FF:10571-108B4: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON: | |DRA_sample_Accession=CAGE@SAMD00005329 | ||
|accession_numbers=CAGE;DRX007917;DRR008789;DRZ000214;DRZ001599;DRZ011564;DRZ012949 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000995,UBERON:0003134,UBERON:0005156,UBERON:0000062,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000990,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003133,UBERON:0003975,UBERON:0004175,UBERON:0010317,UBERON:0003100,UBERON:0000474 | |||
|ancestors_in_cell_lineage_facet=CL:0000000 | |ancestors_in_cell_lineage_facet=CL:0000000 | ||
|ancestors_in_disease_facet=DOID:0060072,DOID:0060084,DOID:127, | |ancestors_in_disease_facet=DOID:4,DOID:14566,DOID:0060072,DOID:0060084,DOID:127 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0102694 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score | |||
|fonse_cell_line=FF:0102694 | |fonse_cell_line=FF:0102694 | ||
|fonse_cell_line_closure=FF:0102694 | |fonse_cell_line_closure=FF:0102694 | ||
| Line 35: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/leiomyoma%2520cell%2520line%253a15425.CNhs11724.10571-108B4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/leiomyoma%2520cell%2520line%253a15425.CNhs11724.10571-108B4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/leiomyoma%2520cell%2520line%253a15425.CNhs11724.10571-108B4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/leiomyoma%2520cell%2520line%253a15425.CNhs11724.10571-108B4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/leiomyoma%2520cell%2520line%253a15425.CNhs11724.10571-108B4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10571-108B4 | |id=FF:10571-108B4 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0102694 | ||
|is_obsolete= | |||
|library_id=CNhs11724 | |||
|library_id_phase_based=2:CNhs11724 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10571 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10571 | |||
|name=leiomyoma cell line:15425 | |name=leiomyoma cell line:15425 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11724,LSID819,release009,COMPLETED | |profile_hcage=CNhs11724,LSID819,release009,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0,0,0,0,0.136294971584712,0,0.143078302490569,0.0326004309478111,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209602098575768,0,0.061367927484915,0,0,0,0.0247779587017721,0,0,-0.132956589778862,0,0,0,0,0,0,0,0,0,0,0,0,0.0737287109379925,0.12273585496983,0,0,0.12273585496983,0,0,0,0,0.124091479722715,0,0,0,0,0,0,0.12273585496983,0.0257434937272245,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.00802774294106867,0,0,0,-0.0584468268118252,0.217624407211736,0,0.420440434684083,0,0,0.0247005037321232,0.140438681474377,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13923735096284,0.12273585496983,0,0,0.0601785374282726,0.197890117566592,0,0,0,0,0,0 | |||
|repeat_enrich_byname=0,0,0,0,0.0247005037321232,0,0,0,0,0,0,0,0,0.420440434684083,0,0,-0.028860119707477,0,-0.053645784067925,-0.143515142523472,0,0,0.109977944366134,0,0.12273585496983,0,0,0,0,0.12273585496983,0,0,-0.128119866952565,0,0.0723233033805147,0.061367927484915,0,0,0,0.082216221502946,-0.182736375928578,0,0.035962156192532,0.0543915938924614,0,0,0,0,0.384401258210793,0,-0.120879483793741,-0.0827201683234173,0.154258519413912,0.312203744714648,-0.055712496781182,0,0,0,-0.0066338768384345,-0.180880595437887,0,0,-0.060411924266959,-0.0108223132867005,0,0,0.271000891666612,0,0.368974033450728,0.182390740050142,0,0.0840238637616723,0,0,0,0,0,0,0,0,0,0,0,0.552445152062959,-0.108669841100881,0,0,0.12273585496983,0,-0.012646153265925,0,0.00487298547588653,0.0979357338140341,0.0932931324393348,0.0154620167355203,-0.0111806397002484,0,0.214292570990952,-0.069753446451247,-0.208276531169863,0.0172572058722851,0.273038585312945,0.281240170220754,0,0.193320170982968,-0.269590331113146,0,-0.00802774294106867,-0.0899672793494732,0.212326289612726,-0.151014087803265,0,0,0,0.00562065015153201,0,-0.270044466872566,0.0265675835240918,-0.076286723965376,0.068052376584335,0.0347027294895514,0.064031758681427,-0.0527379128530057,0.635370525463055,-0.0369960182125113,0.0190650747556191,0.34651318877363,0,0,-0.0593204594995483,0.117282539291648,0.0515862108476784,-0.319213171507581,0.00205716946348256,-0.361241606841151,0.22826874059373,0.0328517737741459,-0.09336151322124,-0.170005185017019,0,0.00868399849697343,-0.107555341100811,0,0,0,0,0,-0.217742673887387,-0.0682702532595654,-0.0145368059774574,0,-0.145894345615224,-0.00697609426368595,-0.0389449313521538,0,-0.372722783627525,-0.0232740424875646,-0.00146115069019448,-0.278146492616505,0,-0.031610102229444,-0.138830104397569,-0.246911712262671,0.435248814423472,-0.0584468268118252,-0.172640169225187,-0.490061896172238,-0.102525291733719,0.124074676156325,-0.0960212867365194,1.11661750340808,0,-0.0893776453185413,-0.162815833620659,-0.025211608680912,0.034876764394828,0,-0.051509804822947,0,-0.343583291273926,0,-0.217920657448624,0.121611721745006,-0.439289374580686,0.0128187459604889,0,-0.09856118631863,0.458760284480505,0,0.011945896237411,0,0,0.407464681215905,-0.139864201962039,-0.150282500379674,0.0093170441563545,0,0.0868155764099388,0,0.12273585496983,0.283267747124269,0.127449071159807,0,0.3946491480635,0.20716998835132,0.141812450578132,0.246954035489262,0,0,0.267314202953827,0,0,-0.0105105246530753,0,-0.0243657847936785,-0.130590486516926,0,0.0396836913812934,0,0,0.242912668718908,0.12273585496983,0.274363755014503,0,0.218318755578087,0.27802724016772,0.303812321693951,0,0,0.296613001671098,0,0,-0.0304925738678028,0,0,0,0,0,-0.172412540840738,-0.0582203285453501,0,0,0,0,0,0,0,0,0,1.22209692016928,0.553175177099515,0.00487159424284501,0.173595585994678,0.061367927484915,0,0,0,0.147201706370721,-0.203236562094724,0.296613001671098,0.0864560490804557,0,0,0,0,-0.0861409897892114,0,0,0,0,-0.057730457053664,0.141214308512803,0,0,0,0.280877362948754,0,0,0.12273585496983,0.00642071001673976,-0.178675100062451,0,0,0.244965561413215,0,0.0734994256311354,0.0411539754229882,0,-0.161762652459855,-0.158521099625821,-0.589822215858518,0,0,-0.261347131789888,0,0.061367927484915,-0.0159547749574203,0.0403656320041633,0,0,0,0,0,0,0,0,0.256907377370845,0.061367927484915,0,0,0,0,0,0,0,0,0,0,0.251300717223685,0.204388945012587,0.12273585496983,0,0,0,0,0,0,0.0986298318909267,-0.0509943149708623,0,0,0,0,0,0,0,0,-0.000204049892641112,0,0,0,0,0,0.0257434937272245,0,0,0,0,0.0652008618956222,0,0,0.143078302490569,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17329391563565,0.15098436142328,0,0,0,0,0,0,0,0.0880918107181052,0,0,0,0,-0.113884373708977,0,0,0,0.0179394701806732,0,0.136294971584712,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.061367927484915,0,0,0,-0.0383177404437027,0.127575358576654,0,0,0,0,0.240551020449978,0,0,0,0,0,0,0.116966076807022,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12273585496983,0,0,0,0,0,0,0.0265098836798265,0,0,0,0,0.719798124789944,0,0,0.0247779587017721,0,0,-0.0920328098005262,0,0,0,0,0.0404824264443693,0,-0.0783024123362455,0.360428914153092,-0.0125270357490582,0,0,0,0.203955576517977,0,0,0,0.12273585496983,0.0559584675509283,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.209602098575768,0,0,0,0,0,0,0,0,0,0,0,0,0.061367927484915,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0340113632754165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.216594533402459,0,0,0,-0.090350374687214,0,0,0,0,0,0,0,0,0.12273585496983,0,0,0,0,0,0,0,0,0,0,0,0.12273585496983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296613001671098,0,0,0,-0.0425037580261989,0,0,0,0,0,0,0,0,0,0,0,0,0,0.314703033685141,0,0.13394212334806,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296613001671098,0.362510498430839,0,0,0,0,-0.0476371106609188,0,0,0,0,0,0,0.895330514608985,-0.0260605703169383,0,0,0,0,0,0,0,0,0,0,0,0,0,0.376397374761001,0,0,0.300378189901445,0,0,0,0,0,0,0,0,0,0,0,0,-0.0613201791501264,0,0,0,0,0,0,0,0,0,0.12273585496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| |||
|rna_box=108 | |rna_box=108 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 78: | ||
|rna_weight_ug=65.1704 | |rna_weight_ug=65.1704 | ||
|sample_age= | |sample_age= | ||
|sample_category=cell lines | |||
|sample_cell_catalog= | |sample_cell_catalog= | ||
|sample_cell_line= | |sample_cell_line= | ||
| Line 69: | Line 91: | ||
|sample_ethnicity= | |sample_ethnicity= | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;1.31179635891042e-209!GO:0005737;cytoplasm;5.22926824869728e-203!GO:0043226;organelle;2.13027034208726e-162!GO:0043229;intracellular organelle;5.54546419200155e-162!GO:0043231;intracellular membrane-bound organelle;1.09865653029966e-161!GO:0043227;membrane-bound organelle;1.629768765338e-161!GO:0044444;cytoplasmic part;5.76243978591653e-159!GO:0044422;organelle part;8.81182820447413e-133!GO:0044446;intracellular organelle part;3.5457127431775e-131!GO:0032991;macromolecular complex;3.32217860830391e-88!GO:0030529;ribonucleoprotein complex;5.68793670318538e-83!GO:0005515;protein binding;9.85435766675784e-72!GO:0044238;primary metabolic process;7.3729875377058e-68!GO:0005739;mitochondrion;6.80869264639589e-67!GO:0044237;cellular metabolic process;1.21855156224915e-66!GO:0043233;organelle lumen;4.96631933942508e-63!GO:0031974;membrane-enclosed lumen;4.96631933942508e-63!GO:0043170;macromolecule metabolic process;6.03724466277247e-61!GO:0031090;organelle membrane;1.05260718441369e-59!GO:0003723;RNA binding;1.67542988391793e-57!GO:0044428;nuclear part;7.69919036706693e-57!GO:0005840;ribosome;1.75710096633305e-52!GO:0019538;protein metabolic process;2.9275073783663e-50!GO:0003735;structural constituent of ribosome;4.6468411329271e-46!GO:0015031;protein transport;7.04300023334323e-46!GO:0016043;cellular component organization and biogenesis;1.79078333029509e-45!GO:0044429;mitochondrial part;3.14793492296893e-45!GO:0044260;cellular macromolecule metabolic process;5.74003749922014e-45!GO:0006412;translation;1.24526391303864e-44!GO:0033036;macromolecule localization;1.95602598380514e-44!GO:0044267;cellular protein metabolic process;9.86656395835805e-44!GO:0045184;establishment of protein localization;2.17272992475535e-43!GO:0005634;nucleus;1.22072261196822e-42!GO:0043234;protein complex;1.29416786988652e-42!GO:0008104;protein localization;6.546904626919e-42!GO:0009058;biosynthetic process;1.48070205659571e-41!GO:0006396;RNA processing;3.2783944743952e-41!GO:0005829;cytosol;4.0659790738409e-40!GO:0031967;organelle envelope;1.05530284005764e-39!GO:0031975;envelope;1.37703179472977e-39!GO:0033279;ribosomal subunit;1.6407497324585e-38!GO:0009059;macromolecule biosynthetic process;5.63429775860641e-38!GO:0044249;cellular biosynthetic process;1.74630660623165e-36!GO:0046907;intracellular transport;2.10103676396975e-34!GO:0031981;nuclear lumen;8.86139592526866e-33!GO:0016071;mRNA metabolic process;9.63913393128169e-32!GO:0008380;RNA splicing;1.14311246659968e-30!GO:0006886;intracellular protein transport;1.16251252066366e-29!GO:0005740;mitochondrial envelope;1.89170075271808e-29!GO:0006397;mRNA processing;3.14070306184321e-28!GO:0031966;mitochondrial membrane;8.39335304458881e-28!GO:0065003;macromolecular complex assembly;2.13259449895907e-27!GO:0019866;organelle inner membrane;2.67548624306386e-27!GO:0043283;biopolymer metabolic process;4.78772904263539e-27!GO:0022613;ribonucleoprotein complex biogenesis and assembly;8.94634011349619e-27!GO:0012505;endomembrane system;9.37624731526202e-27!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.97750861765324e-26!GO:0005743;mitochondrial inner membrane;4.23577668836136e-26!GO:0005783;endoplasmic reticulum;4.54333608780427e-26!GO:0006996;organelle organization and biogenesis;5.40323857069861e-26!GO:0022607;cellular component assembly;5.23616392335014e-25!GO:0006119;oxidative phosphorylation;1.12781368363955e-24!GO:0043228;non-membrane-bound organelle;2.07677762542679e-24!GO:0043232;intracellular non-membrane-bound organelle;2.07677762542679e-24!GO:0010467;gene expression;2.12695233015445e-23!GO:0051649;establishment of cellular localization;5.30557753124689e-23!GO:0044455;mitochondrial membrane part;6.41109721994442e-23!GO:0051641;cellular localization;8.9108775637642e-23!GO:0006457;protein folding;1.88693118424813e-22!GO:0005794;Golgi apparatus;3.44385390826505e-22!GO:0044445;cytosolic part;5.07724642210171e-22!GO:0005681;spliceosome;5.92287003983982e-22!GO:0015934;large ribosomal subunit;4.01557485833914e-20!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;4.01557485833914e-20!GO:0044432;endoplasmic reticulum part;5.35548470467003e-20!GO:0015935;small ribosomal subunit;2.67451895873042e-19!GO:0048770;pigment granule;6.38854051459063e-19!GO:0042470;melanosome;6.38854051459063e-19!GO:0005746;mitochondrial respiratory chain;1.03487421775692e-18!GO:0005654;nucleoplasm;1.33400374414752e-18!GO:0031980;mitochondrial lumen;1.65685923629674e-18!GO:0005759;mitochondrial matrix;1.65685923629674e-18!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;4.00669638313347e-18!GO:0016462;pyrophosphatase activity;4.70053288639848e-18!GO:0016817;hydrolase activity, acting on acid anhydrides;5.95989078489874e-18!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.36123763778075e-17!GO:0017111;nucleoside-triphosphatase activity;2.62569482201698e-17!GO:0000502;proteasome complex (sensu Eukaryota);1.53258514642766e-16!GO:0051186;cofactor metabolic process;1.78502605103633e-16!GO:0043285;biopolymer catabolic process;3.50153599669622e-16!GO:0005730;nucleolus;3.62307933499218e-16!GO:0050136;NADH dehydrogenase (quinone) activity;4.81019070827598e-16!GO:0003954;NADH dehydrogenase activity;4.81019070827598e-16!GO:0008137;NADH dehydrogenase (ubiquinone) activity;4.81019070827598e-16!GO:0005761;mitochondrial ribosome;5.02996636218328e-16!GO:0000313;organellar ribosome;5.02996636218328e-16!GO:0000166;nucleotide binding;1.95418066676196e-15!GO:0022618;protein-RNA complex assembly;1.98645724440151e-15!GO:0016874;ligase activity;2.6525415079062e-15!GO:0051082;unfolded protein binding;2.98056414735512e-15!GO:0048193;Golgi vesicle transport;5.86229421004333e-15!GO:0006512;ubiquitin cycle;6.26425067570636e-15!GO:0009057;macromolecule catabolic process;6.31887156652386e-15!GO:0044451;nucleoplasm part;6.42604495186072e-15!GO:0016192;vesicle-mediated transport;6.97518710576262e-15!GO:0006259;DNA metabolic process;7.28995368243976e-15!GO:0044265;cellular macromolecule catabolic process;1.28550116587835e-14!GO:0042775;organelle ATP synthesis coupled electron transport;1.46072841845788e-14!GO:0042773;ATP synthesis coupled electron transport;1.46072841845788e-14!GO:0030964;NADH dehydrogenase complex (quinone);2.51753330567838e-14!GO:0045271;respiratory chain complex I;2.51753330567838e-14!GO:0005747;mitochondrial respiratory chain complex I;2.51753330567838e-14!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.89465660555058e-14!GO:0006605;protein targeting;5.34923306782723e-14!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;8.57849881068406e-14!GO:0030163;protein catabolic process;9.51374704736252e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.00895846644805e-13!GO:0005789;endoplasmic reticulum membrane;1.36885200506076e-13!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.79722361166317e-13!GO:0051603;proteolysis involved in cellular protein catabolic process;1.89006572926935e-13!GO:0008135;translation factor activity, nucleic acid binding;1.91381216321044e-13!GO:0007049;cell cycle;1.96636908850812e-13!GO:0044248;cellular catabolic process;2.03593331762632e-13!GO:0019941;modification-dependent protein catabolic process;3.70928855112125e-13!GO:0043632;modification-dependent macromolecule catabolic process;3.70928855112125e-13!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);3.77726045406986e-13!GO:0006511;ubiquitin-dependent protein catabolic process;4.27986226183884e-13!GO:0044257;cellular protein catabolic process;4.98702301618077e-13!GO:0005793;ER-Golgi intermediate compartment;1.34282598610325e-12!GO:0006732;coenzyme metabolic process;1.9998589881415e-12!GO:0008134;transcription factor binding;2.81975229267012e-12!GO:0042254;ribosome biogenesis and assembly;5.00661569351241e-12!GO:0043412;biopolymer modification;8.72277122609157e-12!GO:0044431;Golgi apparatus part;9.41722699324876e-12!GO:0009259;ribonucleotide metabolic process;1.08391582513411e-11!GO:0009055;electron carrier activity;1.17005576296617e-11!GO:0000398;nuclear mRNA splicing, via spliceosome;1.31878461742337e-11!GO:0000375;RNA splicing, via transesterification reactions;1.31878461742337e-11!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;1.31878461742337e-11!GO:0006163;purine nucleotide metabolic process;3.4268735785077e-11!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;5.65895691102243e-11!GO:0005635;nuclear envelope;6.02206736182251e-11!GO:0009150;purine ribonucleotide metabolic process;6.35513171734463e-11!GO:0006464;protein modification process;9.24135337888883e-11!GO:0009199;ribonucleoside triphosphate metabolic process;9.83249553539109e-11!GO:0032553;ribonucleotide binding;1.05865970555577e-10!GO:0032555;purine ribonucleotide binding;1.05865970555577e-10!GO:0017076;purine nucleotide binding;1.23162577377073e-10!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.52825059868255e-10!GO:0009144;purine nucleoside triphosphate metabolic process;1.52825059868255e-10!GO:0003743;translation initiation factor activity;2.36096849733857e-10!GO:0009141;nucleoside triphosphate metabolic process;2.37418978633776e-10!GO:0009260;ribonucleotide biosynthetic process;2.58086718587536e-10!GO:0006164;purine nucleotide biosynthetic process;2.59802912847774e-10!GO:0009152;purine ribonucleotide biosynthetic process;4.69114387538775e-10!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;6.34558348080525e-10!GO:0008565;protein transporter activity;6.89752362609148e-10!GO:0022402;cell cycle process;8.01061548032088e-10!GO:0006413;translational initiation;1.03200344567594e-09!GO:0009142;nucleoside triphosphate biosynthetic process;1.21967344182175e-09!GO:0009201;ribonucleoside triphosphate biosynthetic process;1.21967344182175e-09!GO:0031965;nuclear membrane;1.26317305660169e-09!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;1.51818174957897e-09!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.90230654367912e-09!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.90230654367912e-09!GO:0015986;ATP synthesis coupled proton transport;2.3617556881669e-09!GO:0015985;energy coupled proton transport, down electrochemical gradient;2.3617556881669e-09!GO:0000139;Golgi membrane;2.42332388864406e-09!GO:0008639;small protein conjugating enzyme activity;2.44791885285102e-09!GO:0046034;ATP metabolic process;2.74906862970638e-09!GO:0006888;ER to Golgi vesicle-mediated transport;4.16673739732071e-09!GO:0009056;catabolic process;4.23505310343342e-09!GO:0048523;negative regulation of cellular process;4.37506130021215e-09!GO:0005788;endoplasmic reticulum lumen;4.43195992751914e-09!GO:0012501;programmed cell death;4.43285801240412e-09!GO:0006446;regulation of translational initiation;4.65273391269411e-09!GO:0019787;small conjugating protein ligase activity;4.7445048788302e-09!GO:0004842;ubiquitin-protein ligase activity;5.2754599853719e-09!GO:0005773;vacuole;5.87994224049945e-09!GO:0019829;cation-transporting ATPase activity;6.41185168782175e-09!GO:0006974;response to DNA damage stimulus;6.43153495422959e-09!GO:0015078;hydrogen ion transmembrane transporter activity;7.15500525583839e-09!GO:0044453;nuclear membrane part;7.21473632710236e-09!GO:0051188;cofactor biosynthetic process;7.28963388110261e-09!GO:0006915;apoptosis;7.52405488461656e-09!GO:0005768;endosome;1.09170206812411e-08!GO:0006461;protein complex assembly;1.27053940334024e-08!GO:0016491;oxidoreductase activity;1.59846067659526e-08!GO:0000278;mitotic cell cycle;1.70956071533557e-08!GO:0009060;aerobic respiration;1.83368211242498e-08!GO:0008219;cell death;1.96587170981307e-08!GO:0016265;death;1.96587170981307e-08!GO:0042623;ATPase activity, coupled;2.34653577011015e-08!GO:0043687;post-translational protein modification;2.41228720436125e-08!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.90354250997231e-08!GO:0031988;membrane-bound vesicle;2.9363075790848e-08!GO:0006754;ATP biosynthetic process;2.98702471639242e-08!GO:0006753;nucleoside phosphate metabolic process;2.98702471639242e-08!GO:0009117;nucleotide metabolic process;3.23291117161233e-08!GO:0016023;cytoplasmic membrane-bound vesicle;3.48532689647923e-08!GO:0016887;ATPase activity;3.70480791099083e-08!GO:0003676;nucleic acid binding;3.72997279426087e-08!GO:0005524;ATP binding;3.77718479545546e-08!GO:0003924;GTPase activity;4.28883275283178e-08!GO:0030120;vesicle coat;4.28883275283178e-08!GO:0030662;coated vesicle membrane;4.28883275283178e-08!GO:0006913;nucleocytoplasmic transport;4.32406137959517e-08!GO:0032559;adenyl ribonucleotide binding;4.42589583292721e-08!GO:0016881;acid-amino acid ligase activity;4.8947159280177e-08!GO:0003712;transcription cofactor activity;5.17015269263352e-08!GO:0045333;cellular respiration;5.29056510510208e-08!GO:0006399;tRNA metabolic process;5.63970668908356e-08!GO:0016469;proton-transporting two-sector ATPase complex;5.8703403373862e-08!GO:0048475;coated membrane;6.02617137380984e-08!GO:0030117;membrane coat;6.02617137380984e-08!GO:0030554;adenyl nucleotide binding;6.49654332398056e-08!GO:0048519;negative regulation of biological process;7.22549074878797e-08!GO:0031982;vesicle;7.86870177881818e-08!GO:0051169;nuclear transport;7.88694081471087e-08!GO:0031410;cytoplasmic vesicle;1.08006787976363e-07!GO:0000323;lytic vacuole;1.10655376391218e-07!GO:0005764;lysosome;1.10655376391218e-07!GO:0016604;nuclear body;1.15855102493393e-07!GO:0006364;rRNA processing;1.25619291478826e-07!GO:0016072;rRNA metabolic process;1.72995679697978e-07!GO:0065002;intracellular protein transport across a membrane;2.03150947237521e-07!GO:0017038;protein import;2.21914804837627e-07!GO:0000074;regulation of progression through cell cycle;2.60556118927917e-07!GO:0006916;anti-apoptosis;3.14582942082945e-07!GO:0051726;regulation of cell cycle;3.18043137368023e-07!GO:0007005;mitochondrion organization and biogenesis;3.43150261119395e-07!GO:0030532;small nuclear ribonucleoprotein complex;3.43150261119395e-07!GO:0009108;coenzyme biosynthetic process;3.46776309490439e-07!GO:0044440;endosomal part;5.02611405413205e-07!GO:0010008;endosome membrane;5.02611405413205e-07!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;5.11764069743128e-07!GO:0004812;aminoacyl-tRNA ligase activity;5.11764069743128e-07!GO:0016875;ligase activity, forming carbon-oxygen bonds;5.11764069743128e-07!GO:0006099;tricarboxylic acid cycle;7.06799982148223e-07!GO:0046356;acetyl-CoA catabolic process;7.06799982148223e-07!GO:0015077;monovalent inorganic cation transmembrane transporter activity;7.28092967891298e-07!GO:0043038;amino acid activation;8.26234598062902e-07!GO:0006418;tRNA aminoacylation for protein translation;8.26234598062902e-07!GO:0043039;tRNA aminoacylation;8.26234598062902e-07!GO:0005643;nuclear pore;8.26234598062902e-07!GO:0043069;negative regulation of programmed cell death;9.15173789756269e-07!GO:0016070;RNA metabolic process;9.37386384440683e-07!GO:0051187;cofactor catabolic process;9.51639849008148e-07!GO:0006281;DNA repair;1.05481508871468e-06!GO:0005839;proteasome core complex (sensu Eukaryota);1.17118793517167e-06!GO:0045259;proton-transporting ATP synthase complex;1.17417228280146e-06!GO:0016787;hydrolase activity;1.23228388944734e-06!GO:0043066;negative regulation of apoptosis;1.23274809617721e-06!GO:0042981;regulation of apoptosis;1.46897709863713e-06!GO:0051246;regulation of protein metabolic process;1.63138943749957e-06!GO:0005770;late endosome;1.77067199294638e-06!GO:0043067;regulation of programmed cell death;1.82212607530374e-06!GO:0016853;isomerase activity;2.09131524336737e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;2.19365124697278e-06!GO:0006084;acetyl-CoA metabolic process;2.33471774606862e-06!GO:0065004;protein-DNA complex assembly;2.9775394285015e-06!GO:0031252;leading edge;3.36489454054613e-06!GO:0032446;protein modification by small protein conjugation;3.81461361982041e-06!GO:0009719;response to endogenous stimulus;3.86061990466208e-06!GO:0016567;protein ubiquitination;4.32255534034186e-06!GO:0009109;coenzyme catabolic process;4.32756034972185e-06!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;4.65947419167382e-06!GO:0006260;DNA replication;4.65947419167382e-06!GO:0003697;single-stranded DNA binding;4.88010322443108e-06!GO:0045454;cell redox homeostasis;4.90795927324316e-06!GO:0006091;generation of precursor metabolites and energy;4.91431003289818e-06!GO:0016607;nuclear speck;5.13336501359813e-06!GO:0005694;chromosome;5.18346782008273e-06!GO:0016740;transferase activity;5.49770257896361e-06!GO:0006752;group transfer coenzyme metabolic process;5.54646819132639e-06!GO:0000087;M phase of mitotic cell cycle;5.65983797604456e-06!GO:0008654;phospholipid biosynthetic process;5.82447614863646e-06!GO:0008026;ATP-dependent helicase activity;6.2116816252954e-06!GO:0005762;mitochondrial large ribosomal subunit;6.32938259307612e-06!GO:0000315;organellar large ribosomal subunit;6.32938259307612e-06!GO:0006325;establishment and/or maintenance of chromatin architecture;6.53721375659724e-06!GO:0007067;mitosis;6.70319663884311e-06!GO:0004298;threonine endopeptidase activity;9.21828966079802e-06!GO:0005798;Golgi-associated vesicle;9.56516791764973e-06!GO:0051276;chromosome organization and biogenesis;1.03714565862619e-05!GO:0046930;pore complex;1.03714565862619e-05!GO:0051789;response to protein stimulus;1.03714565862619e-05!GO:0006986;response to unfolded protein;1.03714565862619e-05!GO:0000245;spliceosome assembly;1.06096524865514e-05!GO:0044427;chromosomal part;1.06096524865514e-05!GO:0006613;cotranslational protein targeting to membrane;1.41837464018637e-05!GO:0016859;cis-trans isomerase activity;1.467904083587e-05!GO:0043566;structure-specific DNA binding;1.49401118752255e-05!GO:0007249;I-kappaB kinase/NF-kappaB cascade;1.50724726884471e-05!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;1.50724726884471e-05!GO:0004386;helicase activity;1.57023930118561e-05!GO:0006323;DNA packaging;1.64383596741499e-05!GO:0030867;rough endoplasmic reticulum membrane;2.08711413890067e-05!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;2.10148083311386e-05!GO:0005525;GTP binding;2.62681859335367e-05!GO:0022403;cell cycle phase;2.86338604800418e-05!GO:0006403;RNA localization;3.97689709089879e-05!GO:0051301;cell division;3.98647896889678e-05!GO:0000314;organellar small ribosomal subunit;4.19638376499107e-05!GO:0005763;mitochondrial small ribosomal subunit;4.19638376499107e-05!GO:0006333;chromatin assembly or disassembly;4.33244104096381e-05!GO:0050657;nucleic acid transport;4.44382002658724e-05!GO:0051236;establishment of RNA localization;4.44382002658724e-05!GO:0050658;RNA transport;4.44382002658724e-05!GO:0000151;ubiquitin ligase complex;4.49456312991345e-05!GO:0031202;RNA splicing factor activity, transesterification mechanism;4.67028192618401e-05!GO:0045786;negative regulation of progression through cell cycle;4.86817623835828e-05!GO:0015980;energy derivation by oxidation of organic compounds;4.88283838150849e-05!GO:0015630;microtubule cytoskeleton;5.39163839007277e-05!GO:0005905;coated pit;6.60077086486064e-05!GO:0003714;transcription corepressor activity;8.20357036117098e-05!GO:0005048;signal sequence binding;8.49127025464193e-05!GO:0033116;ER-Golgi intermediate compartment membrane;0.000107702423800192!GO:0016779;nucleotidyltransferase activity;0.000111731911561841!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.000111834742207748!GO:0051170;nuclear import;0.000112684290937089!GO:0046474;glycerophospholipid biosynthetic process;0.000121716090391044!GO:0003724;RNA helicase activity;0.000122519867388538!GO:0031324;negative regulation of cellular metabolic process;0.000122519867388538!GO:0009165;nucleotide biosynthetic process;0.000124443798674677!GO:0006793;phosphorus metabolic process;0.000127380951752764!GO:0006796;phosphate metabolic process;0.000127380951752764!GO:0031968;organelle outer membrane;0.000128186819725481!GO:0043623;cellular protein complex assembly;0.000129483328043253!GO:0005769;early endosome;0.000129954687802315!GO:0006606;protein import into nucleus;0.000136361077438026!GO:0006366;transcription from RNA polymerase II promoter;0.000146008289101169!GO:0019867;outer membrane;0.000157374057859208!GO:0043021;ribonucleoprotein binding;0.000159495580586157!GO:0030133;transport vesicle;0.000162363304560691!GO:0016564;transcription repressor activity;0.000169267879038178!GO:0006334;nucleosome assembly;0.000169463434498294!GO:0032561;guanyl ribonucleotide binding;0.000189026252953342!GO:0019001;guanyl nucleotide binding;0.000189026252953342!GO:0044262;cellular carbohydrate metabolic process;0.000209041861129322!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.000221056264087449!GO:0006626;protein targeting to mitochondrion;0.000225611849399372!GO:0005791;rough endoplasmic reticulum;0.000235362092447074!GO:0030176;integral to endoplasmic reticulum membrane;0.000240076045942755!GO:0008361;regulation of cell size;0.00025521070367425!GO:0008250;oligosaccharyl transferase complex;0.000258911543718434!GO:0016049;cell growth;0.000266021015489931!GO:0048471;perinuclear region of cytoplasm;0.000269376942634973!GO:0009892;negative regulation of metabolic process;0.000288582669292966!GO:0004576;oligosaccharyl transferase activity;0.000293222024259388!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.000299598046569702!GO:0015399;primary active transmembrane transporter activity;0.000299598046569702!GO:0006612;protein targeting to membrane;0.000341782800119754!GO:0016310;phosphorylation;0.00034428343372283!GO:0000785;chromatin;0.000375675703241208!GO:0005885;Arp2/3 protein complex;0.000377530927000531!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000383889435738268!GO:0030663;COPI coated vesicle membrane;0.000401084282924645!GO:0030126;COPI vesicle coat;0.000401084282924645!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000401262807850779!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.000422075726254821!GO:0005667;transcription factor complex;0.000481982132514581!GO:0031497;chromatin assembly;0.000499113108051763!GO:0018196;peptidyl-asparagine modification;0.000557865689262018!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.000557865689262018!GO:0003899;DNA-directed RNA polymerase activity;0.000609250022574919!GO:0051427;hormone receptor binding;0.000616848662589107!GO:0022890;inorganic cation transmembrane transporter activity;0.000661445444693441!GO:0046467;membrane lipid biosynthetic process;0.00067944379825666!GO:0006839;mitochondrial transport;0.00067994536427375!GO:0051920;peroxiredoxin activity;0.000718116130961058!GO:0007010;cytoskeleton organization and biogenesis;0.000730641430160352!GO:0051028;mRNA transport;0.000746170320978168!GO:0043681;protein import into mitochondrion;0.000779026944095889!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.0007871386361358!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000799859432059539!GO:0046489;phosphoinositide biosynthetic process;0.000850696712664603!GO:0043284;biopolymer biosynthetic process;0.000851480074481904!GO:0000279;M phase;0.000851480074481904!GO:0005741;mitochondrial outer membrane;0.000857477194589062!GO:0030137;COPI-coated vesicle;0.00088018075926019!GO:0003713;transcription coactivator activity;0.000909099531388193!GO:0001558;regulation of cell growth;0.000936456288550606!GO:0019843;rRNA binding;0.000947669437120698!GO:0005813;centrosome;0.000959947544730505!GO:0045045;secretory pathway;0.00107544846671059!GO:0035257;nuclear hormone receptor binding;0.00118775182317869!GO:0016563;transcription activator activity;0.00127024202624633!GO:0006891;intra-Golgi vesicle-mediated transport;0.0012940134225582!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00132759787780224!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00137383711679744!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00137383711679744!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00137383711679744!GO:0030036;actin cytoskeleton organization and biogenesis;0.00138996116938556!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.0014271055542079!GO:0007033;vacuole organization and biogenesis;0.00148305982806776!GO:0051287;NAD binding;0.00156437048131741!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0017483210344818!GO:0006414;translational elongation;0.00179083326993614!GO:0051045;negative regulation of membrane protein ectodomain proteolysis;0.00185875824681364!GO:0051043;regulation of membrane protein ectodomain proteolysis;0.00185875824681364!GO:0005815;microtubule organizing center;0.00186512435427258!GO:0051252;regulation of RNA metabolic process;0.00187325378200807!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00199821073579479!GO:0007243;protein kinase cascade;0.00202558355201207!GO:0006650;glycerophospholipid metabolic process;0.0020637325466566!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00214566413840181!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00214566413840181!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00226569617967454!GO:0048500;signal recognition particle;0.00236727049961286!GO:0006383;transcription from RNA polymerase III promoter;0.00255176183219481!GO:0008610;lipid biosynthetic process;0.00264870134992202!GO:0008180;signalosome;0.00264870134992202!GO:0008632;apoptotic program;0.00268300896830358!GO:0008186;RNA-dependent ATPase activity;0.00279701099207998!GO:0042802;identical protein binding;0.00279964566365089!GO:0046483;heterocycle metabolic process;0.00284268620848594!GO:0016568;chromatin modification;0.00290218271638405!GO:0007040;lysosome organization and biogenesis;0.00304423693906626!GO:0030134;ER to Golgi transport vesicle;0.00307106679586178!GO:0050794;regulation of cellular process;0.00307106679586178!GO:0016044;membrane organization and biogenesis;0.00307106679586178!GO:0008092;cytoskeletal protein binding;0.00335825611730227!GO:0030658;transport vesicle membrane;0.00336114167274892!GO:0043492;ATPase activity, coupled to movement of substances;0.00340162007941483!GO:0030880;RNA polymerase complex;0.00362329525729602!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00373193530406428!GO:0015002;heme-copper terminal oxidase activity;0.00373193530406428!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00373193530406428!GO:0004129;cytochrome-c oxidase activity;0.00373193530406428!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00378196985609956!GO:0015992;proton transport;0.00382863441357927!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0038566207303538!GO:0005869;dynactin complex;0.00389283053297255!GO:0019899;enzyme binding;0.00390145884473618!GO:0003729;mRNA binding;0.00395893264165013!GO:0030118;clathrin coat;0.00400969313846604!GO:0007006;mitochondrial membrane organization and biogenesis;0.00402067852839883!GO:0006818;hydrogen transport;0.00410456825596728!GO:0005774;vacuolar membrane;0.00415439751767983!GO:0008243;plasminogen activator activity;0.00429323645287012!GO:0030659;cytoplasmic vesicle membrane;0.00429475646588989!GO:0001726;ruffle;0.00451986100715534!GO:0004177;aminopeptidase activity;0.00456137574700479!GO:0065009;regulation of a molecular function;0.00463991326760091!GO:0016481;negative regulation of transcription;0.00477559700649077!GO:0030132;clathrin coat of coated pit;0.00478304520538996!GO:0044452;nucleolar part;0.00484569487082505!GO:0031902;late endosome membrane;0.00494831088309549!GO:0051087;chaperone binding;0.00503551290364925!GO:0030027;lamellipodium;0.00506089893021455!GO:0032940;secretion by cell;0.00509162018893808!GO:0016197;endosome transport;0.00509162018893808!GO:0048487;beta-tubulin binding;0.00519395136887124!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.00523596204053573!GO:0017166;vinculin binding;0.00529617103761873!GO:0006497;protein amino acid lipidation;0.00530817319152099!GO:0006595;polyamine metabolic process;0.00532108026497216!GO:0006509;membrane protein ectodomain proteolysis;0.00532108026497216!GO:0033619;membrane protein proteolysis;0.00532108026497216!GO:0051168;nuclear export;0.00534304534826477!GO:0043488;regulation of mRNA stability;0.0053878444323911!GO:0043487;regulation of RNA stability;0.0053878444323911!GO:0005684;U2-dependent spliceosome;0.00546398452525596!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00570881069805617!GO:0045047;protein targeting to ER;0.00570881069805617!GO:0051329;interphase of mitotic cell cycle;0.005726767479931!GO:0030127;COPII vesicle coat;0.00574063673458893!GO:0012507;ER to Golgi transport vesicle membrane;0.00574063673458893!GO:0044433;cytoplasmic vesicle part;0.00585631720035539!GO:0009116;nucleoside metabolic process;0.00605810789790958!GO:0030029;actin filament-based process;0.00628302581421976!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00629359157103732!GO:0004004;ATP-dependent RNA helicase activity;0.00637993591441415!GO:0031072;heat shock protein binding;0.00637993591441415!GO:0007050;cell cycle arrest;0.00641355634776927!GO:0008312;7S RNA binding;0.00649836302108815!GO:0000059;protein import into nucleus, docking;0.00656600079606105!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.00656840898471076!GO:0007264;small GTPase mediated signal transduction;0.00668661650161501!GO:0031301;integral to organelle membrane;0.00676214576177571!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00689615128991463!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.00695899364731016!GO:0030384;phosphoinositide metabolic process;0.00705166631300982!GO:0005819;spindle;0.00715436371364601!GO:0031901;early endosome membrane;0.00725539757104219!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.00726776431930091!GO:0003711;transcription elongation regulator activity;0.00732218527765237!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00732218527765237!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00758912970780753!GO:0000428;DNA-directed RNA polymerase complex;0.00758912970780753!GO:0050662;coenzyme binding;0.00760327017533562!GO:0016363;nuclear matrix;0.00765633220341279!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.00772900239139367!GO:0019205;nucleobase, nucleoside, nucleotide kinase activity;0.00799461012151336!GO:0003746;translation elongation factor activity;0.00824799962732056!GO:0012506;vesicle membrane;0.00874399029330485!GO:0008139;nuclear localization sequence binding;0.00892791882083264!GO:0042158;lipoprotein biosynthetic process;0.00901494703162996!GO:0030660;Golgi-associated vesicle membrane;0.0090563432933579!GO:0031418;L-ascorbic acid binding;0.00910885373239213!GO:0030119;AP-type membrane coat adaptor complex;0.00912790090914171!GO:0006984;ER-nuclear signaling pathway;0.00922014453943097!GO:0006778;porphyrin metabolic process;0.00937006038536503!GO:0033013;tetrapyrrole metabolic process;0.00937006038536503!GO:0009112;nucleobase metabolic process;0.00958858210586777!GO:0016272;prefoldin complex;0.00958858210586777!GO:0005862;muscle thin filament tropomyosin;0.00963228573834815!GO:0030984;kininogen binding;0.0100521123007636!GO:0004213;cathepsin B activity;0.0100521123007636!GO:0044437;vacuolar part;0.0102907846022695!GO:0006506;GPI anchor biosynthetic process;0.0104816578868451!GO:0031124;mRNA 3'-end processing;0.0106892105911622!GO:0006979;response to oxidative stress;0.0107073252357637!GO:0006354;RNA elongation;0.0110841266453184!GO:0033673;negative regulation of kinase activity;0.0110841266453184!GO:0006469;negative regulation of protein kinase activity;0.0110841266453184!GO:0051325;interphase;0.0110862774488175!GO:0003684;damaged DNA binding;0.01119211877661!GO:0008033;tRNA processing;0.0112647502807274!GO:0042168;heme metabolic process;0.0113359691717105!GO:0000339;RNA cap binding;0.0114260610480566!GO:0008154;actin polymerization and/or depolymerization;0.0114414249355904!GO:0048522;positive regulation of cellular process;0.0114414249355904!GO:0005657;replication fork;0.0116661398362318!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0119248164009602!GO:0016126;sterol biosynthetic process;0.0121475522533135!GO:0030503;regulation of cell redox homeostasis;0.0123826655197359!GO:0015631;tubulin binding;0.0124344649621191!GO:0051128;regulation of cellular component organization and biogenesis;0.0127919307853341!GO:0006740;NADPH regeneration;0.0133301530488394!GO:0006098;pentose-phosphate shunt;0.0133301530488394!GO:0005765;lysosomal membrane;0.0140011115046665!GO:0008047;enzyme activator activity;0.0140094760043322!GO:0043022;ribosome binding;0.0142229847545839!GO:0016408;C-acyltransferase activity;0.0142776601496989!GO:0016667;oxidoreductase activity, acting on sulfur group of donors;0.0143550575235836!GO:0007021;tubulin folding;0.0148431599577242!GO:0031970;organelle envelope lumen;0.0149682860834337!GO:0006402;mRNA catabolic process;0.0149682860834337!GO:0006505;GPI anchor metabolic process;0.0158426507848389!GO:0030131;clathrin adaptor complex;0.0158514281799747!GO:0006401;RNA catabolic process;0.0158514281799747!GO:0030032;lamellipodium biogenesis;0.0160839036608008!GO:0019206;nucleoside kinase activity;0.0161291295667829!GO:0005832;chaperonin-containing T-complex;0.0167259489324862!GO:0050811;GABA receptor binding;0.0168132685457093!GO:0006261;DNA-dependent DNA replication;0.0172338091168475!GO:0051348;negative regulation of transferase activity;0.0174130139725462!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0181618807344291!GO:0007034;vacuolar transport;0.0187817510016941!GO:0006643;membrane lipid metabolic process;0.0188082959323158!GO:0003690;double-stranded DNA binding;0.0188661119055873!GO:0030125;clathrin vesicle coat;0.0193506624523498!GO:0030665;clathrin coated vesicle membrane;0.0193506624523498!GO:0000030;mannosyltransferase activity;0.0196457676384763!GO:0031529;ruffle organization and biogenesis;0.0201264008958778!GO:0051540;metal cluster binding;0.0204554526825778!GO:0051536;iron-sulfur cluster binding;0.0204554526825778!GO:0048468;cell development;0.0204988761147012!GO:0030145;manganese ion binding;0.0206915342218633!GO:0040008;regulation of growth;0.0209166585140881!GO:0007051;spindle organization and biogenesis;0.0211247821927083!GO:0006368;RNA elongation from RNA polymerase II promoter;0.021366615095439!GO:0000209;protein polyubiquitination;0.0216212674427576!GO:0006892;post-Golgi vesicle-mediated transport;0.0219582096595471!GO:0035258;steroid hormone receptor binding;0.02211075453493!GO:0003756;protein disulfide isomerase activity;0.0222863167522217!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0222863167522217!GO:0008168;methyltransferase activity;0.0223947503802873!GO:0003923;GPI-anchor transamidase activity;0.0229379472842421!GO:0016255;attachment of GPI anchor to protein;0.0229379472842421!GO:0042765;GPI-anchor transamidase complex;0.0229379472842421!GO:0006220;pyrimidine nucleotide metabolic process;0.0234587850176618!GO:0009119;ribonucleoside metabolic process;0.023732117578785!GO:0006611;protein export from nucleus;0.0241581935579249!GO:0046519;sphingoid metabolic process;0.0244239428131336!GO:0031543;peptidyl-proline dioxygenase activity;0.0245562305739704!GO:0006695;cholesterol biosynthetic process;0.0245624759440491!GO:0000096;sulfur amino acid metabolic process;0.0247217654828906!GO:0050789;regulation of biological process;0.0247880099144864!GO:0016741;transferase activity, transferring one-carbon groups;0.0252323520878029!GO:0001527;microfibril;0.0253409091141168!GO:0009967;positive regulation of signal transduction;0.0257459918027587!GO:0019798;procollagen-proline dioxygenase activity;0.0258258093483761!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0258716701054682!GO:0033043;regulation of organelle organization and biogenesis;0.0258716701054682!GO:0006672;ceramide metabolic process;0.0263620095995087!GO:0005874;microtubule;0.0265882297797298!GO:0006733;oxidoreduction coenzyme metabolic process;0.0265954557240077!GO:0005758;mitochondrial intermembrane space;0.0273358451975782!GO:0045792;negative regulation of cell size;0.027439163459351!GO:0005801;cis-Golgi network;0.0277361263396352!GO:0000049;tRNA binding;0.0280609397002236!GO:0008601;protein phosphatase type 2A regulator activity;0.0284739579846838!GO:0008022;protein C-terminus binding;0.0291501984461958!GO:0008147;structural constituent of bone;0.0291945688671799!GO:0006118;electron transport;0.0293628884990328!GO:0022406;membrane docking;0.0297871194589209!GO:0048278;vesicle docking;0.0297871194589209!GO:0006289;nucleotide-excision repair;0.0311279444655346!GO:0006769;nicotinamide metabolic process;0.0311718947841747!GO:0030041;actin filament polymerization;0.0312675219900504!GO:0030308;negative regulation of cell growth;0.0319475216043522!GO:0006144;purine base metabolic process;0.0321108964573423!GO:0008064;regulation of actin polymerization and/or depolymerization;0.0336053542834036!GO:0000075;cell cycle checkpoint;0.0339843114644938!GO:0030508;thiol-disulfide exchange intermediate activity;0.0347481619279052!GO:0008538;proteasome activator activity;0.0348679067525097!GO:0031371;ubiquitin conjugating enzyme complex;0.0353702331435575!GO:0022411;cellular component disassembly;0.0353959477810581!GO:0043624;cellular protein complex disassembly;0.0353959477810581!GO:0006458;'de novo' protein folding;0.0354205179237335!GO:0051084;'de novo' posttranslational protein folding;0.0354205179237335!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.035422175582235!GO:0043433;negative regulation of transcription factor activity;0.035525190908017!GO:0006904;vesicle docking during exocytosis;0.0358863300481792!GO:0008320;protein transmembrane transporter activity;0.0360248317610993!GO:0032984;macromolecular complex disassembly;0.036303650784839!GO:0007041;lysosomal transport;0.0363667182595969!GO:0006352;transcription initiation;0.0364101840419991!GO:0006378;mRNA polyadenylation;0.0370263847225861!GO:0000159;protein phosphatase type 2A complex;0.0370999747812621!GO:0030911;TPR domain binding;0.0378516121542114!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0379058428004986!GO:0000776;kinetochore;0.0382915224430363!GO:0005975;carbohydrate metabolic process;0.038526472667888!GO:0006779;porphyrin biosynthetic process;0.0386003983626029!GO:0033014;tetrapyrrole biosynthetic process;0.0386003983626029!GO:0000082;G1/S transition of mitotic cell cycle;0.0390883895269603!GO:0007179;transforming growth factor beta receptor signaling pathway;0.0391087915488322!GO:0046426;negative regulation of JAK-STAT cascade;0.0394727213279533!GO:0006767;water-soluble vitamin metabolic process;0.0400443844366471!GO:0006007;glucose catabolic process;0.0408515103046341!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0410855991942629!GO:0022408;negative regulation of cell-cell adhesion;0.0411363587779839!GO:0005637;nuclear inner membrane;0.0411363587779839!GO:0031123;RNA 3'-end processing;0.0413475352963155!GO:0031625;ubiquitin protein ligase binding;0.0415902214336454!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.0417396433490327!GO:0030521;androgen receptor signaling pathway;0.0421590177925666!GO:0030433;ER-associated protein catabolic process;0.0429066338222297!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0429066338222297!GO:0050790;regulation of catalytic activity;0.0433063672550274!GO:0006897;endocytosis;0.0434437840882949!GO:0010324;membrane invagination;0.0434437840882949!GO:0030149;sphingolipid catabolic process;0.0438942912117028!GO:0006302;double-strand break repair;0.0450531920686814!GO:0051101;regulation of DNA binding;0.0452344156360931!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.0460120589126502!GO:0035035;histone acetyltransferase binding;0.0473513106313329!GO:0045936;negative regulation of phosphate metabolic process;0.0476311647407915!GO:0005784;translocon complex;0.0476836172636948!GO:0006783;heme biosynthetic process;0.0476836172636948!GO:0043126;regulation of 1-phosphatidylinositol 4-kinase activity;0.04784004990089!GO:0046813;virion attachment, binding of host cell surface receptor;0.04784004990089!GO:0043128;positive regulation of 1-phosphatidylinositol 4-kinase activity;0.04784004990089!GO:0051539;4 iron, 4 sulfur cluster binding;0.0484068206753064!GO:0006518;peptide metabolic process;0.0485572603118113!GO:0006376;mRNA splice site selection;0.0498322601002259!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0498322601002259 | |||
|sample_id=10571 | |sample_id=10571 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 99: | ||
|sample_tissue=uterus | |sample_tissue=uterus | ||
|top_motifs=ALX4:2.42969087505;UFEwm:2.32288555903;GCM1,2:1.89672317179;NR1H4:1.88449861668;ZIC1..3:1.86129216636;PPARG:1.82517544446;ESR1:1.72068822763;CDC5L:1.68425431673;KLF4:1.68371941464;HSF1,2:1.68222879975;EN1,2:1.62596621742;NKX2-2,8:1.56773638643;GZF1:1.55122173736;NFE2L1:1.53088054997;NKX3-1:1.51882291584;ZBTB6:1.50624615654;NR3C1:1.42889709808;HOX{A4,D4}:1.41233907387;RXR{A,B,G}:1.30547646199;ZNF238:1.27284877334;XBP1:1.21350690293;TBX4,5:1.1421010979;HMX1:1.05866706865;HES1:1.05218236136;ARID5B:1.0447786045;TLX1..3_NFIC{dimer}:0.969148553023;RXRA_VDR{dimer}:0.964152070585;SMAD1..7,9:0.94938085499;TFAP4:0.926281350486;POU3F1..4:0.896201279036;MAFB:0.880432718593;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.858981050436;SPZ1:0.844389981197;POU6F1:0.789821236297;NKX3-2:0.775013893653;ESRRA:0.755875819896;MYFfamily:0.754023237827;HOX{A5,B5}:0.742724005849;ATF6:0.709245547236;IKZF1:0.69656126563;GLI1..3:0.69553466623;TFCP2:0.645979425418;NKX6-1,2:0.613303841104;HAND1,2:0.60609161179;SRF:0.600565984109;PRDM1:0.598948720324;TEAD1:0.550070201694;GATA4:0.534708722399;NANOG{mouse}:0.530033963987;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.520328773131;GFI1B:0.518575718691;TBP:0.514166977449;NFIX:0.464216665374;TP53:0.459546518704;YY1:0.434422373234;NFE2L2:0.404120447245;PDX1:0.385654190117;ALX1:0.379278748586;MYBL2:0.360112445061;BACH2:0.351930989796;ONECUT1,2:0.335131258297;EBF1:0.319178677278;CDX1,2,4:0.313854041094;CRX:0.292956855264;PAX4:0.284582601432;LMO2:0.281594297972;GTF2I:0.271583496392;HIC1:0.255069538691;EVI1:0.251888431573;TAL1_TCF{3,4,12}:0.222981665099;PAX5:0.2229209209;MTE{core}:0.222178183262;TEF:0.219515796785;FOS_FOS{B,L1}_JUN{B,D}:0.20498970105;AIRE:0.18292395324;FOXD3:0.180185390347;ELK1,4_GABP{A,B1}:0.175915775795;GFI1:0.175533368526;ZNF148:0.158532193181;MZF1:0.153986007103;PBX1:0.144556168926;FOSL2:0.143192929029;TOPORS:0.13725636901;FOXM1:0.0922334996731;ZNF423:0.0792692684324;ZBTB16:0.0751695723366;PATZ1:0.0550116756065;GTF2A1,2:0.0530786596884;TFAP2{A,C}:0.0391305119537;RFX1:-0.00086749320932;NKX2-1,4:-0.00602621957209;T:-0.0228265555645;HNF1A:-0.0239031725996;NR6A1:-0.0323192148184;HLF:-0.0428466115284;REST:-0.0575505681696;NRF1:-0.0880336296415;NFATC1..3:-0.0974914540894;XCPE1{core}:-0.100727856332;HOXA9_MEIS1:-0.101208059697;NR5A1,2:-0.138646136478;bHLH_family:-0.138721677489;EGR1..3:-0.141849341148;AR:-0.149646135043;LHX3,4:-0.152145715656;MAZ:-0.165866068373;NHLH1,2:-0.190365527492;HMGA1,2:-0.194494026287;DBP:-0.199771826919;PAX6:-0.235194916865;TFAP2B:-0.252164535794;ZNF384:-0.255876189959;SREBF1,2:-0.256438734982;JUN:-0.277010748993;FOXL1:-0.287894540383;NFE2:-0.290149575435;DMAP1_NCOR{1,2}_SMARC:-0.303567362762;PAX1,9:-0.313448480951;RFX2..5_RFXANK_RFXAP:-0.326315564887;RREB1:-0.327198754861;ZNF143:-0.349474212999;CEBPA,B_DDIT3:-0.369957855448;HOX{A6,A7,B6,B7}:-0.380335792514;PAX3,7:-0.400182218478;HNF4A_NR2F1,2:-0.415694681109;TGIF1:-0.432685703221;RUNX1..3:-0.434020951434;ZFP161:-0.438241263482;SPI1:-0.460732057272;IRF1,2:-0.49568663683;FOX{I1,J2}:-0.496157079492;NFKB1_REL_RELA:-0.513629184075;LEF1_TCF7_TCF7L1,2:-0.52015742875;SOX17:-0.522487805798;FOXN1:-0.533731407249;MYB:-0.550708656006;E2F1..5:-0.551661740527;PAX2:-0.568129319586;PAX8:-0.577544718424;SP1:-0.578714532214;FOXO1,3,4:-0.585587602433;SOX5:-0.595360113984;HBP1_HMGB_SSRP1_UBTF:-0.597231921934;MTF1:-0.598744047207;AHR_ARNT_ARNT2:-0.601472664419;PRRX1,2:-0.622504780978;MED-1{core}:-0.626770888315;OCT4_SOX2{dimer}:-0.626820837641;NKX2-3_NKX2-5:-0.64004031102;STAT2,4,6:-0.649065097868;SNAI1..3:-0.651610666125;SPIB:-0.660364121356;FOXP3:-0.666488860748;ETS1,2:-0.707001552699;MEF2{A,B,C,D}:-0.728567087738;NFIL3:-0.728862168815;CREB1:-0.732778737835;IRF7:-0.755293493025;ATF2:-0.757834882391;VSX1,2:-0.758758112376;NANOG:-0.791438835848;HIF1A:-0.809178585958;IKZF2:-0.812166075401;ELF1,2,4:-0.815513273704;SOX2:-0.841171717727;FOX{D1,D2}:-0.84619388766;NFY{A,B,C}:-0.879580165605;MYOD1:-0.89468957909;GATA6:-0.89708432844;ZEB1:-0.996946733147;ATF5_CREB3:-1.00814748028;TFDP1:-1.01001551778;POU5F1:-1.02087074853;STAT5{A,B}:-1.03073787462;TLX2:-1.08363871561;ATF4:-1.11390192587;POU1F1:-1.16949466403;BREu{core}:-1.22428910063;FOXQ1:-1.24183128649;FOXP1:-1.25070233871;PITX1..3:-1.2537911716;CUX2:-1.27417042236;EP300:-1.31933457234;STAT1,3:-1.36007748689;SOX{8,9,10}:-1.37037121358;BPTF:-1.39426137823;POU2F1..3:-1.48893445639;RORA:-1.62939761267;ADNP_IRX_SIX_ZHX:-1.70180523989;FOX{F1,F2,J1}:-1.75039566092;FOXA2:-2.15687273058;RBPJ:-2.18581182609 | |top_motifs=ALX4:2.42969087505;UFEwm:2.32288555903;GCM1,2:1.89672317179;NR1H4:1.88449861668;ZIC1..3:1.86129216636;PPARG:1.82517544446;ESR1:1.72068822763;CDC5L:1.68425431673;KLF4:1.68371941464;HSF1,2:1.68222879975;EN1,2:1.62596621742;NKX2-2,8:1.56773638643;GZF1:1.55122173736;NFE2L1:1.53088054997;NKX3-1:1.51882291584;ZBTB6:1.50624615654;NR3C1:1.42889709808;HOX{A4,D4}:1.41233907387;RXR{A,B,G}:1.30547646199;ZNF238:1.27284877334;XBP1:1.21350690293;TBX4,5:1.1421010979;HMX1:1.05866706865;HES1:1.05218236136;ARID5B:1.0447786045;TLX1..3_NFIC{dimer}:0.969148553023;RXRA_VDR{dimer}:0.964152070585;SMAD1..7,9:0.94938085499;TFAP4:0.926281350486;POU3F1..4:0.896201279036;MAFB:0.880432718593;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.858981050436;SPZ1:0.844389981197;POU6F1:0.789821236297;NKX3-2:0.775013893653;ESRRA:0.755875819896;MYFfamily:0.754023237827;HOX{A5,B5}:0.742724005849;ATF6:0.709245547236;IKZF1:0.69656126563;GLI1..3:0.69553466623;TFCP2:0.645979425418;NKX6-1,2:0.613303841104;HAND1,2:0.60609161179;SRF:0.600565984109;PRDM1:0.598948720324;TEAD1:0.550070201694;GATA4:0.534708722399;NANOG{mouse}:0.530033963987;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.520328773131;GFI1B:0.518575718691;TBP:0.514166977449;NFIX:0.464216665374;TP53:0.459546518704;YY1:0.434422373234;NFE2L2:0.404120447245;PDX1:0.385654190117;ALX1:0.379278748586;MYBL2:0.360112445061;BACH2:0.351930989796;ONECUT1,2:0.335131258297;EBF1:0.319178677278;CDX1,2,4:0.313854041094;CRX:0.292956855264;PAX4:0.284582601432;LMO2:0.281594297972;GTF2I:0.271583496392;HIC1:0.255069538691;EVI1:0.251888431573;TAL1_TCF{3,4,12}:0.222981665099;PAX5:0.2229209209;MTE{core}:0.222178183262;TEF:0.219515796785;FOS_FOS{B,L1}_JUN{B,D}:0.20498970105;AIRE:0.18292395324;FOXD3:0.180185390347;ELK1,4_GABP{A,B1}:0.175915775795;GFI1:0.175533368526;ZNF148:0.158532193181;MZF1:0.153986007103;PBX1:0.144556168926;FOSL2:0.143192929029;TOPORS:0.13725636901;FOXM1:0.0922334996731;ZNF423:0.0792692684324;ZBTB16:0.0751695723366;PATZ1:0.0550116756065;GTF2A1,2:0.0530786596884;TFAP2{A,C}:0.0391305119537;RFX1:-0.00086749320932;NKX2-1,4:-0.00602621957209;T:-0.0228265555645;HNF1A:-0.0239031725996;NR6A1:-0.0323192148184;HLF:-0.0428466115284;REST:-0.0575505681696;NRF1:-0.0880336296415;NFATC1..3:-0.0974914540894;XCPE1{core}:-0.100727856332;HOXA9_MEIS1:-0.101208059697;NR5A1,2:-0.138646136478;bHLH_family:-0.138721677489;EGR1..3:-0.141849341148;AR:-0.149646135043;LHX3,4:-0.152145715656;MAZ:-0.165866068373;NHLH1,2:-0.190365527492;HMGA1,2:-0.194494026287;DBP:-0.199771826919;PAX6:-0.235194916865;TFAP2B:-0.252164535794;ZNF384:-0.255876189959;SREBF1,2:-0.256438734982;JUN:-0.277010748993;FOXL1:-0.287894540383;NFE2:-0.290149575435;DMAP1_NCOR{1,2}_SMARC:-0.303567362762;PAX1,9:-0.313448480951;RFX2..5_RFXANK_RFXAP:-0.326315564887;RREB1:-0.327198754861;ZNF143:-0.349474212999;CEBPA,B_DDIT3:-0.369957855448;HOX{A6,A7,B6,B7}:-0.380335792514;PAX3,7:-0.400182218478;HNF4A_NR2F1,2:-0.415694681109;TGIF1:-0.432685703221;RUNX1..3:-0.434020951434;ZFP161:-0.438241263482;SPI1:-0.460732057272;IRF1,2:-0.49568663683;FOX{I1,J2}:-0.496157079492;NFKB1_REL_RELA:-0.513629184075;LEF1_TCF7_TCF7L1,2:-0.52015742875;SOX17:-0.522487805798;FOXN1:-0.533731407249;MYB:-0.550708656006;E2F1..5:-0.551661740527;PAX2:-0.568129319586;PAX8:-0.577544718424;SP1:-0.578714532214;FOXO1,3,4:-0.585587602433;SOX5:-0.595360113984;HBP1_HMGB_SSRP1_UBTF:-0.597231921934;MTF1:-0.598744047207;AHR_ARNT_ARNT2:-0.601472664419;PRRX1,2:-0.622504780978;MED-1{core}:-0.626770888315;OCT4_SOX2{dimer}:-0.626820837641;NKX2-3_NKX2-5:-0.64004031102;STAT2,4,6:-0.649065097868;SNAI1..3:-0.651610666125;SPIB:-0.660364121356;FOXP3:-0.666488860748;ETS1,2:-0.707001552699;MEF2{A,B,C,D}:-0.728567087738;NFIL3:-0.728862168815;CREB1:-0.732778737835;IRF7:-0.755293493025;ATF2:-0.757834882391;VSX1,2:-0.758758112376;NANOG:-0.791438835848;HIF1A:-0.809178585958;IKZF2:-0.812166075401;ELF1,2,4:-0.815513273704;SOX2:-0.841171717727;FOX{D1,D2}:-0.84619388766;NFY{A,B,C}:-0.879580165605;MYOD1:-0.89468957909;GATA6:-0.89708432844;ZEB1:-0.996946733147;ATF5_CREB3:-1.00814748028;TFDP1:-1.01001551778;POU5F1:-1.02087074853;STAT5{A,B}:-1.03073787462;TLX2:-1.08363871561;ATF4:-1.11390192587;POU1F1:-1.16949466403;BREu{core}:-1.22428910063;FOXQ1:-1.24183128649;FOXP1:-1.25070233871;PITX1..3:-1.2537911716;CUX2:-1.27417042236;EP300:-1.31933457234;STAT1,3:-1.36007748689;SOX{8,9,10}:-1.37037121358;BPTF:-1.39426137823;POU2F1..3:-1.48893445639;RORA:-1.62939761267;ADNP_IRX_SIX_ZHX:-1.70180523989;FOX{F1,F2,J1}:-1.75039566092;FOXA2:-2.15687273058;RBPJ:-2.18581182609 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10571-108B4;search_select_hide=table117:FF:10571-108B4 | |||
}} | }} | ||
Latest revision as of 14:29, 3 June 2020
| Name: | leiomyoma cell line:15425 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11724 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11724
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11724
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.212 |
| 10 | 10 | 0.384 |
| 100 | 100 | 0.586 |
| 101 | 101 | 0.628 |
| 102 | 102 | 0.662 |
| 103 | 103 | 0.0993 |
| 104 | 104 | 0.927 |
| 105 | 105 | 0.0723 |
| 106 | 106 | 0.135 |
| 107 | 107 | 0.0448 |
| 108 | 108 | 0.289 |
| 109 | 109 | 0.143 |
| 11 | 11 | 0.124 |
| 110 | 110 | 0.199 |
| 111 | 111 | 0.83 |
| 112 | 112 | 0.193 |
| 113 | 113 | 0.0314 |
| 114 | 114 | 0.0723 |
| 115 | 115 | 0.00422 |
| 116 | 116 | 0.0652 |
| 117 | 117 | 0.575 |
| 118 | 118 | 0.415 |
| 119 | 119 | 0.485 |
| 12 | 12 | 0.34 |
| 120 | 120 | 0.052 |
| 121 | 121 | 0.296 |
| 122 | 122 | 0.149 |
| 123 | 123 | 0.0179 |
| 124 | 124 | 0.971 |
| 125 | 125 | 0.0784 |
| 126 | 126 | 0.942 |
| 127 | 127 | 0.97 |
| 128 | 128 | 0.191 |
| 129 | 129 | 0.579 |
| 13 | 13 | 0.881 |
| 130 | 130 | 0.468 |
| 131 | 131 | 0.648 |
| 132 | 132 | 0.661 |
| 133 | 133 | 0.569 |
| 134 | 134 | 0.295 |
| 135 | 135 | 0.702 |
| 136 | 136 | 0.276 |
| 137 | 137 | 0.496 |
| 138 | 138 | 0.668 |
| 139 | 139 | 0.634 |
| 14 | 14 | 0.477 |
| 140 | 140 | 0.585 |
| 141 | 141 | 0.561 |
| 142 | 142 | 0.794 |
| 143 | 143 | 0.147 |
| 144 | 144 | 0.298 |
| 145 | 145 | 0.503 |
| 146 | 146 | 0.382 |
| 147 | 147 | 0.113 |
| 148 | 148 | 0.15 |
| 149 | 149 | 0.00105 |
| 15 | 15 | 0.858 |
| 150 | 150 | 0.622 |
| 151 | 151 | 0.826 |
| 152 | 152 | 0.0909 |
| 153 | 153 | 0.516 |
| 154 | 154 | 0.584 |
| 155 | 155 | 0.179 |
| 156 | 156 | 0.712 |
| 157 | 157 | 0.762 |
| 158 | 158 | 0.00594 |
| 159 | 159 | 0.158 |
| 16 | 16 | 0.00697 |
| 160 | 160 | 0.553 |
| 161 | 161 | 0.904 |
| 162 | 162 | 0.465 |
| 163 | 163 | 0.27 |
| 164 | 164 | 0.355 |
| 165 | 165 | 0.743 |
| 166 | 166 | 0.118 |
| 167 | 167 | 0.59 |
| 168 | 168 | 0.68 |
| 169 | 169 | 0.0114 |
| 17 | 17 | 0.388 |
| 18 | 18 | 0.121 |
| 19 | 19 | 0.0167 |
| 2 | 2 | 0.331 |
| 20 | 20 | 0.429 |
| 21 | 21 | 0.164 |
| 22 | 22 | 0.115 |
| 23 | 23 | 0.235 |
| 24 | 24 | 0.753 |
| 25 | 25 | 0.63 |
| 26 | 26 | 0.34 |
| 27 | 27 | 0.138 |
| 28 | 28 | 0.416 |
| 29 | 29 | 0.314 |
| 3 | 3 | 0.23 |
| 30 | 30 | 0.475 |
| 31 | 31 | 0.382 |
| 32 | 32 | 3.09885e-6 |
| 33 | 33 | 0.665 |
| 34 | 34 | 1 |
| 35 | 35 | 0.373 |
| 36 | 36 | 0.0197 |
| 37 | 37 | 0.0546 |
| 38 | 38 | 0.953 |
| 39 | 39 | 0.29 |
| 4 | 4 | 0.451 |
| 40 | 40 | 0.574 |
| 41 | 41 | 0.478 |
| 42 | 42 | 0.905 |
| 43 | 43 | 0.276 |
| 44 | 44 | 0.00573 |
| 45 | 45 | 0.746 |
| 46 | 46 | 0.0651 |
| 47 | 47 | 0.569 |
| 48 | 48 | 0.525 |
| 49 | 49 | 0.926 |
| 5 | 5 | 0.9 |
| 50 | 50 | 0.912 |
| 51 | 51 | 0.59 |
| 52 | 52 | 0.793 |
| 53 | 53 | 0.145 |
| 54 | 54 | 0.741 |
| 55 | 55 | 0.182 |
| 56 | 56 | 0.433 |
| 57 | 57 | 0.846 |
| 58 | 58 | 0.656 |
| 59 | 59 | 0.0242 |
| 6 | 6 | 0.852 |
| 60 | 60 | 0.56 |
| 61 | 61 | 0.762 |
| 62 | 62 | 0.758 |
| 63 | 63 | 0.491 |
| 64 | 64 | 0.485 |
| 65 | 65 | 0.411 |
| 66 | 66 | 0.607 |
| 67 | 67 | 0.341 |
| 68 | 68 | 0.325 |
| 69 | 69 | 0.187 |
| 7 | 7 | 0.363 |
| 70 | 70 | 0.115 |
| 71 | 71 | 0.101 |
| 72 | 72 | 0.934 |
| 73 | 73 | 0.0541 |
| 74 | 74 | 0.698 |
| 75 | 75 | 0.295 |
| 76 | 76 | 0.603 |
| 77 | 77 | 0.00559 |
| 78 | 78 | 0.637 |
| 79 | 79 | 8.63998e-4 |
| 8 | 8 | 0.0399 |
| 80 | 80 | 0.182 |
| 81 | 81 | 0.274 |
| 82 | 82 | 0.0675 |
| 83 | 83 | 0.564 |
| 84 | 84 | 0.567 |
| 85 | 85 | 0.14 |
| 86 | 86 | 0.482 |
| 87 | 87 | 0.0548 |
| 88 | 88 | 0.76 |
| 89 | 89 | 0.00762 |
| 9 | 9 | 0.331 |
| 90 | 90 | 0.522 |
| 91 | 91 | 0.463 |
| 92 | 92 | 0.0834 |
| 93 | 93 | 0.779 |
| 94 | 94 | 0.638 |
| 95 | 95 | 0.397 |
| 96 | 96 | 0.873 |
| 97 | 97 | 0.973 |
| 98 | 98 | 0.847 |
| 99 | 99 | 0.0126 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11724
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102694 leiomyoma cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
DOID: Disease
4 (disease)
14566 (disease of cellular proliferation)
0060072 (benign neoplasm)
0060084 (cell type benign neoplasm)
127 (leiomyoma)
UBERON: Anatomy
0000468 (multi-cellular organism)
0000995 (uterus)
0003134 (female reproductive organ)
0005156 (reproductive structure)
0000062 (organ)
0004120 (mesoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000990 (reproductive system)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003133 (reproductive organ)
0003975 (internal female genitalia)
0004175 (internal genitalia)
0010317 (germ layer / neural crest derived structure)
0003100 (female organism)
0000474 (female reproductive system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0102694 (leiomyoma cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
UBERON:0002532 (epiblast (generic))
UBERON:0006603 (presumptive mesoderm)
UBERON:0005795 (embryonic uterus)
UBERON:0010316 (germ layer / neural crest)
