FF:10633-108I3: Difference between revisions

Latest revision as of 14:31, 3 June 2020

Name:	hepatoblastoma cell line:HuH-6
Species:	Human (Homo sapiens)
Library ID:	CNhs11742
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	liver
dev stage	NA
sex	male
age	1
cell type	hepatoblast
cell line	HuH-6
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005793

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11742		CAGE		DRX007904		DRR008776

Accession ID Hg19

Library id		BAM		CTSS
CNhs11742		DRZ000201		DRZ001586

Accession ID Hg38

Library id		BAM		CTSS
CNhs11742		DRZ011551		DRZ012936

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.014
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.481
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.117
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.0225
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0568
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.07
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.434
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	1.208
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0663
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.44
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11742

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.14
MA0003.1	MA0003.1	0.465
MA0004.1	MA0004.1	6.025e-4
MA0006.1	MA0006.1	0.625
MA0007.1	MA0007.1	0.382
MA0009.1	MA0009.1	0.217
MA0014.1	MA0014.1	0.711
MA0017.1	MA0017.1	7.10981e-9
MA0018.2	MA0018.2	0.754
MA0019.1	MA0019.1	0.653
MA0024.1	MA0024.1	1.09478e-7
MA0025.1	MA0025.1	0.0557
MA0027.1	MA0027.1	0.719
MA0028.1	MA0028.1	0.564
MA0029.1	MA0029.1	0.0226
MA0030.1	MA0030.1	0.0229
MA0031.1	MA0031.1	0.00521
MA0035.2	MA0035.2	0.017
MA0038.1	MA0038.1	0.00796
MA0039.2	MA0039.2	0.137
MA0040.1	MA0040.1	0.568
MA0041.1	MA0041.1	0.46
MA0042.1	MA0042.1	0.833
MA0043.1	MA0043.1	0.0923
MA0046.1	MA0046.1	1.71966e-31
MA0047.2	MA0047.2	1.35326e-4
MA0048.1	MA0048.1	0.695
MA0050.1	MA0050.1	9.6665e-9
MA0051.1	MA0051.1	3.60972e-6
MA0052.1	MA0052.1	0.922
MA0055.1	MA0055.1	0.0504
MA0057.1	MA0057.1	0.634
MA0058.1	MA0058.1	1.95092e-4
MA0059.1	MA0059.1	0.0359
MA0060.1	MA0060.1	1.06801e-19
MA0061.1	MA0061.1	2.58514e-4
MA0062.2	MA0062.2	0.452
MA0065.2	MA0065.2	6.38715e-4
MA0066.1	MA0066.1	0.404
MA0067.1	MA0067.1	0.411
MA0068.1	MA0068.1	0.0599
MA0069.1	MA0069.1	0.64
MA0070.1	MA0070.1	0.353
MA0071.1	MA0071.1	0.0621
MA0072.1	MA0072.1	0.133
MA0073.1	MA0073.1	0.296
MA0074.1	MA0074.1	0.523
MA0076.1	MA0076.1	0.526
MA0077.1	MA0077.1	0.0144
MA0078.1	MA0078.1	0.775
MA0079.2	MA0079.2	0.131
MA0080.2	MA0080.2	2.02518e-10
MA0081.1	MA0081.1	7.05312e-4
MA0083.1	MA0083.1	0.687
MA0084.1	MA0084.1	0.454
MA0087.1	MA0087.1	0.755
MA0088.1	MA0088.1	0.801
MA0090.1	MA0090.1	0.0691
MA0091.1	MA0091.1	0.123
MA0092.1	MA0092.1	0.0494
MA0093.1	MA0093.1	3.49915e-4
MA0099.2	MA0099.2	0.00225
MA0100.1	MA0100.1	0.133
MA0101.1	MA0101.1	0.131
MA0102.2	MA0102.2	0.755
MA0103.1	MA0103.1	9.03384e-5
MA0104.2	MA0104.2	0.00839
MA0105.1	MA0105.1	2.07702e-6
MA0106.1	MA0106.1	0.825
MA0107.1	MA0107.1	0.0105
MA0108.2	MA0108.2	9.32892e-7
MA0111.1	MA0111.1	0.283
MA0112.2	MA0112.2	0.0458
MA0113.1	MA0113.1	0.247
MA0114.1	MA0114.1	5.88146e-13
MA0115.1	MA0115.1	4.77989e-4
MA0116.1	MA0116.1	0.0017
MA0117.1	MA0117.1	0.682
MA0119.1	MA0119.1	0.269
MA0122.1	MA0122.1	0.621
MA0124.1	MA0124.1	0.156
MA0125.1	MA0125.1	0.459
MA0131.1	MA0131.1	0.617
MA0135.1	MA0135.1	0.556
MA0136.1	MA0136.1	2.40618e-7
MA0137.2	MA0137.2	0.024
MA0138.2	MA0138.2	0.344
MA0139.1	MA0139.1	0.465
MA0140.1	MA0140.1	0.0265
MA0141.1	MA0141.1	0.102
MA0142.1	MA0142.1	0.0341
MA0143.1	MA0143.1	0.615
MA0144.1	MA0144.1	0.0262
MA0145.1	MA0145.1	0.439
MA0146.1	MA0146.1	0.755
MA0147.1	MA0147.1	0.00588
MA0148.1	MA0148.1	8.42325e-4
MA0149.1	MA0149.1	0.887
MA0150.1	MA0150.1	0.235
MA0152.1	MA0152.1	0.986
MA0153.1	MA0153.1	5.73308e-24
MA0154.1	MA0154.1	6.65914e-4
MA0155.1	MA0155.1	0.636
MA0156.1	MA0156.1	3.38082e-6
MA0157.1	MA0157.1	0.119
MA0159.1	MA0159.1	0.898
MA0160.1	MA0160.1	0.0173
MA0162.1	MA0162.1	0.363
MA0163.1	MA0163.1	4.18301e-4
MA0164.1	MA0164.1	0.0146
MA0258.1	MA0258.1	0.38
MA0259.1	MA0259.1	0.22

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11742

Novel motif	Logo	P-value
1	1	0.86
10	10	0.00628
100	100	0.993
101	101	0.889
102	102	0.902
103	103	0.343
104	104	0.875
105	105	0.908
106	106	0.0012
107	107	0.142
108	108	0.713
109	109	0.12
11	11	0.266
110	110	0.288
111	111	0.108
112	112	0.0809
113	113	0.21
114	114	0.0991
115	115	0.0162
116	116	0.211
117	117	0.195
118	118	0.7
119	119	0.164
12	12	0.394
120	120	0.453
121	121	0.187
122	122	0.283
123	123	0.412
124	124	0.602
125	125	0.154
126	126	0.308
127	127	0.425
128	128	0.0782
129	129	0.408
13	13	0.148
130	130	0.665
131	131	0.163
132	132	0.345
133	133	0.148
134	134	0.0637
135	135	0.0471
136	136	0.379
137	137	0.0524
138	138	0.156
139	139	0.286
14	14	0.697
140	140	0.353
141	141	0.0206
142	142	0.847
143	143	0.0132
144	144	0.495
145	145	0.262
146	146	0.671
147	147	0.423
148	148	0.0455
149	149	0.368
15	15	0.651
150	150	0.411
151	151	0.657
152	152	0.0819
153	153	0.149
154	154	0.24
155	155	0.301
156	156	0.708
157	157	0.681
158	158	0.549
159	159	0.649
16	16	0.294
160	160	0.883
161	161	0.71
162	162	0.402
163	163	0.966
164	164	0.0487
165	165	0.627
166	166	0.341
167	167	0.746
168	168	0.757
169	169	0.428
17	17	0.429
18	18	0.0912
19	19	0.348
2	2	0.166
20	20	0.973
21	21	0.288
22	22	0.807
23	23	0.0869
24	24	0.529
25	25	0.591
26	26	0.508
27	27	0.209
28	28	0.465
29	29	0.87
3	3	0.0807
30	30	0.981
31	31	0.779
32	32	0.00149
33	33	0.276
34	34	0.746
35	35	0.718
36	36	0.177
37	37	0.0176
38	38	0.807
39	39	0.357
4	4	0.345
40	40	0.697
41	41	0.293
42	42	0.704
43	43	0.111
44	44	0.559
45	45	0.518
46	46	0.59
47	47	0.871
48	48	0.613
49	49	0.707
5	5	0.804
50	50	0.696
51	51	0.715
52	52	0.692
53	53	0.627
54	54	0.756
55	55	0.387
56	56	0.675
57	57	0.774
58	58	0.862
59	59	0.0287
6	6	0.88
60	60	0.526
61	61	0.252
62	62	0.342
63	63	0.423
64	64	0.517
65	65	0.133
66	66	0.0101
67	67	0.818
68	68	0.00407
69	69	0.0993
7	7	0.163
70	70	5.14154e-4
71	71	0.00349
72	72	0.0749
73	73	0.116
74	74	0.674
75	75	0.632
76	76	0.262
77	77	0.125
78	78	0.0515
79	79	0.00988
8	8	0.351
80	80	0.381
81	81	0.268
82	82	0.0212
83	83	0.529
84	84	0.423
85	85	6.92955e-4
86	86	0.107
87	87	0.658
88	88	0.467
89	89	0.374
9	9	0.0947
90	90	0.999
91	91	0.351
92	92	0.0707
93	93	0.428
94	94	0.262
95	95	0.0297
96	96	0.826
97	97	0.646
98	98	0.849
99	99	0.863

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11742

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0101670 HuH-6 cell sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000181 (metabolising cell)
0000417 (endopolyploid cell)
0000668 (parenchymal cell)
0000412 (polyploid cell)
0000255 (eukaryotic cell)
0000182 (hepatocyte)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
7 (disease of anatomical entity)
305 (carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002107 (liver)
0002100 (trunk)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002368 (endocrine gland)
0005177 (trunk region element)
0002365 (exocrine gland)
0005172 (abdomen element)
0006925 (digestive gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002417 (abdominal segment of trunk)
0000949 (endocrine system)
0002330 (exocrine system)
0000916 (abdomen)
0002423 (hepatobiliary system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)
0100224 (liver cell line sample)
0100578 (hepatoma cell line sample)
0101664 (hepatoblastoma cell line sample)
0101670 (HuH-6 cell sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)
CL:0000223 (endodermal cell)
UBERON:0001041 (foregut)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0003104 (mesenchyme)
UBERON:0004161 (septum transversum)
UBERON:0009497 (epithelium of foregut-midgut junction)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005793
+|accession_numbers=CAGE;DRX007904;DRR008776;DRZ000201;DRZ001586;DRZ011551;DRZ012936
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002107,UBERON:0002100,UBERON:0001007,UBERON:0004119,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002368,UBERON:0005177,UBERON:0002365,UBERON:0005172,UBERON:0006925,UBERON:0002530,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0000949,UBERON:0002330,UBERON:0000916,UBERON:0002423
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000181,CL:0000417,CL:0000668,CL:0000412,CL:0000255,CL:0000182
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.71!511.42!PEG3;;chr6:1312325..1312340,+!p1@FOXQ1!2.65!705.97!FOXQ1;;chr7:73038839..73038862,-!p1@MLXIPL!2.22!163.09!MLXIPL;;chr1:164528687..164528711,+!p6@PBX1!2.10!144.45!PBX1;;chr19:33793430..33793447,-!p1@CEBPA!1.93!336.67!CEBPA;;chr2:171571827..171571853,+!p1@SP5!1.90!79.22!SP5;;chr7:156803329..156803362,-!p1@MNX1!1.88!75.72!MNX1;;chr8:55370487..55370503,+!p1@SOX17!1.83!66.40!SOX17;;chr20:42984330..42984364,+!p2@HNF4A!1.79!60.58!HNF4A;;chr1:214161272..214161322,+!p1@PROX1!1.72!71.06!PROX1;;chr12:115122318..115122331,-!p2@TBX3!1.66!44.27!TBX3;;chr16:85932760..85932775,+!p1@IRF8!1.61!39.61!IRF8;;chr12:66218836..66218888,+!p1@HMGA2!1.60!344.83!HMGA2;;chr18:19749541..19749557,+!p1@GATA6!1.60!116.50!GATA6;;chr19:54024251..54024305,+!p4@ZNF331!1.58!59.41!ZNF331;;chr8:145701192..145701241,-!p1@FOXH1!1.58!37.28!FOXH1;;chr2:171572786..171572840,+!p2@SP5!1.57!36.11!SP5;;chr2:25475120..25475176,-!p2@DNMT3A!1.56!46.60!DNMT3A;;chr17:41622765..41622821,-!p2@ETV4!1.55!52.42!ETV4;;chr7:27179814..27179840,-!p4@HOXA3!1.54!33.78!HOXA3;;chr19:54024313..54024361,+!p7@ZNF331!1.54!33.78!ZNF331;;chr19:46367576..46367592,+!p1@FOXA3!1.53!32.62!FOXA3;;chrX:131547625..131547644,-!p4@MBNL3!1.53!32.62!MBNL3;;chr1:214161328..214161348,+!p2@PROX1!1.48!29.12!PROX1;;chr17:41623692..41623715,-!p1@ETV4!1.46!114.17!ETV4;;chr10:8095593..8095625,+!p3@GATA3!1.45!31.45!GATA3;;chr2:171571931..171571959,+!p3@SP5!1.43!25.63!SP5;;chr1:209979467..209979494,-!p1@IRF6!1.41!27.96!IRF6;;chr12:56414795..56414836,+!p4@IKZF4!1.41!24.46!IKZF4;;chr13:28543431..28543487,-!p1@CDX2!1.41!24.46!CDX2;;chr18:19749517..19749531,+!p3@GATA6!1.39!41.94!GATA6;;chr12:66218183..66218209,+!p4@HMGA2!1.38!43.10!HMGA2;;chr17:26697276..26697303,-!p2@SEBOX,p2@VTN!1.36!22.13!SEBOX;;chr20:43029862..43029900,+!p1@HNF4A!1.36!22.13!HNF4A;;chr20:50418972..50419029,-!p1@SALL4!1.36!22.13!SALL4;;chr12:115122303..115122314,-!p6@TBX3!1.34!20.97!TBX3;;chr6:41514078..41514158,+!p1@FOXP4!1.33!177.07!FOXP4;;chr5:174151612..174151633,+!p2@MSX2!1.32!19.80!MSX2;;chr13:28543285..28543314,-!p2@CDX2!1.32!19.80!CDX2;;chr17:41622925..41622976,-!p3@ETV4!1.30!27.96!ETV4;;chr17:46667594..46667619,-!p1@HOXB3!1.29!18.64!HOXB3;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.29!18.64!HOXC5;;chr13:28543388..28543406,-!p3@CDX2!1.29!18.64!CDX2;;chr20:22564895..22564910,-!p1@FOXA2!1.29!18.64!FOXA2;;chrY:21906594..21906622,-!p1@KDM5D!1.29!18.64!KDM5D;;chr2:172967621..172967637,-!p1@DLX2!1.28!47.76!DLX2;;chr12:66218255..66218304,+!p3@HMGA2!1.27!46.60!HMGA2;;chr17:26697304..26697335,-!p1@SEBOX,p1@VTN!1.27!17.47!SEBOX;;chr19:926001..926046,+!p1@ARID3A!1.25!57.08!ARID3A;;chr2:239148671..239148686,-!p1@HES6!1.24!59.41!HES6;;chr12:66218003..66218018,+!p9@HMGA2!1.24!19.80!HMGA2;;chr6:1312155..1312187,+!p2@FOXQ1!1.24!16.31!FOXQ1;;chr1:91487774..91487802,-!p2@ZNF644!1.21!39.61!ZNF644;;chr17:7388010..7388017,-!p5@ZBTB4!1.21!25.63!ZBTB4;;chr11:113930425..113930471,+!p1@ZBTB16!1.21!22.13!ZBTB16;;chr2:171572699..171572713,+!p7@SP5!1.21!15.14!SP5;;chr1:201979743..201979762,+!p1@ELF3!1.21!15.14!ELF3;;chr1:214161358..214161377,+!p3@PROX1!1.21!15.14!PROX1;;chr12:115122005..115122016,-!p3@TBX3!1.20!17.47!TBX3;;chr12:52445218..52445237,+!p1@NR4A1!1.18!175.91!NR4A1;;chr20:22565370..22565388,-!p2@FOXA2!1.18!13.98!FOXA2;;chr2:25475094..25475112,-!p3@DNMT3A!1.18!13.98!DNMT3A;;chr17:46692457..46692484,-!p2@HOXB8!1.18!13.98!HOXB8;;chr18:55102598..55102623,+!p1@ONECUT2!1.18!13.98!ONECUT2;;chr12:66218212..66218244,+!p5@HMGA2!1.17!19.80!HMGA2;;chr12:115121770..115121781,-!p4@TBX3!1.14!12.81!TBX3;;chr12:3068668..3068689,+!p7@TEAD4!1.14!12.81!TEAD4;;chr17:45928521..45928539,-!p1@SP6!1.14!12.81!SP6;;chr6:15401104..15401166,+!p5@JARID2!1.14!12.81!JARID2;;chr2:122042770..122042785,-!p1@TFCP2L1!1.14!12.81!TFCP2L1;;chr1:40367668..40367684,-!p2@MYCL1!1.14!12.81!MYCL1;;chr20:42295745..42295765,+!p1@MYBL2!1.11!193.38!MYBL2;;chr12:19592405..19592492,+!p2@AEBP2!1.11!102.52!AEBP2;;chr12:66218378..66218401,+!p6@HMGA2!1.11!18.64!HMGA2;;chr20:2673383..2673441,+!p1@EBF4!1.10!18.64!EBF4;;chr12:56414851..56414871,+!p6@IKZF4!1.10!11.65!IKZF4;;chr17:7197911..7197964,-!p1@YBX2!1.10!11.65!YBX2;;chr7:73038867..73038878,-!p2@MLXIPL!1.10!11.65!MLXIPL;;chr8:76319876..76319926,+!p1@HNF4G!1.10!11.65!HNF4G;;chr3:169381420..169381535,-!p1@MECOM!1.08!12.81!MECOM;;chr11:19263160..19263176,-!p1@E2F8!1.07!12.81!E2F8;;chr3:24536253..24536328,-!p1@THRB!1.06!19.80!THRB;;chr5:174151553..174151610,+!p1@MSX2!1.06!17.47!MSX2;;chr9:127533519..127533573,-!p2@NR6A1!1.06!12.81!NR6A1;;chr15:96869511..96869525,+!p16@NR2F2!1.06!11.65!NR2F2;;chr13:28543316..28543329,-!p4@CDX2!1.06!10.48!CDX2;;chr9:127358120..127358170,-!p3@NR6A1!1.06!10.48!NR6A1;;chr2:171572483..171572501,+!p5@SP5!1.06!10.48!SP5;;chr2:171572729..171572745,+!p10@SP5!1.06!10.48!SP5;;chr2:178129619..178129633,-!p16@NFE2L2!1.06!10.48!NFE2L2;;chr1:35644482..35644486,-!p11@SFPQ!1.05!11.65!SFPQ;;chr8:86089627..86089653,+!p3@E2F5!1.05!11.65!E2F5;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@@ Line 38: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/hepatoblastoma%2520cell%2520line%253aHuH-6.CNhs11742.10633-108I3.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/hepatoblastoma%2520cell%2520line%253aHuH-6.CNhs11742.10633-108I3.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/hepatoblastoma%2520cell%2520line%253aHuH-6.CNhs11742.10633-108I3.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/hepatoblastoma%2520cell%2520line%253aHuH-6.CNhs11742.10633-108I3.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/hepatoblastoma%2520cell%2520line%253aHuH-6.CNhs11742.10633-108I3.hg38.nobarcode.ctss.bed.gz
 |id=FF:10633-108I3
 |is_a=EFO:0002091;;FF:0000210;;FF:0101670
 |is_obsolete=
+|library_id=CNhs11742
+|library_id_phase_based=2:CNhs11742
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10633
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10633
 |name=hepatoblastoma cell line:HuH-6
 |namespace=FANTOM5
@@ Line 46: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11742,LSID819,release009,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
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 |rna_box=108
@@ Line 62: / Line 78: @@
 |rna_weight_ug=180.00225
 |sample_age=1
+|sample_category=cell lines
 |sample_cell_catalog=RCB1367
 |sample_cell_line=HuH-6
@@ Line 83: / Line 100: @@
 |top_motifs=HNF4A_NR2F1,2:3.02107122772;LEF1_TCF7_TCF7L1,2:2.83966977704;HNF1A:2.61068626893;FOXA2:2.56196584453;FOX{F1,F2,J1}:2.36378658859;RXR{A,B,G}_{NR1H2,PPAR}dimers:2.12098186747;bHLH_family:1.94280388571;SOX{8,9,10}:1.63588078037;POU6F1:1.52674388803;NFY{A,B,C}:1.52456764333;ONECUT1,2:1.51598541077;SNAI1..3:1.51440104956;TFDP1:1.29529672604;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.22397867388;GFI1:1.16355898817;GATA6:1.15765198934;HOX{A6,A7,B6,B7}:1.13880578858;PBX1:1.12782039612;E2F1..5:1.08083334157;ZEB1:1.06296536477;RBPJ:1.04937515738;DBP:1.00666122716;SOX17:0.999082014346;T:0.986608911661;PDX1:0.980044745148;FOX{D1,D2}:0.975172051829;CDC5L:0.955998411031;MYOD1:0.934556065755;STAT5{A,B}:0.928193124987;TBP:0.924999429816;VSX1,2:0.891477534347;PPARG:0.846574681019;NR5A1,2:0.819473000319;POU3F1..4:0.809058380874;POU2F1..3:0.678330847875;FOXP1:0.672621664978;MYB:0.661412354131;ZBTB16:0.658935370661;PITX1..3:0.646835695974;MTF1:0.639146507793;ZFP161:0.635231883248;NKX2-1,4:0.605290299059;TOPORS:0.593873176671;SOX2:0.585479905773;MED-1{core}:0.560168042624;FOXM1:0.555151646293;HOXA9_MEIS1:0.508862337586;NR3C1:0.487371653499;OCT4_SOX2{dimer}:0.457804371711;ZNF143:0.453713044638;RORA:0.450457819876;FOX{I1,J2}:0.437987380431;CUX2:0.431121519894;TFAP2{A,C}:0.426641279293;TFAP2B:0.405704420831;NRF1:0.404503331821;PAX2:0.387354541779;BREu{core}:0.387224184278;TEAD1:0.371968278635;SP1:0.370090540938;PATZ1:0.330563953599;IKZF2:0.323537618333;ATF4:0.317731346707;MTE{core}:0.275125067208;FOXD3:0.242711063887;ATF6:0.220738860033;FOXO1,3,4:0.212108899175;ELK1,4_GABP{A,B1}:0.200645471266;ADNP_IRX_SIX_ZHX:0.194181753727;SOX5:0.188183352252;SREBF1,2:0.162272990189;FOXN1:0.128317478866;CEBPA,B_DDIT3:0.124984370502;HOX{A5,B5}:0.112613825356;FOXQ1:0.0855074737912;ATF2:0.0654206580643;LMO2:0.0553817857162;MAZ:0.0498291089936;AHR_ARNT_ARNT2:0.0454655920726;NKX2-3_NKX2-5:0.0375513891153;YY1:0.0269493809298;TFAP4:0.0168742707328;GATA4:-0.00750783113043;EBF1:-0.0138961591463;NFE2:-0.0179620823017;PRRX1,2:-0.0248872479332;ATF5_CREB3:-0.0379786579824;BPTF:-0.0593651115729;HLF:-0.0742419240488;LHX3,4:-0.087337601329;FOSL2:-0.110024004177;NFIX:-0.110500445706;HIC1:-0.117432482461;MEF2{A,B,C,D}:-0.135645423677;EVI1:-0.138997382051;NHLH1,2:-0.153272144485;NR6A1:-0.154831129397;PAX1,9:-0.167595431132;ESRRA:-0.177431517305;NFKB1_REL_RELA:-0.215312596233;AIRE:-0.223075394012;AR:-0.229607159664;POU1F1:-0.248494621756;FOS_FOS{B,L1}_JUN{B,D}:-0.285153423018;NFIL3:-0.301838997067;RFX1:-0.304116407903;XCPE1{core}:-0.314216556223;REST:-0.322484999876;GTF2I:-0.332823855062;NFE2L2:-0.346607446705;TFCP2:-0.346945540151;EGR1..3:-0.361240097503;NANOG:-0.396296568457;MAFB:-0.40007687573;PAX6:-0.40262566695;HOX{A4,D4}:-0.40353254158;HAND1,2:-0.407273162749;BACH2:-0.41645385902;CREB1:-0.420659166884;ESR1:-0.422672407866;MYFfamily:-0.433443529994;ALX1:-0.447718617167;DMAP1_NCOR{1,2}_SMARC:-0.464883738765;PAX8:-0.466891222244;GFI1B:-0.478121245189;RUNX1..3:-0.483677295841;KLF4:-0.485366233188;NANOG{mouse}:-0.486146298313;XBP1:-0.509812839853;PAX3,7:-0.516840390657;HBP1_HMGB_SSRP1_UBTF:-0.523089955341;HES1:-0.540172246496;STAT2,4,6:-0.542924169302;MZF1:-0.543909054042;POU5F1:-0.552013682148;MYBL2:-0.570376558554;CDX1,2,4:-0.574884600108;SRF:-0.592613633526;GTF2A1,2:-0.600086915098;RFX2..5_RFXANK_RFXAP:-0.626491814068;TLX1..3_NFIC{dimer}:-0.634449146013;EN1,2:-0.647894457888;RXRA_VDR{dimer}:-0.667425164563;RREB1:-0.687071544326;GZF1:-0.723805050243;SPIB:-0.738403908034;JUN:-0.7602958171;SPI1:-0.767350957814;TLX2:-0.773069773364;IRF7:-0.788880514059;TP53:-0.791906194606;ZNF384:-0.808307034357;PRDM1:-0.842938243988;FOXL1:-0.848571463883;NR1H4:-0.876176497824;ZNF148:-0.921108992033;UFEwm:-0.924600347331;ETS1,2:-0.934655203357;NKX3-2:-0.965162917596;GCM1,2:-0.969788188773;ALX4:-0.981473857822;HSF1,2:-1.01246172848;FOXP3:-1.0402341818;TGIF1:-1.06464778692;ZBTB6:-1.10156958674;GLI1..3:-1.11681542314;ELF1,2,4:-1.13679698831;STAT1,3:-1.14293349812;TEF:-1.169988987;NKX2-2,8:-1.17983052358;CRX:-1.20311175381;PAX4:-1.20983080526;TAL1_TCF{3,4,12}:-1.21726600927;IKZF1:-1.25982500477;ZIC1..3:-1.27885415852;NFATC1..3:-1.32241917907;TBX4,5:-1.32720723731;NKX3-1:-1.42923594321;EP300:-1.46487171141;IRF1,2:-1.49286256578;SMAD1..7,9:-1.50514348328;ARID5B:-1.53011471897;NKX6-1,2:-1.55029315705;HIF1A:-1.56765889592;SPZ1:-1.5696463925;HMGA1,2:-1.62047761757;ZNF238:-1.62507066206;RXR{A,B,G}:-1.62625427009;ZNF423:-1.67937913013;PAX5:-1.69525333322;HMX1:-1.8456493618;NFE2L1:-2.05987636199
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10633-108I3;search_select_hide=table117:FF:10633-108I3
 }}

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FF:10633-108I3: Difference between revisions

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Latest revision as of 14:31, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0