FF:10705-109H3: Difference between revisions

Latest revision as of 14:34, 3 June 2020

Name:	Ewing's sarcoma cell line:Hs 863.T
Species:	Human (Homo sapiens)
Library ID:	CNhs11836
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	bone
dev stage	NA
sex	female
age	5
cell type	osteoblast
cell line	Hs 863.T
company	ATCC
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004930

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11836		CAGE		DRX007781		DRR008653

Accession ID Hg19

Library id		BAM		CTSS
CNhs11836		DRZ000078		DRZ001463

Accession ID Hg38

Library id		BAM		CTSS
CNhs11836		DRZ011428		DRZ012813

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0965
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.31
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	1.188
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.101
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.396
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.265
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.3
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0.175
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0.175
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.527
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.0183
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.3
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.542
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0522
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.175
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.529
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.175
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.117
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.843
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.626
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	1.019
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	1.04
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	1.202
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	1.202
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11836

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.619
MA0003.1	MA0003.1	0.896
MA0004.1	MA0004.1	0.0644
MA0006.1	MA0006.1	0.184
MA0007.1	MA0007.1	0.468
MA0009.1	MA0009.1	0.313
MA0014.1	MA0014.1	0.13
MA0017.1	MA0017.1	0.547
MA0018.2	MA0018.2	2.28951e-4
MA0019.1	MA0019.1	0.338
MA0024.1	MA0024.1	9.92329e-6
MA0025.1	MA0025.1	0.00214
MA0027.1	MA0027.1	0.358
MA0028.1	MA0028.1	2.62666e-5
MA0029.1	MA0029.1	0.29
MA0030.1	MA0030.1	0.0496
MA0031.1	MA0031.1	0.0855
MA0035.2	MA0035.2	0.0697
MA0038.1	MA0038.1	2.04187e-4
MA0039.2	MA0039.2	0.00237
MA0040.1	MA0040.1	0.744
MA0041.1	MA0041.1	0.315
MA0042.1	MA0042.1	0.606
MA0043.1	MA0043.1	2.29919e-5
MA0046.1	MA0046.1	0.238
MA0047.2	MA0047.2	0.193
MA0048.1	MA0048.1	0.0229
MA0050.1	MA0050.1	0.206
MA0051.1	MA0051.1	0.193
MA0052.1	MA0052.1	0.195
MA0055.1	MA0055.1	0.768
MA0057.1	MA0057.1	0.879
MA0058.1	MA0058.1	0.00431
MA0059.1	MA0059.1	0.726
MA0060.1	MA0060.1	7.70217e-17
MA0061.1	MA0061.1	0.171
MA0062.2	MA0062.2	1.07912e-11
MA0065.2	MA0065.2	0.856
MA0066.1	MA0066.1	0.483
MA0067.1	MA0067.1	0.013
MA0068.1	MA0068.1	0.627
MA0069.1	MA0069.1	0.135
MA0070.1	MA0070.1	0.898
MA0071.1	MA0071.1	0.817
MA0072.1	MA0072.1	0.428
MA0073.1	MA0073.1	0.852
MA0074.1	MA0074.1	0.334
MA0076.1	MA0076.1	4.99962e-6
MA0077.1	MA0077.1	0.741
MA0078.1	MA0078.1	0.704
MA0079.2	MA0079.2	0.469
MA0080.2	MA0080.2	5.51223e-8
MA0081.1	MA0081.1	0.00154
MA0083.1	MA0083.1	0.0749
MA0084.1	MA0084.1	0.735
MA0087.1	MA0087.1	0.888
MA0088.1	MA0088.1	0.436
MA0090.1	MA0090.1	2.06017e-5
MA0091.1	MA0091.1	0.217
MA0092.1	MA0092.1	0.0562
MA0093.1	MA0093.1	0.0318
MA0099.2	MA0099.2	8.48667e-4
MA0100.1	MA0100.1	0.316
MA0101.1	MA0101.1	0.00748
MA0102.2	MA0102.2	0.00935
MA0103.1	MA0103.1	0.0596
MA0104.2	MA0104.2	0.00193
MA0105.1	MA0105.1	0.567
MA0106.1	MA0106.1	0.0773
MA0107.1	MA0107.1	0.016
MA0108.2	MA0108.2	0.386
MA0111.1	MA0111.1	0.534
MA0112.2	MA0112.2	0.00297
MA0113.1	MA0113.1	0.256
MA0114.1	MA0114.1	0.492
MA0115.1	MA0115.1	0.12
MA0116.1	MA0116.1	0.249
MA0117.1	MA0117.1	0.201
MA0119.1	MA0119.1	0.0207
MA0122.1	MA0122.1	0.186
MA0124.1	MA0124.1	0.158
MA0125.1	MA0125.1	0.187
MA0131.1	MA0131.1	0.204
MA0135.1	MA0135.1	0.248
MA0136.1	MA0136.1	2.93504e-12
MA0137.2	MA0137.2	0.125
MA0138.2	MA0138.2	0.316
MA0139.1	MA0139.1	0.67
MA0140.1	MA0140.1	0.322
MA0141.1	MA0141.1	0.762
MA0142.1	MA0142.1	0.13
MA0143.1	MA0143.1	0.885
MA0144.1	MA0144.1	0.574
MA0145.1	MA0145.1	0.4
MA0146.1	MA0146.1	0.774
MA0147.1	MA0147.1	0.0412
MA0148.1	MA0148.1	0.488
MA0149.1	MA0149.1	0.893
MA0150.1	MA0150.1	0.113
MA0152.1	MA0152.1	0.0268
MA0153.1	MA0153.1	0.519
MA0154.1	MA0154.1	0.355
MA0155.1	MA0155.1	0.491
MA0156.1	MA0156.1	1.27473e-8
MA0157.1	MA0157.1	0.514
MA0159.1	MA0159.1	0.134
MA0160.1	MA0160.1	0.178
MA0162.1	MA0162.1	0.073
MA0163.1	MA0163.1	0.00268
MA0164.1	MA0164.1	0.625
MA0258.1	MA0258.1	0.0584
MA0259.1	MA0259.1	0.496

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11836

Novel motif	Logo	P-value
1	1	0.316
10	10	0.384
100	100	0.921
101	101	0.902
102	102	0.618
103	103	0.302
104	104	0.602
105	105	0.198
106	106	0.0324
107	107	0.0155
108	108	0.195
109	109	0.683
11	11	0.365
110	110	0.76
111	111	0.345
112	112	0.222
113	113	0.146
114	114	0.107
115	115	0.155
116	116	0.0458
117	117	0.951
118	118	0.893
119	119	0.149
12	12	0.221
120	120	0.788
121	121	0.895
122	122	0.0968
123	123	0.375
124	124	0.612
125	125	0.55
126	126	0.978
127	127	0.897
128	128	0.0886
129	129	0.864
13	13	0.909
130	130	0.193
131	131	0.821
132	132	0.24
133	133	0.956
134	134	0.813
135	135	0.744
136	136	0.447
137	137	0.462
138	138	0.776
139	139	0.0382
14	14	0.309
140	140	0.412
141	141	0.78
142	142	0.809
143	143	0.685
144	144	0.339
145	145	0.467
146	146	0.42
147	147	0.151
148	148	0.353
149	149	0.00485
15	15	0.729
150	150	0.174
151	151	0.659
152	152	0.0218
153	153	0.242
154	154	0.207
155	155	0.229
156	156	0.443
157	157	0.365
158	158	0.0524
159	159	0.305
16	16	0.0178
160	160	0.87
161	161	0.495
162	162	0.326
163	163	0.851
164	164	0.0159
165	165	0.695
166	166	0.0433
167	167	0.615
168	168	0.236
169	169	0.0203
17	17	0.164
18	18	0.0449
19	19	0.0039
2	2	0.432
20	20	0.974
21	21	0.266
22	22	0.405
23	23	0.0899
24	24	0.345
25	25	0.517
26	26	0.272
27	27	0.872
28	28	0.647
29	29	0.375
3	3	0.373
30	30	0.966
31	31	0.448
32	32	2.42994e-17
33	33	0.965
34	34	0.925
35	35	0.844
36	36	0.0697
37	37	0.126
38	38	0.591
39	39	0.301
4	4	0.74
40	40	0.212
41	41	0.973
42	42	0.709
43	43	0.23
44	44	0.312
45	45	0.952
46	46	0.15
47	47	0.971
48	48	0.936
49	49	0.384
5	5	0.21
50	50	0.57
51	51	0.848
52	52	0.578
53	53	0.548
54	54	0.545
55	55	0.0313
56	56	0.852
57	57	0.287
58	58	0.791
59	59	0.12
6	6	0.522
60	60	0.506
61	61	0.342
62	62	0.397
63	63	0.131
64	64	0.906
65	65	0.394
66	66	0.183
67	67	0.565
68	68	0.968
69	69	0.397
7	7	0.437
70	70	0.062
71	71	0.185
72	72	0.934
73	73	0.0115
74	74	0.383
75	75	0.466
76	76	0.726
77	77	0.0454
78	78	0.977
79	79	0.00188
8	8	0.0321
80	80	0.548
81	81	0.36
82	82	0.0601
83	83	0.888
84	84	0.643
85	85	0.0257
86	86	0.725
87	87	0.643
88	88	0.568
89	89	0.211
9	9	0.746
90	90	0.331
91	91	0.541
92	92	0.031
93	93	0.963
94	94	0.334
95	95	0.54
96	96	0.333
97	97	0.475
98	98	0.613
99	99	0.0735

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11836

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
DOID:3369 peripheral primitive neuroectodermal tumor
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0104201 Ewing's sarcoma cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
3093 (nervous system cancer)
0050687 (cell type cancer)
1192 (peripheral nervous system neoplasm)
1115 (sarcoma)
3369 (peripheral primitive neuroectodermal tumor)

UBERON: Anatomy
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100400 (sarcoma cell line sample)
0104785 (Ewing's sarcoma family tumor cell line sample)
0104201 (Ewing's sarcoma cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
-|DRA_sample_Accession=CAGE@DRS007676
+|DRA_sample_Accession=CAGE@SAMD00004930
-|accession_numbers=CAGE;DRX007781;DRR008653;DRZ000078;DRZ001463
+|accession_numbers=CAGE;DRX007781;DRR008653;DRZ000078;DRZ001463;DRZ011428;DRZ012813
 |ancestors_in_anatomy_facet=UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
 |ancestors_in_cell_lineage_facet=
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr8:25902876..25902936,-!p1@EBF2!1.70!49.20!EBF2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.67!45.72!HOXC5;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.64!42.24!ZBED1;;chr1:197886461..197886558,+!p1@LHX9!1.59!37.77!LHX9;;chr1:170632285..170632309,+!p1@PRRX1!1.49!33.79!PRRX1;;chr18:19749541..19749557,+!p1@GATA6!1.44!82.00!GATA6;;chr20:50179368..50179392,-!p2@NFATC2!1.38!29.82!NFATC2;;chr11:46299199..46299233,+!p1@CREB3L1!1.35!107.35!CREB3L1;;chr9:100615499..100615519,+!p1@FOXE1!1.34!20.87!FOXE1;;chr18:19749386..19749404,+!p2@GATA6!1.31!27.33!GATA6;;chr1:170633058..170633084,+!p5@PRRX1!1.29!18.39!PRRX1;;chr9:132427972..132428056,+!p1@PRRX2!1.28!23.36!PRRX2;;chr11:46299539..46299620,+!p2@CREB3L1!1.27!29.82!CREB3L1;;chr12:54378923..54378966,+!p1@HOXC10!1.25!16.90!HOXC10;;chr18:53068911..53068935,-!p4@TCF4!1.24!18.39!TCF4;;chr9:132427883..132427951,+!p2@PRRX2!1.23!15.90!PRRX2;;chrX:591524..591527,+!p1@SHOX!1.19!14.41!SHOX;;chr17:1959369..1959388,+!p2@HIC1!1.18!37.27!HIC1;;chr10:63809013..63809041,+!p3@ARID5B!1.17!77.03!ARID5B;;chr12:54393880..54393962,+!p1@HOXC9!1.17!13.92!HOXC9;;chr1:170632723..170632739,+!p8@PRRX1!1.17!13.92!PRRX1;;chr20:30433396..30433414,-!p1@FOXS1!1.17!13.92!FOXS1;;chr2:192015701..192015743,-!p1@STAT4!1.14!17.39!STAT4;;chr1:170632959..170632987,+!p4@PRRX1!1.14!13.92!PRRX1;;chr8:72756637..72756664,-!p3@MSC!1.12!13.92!MSC;;chr1:170633348..170633399,+!p2@PRRX1!1.10!15.90!PRRX1;;chr5:158526917..158526932,-!p1@EBF1!1.09!28.33!EBF1;;chr8:72756267..72756296,-!p4@MSC!1.08!16.40!MSC;;chr12:80085061..80085119,-!p6@PAWR!1.06!16.90!PAWR;;chr1:170633262..170633285,+!p3@PRRX1!1.06!11.93!PRRX1;;chr8:72756063..72756125,-!p1@MSC!1.05!20.87!MSC;;chr12:54402745..54402788,+!p1@HOXC8!1.02!9.44!HOXC8;;chr14:75745523..75745537,+!p1@FOS!1.01!1121.17!FOS;;chr6:85474299..85474324,-!p1@TBX18!1.01!16.90!TBX18;;chr19:45971246..45971265,+!p1@FOSB!1.00!172.45!FOSB;;chr8:72756667..72756736,-!p2@MSC!1.00!14.41!MSC;;chr1:170632683..170632696,+!p12@PRRX1!1.00!8.95!PRRX1;;chr21:36421535..36421610,-!p2@RUNX1!0.99!32.30!RUNX1;;chr16:86600426..86600441,+!p1@FOXC2!0.99!21.87!FOXC2;;chr8:49833948..49833973,-!p2@SNAI2!0.98!55.16!SNAI2;;chr2:119604456..119604501,-!p2@EN1!0.98!8.45!EN1;;chr2:119605214..119605230,-!p1@EN1!0.98!8.45!EN1;;chr12:54379029..54379057,+!p2@HOXC10!0.98!8.45!HOXC10;;chr6:144329384..144329405,-!p1@PLAGL1!0.97!99.39!PLAGL1;;chr3:157823517..157823562,-!p1@SHOX2!0.97!8.95!SHOX2;;chr14:62162285..62162296,+!p3@HIF1A!0.96!43.24!HIF1A;;chr5:72744445..72744466,-!p2@FOXD1!0.96!13.92!FOXD1;;chr2:19558373..19558392,-!p1@OSR1!0.95!22.36!OSR1;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.95!7.95!HOXC5;;chr14:62162258..62162269,+!p2@HIF1A!0.94!76.53!HIF1A;;chr6:85473156..85473210,-!p2@TBX18!0.94!9.44!TBX18;;chr19:45908292..45908374,-!p1@PPP1R13L!0.91!66.59!PPP1R13L;;chr8:72756213..72756243,-!p5@MSC!0.91!9.44!MSC;;chr7:44143925..44143970,+!p1@AEBP1!0.90!161.02!AEBP1;;chr16:4366053..4366076,+!p@chr16:4366053..4366076,+!0.90!73.05!GLIS2;;chr5:137804484..137804498,+!p2@EGR1!0.90!28.82!EGR1;;chr7:15726243..15726293,-!p2@MEOX2!0.90!6.96!MEOX2;;chr7:15726296..15726315,-!p1@MEOX2!0.90!6.96!MEOX2;;chr11:125034640..125034655,+!p1@PKNOX2!0.90!6.96!PKNOX2;;chr14:61116183..61116208,-!p1@SIX1!0.89!26.84!SIX1;;chr18:19749517..19749531,+!p3@GATA6!0.89!12.42!GATA6;;chr19:16435625..16435682,+!p1@KLF2!0.88!223.14!KLF2;;chr8:72755987..72756002,-!p7@MSC!0.87!6.46!MSC;;chr8:93074803..93074845,-!p1@RUNX1T1!0.87!6.46!RUNX1T1;;chr19:47523058..47523114,+!p1@NPAS1!0.87!6.46!NPAS1;;chr8:49833978..49833996,-!p1@SNAI2!0.86!137.66!SNAI2;;chr8:72756023..72756055,-!p6@MSC!0.86!7.95!MSC;;chr3:71007886..71007887,-!p8@FOXP1!0.85!20.87!FOXP1;;chr7:44143978..44143989,+!p2@AEBP1!0.85!11.43!AEBP1;;chr10:63809106..63809127,+!p1@ARID5B!0.84!85.48!ARID5B;;chr10:63809077..63809089,+!p5@ARID5B!0.84!13.42!ARID5B;;chr12:54380404..54380433,+!p3@HOXC10!0.84!5.96!HOXC10;;chr3:71630980..71631110,-!p3@FOXP1!0.83!21.37!FOXP1;;chr7:150945754..150945789,-!p2@SMARCD3!0.83!18.88!SMARCD3;;chr8:106330656..106330684,+!p1@ZFPM2!0.83!15.90!ZFPM2;;chr3:5021268..5021282,+!p4@BHLHE40!0.82!11.93!BHLHE40;;chr2:45236540..45236577,-!p1@SIX2!0.81!5.47!SIX2;;chr7:27205136..27205164,-!p1@HOXA9!0.81!5.47!HOXA9;;chr3:71007344..71007348,-!p6@FOXP1!0.80!22.86!FOXP1;;chr14:62203595..62203676,+!p4@HIF1A!0.80!10.44!HIF1A;;chr17:38256799..38256815,-!p3@NR1D1!0.80!9.94!NR1D1;;chr17:46126136..46126152,+!p1@NFE2L1!0.79!288.24!NFE2L1;;chr3:71007770..71007789,-!p9@FOXP1!0.78!13.92!FOXP1;;chr7:19157043..19157088,-!p2@TWIST1!0.78!13.42!TWIST1;;chr2:192015750..192015793,-!p2@STAT4!0.78!6.96!STAT4;;chr2:176994408..176994492,+!p1@HOXD8!0.78!4.97!HOXD8;;chr12:54402790..54402805,+!p2@HOXC8!0.78!4.97!HOXC8;;chr1:170632250..170632277,+!p7@PRRX1!0.78!4.97!PRRX1;;chr5:158527104..158527135,-!p4@EBF1!0.78!4.97!EBF1;;chr9:100615546..100615558,+!p4@FOXE1!0.78!4.97!FOXE1;;chr9:100616439..100616476,+!p3@FOXE1!0.78!4.97!FOXE1;;chr16:31076332..31076388,-!p3@ZNF668!0.78!4.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@@ Line 40: / Line 40: @@
 |fonse_treatment_closure=
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+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/Ewing%2527s%2520sarcoma%2520cell%2520line%253aHs%2520863%252eT.CNhs11836.10705-109H3.hg38.nobarcode.bam
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 |id=FF:10705-109H3
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-|library_id_phase_based=1:CNhs11836
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+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10705
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10705
 |name=Ewing's sarcoma cell line:Hs 863.T
 |namespace=FANTOM5
@@ Line 50: / Line 59: @@
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@@ Line 89: / Line 99: @@
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10705-109H3;search_select_hide=table117:FF:10705-109H3
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FF:10705-109H3: Difference between revisions

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Latest revision as of 14:34, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0