FF:10605-108F2: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922 | |DRA_sample_Accession=CAGE@SAMD00005206 | ||
|accession_numbers=CAGE;DRX007873;DRR008745;DRZ000170;DRZ001555;DRZ011520;DRZ012905 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0001264,UBERON:0002100,UBERON:0000466,UBERON:0002075,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0002323,UBERON:0005177,UBERON:0000464,UBERON:0004458,UBERON:0000949 | |||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
|ancestors_in_disease_facet= | |ancestors_in_disease_facet= | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100669 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr3:12330560..12330579,+!p1@PPARG!1.79!69.51!PPARG;;chr6:126240442..126240459,+!p4@NCOA7!1.64!53.29!NCOA7;;chr6:126240380..126240430,+!p2@NCOA7!1.62!101.28!NCOA7;;chr6:126240463..126240489,+!p6@NCOA7!1.56!39.39!NCOA7;;chr6:10412600..10412637,-!p1@TFAP2A!1.46!45.35!TFAP2A;;chr12:66218598..66218645,+!p2@HMGA2!1.45!122.47!HMGA2;;chr20:55204351..55204377,+!p1@TFAP2C!1.39!29.79!TFAP2C;;chr15:67418119..67418162,+!p5@SMAD3!1.32!21.85!SMAD3;;chr2:172967621..172967637,-!p1@DLX2!1.22!41.37!DLX2;;chr6:10412392..10412409,-!p4@TFAP2A!1.22!17.87!TFAP2A;;chr7:26191809..26191890,+!p1@NFE2L3!1.21!74.80!NFE2L3;;chr14:61116183..61116208,-!p1@SIX1!1.21!57.26!SIX1;;chr15:67418177..67418204,+!p9@SMAD3!1.19!14.56!SMAD3;;chr6:10415484..10415508,-!p3@TFAP2A!1.17!13.90!TFAP2A;;chr1:25256756..25256774,-!p1@RUNX3!1.16!25.16!RUNX3;;chr12:66218836..66218888,+!p1@HMGA2!1.14!119.49!HMGA2;;chr12:27485785..27485816,+!p1@ARNTL2!1.14!89.04!ARNTL2;;chr11:65667884..65667895,-!p2@FOSL1!1.10!45.01!FOSL1;;chr17:70117153..70117174,+!p1@SOX9!1.09!116.51!SOX9;;chr6:10415276..10415341,-!p2@TFAP2A!1.09!13.90!TFAP2A;;chr2:172950227..172950249,+!p2@DLX1!1.08!10.92!DLX1;;chr12:66218378..66218401,+!p6@HMGA2!1.06!16.22!HMGA2;;chr21:38071430..38071456,+!p1@SIM2!1.06!10.59!SIM2;;chr2:172967242..172967265,-!p2@DLX2!1.06!10.59!DLX2;;chr15:67418047..67418093,+!p4@SMAD3!1.05!12.91!SMAD3;;chr12:66218573..66218596,+!p7@HMGA2!1.04!14.89!HMGA2;;chr7:27153454..27153469,-!p2@HOXA3!1.04!9.93!HOXA3;;chr12:27485823..27485868,+!p2@ARNTL2!1.02!39.39!ARNTL2;;chr12:54447599..54447630,+!p3@HOXC4!1.02!11.58!HOXC4;;chr3:141868357..141868393,-!p3@TFDP2!0.99!59.25!TFDP2;;chr6:126240356..126240379,+!p7@NCOA7!0.99!10.92!NCOA7;;chr12:27485762..27485776,+!p3@ARNTL2!0.98!23.50!ARNTL2;;chr12:66218255..66218304,+!p3@HMGA2!0.98!23.50!HMGA2;;chr10:8096772..8096787,+!p2@GATA3!0.98!10.26!GATA3;;chr2:172967323..172967336,-!p4@DLX2!0.97!8.27!DLX2;;chr15:67418099..67418118,+!p16@SMAD3!0.95!7.94!SMAD3;;chr6:34204921..34204939,+!p3@HMGA1!0.94!241.96!HMGA1;;chr17:46682321..46682362,-!p1@HOXB6!0.94!7.61!HOXB6;;chr11:65667846..65667868,-!p1@FOSL1!0.93!207.86!FOSL1;;chr12:66218003..66218018,+!p9@HMGA2!0.92!8.94!HMGA2;;chr17:46806067..46806097,-!p1@HOXB13!0.92!7.28!HOXB13;;chr17:41623692..41623715,-!p1@ETV4!0.91!31.78!ETV4;;chr2:45168997..45169020,+!p4@SIX3!0.90!6.95!SIX3;;chr21:38071403..38071428,+!p2@SIM2!0.90!6.95!SIM2;;chr9:110252035..110252057,-!p1@KLF4!0.89!113.86!KLF4;;chr2:172967276..172967296,-!p3@DLX2!0.88!6.62!DLX2;;chr12:19592405..19592492,+!p2@AEBP2!0.87!57.92!AEBP2;;chr20:42543441..42543497,+!p1@TOX2!0.87!30.45!TOX2;;chr17:46688334..46688385,-!p1@HOXB7!0.87!9.60!HOXB7;;chr16:86600426..86600441,+!p1@FOXC2!0.86!16.22!FOXC2;;chr2:172967353..172967365,-!p5@DLX2!0.86!6.29!DLX2;;chr12:54402745..54402788,+!p1@HOXC8!0.86!6.29!HOXC8;;chr6:34204672..34204692,+!p1@HMGA1!0.84!711.63!HMGA1;;chr9:114287433..114287513,+!p1@ZNF483!0.84!16.22!ZNF483;;chr2:45168834..45168847,+!p2@SIX3!0.82!5.63!SIX3;;chr17:46703942..46703964,-!p4@HOXB9!0.82!5.63!HOXB9;;chr5:321810..321877,+!p1@AHRR!0.81!18.54!AHRR;;chr12:66218152..66218174,+!p10@HMGA2!0.81!5.96!HMGA2;;chr1:120190786..120190915,-!p1@ZNF697!0.80!41.70!ZNF697;;chr5:72744445..72744466,-!p2@FOXD1!0.80!9.27!FOXD1;;chr5:174151612..174151633,+!p2@MSX2!0.80!5.30!MSX2;;chr13:100634031..100634045,+!p1@ZIC2!0.80!5.30!ZIC2;;chr17:46690839..46690884,-!p1@HOXB8!0.80!5.30!HOXB8;;chr11:61520075..61520136,+!p1@C11orf9!0.78!11.25!C11orf9;;chr12:66218420..66218439,+!p12@HMGA2!0.78!4.96!HMGA2;;chr6:10412477..10412490,-!p10@TFAP2A!0.78!4.96!TFAP2A;;chr6:126240490..126240501,+!p11@NCOA7!0.78!4.96!NCOA7;;chr7:96634850..96634874,+!p3@DLX6!0.78!4.96!DLX6;;chr2:176969228..176969260,+!p1@HOXD11!0.78!4.96!HOXD11;;chr15:67357924..67357952,+!p2@SMAD3!0.77!35.75!SMAD3;;chr5:72744594..72744609,-!p1@FOXD1!0.76!23.83!FOXD1;;chr17:41623009..41623053,-!p4@ETV4!0.75!7.94!ETV4;;chr2:200322654..200322707,-!p2@SATB2!0.75!6.95!SATB2;;chr12:66218212..66218244,+!p5@HMGA2!0.75!6.95!HMGA2;;chr13:79177703..79177729,-!p2@POU4F1!0.75!4.63!POU4F1;;chr6:10412576..10412599,-!p5@TFAP2A!0.75!4.63!TFAP2A;;chr17:8027418..8027432,-!p1@HES7!0.75!4.63!HES7;;chr5:174151553..174151610,+!p1@MSX2!0.74!7.94!MSX2;;chr2:200323414..200323455,-!p1@SATB2!0.73!9.93!SATB2;;chr12:66218183..66218209,+!p4@HMGA2!0.73!8.94!HMGA2;;chr10:8096631..8096660,+!p1@GATA3!0.72!5.30!GATA3;;chr13:28543285..28543314,-!p2@CDX2!0.72!4.30!CDX2;;chr16:86612320..86612394,+!p1@FOXL1!0.72!4.30!FOXL1;;chr17:46806098..46806118,-!p3@HOXB13!0.72!4.30!HOXB13;;chr10:104155480..104155534,+!p2@NFKB2!0.71!29.79!NFKB2;;chr2:157189180..157189290,-!p1@NR4A2!0.71!23.83!NR4A2;;chr6:126102254..126102289,+!p5@NCOA7!0.71!12.58!NCOA7;;chr9:110250697..110250738,-!p2@KLF4!0.71!4.96!KLF4;;chr2:101436564..101436647,+!p1@NPAS2!0.70!93.34!NPAS2;;chr11:65687362..65687436,+!p3@DRAP1!0.70!20.52!DRAP1;;chr12:66218443..66218461,+!p8@HMGA2!0.70!5.30!HMGA2;;chr12:66218904..66218913,+!p11@HMGA2!0.70!3.97!HMGA2;;chr16:86600870..86600921,+!p2@FOXC2!0.70!3.97!FOXC2;;chr6:126240542..126240553,+!p14@NCOA7!0.70!3.97!NCOA7;;chr7:155250249..155250278,+!p@chr7:155250249..155250278,+!0.70!3.97!EN2;;chr8:10588010..10588030,-!p1@SOX7!0.70!3.97!SOX7;;chr20:55205825..55205847,+!p2@TFAP2C!0.70!3.97!TFAP2C;;chr15:96874244..96874259,+!p5@NR2F2!0.69!10.26!NR2F2;;chr15:67358163..67358192,+!p1@SMAD3!0.68!101.95!SMAD3;;chr12:124873357..124873401,-!p1@NCOR2!0.67!48.99!NCOR2;;chr11:65686732..65686756,+!p2@DRAP1!0.67!17.54!DRAP1;;chr1:935398..935465,-!p2@HES4!0.67!8.27!HES4;;chr6:85473156..85473210,-!p2@TBX18!0.67!4.63!TBX18;;chr14:61116168..61116180,-!p2@SIX1!0.67!4.30!SIX1;;chr3:157823517..157823562,-!p1@SHOX2!0.67!3.97!SHOX2;;chr22:19748231..19748317,+!p1@TBX1!0.67!3.64!TBX1;;chr12:54393880..54393962,+!p1@HOXC9!0.67!3.64!HOXC9;;chr13:100634130..100634143,+!p3@ZIC2!0.67!3.64!ZIC2;;chr13:45009301..45009320,-!p7@TSC22D1!0.67!3.64!TSC22D1;;chr6:34210478..34210481,+!p8@HMGA1!0.67!3.64!HMGA1;;chr8:11561684..11561751,+!p1@GATA4!0.67!3.64!GATA4;;chr9:115819058..115819082,-!p2@ZFP37!0.67!3.64!ZFP37;;chr13:45010939..45011033,-!p1@TSC22D1!0.66!272.74!TSC22D1;;chr5:178157651..178157689,-!p1@ZNF354A!0.66!16.88!ZNF354A;;chr6:126102292..126102329,+!p3@NCOA7!0.66!13.24!NCOA7;;chr20:62680984..62680999,-!p1@SOX18!0.66!4.96!SOX18;;chr17:46126136..46126152,+!p1@NFE2L1!0.65!207.86!NFE2L1;;chr2:10183651..10183713,+!p1@KLF11!0.65!29.13!KLF11;;chr18:19749541..19749557,+!p1@GATA6!0.65!12.25!GATA6;;chr8:86089417..86089440,+!p2@E2F5!0.65!7.61!E2F5;;chr17:79885633..79885645,-!p4@MAFG!0.65!6.29!MAFG;;chr12:125002827..125002855,-!p5@NCOR2!0.65!5.30!NCOR2;;chr2:178257401..178257432,-!p4@NFE2L2!0.64!22.18!NFE2L2;;chr11:65686802..65686818,+!p6@DRAP1!0.64!6.29!DRAP1;;chr14:74226961..74227020,-!p1@C14orf43!0.63!25.16!C14orf43;;chr11:128392273..128392308,-!p2@ETS1!0.63!16.22!ETS1;;chr21:30671690..30671762,+!p2@BACH1!0.63!12.91!BACH1;;chrX:101186981..101187030,-!p1@ZMAT1!0.63!12.25!ZMAT1;;chr9:16705069..16705086,-!p3@BNC2!0.63!3.31!BNC2;;chr9:129376201..129376225,+!p1@LMX1B!0.63!3.31!LMX1B;;chr11:65668011..65668020,-!p3@FOSL1!0.63!3.31!FOSL1;;chr12:54447219..54447237,+!p6@HOXC4!0.63!3.31!HOXC4;;chr12:66358080..66358094,+!p15@HMGA2!0.63!3.31!HMGA2;;chr9:124976185..124976212,-!p4@LHX6!0.63!3.31!LHX6;;chr5:180288248..180288291,-!p1@ZFP62!0.62!22.84!ZFP62;;chr4:4291861..4291913,-!p1@LYAR!0.61!86.06!LYAR;;chr3:12329397..12329433,+!p2@PPARG!0.61!7.94!PPARG;;chr9:110251836..110251887,-!p4@KLF4!0.61!4.30!KLF4;;chr14:35873947..35873965,-!p1@NFKBIA!0.60!231.03!NFKBIA;;chr11:128392085..128392232,-!p1@ETS1!0.60!120.81!ETS1;;chr9:115818951..115819011,-!p1@ZFP37!0.60!10.59!ZFP37;;chr1:212873267..212873332,-!p1@BATF3!0.60!4.30!BATF3;;chr2:100721328..100721348,-!p4@AFF3!0.60!2.98!AFF3;;chr3:25470156..25470227,+!p2@RARB!0.60!2.98!RARB;;chr7:27190547..27190591,-!p1@HOXA6!0.60!2.98!HOXA6;;chr12:54447637..54447659,+!p4@HOXC4!0.60!2.98!HOXC4;;chr12:66218469..66218477,+!p16@HMGA2!0.60!2.98!HMGA2;;chr12:66357214..66357233,+!p13@HMGA2!0.60!2.98!HMGA2;;chr12:115121962..115121987,-!p1@TBX3!0.59!29.13!TBX3;;chr1:153939955..153940009,+!p2@CREB3L4!0.59!7.61!CREB3L4;;chr14:35872962..35873025,-!p3@NFKBIA!0.58!8.27!NFKBIA;;chr1:43148625..43148710,+!p3@YBX1!0.58!5.63!YBX1;;chr3:193853927..193853944,+!p1@HES1!0.57!109.56!HES1;;chr3:185826855..185826911,-!p1@ETV5!0.57!92.02!ETV5;;chr19:38146320..38146401,-!p1@ZFP30!0.57!18.20!ZFP30;;chr8:128749984..128750033,+!p4@MYC!0.57!11.58!MYC;;chr20:30193083..30193098,+!p1@ID1!0.56!267.11!ID1;;chr4:1873011..1873063,+!p2@WHSC1!0.56!10.59!WHSC1;;chr8:67525443..67525459,-!p2@MYBL1!0.56!4.30!MYBL1;;chr14:35872926..35872951,-!p4@NFKBIA!0.56!3.97!NFKBIA;;chr12:115122005..115122016,-!p3@TBX3!0.56!3.31!TBX3;;chr12:85673977..85674015,+!p1@ALX1!0.56!2.65!ALX1;;chr13:100634004..100634025,+!p2@ZIC2!0.56!2.65!ZIC2;;chr9:124976154..124976177,-!p5@LHX6!0.56!2.65!LHX6;;chrX:103499602..103499617,-!p1@ESX1!0.56!2.65!ESX1;;chr17:46691732..46691766,-!p4@HOXB8!0.56!2.65!HOXB8;;chr17:46703687..46703740,-!p1@HOXB9!0.56!2.65!HOXB9;;chr15:96874012..96874042,+!p2@NR2F2!0.55!28.47!NR2F2;;chr8:144329092..144329140,+!p1@ZFP41!0.55!22.51!ZFP41;;chr22:38597987..38598021,+!p2@MAFF!0.55!19.20!MAFF;;chr7:17338324..17338341,+!p3@AHR!0.55!10.26!AHR;;chr16:1429627..1429662,-!p2@UNKL!0.55!8.94!UNKL;;chr15:67358111..67358122,+!p6@SMAD3!0.55!4.96!SMAD3;;chr5:72744562..72744573,-!p3@FOXD1!0.55!3.31!FOXD1;;chr10:35484053..35484076,+!p1@CREM!0.54!7.28!CREM;;chr12:125002861..125002894,-!p7@NCOR2!0.54!3.97!NCOR2;;chr3:141087339..141087387,+!p2@ZBTB38!0.53!31.11!ZBTB38;;chr16:30537839..30537929,-!p1@ZNF768!0.53!18.87!ZNF768;;chr8:144373550..144373617,+!p1@ZNF696!0.53!10.59!ZNF696;;chr3:12329358..12329393,+!p3@PPARG!0.53!6.95!PPARG;;chr11:8102749..8102769,+!p2@TUB!0.53!5.30!TUB;;chr1:40367530..40367597,-!p1@MYCL1!0.53!4.96!MYCL1;;chr1:120190761..120190782,-!p2@ZNF697!0.53!3.64!ZNF697;;chr17:46687959..46688007,-!p2@HOXB7!0.53!3.64!HOXB7;;chr10:48355030..48355090,+!p1@ZNF488!0.53!3.31!ZNF488;;chr7:86781916..86781963,+!p2@DMTF1!0.52!12.58!DMTF1;;chr22:2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| |expression_enrichment_score=chr3:12330560..12330579,+!p1@PPARG!1.79!69.51!PPARG;;chr6:126240442..126240459,+!p4@NCOA7!1.64!53.29!NCOA7;;chr6:126240380..126240430,+!p2@NCOA7!1.62!101.28!NCOA7;;chr6:126240463..126240489,+!p6@NCOA7!1.56!39.39!NCOA7;;chr6:10412600..10412637,-!p1@TFAP2A!1.46!45.35!TFAP2A;;chr12:66218598..66218645,+!p2@HMGA2!1.45!122.47!HMGA2;;chr20:55204351..55204377,+!p1@TFAP2C!1.39!29.79!TFAP2C;;chr15:67418119..67418162,+!p5@SMAD3!1.32!21.85!SMAD3;;chr2:172967621..172967637,-!p1@DLX2!1.22!41.37!DLX2;;chr6:10412392..10412409,-!p4@TFAP2A!1.22!17.87!TFAP2A;;chr7:26191809..26191890,+!p1@NFE2L3!1.21!74.80!NFE2L3;;chr14:61116183..61116208,-!p1@SIX1!1.21!57.26!SIX1;;chr15:67418177..67418204,+!p9@SMAD3!1.19!14.56!SMAD3;;chr6:10415484..10415508,-!p3@TFAP2A!1.17!13.90!TFAP2A;;chr1:25256756..25256774,-!p1@RUNX3!1.16!25.16!RUNX3;;chr12:66218836..66218888,+!p1@HMGA2!1.14!119.49!HMGA2;;chr12:27485785..27485816,+!p1@ARNTL2!1.14!89.04!ARNTL2;;chr11:65667884..65667895,-!p2@FOSL1!1.10!45.01!FOSL1;;chr17:70117153..70117174,+!p1@SOX9!1.09!116.51!SOX9;;chr6:10415276..10415341,-!p2@TFAP2A!1.09!13.90!TFAP2A;;chr2:172950227..172950249,+!p2@DLX1!1.08!10.92!DLX1;;chr12:66218378..66218401,+!p6@HMGA2!1.06!16.22!HMGA2;;chr21:38071430..38071456,+!p1@SIM2!1.06!10.59!SIM2;;chr2:172967242..172967265,-!p2@DLX2!1.06!10.59!DLX2;;chr15:67418047..67418093,+!p4@SMAD3!1.05!12.91!SMAD3;;chr12:66218573..66218596,+!p7@HMGA2!1.04!14.89!HMGA2;;chr7:27153454..27153469,-!p2@HOXA3!1.04!9.93!HOXA3;;chr12:27485823..27485868,+!p2@ARNTL2!1.02!39.39!ARNTL2;;chr12:54447599..54447630,+!p3@HOXC4!1.02!11.58!HOXC4;;chr3:141868357..141868393,-!p3@TFDP2!0.99!59.25!TFDP2;;chr6:126240356..126240379,+!p7@NCOA7!0.99!10.92!NCOA7;;chr12:27485762..27485776,+!p3@ARNTL2!0.98!23.50!ARNTL2;;chr12:66218255..66218304,+!p3@HMGA2!0.98!23.50!HMGA2;;chr10:8096772..8096787,+!p2@GATA3!0.98!10.26!GATA3;;chr2:172967323..172967336,-!p4@DLX2!0.97!8.27!DLX2;;chr15:67418099..67418118,+!p16@SMAD3!0.95!7.94!SMAD3;;chr6:34204921..34204939,+!p3@HMGA1!0.94!241.96!HMGA1;;chr17:46682321..46682362,-!p1@HOXB6!0.94!7.61!HOXB6;;chr11:65667846..65667868,-!p1@FOSL1!0.93!207.86!FOSL1;;chr12:66218003..66218018,+!p9@HMGA2!0.92!8.94!HMGA2;;chr17:46806067..46806097,-!p1@HOXB13!0.92!7.28!HOXB13;;chr17:41623692..41623715,-!p1@ETV4!0.91!31.78!ETV4;;chr2:45168997..45169020,+!p4@SIX3!0.90!6.95!SIX3;;chr21:38071403..38071428,+!p2@SIM2!0.90!6.95!SIM2;;chr9:110252035..110252057,-!p1@KLF4!0.89!113.86!KLF4;;chr2:172967276..172967296,-!p3@DLX2!0.88!6.62!DLX2;;chr12:19592405..19592492,+!p2@AEBP2!0.87!57.92!AEBP2;;chr20:42543441..42543497,+!p1@TOX2!0.87!30.45!TOX2;;chr17:46688334..46688385,-!p1@HOXB7!0.87!9.60!HOXB7;;chr16:86600426..86600441,+!p1@FOXC2!0.86!16.22!FOXC2;;chr2:172967353..172967365,-!p5@DLX2!0.86!6.29!DLX2;;chr12:54402745..54402788,+!p1@HOXC8!0.86!6.29!HOXC8;;chr6:34204672..34204692,+!p1@HMGA1!0.84!711.63!HMGA1;;chr9:114287433..114287513,+!p1@ZNF483!0.84!16.22!ZNF483;;chr2:45168834..45168847,+!p2@SIX3!0.82!5.63!SIX3;;chr17:46703942..46703964,-!p4@HOXB9!0.82!5.63!HOXB9;;chr5:321810..321877,+!p1@AHRR!0.81!18.54!AHRR;;chr12:66218152..66218174,+!p10@HMGA2!0.81!5.96!HMGA2;;chr1:120190786..120190915,-!p1@ZNF697!0.80!41.70!ZNF697;;chr5:72744445..72744466,-!p2@FOXD1!0.80!9.27!FOXD1;;chr5:174151612..174151633,+!p2@MSX2!0.80!5.30!MSX2;;chr13:100634031..100634045,+!p1@ZIC2!0.80!5.30!ZIC2;;chr17:46690839..46690884,-!p1@HOXB8!0.80!5.30!HOXB8;;chr11:61520075..61520136,+!p1@C11orf9!0.78!11.25!C11orf9;;chr12:66218420..66218439,+!p12@HMGA2!0.78!4.96!HMGA2;;chr6:10412477..10412490,-!p10@TFAP2A!0.78!4.96!TFAP2A;;chr6:126240490..126240501,+!p11@NCOA7!0.78!4.96!NCOA7;;chr7:96634850..96634874,+!p3@DLX6!0.78!4.96!DLX6;;chr2:176969228..176969260,+!p1@HOXD11!0.78!4.96!HOXD11;;chr15:67357924..67357952,+!p2@SMAD3!0.77!35.75!SMAD3;;chr5:72744594..72744609,-!p1@FOXD1!0.76!23.83!FOXD1;;chr17:41623009..41623053,-!p4@ETV4!0.75!7.94!ETV4;;chr2:200322654..200322707,-!p2@SATB2!0.75!6.95!SATB2;;chr12:66218212..66218244,+!p5@HMGA2!0.75!6.95!HMGA2;;chr13:79177703..79177729,-!p2@POU4F1!0.75!4.63!POU4F1;;chr6:10412576..10412599,-!p5@TFAP2A!0.75!4.63!TFAP2A;;chr17:8027418..8027432,-!p1@HES7!0.75!4.63!HES7;;chr5:174151553..174151610,+!p1@MSX2!0.74!7.94!MSX2;;chr2:200323414..200323455,-!p1@SATB2!0.73!9.93!SATB2;;chr12:66218183..66218209,+!p4@HMGA2!0.73!8.94!HMGA2;;chr10:8096631..8096660,+!p1@GATA3!0.72!5.30!GATA3;;chr13:28543285..28543314,-!p2@CDX2!0.72!4.30!CDX2;;chr16:86612320..86612394,+!p1@FOXL1!0.72!4.30!FOXL1;;chr17:46806098..46806118,-!p3@HOXB13!0.72!4.30!HOXB13;;chr10:104155480..104155534,+!p2@NFKB2!0.71!29.79!NFKB2;;chr2:157189180..157189290,-!p1@NR4A2!0.71!23.83!NR4A2;;chr6:126102254..126102289,+!p5@NCOA7!0.71!12.58!NCOA7;;chr9:110250697..110250738,-!p2@KLF4!0.71!4.96!KLF4;;chr2:101436564..101436647,+!p1@NPAS2!0.70!93.34!NPAS2;;chr11:65687362..65687436,+!p3@DRAP1!0.70!20.52!DRAP1;;chr12:66218443..66218461,+!p8@HMGA2!0.70!5.30!HMGA2;;chr12:66218904..66218913,+!p11@HMGA2!0.70!3.97!HMGA2;;chr16:86600870..86600921,+!p2@FOXC2!0.70!3.97!FOXC2;;chr6:126240542..126240553,+!p14@NCOA7!0.70!3.97!NCOA7;;chr7:155250249..155250278,+!p@chr7:155250249..155250278,+!0.70!3.97!EN2;;chr8:10588010..10588030,-!p1@SOX7!0.70!3.97!SOX7;;chr20:55205825..55205847,+!p2@TFAP2C!0.70!3.97!TFAP2C;;chr15:96874244..96874259,+!p5@NR2F2!0.69!10.26!NR2F2;;chr15:67358163..67358192,+!p1@SMAD3!0.68!101.95!SMAD3;;chr12:124873357..124873401,-!p1@NCOR2!0.67!48.99!NCOR2;;chr11:65686732..65686756,+!p2@DRAP1!0.67!17.54!DRAP1;;chr1:935398..935465,-!p2@HES4!0.67!8.27!HES4;;chr6:85473156..85473210,-!p2@TBX18!0.67!4.63!TBX18;;chr14:61116168..61116180,-!p2@SIX1!0.67!4.30!SIX1;;chr3:157823517..157823562,-!p1@SHOX2!0.67!3.97!SHOX2;;chr22:19748231..19748317,+!p1@TBX1!0.67!3.64!TBX1;;chr12:54393880..54393962,+!p1@HOXC9!0.67!3.64!HOXC9;;chr13:100634130..100634143,+!p3@ZIC2!0.67!3.64!ZIC2;;chr13:45009301..45009320,-!p7@TSC22D1!0.67!3.64!TSC22D1;;chr6:34210478..34210481,+!p8@HMGA1!0.67!3.64!HMGA1;;chr8:11561684..11561751,+!p1@GATA4!0.67!3.64!GATA4;;chr9:115819058..115819082,-!p2@ZFP37!0.67!3.64!ZFP37;;chr13:45010939..45011033,-!p1@TSC22D1!0.66!272.74!TSC22D1;;chr5:178157651..178157689,-!p1@ZNF354A!0.66!16.88!ZNF354A;;chr6:126102292..126102329,+!p3@NCOA7!0.66!13.24!NCOA7;;chr20:62680984..62680999,-!p1@SOX18!0.66!4.96!SOX18;;chr17:46126136..46126152,+!p1@NFE2L1!0.65!207.86!NFE2L1;;chr2:10183651..10183713,+!p1@KLF11!0.65!29.13!KLF11;;chr18:19749541..19749557,+!p1@GATA6!0.65!12.25!GATA6;;chr8:86089417..86089440,+!p2@E2F5!0.65!7.61!E2F5;;chr17:79885633..79885645,-!p4@MAFG!0.65!6.29!MAFG;;chr12:125002827..125002855,-!p5@NCOR2!0.65!5.30!NCOR2;;chr2:178257401..178257432,-!p4@NFE2L2!0.64!22.18!NFE2L2;;chr11:65686802..65686818,+!p6@DRAP1!0.64!6.29!DRAP1;;chr14:74226961..74227020,-!p1@C14orf43!0.63!25.16!C14orf43;;chr11:128392273..128392308,-!p2@ETS1!0.63!16.22!ETS1;;chr21:30671690..30671762,+!p2@BACH1!0.63!12.91!BACH1;;chrX:101186981..101187030,-!p1@ZMAT1!0.63!12.25!ZMAT1;;chr9:16705069..16705086,-!p3@BNC2!0.63!3.31!BNC2;;chr9:129376201..129376225,+!p1@LMX1B!0.63!3.31!LMX1B;;chr11:65668011..65668020,-!p3@FOSL1!0.63!3.31!FOSL1;;chr12:54447219..54447237,+!p6@HOXC4!0.63!3.31!HOXC4;;chr12:66358080..66358094,+!p15@HMGA2!0.63!3.31!HMGA2;;chr9:124976185..124976212,-!p4@LHX6!0.63!3.31!LHX6;;chr5:180288248..180288291,-!p1@ZFP62!0.62!22.84!ZFP62;;chr4:4291861..4291913,-!p1@LYAR!0.61!86.06!LYAR;;chr3:12329397..12329433,+!p2@PPARG!0.61!7.94!PPARG;;chr9:110251836..110251887,-!p4@KLF4!0.61!4.30!KLF4;;chr14:35873947..35873965,-!p1@NFKBIA!0.60!231.03!NFKBIA;;chr11:128392085..128392232,-!p1@ETS1!0.60!120.81!ETS1;;chr9:115818951..115819011,-!p1@ZFP37!0.60!10.59!ZFP37;;chr1:212873267..212873332,-!p1@BATF3!0.60!4.30!BATF3;;chr2:100721328..100721348,-!p4@AFF3!0.60!2.98!AFF3;;chr3:25470156..25470227,+!p2@RARB!0.60!2.98!RARB;;chr7:27190547..27190591,-!p1@HOXA6!0.60!2.98!HOXA6;;chr12:54447637..54447659,+!p4@HOXC4!0.60!2.98!HOXC4;;chr12:66218469..66218477,+!p16@HMGA2!0.60!2.98!HMGA2;;chr12:66357214..66357233,+!p13@HMGA2!0.60!2.98!HMGA2;;chr12:115121962..115121987,-!p1@TBX3!0.59!29.13!TBX3;;chr1:153939955..153940009,+!p2@CREB3L4!0.59!7.61!CREB3L4;;chr14:35872962..35873025,-!p3@NFKBIA!0.58!8.27!NFKBIA;;chr1:43148625..43148710,+!p3@YBX1!0.58!5.63!YBX1;;chr3:193853927..193853944,+!p1@HES1!0.57!109.56!HES1;;chr3:185826855..185826911,-!p1@ETV5!0.57!92.02!ETV5;;chr19:38146320..38146401,-!p1@ZFP30!0.57!18.20!ZFP30;;chr8:128749984..128750033,+!p4@MYC!0.57!11.58!MYC;;chr20:30193083..30193098,+!p1@ID1!0.56!267.11!ID1;;chr4:1873011..1873063,+!p2@WHSC1!0.56!10.59!WHSC1;;chr8:67525443..67525459,-!p2@MYBL1!0.56!4.30!MYBL1;;chr14:35872926..35872951,-!p4@NFKBIA!0.56!3.97!NFKBIA;;chr12:115122005..115122016,-!p3@TBX3!0.56!3.31!TBX3;;chr12:85673977..85674015,+!p1@ALX1!0.56!2.65!ALX1;;chr13:100634004..100634025,+!p2@ZIC2!0.56!2.65!ZIC2;;chr9:124976154..124976177,-!p5@LHX6!0.56!2.65!LHX6;;chrX:103499602..103499617,-!p1@ESX1!0.56!2.65!ESX1;;chr17:46691732..46691766,-!p4@HOXB8!0.56!2.65!HOXB8;;chr17:46703687..46703740,-!p1@HOXB9!0.56!2.65!HOXB9;;chr15:96874012..96874042,+!p2@NR2F2!0.55!28.47!NR2F2;;chr8:144329092..144329140,+!p1@ZFP41!0.55!22.51!ZFP41;;chr22:38597987..38598021,+!p2@MAFF!0.55!19.20!MAFF;;chr7:17338324..17338341,+!p3@AHR!0.55!10.26!AHR;;chr16:1429627..1429662,-!p2@UNKL!0.55!8.94!UNKL;;chr15:67358111..67358122,+!p6@SMAD3!0.55!4.96!SMAD3;;chr5:72744562..72744573,-!p3@FOXD1!0.55!3.31!FOXD1;;chr10:35484053..35484076,+!p1@CREM!0.54!7.28!CREM;;chr12:125002861..125002894,-!p7@NCOR2!0.54!3.97!NCOR2;;chr3:141087339..141087387,+!p2@ZBTB38!0.53!31.11!ZBTB38;;chr16:30537839..30537929,-!p1@ZNF768!0.53!18.87!ZNF768;;chr8:144373550..144373617,+!p1@ZNF696!0.53!10.59!ZNF696;;chr3:12329358..12329393,+!p3@PPARG!0.53!6.95!PPARG;;chr11:8102749..8102769,+!p2@TUB!0.53!5.30!TUB;;chr1:40367530..40367597,-!p1@MYCL1!0.53!4.96!MYCL1;;chr1:120190761..120190782,-!p2@ZNF697!0.53!3.64!ZNF697;;chr17:46687959..46688007,-!p2@HOXB7!0.53!3.64!HOXB7;;chr10:48355030..48355090,+!p1@ZNF488!0.53!3.31!ZNF488;;chr7:86781916..86781963,+!p2@DMTF1!0.52!12.58!DMTF1;;chr22:2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| ||
| Line 36: | Line 40: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/embryonic%2520pancreas%2520cell%2520line%253a1C3D3.CNhs11732.10605-108F2.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/embryonic%2520pancreas%2520cell%2520line%253a1C3D3.CNhs11732.10605-108F2.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/embryonic%2520pancreas%2520cell%2520line%253a1C3D3.CNhs11732.10605-108F2.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/embryonic%2520pancreas%2520cell%2520line%253a1C3D3.CNhs11732.10605-108F2.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/embryonic%2520pancreas%2520cell%2520line%253a1C3D3.CNhs11732.10605-108F2.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10605-108F2 | |id=FF:10605-108F2 | ||
|is_a=EFO:0002091;;FF:0000210;;FF:0100669;;UBERON:0001264 | |is_a=EFO:0002091;;FF:0000210;;FF:0100669;;UBERON:0001264 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11732 | |||
|library_id_phase_based=2:CNhs11732 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10605 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10605 | |||
|name=embryonic pancreas cell line:1C3D3 | |name=embryonic pancreas cell line:1C3D3 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 44: | Line 59: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11732,LSID819,release009,COMPLETED | |profile_hcage=CNhs11732,LSID819,release009,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.110313407716952,0.0102910570253227,0,0,0,0.205912080649004,0,0.28468503616967,0.512760275567254,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.0291475796141277,0,0,0,0,0,0.568645391807501,0,0,-0.00878115904456236,0,0,0,0,0,0,0,0,0,0,0.1241754307343,0,0.00438831996882811,0.251279964745879,0,0,0,0,0,0,0,-0.0242150211128343,0,0,0,0,0,0,0,0.202509678742328,0,0,-0.097343627213097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0516003675677155,0,0,0,0.124721522945237,0.122104241341911,0,0,0,0,0.0261400794965935,0.570421525158878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.096373593922461,0.220626815433903,0,0,0.0788938239321021,0.157306089913557,0,0,0.1241754307343,0,0,0 | |||
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| |||
|rna_box=108 | |rna_box=108 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 59: | Line 77: | ||
|rna_weight_ug=18.19417 | |rna_weight_ug=18.19417 | ||
|sample_age=19 week embryo | |sample_age=19 week embryo | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB0796 | |sample_cell_catalog=RCB0796 | ||
|sample_cell_line=1C3D3 | |sample_cell_line=1C3D3 | ||
| Line 80: | Line 99: | ||
|top_motifs=FOXQ1:1.54459981527;PAX8:1.45506634335;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.40712202769;AIRE:1.39584197241;ONECUT1,2:1.39430490845;bHLH_family:1.15132533595;HES1:1.13289131545;POU1F1:0.857624543612;NKX2-2,8:0.836058067713;PAX1,9:0.726050056738;TEF:0.720153625458;ARID5B:0.651894750508;HOX{A6,A7,B6,B7}:0.586385682177;POU6F1:0.572940008774;PPARG:0.534872416862;ALX1:0.530781363729;FOX{I1,J2}:0.528420995239;RORA:0.514868136631;PITX1..3:0.489218646632;PAX3,7:0.417042051898;ZFP161:0.411535442984;ADNP_IRX_SIX_ZHX:0.394736961461;PAX4:0.386525479967;BPTF:0.384682651804;NRF1:0.369205735254;NFE2L2:0.35428982357;NFIX:0.340572167685;YY1:0.336493470761;GTF2A1,2:0.330833008024;CDC5L:0.329635033236;ZBTB16:0.301411830407;PRRX1,2:0.294205632352;ZNF143:0.292692884459;CEBPA,B_DDIT3:0.292409477593;FOS_FOS{B,L1}_JUN{B,D}:0.288716569718;PBX1:0.267429648775;MYB:0.257840993848;HOX{A4,D4}:0.257075821906;GLI1..3:0.25400785985;AHR_ARNT_ARNT2:0.245349143505;VSX1,2:0.242684125564;ELK1,4_GABP{A,B1}:0.241424323439;NFE2:0.231185323417;EGR1..3:0.200929230991;RFX1:0.194916688362;HOX{A5,B5}:0.194013587564;HOXA9_MEIS1:0.156943351117;RXR{A,B,G}:0.156482404429;TLX1..3_NFIC{dimer}:0.144460263525;TEAD1:0.136454592241;TFAP2B:0.133678410199;TP53:0.130230452843;BACH2:0.129228466184;SP1:0.113755178471;STAT5{A,B}:0.111192680784;E2F1..5:0.110242824394;FOX{D1,D2}:0.100981643021;XCPE1{core}:0.0981840487818;NFKB1_REL_RELA:0.0963353133825;HIC1:0.0937883853746;REST:0.0790155482217;UFEwm:0.0529296163779;FOSL2:0.0525940819744;HNF1A:0.04990587913;FOXP1:0.0477942476161;NANOG:0.0427829998121;ZIC1..3:0.0421014107689;LMO2:0.0373867085264;ATF4:0.0174830990065;NR5A1,2:0.0122031718658;CDX1,2,4:0.0104189816852;CUX2:0.0086723965042;ZNF423:0.00651932021975;NR3C1:-0.0127869435271;LEF1_TCF7_TCF7L1,2:-0.0172069172034;TBX4,5:-0.0298671974877;ZBTB6:-0.0319600162821;NFE2L1:-0.0373430308586;FOXA2:-0.0520869194271;EVI1:-0.0646703671002;TFAP2{A,C}:-0.0744031666484;FOXD3:-0.0796641248663;FOX{F1,F2,J1}:-0.0812975679604;SOX17:-0.0862975941333;ZNF148:-0.0904256084697;TFDP1:-0.0936119402806;POU2F1..3:-0.1063544797;NKX2-1,4:-0.107377346893;RBPJ:-0.110338456192;ALX4:-0.112230021804;NKX6-1,2:-0.121762082241;POU3F1..4:-0.122248915868;TOPORS:-0.123247927809;CRX:-0.128532061447;SOX5:-0.134487639671;PAX5:-0.136436908081;PDX1:-0.13836938986;IKZF2:-0.141919569585;MYOD1:-0.146009418608;SNAI1..3:-0.146438111362;FOXM1:-0.151084352454;HNF4A_NR2F1,2:-0.15279030363;BREu{core}:-0.176915374991;NKX3-2:-0.177879634169;T:-0.180849047475;ATF2:-0.193210685171;ELF1,2,4:-0.193545683926;HLF:-0.201088975441;NR1H4:-0.212168199295;ZNF384:-0.213034944452;NFIL3:-0.217785364021;ZEB1:-0.220812623891;EBF1:-0.22158725574;HSF1,2:-0.22234133777;PATZ1:-0.224780918901;HBP1_HMGB_SSRP1_UBTF:-0.24532977899;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.246257715418;NKX3-1:-0.248798433752;ESRRA:-0.256232263163;RFX2..5_RFXANK_RFXAP:-0.264476469249;MEF2{A,B,C,D}:-0.265601712389;POU5F1:-0.267013504627;HMGA1,2:-0.269410808816;ETS1,2:-0.271630857149;GATA6:-0.275161770612;EN1,2:-0.275740751456;DMAP1_NCOR{1,2}_SMARC:-0.278777372446;MED-1{core}:-0.286735599366;PAX2:-0.290076458386;ESR1:-0.305066235078;IKZF1:-0.30541283067;RXRA_VDR{dimer}:-0.311447980474;SRF:-0.324887439239;SOX2:-0.327189082826;FOXL1:-0.333379901896;ATF5_CREB3:-0.334288826558;SPIB:-0.342788491863;STAT2,4,6:-0.349883344141;IRF7:-0.357647864256;PRDM1:-0.362083149515;MYBL2:-0.371321942241;SOX{8,9,10}:-0.376058850919;NFY{A,B,C}:-0.377565144882;LHX3,4:-0.388646024114;OCT4_SOX2{dimer}:-0.391868605251;GTF2I:-0.410030072814;GFI1B:-0.438230602045;CREB1:-0.438943599491;SPI1:-0.446697746173;TAL1_TCF{3,4,12}:-0.450857753416;GZF1:-0.464446488737;MTF1:-0.467946951193;NFATC1..3:-0.478778140226;NHLH1,2:-0.522992381909;RUNX1..3:-0.526777960393;TFCP2:-0.537902843151;NR6A1:-0.572872201101;MTE{core}:-0.574106801219;JUN:-0.616910927165;IRF1,2:-0.661901019854;FOXN1:-0.685264535692;MYFfamily:-0.686345350824;HIF1A:-0.712970017231;SMAD1..7,9:-0.725936832689;MAZ:-0.73290979899;FOXO1,3,4:-0.736263657814;XBP1:-0.741851091355;AR:-0.746837535132;KLF4:-0.751182650786;STAT1,3:-0.771451074684;RREB1:-0.77440655871;DBP:-0.787685124009;GATA4:-0.806995806043;GFI1:-0.815672618203;TLX2:-0.816563544526;PAX6:-0.830650929839;TFAP4:-0.835600056056;NKX2-3_NKX2-5:-0.838642874282;ATF6:-0.853656494345;SPZ1:-0.860626005595;HAND1,2:-0.868595442021;MZF1:-0.916868840853;TBP:-0.97031842527;FOXP3:-0.995282915884;SREBF1,2:-1.00698148826;GCM1,2:-1.06526298851;HMX1:-1.06982806663;EP300:-1.10182610362;MAFB:-1.15110898082;ZNF238:-1.26412345929;NANOG{mouse}:-1.32799405421;TGIF1:-1.39941397783 | |top_motifs=FOXQ1:1.54459981527;PAX8:1.45506634335;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.40712202769;AIRE:1.39584197241;ONECUT1,2:1.39430490845;bHLH_family:1.15132533595;HES1:1.13289131545;POU1F1:0.857624543612;NKX2-2,8:0.836058067713;PAX1,9:0.726050056738;TEF:0.720153625458;ARID5B:0.651894750508;HOX{A6,A7,B6,B7}:0.586385682177;POU6F1:0.572940008774;PPARG:0.534872416862;ALX1:0.530781363729;FOX{I1,J2}:0.528420995239;RORA:0.514868136631;PITX1..3:0.489218646632;PAX3,7:0.417042051898;ZFP161:0.411535442984;ADNP_IRX_SIX_ZHX:0.394736961461;PAX4:0.386525479967;BPTF:0.384682651804;NRF1:0.369205735254;NFE2L2:0.35428982357;NFIX:0.340572167685;YY1:0.336493470761;GTF2A1,2:0.330833008024;CDC5L:0.329635033236;ZBTB16:0.301411830407;PRRX1,2:0.294205632352;ZNF143:0.292692884459;CEBPA,B_DDIT3:0.292409477593;FOS_FOS{B,L1}_JUN{B,D}:0.288716569718;PBX1:0.267429648775;MYB:0.257840993848;HOX{A4,D4}:0.257075821906;GLI1..3:0.25400785985;AHR_ARNT_ARNT2:0.245349143505;VSX1,2:0.242684125564;ELK1,4_GABP{A,B1}:0.241424323439;NFE2:0.231185323417;EGR1..3:0.200929230991;RFX1:0.194916688362;HOX{A5,B5}:0.194013587564;HOXA9_MEIS1:0.156943351117;RXR{A,B,G}:0.156482404429;TLX1..3_NFIC{dimer}:0.144460263525;TEAD1:0.136454592241;TFAP2B:0.133678410199;TP53:0.130230452843;BACH2:0.129228466184;SP1:0.113755178471;STAT5{A,B}:0.111192680784;E2F1..5:0.110242824394;FOX{D1,D2}:0.100981643021;XCPE1{core}:0.0981840487818;NFKB1_REL_RELA:0.0963353133825;HIC1:0.0937883853746;REST:0.0790155482217;UFEwm:0.0529296163779;FOSL2:0.0525940819744;HNF1A:0.04990587913;FOXP1:0.0477942476161;NANOG:0.0427829998121;ZIC1..3:0.0421014107689;LMO2:0.0373867085264;ATF4:0.0174830990065;NR5A1,2:0.0122031718658;CDX1,2,4:0.0104189816852;CUX2:0.0086723965042;ZNF423:0.00651932021975;NR3C1:-0.0127869435271;LEF1_TCF7_TCF7L1,2:-0.0172069172034;TBX4,5:-0.0298671974877;ZBTB6:-0.0319600162821;NFE2L1:-0.0373430308586;FOXA2:-0.0520869194271;EVI1:-0.0646703671002;TFAP2{A,C}:-0.0744031666484;FOXD3:-0.0796641248663;FOX{F1,F2,J1}:-0.0812975679604;SOX17:-0.0862975941333;ZNF148:-0.0904256084697;TFDP1:-0.0936119402806;POU2F1..3:-0.1063544797;NKX2-1,4:-0.107377346893;RBPJ:-0.110338456192;ALX4:-0.112230021804;NKX6-1,2:-0.121762082241;POU3F1..4:-0.122248915868;TOPORS:-0.123247927809;CRX:-0.128532061447;SOX5:-0.134487639671;PAX5:-0.136436908081;PDX1:-0.13836938986;IKZF2:-0.141919569585;MYOD1:-0.146009418608;SNAI1..3:-0.146438111362;FOXM1:-0.151084352454;HNF4A_NR2F1,2:-0.15279030363;BREu{core}:-0.176915374991;NKX3-2:-0.177879634169;T:-0.180849047475;ATF2:-0.193210685171;ELF1,2,4:-0.193545683926;HLF:-0.201088975441;NR1H4:-0.212168199295;ZNF384:-0.213034944452;NFIL3:-0.217785364021;ZEB1:-0.220812623891;EBF1:-0.22158725574;HSF1,2:-0.22234133777;PATZ1:-0.224780918901;HBP1_HMGB_SSRP1_UBTF:-0.24532977899;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.246257715418;NKX3-1:-0.248798433752;ESRRA:-0.256232263163;RFX2..5_RFXANK_RFXAP:-0.264476469249;MEF2{A,B,C,D}:-0.265601712389;POU5F1:-0.267013504627;HMGA1,2:-0.269410808816;ETS1,2:-0.271630857149;GATA6:-0.275161770612;EN1,2:-0.275740751456;DMAP1_NCOR{1,2}_SMARC:-0.278777372446;MED-1{core}:-0.286735599366;PAX2:-0.290076458386;ESR1:-0.305066235078;IKZF1:-0.30541283067;RXRA_VDR{dimer}:-0.311447980474;SRF:-0.324887439239;SOX2:-0.327189082826;FOXL1:-0.333379901896;ATF5_CREB3:-0.334288826558;SPIB:-0.342788491863;STAT2,4,6:-0.349883344141;IRF7:-0.357647864256;PRDM1:-0.362083149515;MYBL2:-0.371321942241;SOX{8,9,10}:-0.376058850919;NFY{A,B,C}:-0.377565144882;LHX3,4:-0.388646024114;OCT4_SOX2{dimer}:-0.391868605251;GTF2I:-0.410030072814;GFI1B:-0.438230602045;CREB1:-0.438943599491;SPI1:-0.446697746173;TAL1_TCF{3,4,12}:-0.450857753416;GZF1:-0.464446488737;MTF1:-0.467946951193;NFATC1..3:-0.478778140226;NHLH1,2:-0.522992381909;RUNX1..3:-0.526777960393;TFCP2:-0.537902843151;NR6A1:-0.572872201101;MTE{core}:-0.574106801219;JUN:-0.616910927165;IRF1,2:-0.661901019854;FOXN1:-0.685264535692;MYFfamily:-0.686345350824;HIF1A:-0.712970017231;SMAD1..7,9:-0.725936832689;MAZ:-0.73290979899;FOXO1,3,4:-0.736263657814;XBP1:-0.741851091355;AR:-0.746837535132;KLF4:-0.751182650786;STAT1,3:-0.771451074684;RREB1:-0.77440655871;DBP:-0.787685124009;GATA4:-0.806995806043;GFI1:-0.815672618203;TLX2:-0.816563544526;PAX6:-0.830650929839;TFAP4:-0.835600056056;NKX2-3_NKX2-5:-0.838642874282;ATF6:-0.853656494345;SPZ1:-0.860626005595;HAND1,2:-0.868595442021;MZF1:-0.916868840853;TBP:-0.97031842527;FOXP3:-0.995282915884;SREBF1,2:-1.00698148826;GCM1,2:-1.06526298851;HMX1:-1.06982806663;EP300:-1.10182610362;MAFB:-1.15110898082;ZNF238:-1.26412345929;NANOG{mouse}:-1.32799405421;TGIF1:-1.39941397783 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10605-108F2;search_select_hide=table117:FF:10605-108F2 | |||
}} | }} | ||
Latest revision as of 14:30, 3 June 2020
| Name: | embryonic pancreas cell line:1C3D3 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11732 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11732
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11732
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.579 |
| 10 | 10 | 0.292 |
| 100 | 100 | 0.278 |
| 101 | 101 | 0.891 |
| 102 | 102 | 0.128 |
| 103 | 103 | 0.121 |
| 104 | 104 | 0.449 |
| 105 | 105 | 0.891 |
| 106 | 106 | 0.00278 |
| 107 | 107 | 0.564 |
| 108 | 108 | 0.869 |
| 109 | 109 | 0.0174 |
| 11 | 11 | 0.547 |
| 110 | 110 | 0.719 |
| 111 | 111 | 0.114 |
| 112 | 112 | 0.446 |
| 113 | 113 | 0.0437 |
| 114 | 114 | 0.646 |
| 115 | 115 | 0.871 |
| 116 | 116 | 0.845 |
| 117 | 117 | 0.0779 |
| 118 | 118 | 0.342 |
| 119 | 119 | 0.0845 |
| 12 | 12 | 0.287 |
| 120 | 120 | 0.163 |
| 121 | 121 | 0.493 |
| 122 | 122 | 0.948 |
| 123 | 123 | 0.363 |
| 124 | 124 | 0.237 |
| 125 | 125 | 0.768 |
| 126 | 126 | 0.667 |
| 127 | 127 | 0.716 |
| 128 | 128 | 0.0382 |
| 129 | 129 | 0.219 |
| 13 | 13 | 0.114 |
| 130 | 130 | 0.673 |
| 131 | 131 | 0.105 |
| 132 | 132 | 0.677 |
| 133 | 133 | 0.109 |
| 134 | 134 | 0.0438 |
| 135 | 135 | 0.0191 |
| 136 | 136 | 0.118 |
| 137 | 137 | 0.334 |
| 138 | 138 | 0.583 |
| 139 | 139 | 0.542 |
| 14 | 14 | 0.715 |
| 140 | 140 | 0.74 |
| 141 | 141 | 0.829 |
| 142 | 142 | 0.266 |
| 143 | 143 | 0.458 |
| 144 | 144 | 0.914 |
| 145 | 145 | 0.136 |
| 146 | 146 | 0.697 |
| 147 | 147 | 0.054 |
| 148 | 148 | 0.68 |
| 149 | 149 | 0.11 |
| 15 | 15 | 0.0264 |
| 150 | 150 | 0.978 |
| 151 | 151 | 0.991 |
| 152 | 152 | 0.817 |
| 153 | 153 | 0.438 |
| 154 | 154 | 0.506 |
| 155 | 155 | 0.179 |
| 156 | 156 | 0.598 |
| 157 | 157 | 0.866 |
| 158 | 158 | 0.129 |
| 159 | 159 | 0.225 |
| 16 | 16 | 0.854 |
| 160 | 160 | 0.831 |
| 161 | 161 | 0.295 |
| 162 | 162 | 0.802 |
| 163 | 163 | 0.588 |
| 164 | 164 | 0.611 |
| 165 | 165 | 0.536 |
| 166 | 166 | 0.324 |
| 167 | 167 | 0.145 |
| 168 | 168 | 0.985 |
| 169 | 169 | 0.573 |
| 17 | 17 | 0.47 |
| 18 | 18 | 0.779 |
| 19 | 19 | 0.179 |
| 2 | 2 | 0.0436 |
| 20 | 20 | 0.00712 |
| 21 | 21 | 0.256 |
| 22 | 22 | 0.503 |
| 23 | 23 | 0.465 |
| 24 | 24 | 0.873 |
| 25 | 25 | 0.195 |
| 26 | 26 | 0.409 |
| 27 | 27 | 0.106 |
| 28 | 28 | 0.554 |
| 29 | 29 | 0.694 |
| 3 | 3 | 0.43 |
| 30 | 30 | 0.131 |
| 31 | 31 | 0.336 |
| 32 | 32 | 0.085 |
| 33 | 33 | 0.937 |
| 34 | 34 | 0.642 |
| 35 | 35 | 0.706 |
| 36 | 36 | 0.0852 |
| 37 | 37 | 0.642 |
| 38 | 38 | 0.497 |
| 39 | 39 | 0.846 |
| 4 | 4 | 0.988 |
| 40 | 40 | 0.0278 |
| 41 | 41 | 0.247 |
| 42 | 42 | 0.174 |
| 43 | 43 | 0.782 |
| 44 | 44 | 0.909 |
| 45 | 45 | 0.675 |
| 46 | 46 | 0.696 |
| 47 | 47 | 0.623 |
| 48 | 48 | 0.454 |
| 49 | 49 | 0.729 |
| 5 | 5 | 0.713 |
| 50 | 50 | 0.175 |
| 51 | 51 | 0.857 |
| 52 | 52 | 0.0316 |
| 53 | 53 | 0.341 |
| 54 | 54 | 0.909 |
| 55 | 55 | 0.448 |
| 56 | 56 | 0.416 |
| 57 | 57 | 0.251 |
| 58 | 58 | 0.518 |
| 59 | 59 | 0.143 |
| 6 | 6 | 0.536 |
| 60 | 60 | 0.0982 |
| 61 | 61 | 0.042 |
| 62 | 62 | 0.226 |
| 63 | 63 | 0.286 |
| 64 | 64 | 0.661 |
| 65 | 65 | 0.936 |
| 66 | 66 | 0.122 |
| 67 | 67 | 0.298 |
| 68 | 68 | 0.887 |
| 69 | 69 | 0.569 |
| 7 | 7 | 0.591 |
| 70 | 70 | 0.0593 |
| 71 | 71 | 0.85 |
| 72 | 72 | 0.104 |
| 73 | 73 | 0.618 |
| 74 | 74 | 0.472 |
| 75 | 75 | 0.199 |
| 76 | 76 | 0.0726 |
| 77 | 77 | 0.739 |
| 78 | 78 | 0.8 |
| 79 | 79 | 0.648 |
| 8 | 8 | 0.608 |
| 80 | 80 | 0.642 |
| 81 | 81 | 0.0985 |
| 82 | 82 | 0.504 |
| 83 | 83 | 0.572 |
| 84 | 84 | 0.791 |
| 85 | 85 | 0.834 |
| 86 | 86 | 0.437 |
| 87 | 87 | 0.103 |
| 88 | 88 | 0.822 |
| 89 | 89 | 0.0333 |
| 9 | 9 | 0.399 |
| 90 | 90 | 0.145 |
| 91 | 91 | 0.128 |
| 92 | 92 | 0.413 |
| 93 | 93 | 0.0195 |
| 94 | 94 | 0.631 |
| 95 | 95 | 0.147 |
| 96 | 96 | 0.272 |
| 97 | 97 | 0.761 |
| 98 | 98 | 0.371 |
| 99 | 99 | 0.229 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11732
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100669 embryonic cell line sample
UBERON:0001264 pancreas
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0001264 (pancreas)
0002100 (trunk)
0000466 (immaterial anatomical entity)
0002075 (viscus)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0002323 (body cavity)
0005177 (trunk region element)
0000464 (anatomical space)
0004458 (body cavity or lining)
0000949 (endocrine system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100669 (embryonic cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
