1;;chr2:2334997..2335053,-!p1@MYT1L!0.92!7.22!MYT1L;;chr15:41913690..41913753,+!p2@MGA!0.91!17.79!MGA;;chr9:124976328..124976372,-!p2@LHX6!0.91!7.12!LHX6;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!0.89!67.71!ZNF595;;chr5:174151612..174151633,+!p2@MSX2!0.89!6.79!MSX2;;chr2:16082094..16082106,+!p7@MYCN!0.89!6.69!MYCN;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!0.88!14.77!SOHLH2;;chr15:76629123..76629151,+!p1@ISL2!0.87!7.12!ISL2;;chr1:170632959..170632987,+!p4@PRRX1!0.87!7.01!PRRX1;;chr1:170632439..170632465,+!p11@PRRX1!0.87!6.47!PRRX1;;chr2:119604456..119604501,-!p2@EN1!0.87!6.47!EN1;;chr7:96635277..96635301,+!p7@DLX6!0.87!6.36!DLX6;;chr17:41623692..41623715,-!p1@ETV4!0.86!28.36!ETV4;;chr5:176738887..176738934,-!p1@MXD3!0.85!43.67!MXD3;;chr7:19157043..19157088,-!p2@TWIST1!0.85!15.85!TWIST1;;chr5:158526917..158526932,-!p1@EBF1!0.85!15.74!EBF1;;chr4:206390..206444,+!p1@ZNF876P!0.85!11.32!ZNF876P;;chr17:59477197..59477212,+!p2@TBX2!0.85!10.89!TBX2;;chr10:114886551..114886601,+!p11@TCF7L2!0.85!6.15!TCF7L2;;chr10:124895472..124895508,+!p1@HMX3!0.85!6.15!HMX3;;chr13:37494248..37494260,-!p3@SMAD9!0.85!6.15!SMAD9;;chr2:176981499..176981522,+!p2@HOXD10!0.85!6.15!HOXD10;;chr5:178368186..178368238,+!p1@ZNF454!0.84!11.11!ZNF454;;chr9:14313893..14313908,-!p7@NFIB!0.84!8.73!NFIB;;chr18:55102628..55102646,+!p2@ONECUT2!0.84!5.93!ONECUT2;;chr17:38465413..38465438,+!p5@RARA!0.83!9.38!RARA;;chr1:164528588..164528610,+!p8@PBX1!0.83!9.06!PBX1;;chr2:172967323..172967336,-!p4@DLX2!0.83!5.82!DLX2;;chr12:115121802..115121814,-!p5@TBX3!0.83!5.82!TBX3;;chr13:79177703..79177729,-!p2@POU4F1!0.83!5.82!POU4F1;;chr13:37494275..37494304,-!p2@SMAD9!0.83!5.71!SMAD9;;chr2:172967353..172967365,-!p5@DLX2!0.83!5.71!DLX2;;chr2:176973498..176973524,+!p1@HOXD10!0.83!5.71!HOXD10;;chr2:60780607..60780624,-!p2@BCL11A!0.82!18.44!BCL11A;;chr19:22817119..22817145,+!p1@ZNF492!0.82!9.70!ZNF492;;chr2:5832493..5832507,+!p2@SOX11!0.82!5.61!SOX11;;chr9:14314131..14314147,-!p2@NFIB!0.81!32.89!NFIB;;chr2:176969097..176969109,+!p3@HOXD11!0.81!5.50!HOXD11;;chr2:176994408..176994492,+!p1@HOXD8!0.81!5.50!HOXD8;;chr13:37494306..37494324,-!p4@SMAD9!0.81!5.50!SMAD9;;chr8:77593448..77593471,+!p2@ZFHX4!0.81!5.50!ZFHX4;;chr16:67063211..67063240,+!p2@CBFB!0.80!27.71!CBFB;;chr5:124082322..124082364,-!p1@ZNF608!0.80!14.34!ZNF608;;chr1:247171316..247171336,-!p3@ZNF695!0.80!8.30!ZNF695;;chr6:126111875..126111886,+!p10@NCOA7!0.80!5.28!NCOA7;;chr20:42295745..42295765,+!p1@MYBL2!0.79!92.94!MYBL2;;chr2:71127699..71127744,+!p1@VAX2!0.79!11.11!VAX2;;chr2:176969124..176969155,+!p5@HOXD11!0.79!5.18!HOXD11;;chr2:176973275..176973300,+!p4@HOXD10!0.79!5.18!HOXD10;;chr7:96635448..96635470,+!p5@DLX6!0.79!5.18!DLX6;;chr17:59477403..59477414,+!p4@TBX2!0.79!5.18!TBX2;;chr14:21994337..21994442,-!p1@SALL2!0.78!14.88!SALL2;;chr6:10412392..10412409,-!p4@TFAP2A!0.78!5.82!TFAP2A;;chr12:115122303..115122314,-!p6@TBX3!0.78!5.07!TBX3;;chr12:2986206..2986258,-!p2@FOXM1!0.77!32.35!FOXM1;;chr1:151431647..151431669,-!p2@POGZ!0.77!26.31!POGZ;;chr9:109625401..109625458,+!p1@ZNF462!0.77!13.69!ZNF462;;chr1:164528297..164528309,+!p9@PBX1!0.77!6.58!PBX1;;chr6:126112039..126112062,+!p8@NCOA7!0.77!6.04!NCOA7;;chr2:16082418..16082429,+!p8@MYCN!0.77!4.85!MYCN;;chr2:208030647..208030689,-!p1@KLF7!0.76!43.99!KLF7;;chr8:77593474..77593612,+!p1@ZFHX4!0.76!21.78!ZFHX4;;chr1:247171347..247171366,-!p2@ZNF695!0.76!9.27!ZNF695;;chr17:41622765..41622821,-!p2@ETV4!0.76!7.66!ETV4;;chr17:41277372..41277418,-!p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| ||
|ffid_belonging_in_development=CL:0000133,CL:0000221,UBERON:0002532,UBERON:0006601,UBERON:0010316 | |||
|fonse_cell_line=FF:0100932 | |fonse_cell_line=FF:0100932 | ||
|fonse_cell_line_closure=FF:0100932 | |fonse_cell_line_closure=FF:0100932 | ||
Line 37: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/neuroblastoma%2520cell%2520line%253aNB-1.CNhs11284.10539-107G8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/neuroblastoma%2520cell%2520line%253aNB-1.CNhs11284.10539-107G8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/neuroblastoma%2520cell%2520line%253aNB-1.CNhs11284.10539-107G8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/neuroblastoma%2520cell%2520line%253aNB-1.CNhs11284.10539-107G8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/neuroblastoma%2520cell%2520line%253aNB-1.CNhs11284.10539-107G8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10539-107G8 | |id=FF:10539-107G8 | ||
|is_a=EFO:0002091;;FF:0000210;;FF:0100932 | |is_a=EFO:0002091;;FF:0000210;;FF:0100932 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11284 | |||
|library_id_phase_based=2:CNhs11284 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10539 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10539 | |||
|name=neuroblastoma cell line:NB-1 | |name=neuroblastoma cell line:NB-1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 45: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11284,LSID759,release008,COMPLETED | |profile_hcage=CNhs11284,LSID759,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| |||
|rna_box=107 | |rna_box=107 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
Line 60: | Line 78: | ||
|rna_weight_ug=42.70945 | |rna_weight_ug=42.70945 | ||
|sample_age=2 | |sample_age=2 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB1953 | |sample_cell_catalog=RCB1953 | ||
|sample_cell_line=NB-1 | |sample_cell_line=NB-1 | ||
Line 81: | Line 100: | ||
|top_motifs=NANOG:3.80652404284;FOXM1:2.39321908116;TFDP1:2.36259522134;AHR_ARNT_ARNT2:1.98830525964;GFI1:1.90952179435;NFY{A,B,C}:1.85661534419;SOX2:1.80863601583;NRF1:1.8039124736;FOX{I1,J2}:1.76430559927;YY1:1.68868958113;CDC5L:1.66719959593;PAX5:1.57436126997;PAX6:1.55536063205;SOX{8,9,10}:1.5538597947;E2F1..5:1.53449551427;NKX2-1,4:1.486280169;NKX2-3_NKX2-5:1.43823987753;PAX3,7:1.38752047848;PDX1:1.37141736471;ZNF143:1.37007755486;PATZ1:1.35515880698;NKX6-1,2:1.33346781658;BREu{core}:1.30454554511;MED-1{core}:1.30101092911;STAT1,3:1.26228273281;SOX17:1.26104841755;ZFP161:1.245016465;POU6F1:1.23597522945;LEF1_TCF7_TCF7L1,2:1.20317263912;ATF4:1.15013334662;ADNP_IRX_SIX_ZHX:1.12623724304;ONECUT1,2:1.07644199774;ARID5B:1.02000117503;PRRX1,2:1.00002116917;RORA:0.981279333285;ELK1,4_GABP{A,B1}:0.962508860797;ZIC1..3:0.957812528784;RBPJ:0.935580508727;POU1F1:0.919413146566;OCT4_SOX2{dimer}:0.881242887327;RREB1:0.876555299563;ZNF423:0.867019497594;JUN:0.860254049582;FOXP1:0.84459187766;EVI1:0.830932709077;HOXA9_MEIS1:0.822654692198;PITX1..3:0.803823093472;VSX1,2:0.803791124815;DBP:0.800035475016;HOX{A6,A7,B6,B7}:0.794443875556;EN1,2:0.78415529217;RFX2..5_RFXANK_RFXAP:0.77321301854;LHX3,4:0.769660165299;ATF2:0.752898418365;GFI1B:0.734540137569;REST:0.730336493025;NHLH1,2:0.715338914882;CDX1,2,4:0.697391714666;POU5F1:0.696773819849;ESRRA:0.694413396446;PAX8:0.623443444393;CRX:0.592155920817;FOXD3:0.575080650122;ZNF384:0.565380845579;TAL1_TCF{3,4,12}:0.560118287865;IKZF1:0.558814302843;EGR1..3:0.534344286037;TFAP2B:0.499025618824;MYFfamily:0.485740051145;GTF2I:0.474102635594;RFX1:0.460629551862;TGIF1:0.440970305377;NR1H4:0.423078271912;HIC1:0.419525275236;FOXQ1:0.418432493006;PAX4:0.417119341123;PAX1,9:0.408469660106;MYB:0.407063051883;PBX1:0.40531686275;CUX2:0.39286560302;HOX{A4,D4}:0.392057890489;BPTF:0.382345377098;HAND1,2:0.372594299444;CREB1:0.362219940971;MZF1:0.342846832248;T:0.330414694394;TOPORS:0.304261075877;PRDM1:0.299209308095;AIRE:0.29567480315;ATF5_CREB3:0.294045818571;SOX5:0.28120224318;KLF4:0.25775793419;MAZ:0.252394929464;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.245844654948;ZBTB6:0.243712298534;SMAD1..7,9:0.235180777105;MYBL2:0.222361928033;GATA4:0.188903856869;HBP1_HMGB_SSRP1_UBTF:0.183950959702;POU3F1..4:0.182110865347;NR3C1:0.146913087695;GATA6:0.108855811399;MEF2{A,B,C,D}:0.0881488647851;HNF1A:0.0219096026648;POU2F1..3:-0.00975179462661;bHLH_family:-0.0247822615416;AR:-0.0485327169087;SREBF1,2:-0.0693826442481;MTE{core}:-0.0778183077353;GTF2A1,2:-0.0815223715507;FOXA2:-0.105000321224;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.113091457905;HSF1,2:-0.11582849286;FOSL2:-0.16788600755;STAT5{A,B}:-0.168474306896;NFIL3:-0.178771222218;ZBTB16:-0.182843634512;DMAP1_NCOR{1,2}_SMARC:-0.189036703112;PPARG:-0.205532875426;GCM1,2:-0.209426847176;TBX4,5:-0.221570579863;HOX{A5,B5}:-0.228689109871;FOXL1:-0.233271462136;ELF1,2,4:-0.241692788232;XCPE1{core}:-0.256790799395;TFCP2:-0.280787234937;EP300:-0.289873539874;IKZF2:-0.299794217555;FOXN1:-0.310491122791;HLF:-0.335242089175;MTF1:-0.340021743174;NFE2L1:-0.353450197222;NFE2L2:-0.357308619978;PAX2:-0.359131350325;HES1:-0.369559514503;UFEwm:-0.376567925379;NANOG{mouse}:-0.37716758753;TLX1..3_NFIC{dimer}:-0.412435925644;RXR{A,B,G}:-0.435445671056;NFATC1..3:-0.442115922459;SPI1:-0.459689081315;TP53:-0.464014240598;NR5A1,2:-0.473721270551;BACH2:-0.491181750527;NFIX:-0.505317628855;HNF4A_NR2F1,2:-0.507074118407;NFKB1_REL_RELA:-0.528997337093;ESR1:-0.535309617571;FOX{F1,F2,J1}:-0.54587292921;SNAI1..3:-0.550949934341;NKX2-2,8:-0.554468028109;RUNX1..3:-0.579971853087;FOXP3:-0.57998803777;FOX{D1,D2}:-0.585677349144;TFAP4:-0.602346194206;TEF:-0.610823084472;TFAP2{A,C}:-0.612319115386;NFE2:-0.633665157852;MAFB:-0.636417746016;SPIB:-0.637123349102;FOS_FOS{B,L1}_JUN{B,D}:-0.638135618348;LMO2:-0.65736334656;CEBPA,B_DDIT3:-0.674788321355;HIF1A:-0.692805544528;NKX3-1:-0.699961272742;EBF1:-0.708532590432;XBP1:-0.735489630939;GZF1:-0.75622643812;IRF7:-0.813288399441;ETS1,2:-0.831899706414;ZNF238:-0.837651428327;ZEB1:-0.843890625784;IRF1,2:-0.84926944577;ZNF148:-0.911609042904;TBP:-0.952697886324;SP1:-0.995452301235;ATF6:-1.02311816104;NR6A1:-1.02548486878;ALX4:-1.03734842786;FOXO1,3,4:-1.037433431;TLX2:-1.04127193472;ALX1:-1.08073818069;GLI1..3:-1.13634823366;NKX3-2:-1.15915068975;TEAD1:-1.21053547985;SRF:-1.2646285614;MYOD1:-1.28358979459;HMGA1,2:-1.3054965041;STAT2,4,6:-1.43230161237;HMX1:-1.54682728154;RXRA_VDR{dimer}:-1.64220318277;SPZ1:-1.951317722 | |top_motifs=NANOG:3.80652404284;FOXM1:2.39321908116;TFDP1:2.36259522134;AHR_ARNT_ARNT2:1.98830525964;GFI1:1.90952179435;NFY{A,B,C}:1.85661534419;SOX2:1.80863601583;NRF1:1.8039124736;FOX{I1,J2}:1.76430559927;YY1:1.68868958113;CDC5L:1.66719959593;PAX5:1.57436126997;PAX6:1.55536063205;SOX{8,9,10}:1.5538597947;E2F1..5:1.53449551427;NKX2-1,4:1.486280169;NKX2-3_NKX2-5:1.43823987753;PAX3,7:1.38752047848;PDX1:1.37141736471;ZNF143:1.37007755486;PATZ1:1.35515880698;NKX6-1,2:1.33346781658;BREu{core}:1.30454554511;MED-1{core}:1.30101092911;STAT1,3:1.26228273281;SOX17:1.26104841755;ZFP161:1.245016465;POU6F1:1.23597522945;LEF1_TCF7_TCF7L1,2:1.20317263912;ATF4:1.15013334662;ADNP_IRX_SIX_ZHX:1.12623724304;ONECUT1,2:1.07644199774;ARID5B:1.02000117503;PRRX1,2:1.00002116917;RORA:0.981279333285;ELK1,4_GABP{A,B1}:0.962508860797;ZIC1..3:0.957812528784;RBPJ:0.935580508727;POU1F1:0.919413146566;OCT4_SOX2{dimer}:0.881242887327;RREB1:0.876555299563;ZNF423:0.867019497594;JUN:0.860254049582;FOXP1:0.84459187766;EVI1:0.830932709077;HOXA9_MEIS1:0.822654692198;PITX1..3:0.803823093472;VSX1,2:0.803791124815;DBP:0.800035475016;HOX{A6,A7,B6,B7}:0.794443875556;EN1,2:0.78415529217;RFX2..5_RFXANK_RFXAP:0.77321301854;LHX3,4:0.769660165299;ATF2:0.752898418365;GFI1B:0.734540137569;REST:0.730336493025;NHLH1,2:0.715338914882;CDX1,2,4:0.697391714666;POU5F1:0.696773819849;ESRRA:0.694413396446;PAX8:0.623443444393;CRX:0.592155920817;FOXD3:0.575080650122;ZNF384:0.565380845579;TAL1_TCF{3,4,12}:0.560118287865;IKZF1:0.558814302843;EGR1..3:0.534344286037;TFAP2B:0.499025618824;MYFfamily:0.485740051145;GTF2I:0.474102635594;RFX1:0.460629551862;TGIF1:0.440970305377;NR1H4:0.423078271912;HIC1:0.419525275236;FOXQ1:0.418432493006;PAX4:0.417119341123;PAX1,9:0.408469660106;MYB:0.407063051883;PBX1:0.40531686275;CUX2:0.39286560302;HOX{A4,D4}:0.392057890489;BPTF:0.382345377098;HAND1,2:0.372594299444;CREB1:0.362219940971;MZF1:0.342846832248;T:0.330414694394;TOPORS:0.304261075877;PRDM1:0.299209308095;AIRE:0.29567480315;ATF5_CREB3:0.294045818571;SOX5:0.28120224318;KLF4:0.25775793419;MAZ:0.252394929464;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.245844654948;ZBTB6:0.243712298534;SMAD1..7,9:0.235180777105;MYBL2:0.222361928033;GATA4:0.188903856869;HBP1_HMGB_SSRP1_UBTF:0.183950959702;POU3F1..4:0.182110865347;NR3C1:0.146913087695;GATA6:0.108855811399;MEF2{A,B,C,D}:0.0881488647851;HNF1A:0.0219096026648;POU2F1..3:-0.00975179462661;bHLH_family:-0.0247822615416;AR:-0.0485327169087;SREBF1,2:-0.0693826442481;MTE{core}:-0.0778183077353;GTF2A1,2:-0.0815223715507;FOXA2:-0.105000321224;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.113091457905;HSF1,2:-0.11582849286;FOSL2:-0.16788600755;STAT5{A,B}:-0.168474306896;NFIL3:-0.178771222218;ZBTB16:-0.182843634512;DMAP1_NCOR{1,2}_SMARC:-0.189036703112;PPARG:-0.205532875426;GCM1,2:-0.209426847176;TBX4,5:-0.221570579863;HOX{A5,B5}:-0.228689109871;FOXL1:-0.233271462136;ELF1,2,4:-0.241692788232;XCPE1{core}:-0.256790799395;TFCP2:-0.280787234937;EP300:-0.289873539874;IKZF2:-0.299794217555;FOXN1:-0.310491122791;HLF:-0.335242089175;MTF1:-0.340021743174;NFE2L1:-0.353450197222;NFE2L2:-0.357308619978;PAX2:-0.359131350325;HES1:-0.369559514503;UFEwm:-0.376567925379;NANOG{mouse}:-0.37716758753;TLX1..3_NFIC{dimer}:-0.412435925644;RXR{A,B,G}:-0.435445671056;NFATC1..3:-0.442115922459;SPI1:-0.459689081315;TP53:-0.464014240598;NR5A1,2:-0.473721270551;BACH2:-0.491181750527;NFIX:-0.505317628855;HNF4A_NR2F1,2:-0.507074118407;NFKB1_REL_RELA:-0.528997337093;ESR1:-0.535309617571;FOX{F1,F2,J1}:-0.54587292921;SNAI1..3:-0.550949934341;NKX2-2,8:-0.554468028109;RUNX1..3:-0.579971853087;FOXP3:-0.57998803777;FOX{D1,D2}:-0.585677349144;TFAP4:-0.602346194206;TEF:-0.610823084472;TFAP2{A,C}:-0.612319115386;NFE2:-0.633665157852;MAFB:-0.636417746016;SPIB:-0.637123349102;FOS_FOS{B,L1}_JUN{B,D}:-0.638135618348;LMO2:-0.65736334656;CEBPA,B_DDIT3:-0.674788321355;HIF1A:-0.692805544528;NKX3-1:-0.699961272742;EBF1:-0.708532590432;XBP1:-0.735489630939;GZF1:-0.75622643812;IRF7:-0.813288399441;ETS1,2:-0.831899706414;ZNF238:-0.837651428327;ZEB1:-0.843890625784;IRF1,2:-0.84926944577;ZNF148:-0.911609042904;TBP:-0.952697886324;SP1:-0.995452301235;ATF6:-1.02311816104;NR6A1:-1.02548486878;ALX4:-1.03734842786;FOXO1,3,4:-1.037433431;TLX2:-1.04127193472;ALX1:-1.08073818069;GLI1..3:-1.13634823366;NKX3-2:-1.15915068975;TEAD1:-1.21053547985;SRF:-1.2646285614;MYOD1:-1.28358979459;HMGA1,2:-1.3054965041;STAT2,4,6:-1.43230161237;HMX1:-1.54682728154;RXRA_VDR{dimer}:-1.64220318277;SPZ1:-1.951317722 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10539-107G8;search_select_hide=table117:FF:10539-107G8 | |||
}} | }} |
Latest revision as of 14:28, 3 June 2020
Name: | neuroblastoma cell line:NB-1 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs11284 |
Sample type: | cell lines |
Genomic View: | UCSC |
RefEX: | Specific genes |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11284
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11284
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.216 |
10 | 10 | 0.24 |
100 | 100 | 0.77 |
101 | 101 | 0.864 |
102 | 102 | 0.571 |
103 | 103 | 0.0221 |
104 | 104 | 0.317 |
105 | 105 | 0.594 |
106 | 106 | 8.45173e-4 |
107 | 107 | 0.0234 |
108 | 108 | 0.724 |
109 | 109 | 0.0491 |
11 | 11 | 0.112 |
110 | 110 | 0.258 |
111 | 111 | 0.226 |
112 | 112 | 0.0783 |
113 | 113 | 0.24 |
114 | 114 | 0.0218 |
115 | 115 | 0.52 |
116 | 116 | 0.298 |
117 | 117 | 0.1 |
118 | 118 | 0.362 |
119 | 119 | 0.383 |
12 | 12 | 0.806 |
120 | 120 | 0.206 |
121 | 121 | 0.983 |
122 | 122 | 0.638 |
123 | 123 | 0.663 |
124 | 124 | 0.146 |
125 | 125 | 0.967 |
126 | 126 | 0.142 |
127 | 127 | 0.127 |
128 | 128 | 0.0162 |
129 | 129 | 0.0554 |
13 | 13 | 0.0228 |
130 | 130 | 0.0135 |
131 | 131 | 0.55 |
132 | 132 | 0.929 |
133 | 133 | 0.86 |
134 | 134 | 0.993 |
135 | 135 | 0.965 |
136 | 136 | 0.643 |
137 | 137 | 0.285 |
138 | 138 | 0.432 |
139 | 139 | 0.0952 |
14 | 14 | 0.651 |
140 | 140 | 0.0307 |
141 | 141 | 0.399 |
142 | 142 | 0.717 |
143 | 143 | 0.0986 |
144 | 144 | 0.65 |
145 | 145 | 0.231 |
146 | 146 | 0.959 |
147 | 147 | 0.609 |
148 | 148 | 0.0328 |
149 | 149 | 0.104 |
15 | 15 | 0.122 |
150 | 150 | 0.284 |
151 | 151 | 0.403 |
152 | 152 | 0.0171 |
153 | 153 | 0.705 |
154 | 154 | 0.791 |
155 | 155 | 0.574 |
156 | 156 | 0.628 |
157 | 157 | 0.643 |
158 | 158 | 0.927 |
159 | 159 | 0.179 |
16 | 16 | 0.0936 |
160 | 160 | 0.0739 |
161 | 161 | 0.271 |
162 | 162 | 0.619 |
163 | 163 | 0.896 |
164 | 164 | 0.0144 |
165 | 165 | 0.0774 |
166 | 166 | 0.964 |
167 | 167 | 0.311 |
168 | 168 | 0.0306 |
169 | 169 | 0.0149 |
17 | 17 | 0.218 |
18 | 18 | 0.291 |
19 | 19 | 0.0814 |
2 | 2 | 0.354 |
20 | 20 | 0.535 |
21 | 21 | 0.392 |
22 | 22 | 0.15 |
23 | 23 | 0.0207 |
24 | 24 | 0.249 |
25 | 25 | 0.789 |
26 | 26 | 0.0225 |
27 | 27 | 0.324 |
28 | 28 | 0.617 |
29 | 29 | 0.234 |
3 | 3 | 0.0493 |
30 | 30 | 0.618 |
31 | 31 | 0.6 |
32 | 32 | 0.00102 |
33 | 33 | 0.367 |
34 | 34 | 0.593 |
35 | 35 | 0.614 |
36 | 36 | 0.959 |
37 | 37 | 0.159 |
38 | 38 | 0.189 |
39 | 39 | 0.253 |
4 | 4 | 0.525 |
40 | 40 | 0.385 |
41 | 41 | 0.208 |
42 | 42 | 0.271 |
43 | 43 | 0.0948 |
44 | 44 | 0.249 |
45 | 45 | 0.365 |
46 | 46 | 0.141 |
47 | 47 | 0.326 |
48 | 48 | 0.177 |
49 | 49 | 0.18 |
5 | 5 | 0.306 |
50 | 50 | 0.455 |
51 | 51 | 0.56 |
52 | 52 | 0.11 |
53 | 53 | 0.852 |
54 | 54 | 0.467 |
55 | 55 | 0.0188 |
56 | 56 | 0.276 |
57 | 57 | 0.853 |
58 | 58 | 0.275 |
59 | 59 | 0.0333 |
6 | 6 | 0.714 |
60 | 60 | 0.0151 |
61 | 61 | 0.415 |
62 | 62 | 0.163 |
63 | 63 | 0.109 |
64 | 64 | 0.691 |
65 | 65 | 0.0928 |
66 | 66 | 0.64 |
67 | 67 | 0.292 |
68 | 68 | 0.316 |
69 | 69 | 0.144 |
7 | 7 | 0.197 |
70 | 70 | 0.00687 |
71 | 71 | 0.0494 |
72 | 72 | 0.278 |
73 | 73 | 0.0229 |
74 | 74 | 0.303 |
75 | 75 | 0.211 |
76 | 76 | 0.466 |
77 | 77 | 0.0806 |
78 | 78 | 0.123 |
79 | 79 | 0.372 |
8 | 8 | 0.0771 |
80 | 80 | 0.145 |
81 | 81 | 0.49 |
82 | 82 | 0.151 |
83 | 83 | 0.0192 |
84 | 84 | 0.429 |
85 | 85 | 0.0573 |
86 | 86 | 0.67 |
87 | 87 | 0.227 |
88 | 88 | 0.431 |
89 | 89 | 0.151 |
9 | 9 | 0.279 |
90 | 90 | 0.432 |
91 | 91 | 0.0215 |
92 | 92 | 0.063 |
93 | 93 | 0.29 |
94 | 94 | 0.107 |
95 | 95 | 0.0282 |
96 | 96 | 0.507 |
97 | 97 | 0.894 |
98 | 98 | 0.509 |
99 | 99 | 0.426 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11284
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100932 neuroblastoma cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000333 (migratory neural crest cell)
0000003 (native cell)
0000548 (animal cell)
0002321 (embryonic cell)
0000219 (motile cell)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
171 (neuroectodermal tumor)
3095 (germ cell and embryonal cancer)
2994 (germ cell cancer)
169 (neuroendocrine tumor)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000013 (sympathetic nervous system)
0004121 (ectoderm-derived structure)
0011216 (organ system subdivision)
0002410 (autonomic nervous system)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0000010 (peripheral nervous system)
0001016 (nervous system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100932 (neuroblastoma cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000221 (ectodermal cell)
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)