FF:10717-109I6: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005858 | |||
|accession_numbers=CAGE;DRX007796;DRR008668;DRZ000093;DRZ001478;DRZ011443;DRZ012828 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL: | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0000076,CL:0000255 | ||
|ancestors_in_disease_facet=DOID: | |ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:305,DOID:1749 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0102024,FF:0101120 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
| | |||
|fonse_cell_line=FF:0101120 | |fonse_cell_line=FF:0101120 | ||
|fonse_cell_line_closure=FF:0101120 | |fonse_cell_line_closure=FF:0101120 | ||
| Line 35: | Line 40: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acantholytic%2520squamous%2520carcinoma%2520cell%2520line%253aHCC1806.CNhs11844.10717-109I6.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acantholytic%2520squamous%2520carcinoma%2520cell%2520line%253aHCC1806.CNhs11844.10717-109I6.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/acantholytic%2520squamous%2520carcinoma%2520cell%2520line%253aHCC1806.CNhs11844.10717-109I6.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/acantholytic%2520squamous%2520carcinoma%2520cell%2520line%253aHCC1806.CNhs11844.10717-109I6.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/acantholytic%2520squamous%2520carcinoma%2520cell%2520line%253aHCC1806.CNhs11844.10717-109I6.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10717-109I6 | |id=FF:10717-109I6 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0102024 | ||
|is_obsolete= | |||
|library_id=CNhs11844 | |||
|library_id_phase_based=2:CNhs11844 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10717 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10717 | |||
|name=acantholytic squamous carcinoma cell line:HCC1806 | |name=acantholytic squamous carcinoma cell line:HCC1806 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 59: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11844,LSID829,release010,COMPLETED | |profile_hcage=CNhs11844,LSID829,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0.0866048557546315,0.0593253378002861,0,0,0,0.136382442739174,0.0951833797824107,-0.104152420684251,0.0884175886519886,0,0,0,0,0,0,0,0,0,0,0.296700472825561,0.0951833797824107,0,0.0198867011608357,0,0.0866048557546315,0,0,0,0.0752518152412058,0,0,0.300858272769424,0,0,0,0,0,0,0,0,0,0,0.173209711509263,0,-0.0983080270748077,0,0,0,0,0,0,0,0,0.0623898346417972,0,0,0,0,0,0,0.0951833797824107,0.0762173502666582,0,0,-0.00216024743068628,0,0,0,0,0,0,0,0,0.23932967792473,0,0,0,0,0.0951833797824107,0,0,0,0,0.0475916898912054,0,0.0951833797824107,0.0206735025058158,0,0,-0.116492590398256,0.0475916898912054,0,0.0374529227287467,-0.0635465610360426,0.0327639760424855,0,0,0,0,-0.00285197145529574,0.0677924939161015,0,0,0,0,0,0,0,0,0,0,0.206269694716997,0,0,0,0,0,0,0.248992802580662,0.173209711509263,0,0,-0.0703677116666648,-0.328865672909519,0,0,0.0951833797824107,0,0,0.0951833797824107 | |||
|repeat_enrich_byname=0,0,0,0,-0.00285197145529574,0,0,0.621749712829017,0,0,0,0.0951833797824107,0.0951833797824107,0,0,0,-0.151995495503154,0.0475916898912054,0.296824994206251,0.153185330302089,0,0,0.0158896728365759,0.0951833797824107,0,0,0.000190679395634684,0.0951833797824107,0.0951833797824107,0,0,0.0951833797824107,0.264619510741733,0,-0.0504125515893149,0,0,0,0,0.0202899076350936,-0.305472230898407,0,-0.0545932221871445,-0.0683442610773682,0,0,0,0,-0.121890432921544,0,-0.120879483793741,0.090489543185846,0.747252296418358,0.0747388238489635,-0.055712496781182,0,0,0.0475916898912054,-0.0580573757062941,0.14959533666236,0,0,-0.121779851751874,-0.0861662387782486,0,0,-0.391044581551635,0,-0.254913164942277,-0.068763469523017,0,0.379092612080862,0,0,0,0,0,0,0.00779713375869333,0,0,0,0,-0.0574934668214365,0.240677837896361,0.136704648093465,0.173209711509263,0.56766643457533,0.0216218168392493,0.303408056860005,0,0,0.650236611006277,-0.0964222649755975,0.0070402893965107,0.213857646762446,0,-0.302389727009913,0.0486607004446036,-0.245114886356923,-0.0894917385280675,-0.147401849371139,0.20275765814445,0,-0.116492590398256,-0.280395552721683,0.15638991651179,-0.303274840574061,0.0167428267308129,-0.133912067430089,0.087468394026659,0,0.173209711509263,0,0.27808676187714,0,0.0951833797824107,-0.250785036552043,0.261232680348343,0.0755615226782955,0.237579412792893,0.066190495768325,0.0626868793504181,-0.0395325284566706,-0.160735980071034,0.00380119650947808,-0.301907485941335,0.0951833797824107,0,0,-0.0247363016577964,0.548207312562433,0.221823187220737,0,-0.091238084116683,0.365470601470918,0.0475916898912054,-0.340267933358077,-0.38178470176019,0,0,0.0676816878040383,0,0.0819249417622555,0,0,0,0.0998097058877983,0.313354004059117,0.0638449112700157,0,-0.0177348960634408,0.025583813105301,-0.0533247016142322,0,0.253551767458889,0.0114160680224487,-0.00137367953573186,-0.0533041266715055,0,0.0915773483989345,0.383488570933815,0.195513024195989,-0.0296554276974398,0.288922435223071,0.282851100354081,-0.140714217174996,-0.0635465610360426,-0.693756485007816,-0.0291243168110028,-0.0881268324752877,0,-0.78836137073597,-0.0577484187925069,0.066459831470894,-0.16624480932253,0.242633914231168,-0.107738413791225,0,0.183506915243378,0,0.23421002736611,0.230477461485019,-0.0465499968863886,-0.140204261556186,0,-0.0920983909213365,-0.25026122078545,0,0.37407454550347,0,0.788581570208632,0.0889625945900911,-0.102146553288746,0.0713241167371911,-0.0193246177168294,0,0.202095353275736,0,0,0.568460801840749,0.00385364016034173,0,-0.0295272240063599,-0.17538805166511,0.108911766787735,0.180729399390626,0.0951833797824107,0,0.312688030305384,0,0.173209711509263,-0.068058346829506,-0.0813071852051052,0.113472048243056,-0.253326341486756,0,-0.108622809454255,0,0,0.119172706860385,0,-0.0546320825842316,0,0,-0.0766715850895605,-0.116628112990133,0,0.0475916898912054,0,0.00110399828938454,0,0,0,0,0.0223155462532348,0,0,0.047665774128661,-0.259649950434037,0,0,0,0,0,0,0,0,0,0,0.29256318844813,-0.0313965196980485,-0.0278340358940096,0.0866048557546315,0,0,0,-0.215723402553475,0.230578300453563,0.173209711509263,0.0413470050116316,0.23932967792473,0.196369688847149,0,0,0.153188688135519,0,0,0,0.0866048557546315,0.0374529227287467,-0.1088644164649,0,0,0,-0.03762472367706,0,0,0,0,0.0234908261855793,0,0,0.173630812492175,0,-0.023840695943721,-0.0815818795468414,0,-0.071320943703103,0.0202737447711905,0.895248534985678,0,0,-0.0220174538651571,0,0,-0.0547417008384641,0,0.173209711509263,0.158909522306197,0,0,0,0,0,0,-0.214314512399756,0.173209711509263,0,0,0,0,0.0951833797824107,0,0,0,0,0,0.069176205426142,-0.0922240566585104,0.173209711509263,0,0,0,0.392739377694298,0,0,0.19717029782975,0.153323788508162,0,0,0.0159287159520006,0,0,0.23932967792473,0,0,0.175032979012208,0.206269694716997,0,0,0,0,0.0762173502666582,0,0.23932967792473,0,0.173209711509263,0.0816517975215664,0,0,-0.104152420684251,0,0,0,0,0,0,0,0.0121287998992801,0,0,0,0,0,0.224050175999448,-0.347554500810048,0,0,0,0,0,0.0951833797824107,0,-0.03550362028136,0,0.0951833797824107,0,0,0.0593253378002861,0,0,0,0.36654252797122,0,0.136382442739174,0,0,0,0,0,0.0772503041356764,0.119664838962365,0.0475916898912054,0.296700472825561,0,0,0,0,0,0,0,0,0,0,0,0,-0.0782188505116692,0,-0.113997804463646,0.00741907206701198,0,0,0.123935551358473,0,0,0,0,0,0,-0.031340424028527,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173209711509263,0,0,0,0,0,0,-0.0348580438050884,0,0,0,0,0,0,0,0.0752518152412058,0,0,0.0421637358453109,0,0,0,0,0.0614933487910123,0,0.144206613043736,-0.0769507051061507,-0.0360183123877148,0,0,0.0951833797824107,-0.00679388259124965,0,0,0,0.0951833797824107,0.106432324090362,0,0,0,0,0,0,0,1.19127366797481,0.64645891867545,0,0,0,0,0,0.0951833797824107,0,0,0.0951833797824107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0198867011608357,0,0,0,0,0,0,0,0,0,0,0,0,0.173684631017448,0,0,0,0,0,0,0,0,0,0,0.0475916898912054,0,0,0,0,0,0,0,0,0,0,0,0.139198348233846,0.347369262034896,0,0,0,0,0,0,0,0,0,0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| |||
|rna_box=109 | |rna_box=109 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 77: | ||
|rna_weight_ug=35.40051 | |rna_weight_ug=35.40051 | ||
|sample_age=60 | |sample_age=60 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=CRL-2335 | |sample_cell_catalog=CRL-2335 | ||
|sample_cell_line=HCC1806 | |sample_cell_line=HCC1806 | ||
| Line 69: | Line 90: | ||
|sample_ethnicity=B | |sample_ethnicity=B | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.05182233019726e-278!GO:0043226;organelle;3.51141778416546e-222!GO:0043229;intracellular organelle;1.49156120449833e-221!GO:0043231;intracellular membrane-bound organelle;8.35008123821268e-215!GO:0043227;membrane-bound organelle;1.43044739941044e-214!GO:0005737;cytoplasm;1.42894111397631e-182!GO:0044422;organelle part;1.23288613043901e-152!GO:0044446;intracellular organelle part;2.42822678255833e-151!GO:0044444;cytoplasmic part;6.94243982673747e-117!GO:0005634;nucleus;2.01576470545861e-108!GO:0032991;macromolecular complex;1.20509841345551e-106!GO:0044237;cellular metabolic process;6.25082446848106e-102!GO:0044238;primary metabolic process;2.16592430929014e-100!GO:0043170;macromolecule metabolic process;2.25183853762885e-96!GO:0030529;ribonucleoprotein complex;1.3669739777879e-86!GO:0044428;nuclear part;9.73132158917295e-78!GO:0005515;protein binding;1.75831421678745e-74!GO:0043233;organelle lumen;3.86191749184508e-74!GO:0031974;membrane-enclosed lumen;3.86191749184508e-74!GO:0003723;RNA binding;7.78875076892218e-70!GO:0005739;mitochondrion;3.14419191815091e-66!GO:0043283;biopolymer metabolic process;3.922717787659e-60!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.88984939577295e-55!GO:0043234;protein complex;4.30465369972272e-55!GO:0010467;gene expression;1.09013453252549e-53!GO:0005840;ribosome;5.80077779772768e-53!GO:0016043;cellular component organization and biogenesis;6.96365562329139e-53!GO:0006412;translation;3.41954397009709e-52!GO:0006396;RNA processing;5.11928499069628e-49!GO:0019538;protein metabolic process;2.30481435202381e-47!GO:0043228;non-membrane-bound organelle;7.42525580174088e-47!GO:0043232;intracellular non-membrane-bound organelle;7.42525580174088e-47!GO:0003735;structural constituent of ribosome;1.17844120767065e-45!GO:0031981;nuclear lumen;1.43433329511585e-44!GO:0044429;mitochondrial part;1.6231865073837e-44!GO:0005829;cytosol;8.19475670112502e-43!GO:0031967;organelle envelope;1.06338739482703e-41!GO:0031090;organelle membrane;1.19624644611044e-41!GO:0044267;cellular protein metabolic process;1.48944453077543e-41!GO:0006996;organelle organization and biogenesis;1.48944453077543e-41!GO:0044260;cellular macromolecule metabolic process;2.33324869584615e-41!GO:0031975;envelope;2.5628608676911e-41!GO:0006259;DNA metabolic process;1.09399473453547e-40!GO:0044249;cellular biosynthetic process;4.41601847456358e-40!GO:0016071;mRNA metabolic process;2.11752627015131e-39!GO:0009058;biosynthetic process;5.08912460505833e-39!GO:0033036;macromolecule localization;6.89148421481015e-39!GO:0033279;ribosomal subunit;1.70376592052104e-38!GO:0007049;cell cycle;2.09392008977851e-38!GO:0015031;protein transport;2.69896459891409e-38!GO:0065003;macromolecular complex assembly;6.16079957799573e-38!GO:0009059;macromolecule biosynthetic process;2.53837507346962e-37!GO:0008104;protein localization;2.73904738488822e-35!GO:0008380;RNA splicing;4.49279421719155e-35!GO:0045184;establishment of protein localization;4.76719907559261e-35!GO:0003676;nucleic acid binding;4.17423907362561e-34!GO:0006397;mRNA processing;7.97360355176931e-34!GO:0046907;intracellular transport;1.03607781082851e-33!GO:0022607;cellular component assembly;3.48170321942901e-33!GO:0022613;ribonucleoprotein complex biogenesis and assembly;5.57591102958232e-31!GO:0022402;cell cycle process;2.12023868678948e-29!GO:0000278;mitotic cell cycle;1.03318525901109e-28!GO:0005830;cytosolic ribosome (sensu Eukaryota);3.4238439890021e-28!GO:0005654;nucleoplasm;5.9758029784053e-28!GO:0016070;RNA metabolic process;1.13104645414684e-27!GO:0006886;intracellular protein transport;2.60732975870113e-27!GO:0005740;mitochondrial envelope;3.59657499529673e-27!GO:0005681;spliceosome;9.61593462792587e-27!GO:0019866;organelle inner membrane;9.97773917117701e-27!GO:0031966;mitochondrial membrane;1.42803309369316e-25!GO:0000166;nucleotide binding;4.06157167404646e-25!GO:0005694;chromosome;7.5384448899666e-25!GO:0044445;cytosolic part;3.06756192370696e-24!GO:0005743;mitochondrial inner membrane;3.27665168104266e-24!GO:0006974;response to DNA damage stimulus;8.98507933079447e-24!GO:0000087;M phase of mitotic cell cycle;3.53677542868167e-23!GO:0044427;chromosomal part;4.3629582594807e-23!GO:0044451;nucleoplasm part;6.10083912273481e-23!GO:0022403;cell cycle phase;6.8441330901234e-23!GO:0007067;mitosis;7.6476886635213e-23!GO:0051649;establishment of cellular localization;1.41937649729375e-22!GO:0051641;cellular localization;2.73541838425294e-22!GO:0016462;pyrophosphatase activity;1.14132315919724e-21!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;1.38217437259461e-21!GO:0016817;hydrolase activity, acting on acid anhydrides;1.97012291319138e-21!GO:0031980;mitochondrial lumen;2.32568464113417e-21!GO:0005759;mitochondrial matrix;2.32568464113417e-21!GO:0044455;mitochondrial membrane part;5.14208016404968e-21!GO:0017111;nucleoside-triphosphatase activity;6.225046633527e-21!GO:0006281;DNA repair;1.1195102754868e-20!GO:0006119;oxidative phosphorylation;3.5396302319539e-20!GO:0016874;ligase activity;3.99283400694107e-20!GO:0015934;large ribosomal subunit;4.33657644739723e-20!GO:0000279;M phase;4.33657644739723e-20!GO:0051301;cell division;6.04105318847127e-20!GO:0015935;small ribosomal subunit;1.64291402274847e-19!GO:0051276;chromosome organization and biogenesis;1.98039820108498e-19!GO:0006260;DNA replication;6.25864824442045e-19!GO:0022618;protein-RNA complex assembly;1.2079894005288e-18!GO:0044265;cellular macromolecule catabolic process;1.52227081297009e-18!GO:0051603;proteolysis involved in cellular protein catabolic process;1.99176451617697e-18!GO:0008134;transcription factor binding;2.6400687625727e-18!GO:0006512;ubiquitin cycle;2.96277928610134e-18!GO:0019941;modification-dependent protein catabolic process;3.83697076243936e-18!GO:0043632;modification-dependent macromolecule catabolic process;3.83697076243936e-18!GO:0032553;ribonucleotide binding;5.78158743533947e-18!GO:0032555;purine ribonucleotide binding;5.78158743533947e-18!GO:0044257;cellular protein catabolic process;6.15569797903929e-18!GO:0006511;ubiquitin-dependent protein catabolic process;6.17566563031503e-18!GO:0017076;purine nucleotide binding;9.28270089229943e-18!GO:0009719;response to endogenous stimulus;1.12159444197607e-17!GO:0043285;biopolymer catabolic process;1.32360631623833e-17!GO:0012505;endomembrane system;4.22843919922498e-17!GO:0005746;mitochondrial respiratory chain;5.14571693299588e-17!GO:0005730;nucleolus;5.97520231585848e-17!GO:0006457;protein folding;3.58411384370089e-16!GO:0009057;macromolecule catabolic process;4.52549198913543e-16!GO:0000502;proteasome complex (sensu Eukaryota);4.5421199746013e-16!GO:0008135;translation factor activity, nucleic acid binding;5.75934353066749e-16!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;8.67532472104893e-16!GO:0048770;pigment granule;9.51813459788913e-16!GO:0042470;melanosome;9.51813459788913e-16!GO:0005524;ATP binding;1.67053105226009e-15!GO:0050794;regulation of cellular process;1.78274726358562e-15!GO:0006605;protein targeting;2.117765792047e-15!GO:0032559;adenyl ribonucleotide binding;2.30592114351851e-15!GO:0044248;cellular catabolic process;2.72436682291902e-15!GO:0005761;mitochondrial ribosome;2.73501082678431e-15!GO:0000313;organellar ribosome;2.73501082678431e-15!GO:0030163;protein catabolic process;3.72194036585925e-15!GO:0005635;nuclear envelope;4.70456008947581e-15!GO:0030554;adenyl nucleotide binding;5.05866757324191e-15!GO:0044453;nuclear membrane part;6.33338066929287e-15!GO:0006325;establishment and/or maintenance of chromatin architecture;6.64078205408026e-15!GO:0050136;NADH dehydrogenase (quinone) activity;7.09217914735864e-15!GO:0003954;NADH dehydrogenase activity;7.09217914735864e-15!GO:0008137;NADH dehydrogenase (ubiquinone) activity;7.09217914735864e-15!GO:0012501;programmed cell death;8.11811031248247e-15!GO:0006915;apoptosis;1.13825731832691e-14!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);1.78880478767941e-14!GO:0031965;nuclear membrane;1.78880478767941e-14!GO:0006323;DNA packaging;2.87941941143819e-14!GO:0051726;regulation of cell cycle;4.33952445414171e-14!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.4009435124751e-14!GO:0000074;regulation of progression through cell cycle;5.41373516502327e-14!GO:0006366;transcription from RNA polymerase II promoter;5.65659347354298e-14!GO:0000785;chromatin;8.50558829260203e-14!GO:0005783;endoplasmic reticulum;8.67664881054981e-14!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.12646720024158e-13!GO:0042254;ribosome biogenesis and assembly;1.41844985330768e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;2.17338650548446e-13!GO:0000375;RNA splicing, via transesterification reactions;2.17338650548446e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.17338650548446e-13!GO:0051186;cofactor metabolic process;2.40342579325768e-13!GO:0042775;organelle ATP synthesis coupled electron transport;2.4125138961233e-13!GO:0042773;ATP synthesis coupled electron transport;2.4125138961233e-13!GO:0043412;biopolymer modification;3.13333260988649e-13!GO:0008219;cell death;5.8096975521127e-13!GO:0016265;death;5.8096975521127e-13!GO:0030964;NADH dehydrogenase complex (quinone);8.54945928511314e-13!GO:0045271;respiratory chain complex I;8.54945928511314e-13!GO:0005747;mitochondrial respiratory chain complex I;8.54945928511314e-13!GO:0005643;nuclear pore;2.14611302549771e-12!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;2.26198336578726e-12!GO:0016887;ATPase activity;2.52102035366788e-12!GO:0015630;microtubule cytoskeleton;2.71441386095409e-12!GO:0006913;nucleocytoplasmic transport;4.73568027521367e-12!GO:0048193;Golgi vesicle transport;5.55365352639963e-12!GO:0051082;unfolded protein binding;5.55365352639963e-12!GO:0006333;chromatin assembly or disassembly;6.5899237933612e-12!GO:0065004;protein-DNA complex assembly;6.69707979361086e-12!GO:0044432;endoplasmic reticulum part;8.6667634353756e-12!GO:0003743;translation initiation factor activity;9.02777121800204e-12!GO:0016604;nuclear body;1.06752762344363e-11!GO:0009055;electron carrier activity;1.21450103343542e-11!GO:0051169;nuclear transport;1.39436059466677e-11!GO:0006413;translational initiation;1.89479966142449e-11!GO:0048523;negative regulation of cellular process;3.04904204202e-11!GO:0042623;ATPase activity, coupled;3.16193097212597e-11!GO:0006464;protein modification process;3.27663318713308e-11!GO:0043687;post-translational protein modification;3.35354762918203e-11!GO:0003712;transcription cofactor activity;3.40748992283291e-11!GO:0008639;small protein conjugating enzyme activity;5.48246125972737e-11!GO:0006461;protein complex assembly;6.41128000828599e-11!GO:0006399;tRNA metabolic process;6.51099399087181e-11!GO:0004386;helicase activity;9.07813676742424e-11!GO:0005819;spindle;9.23108126094338e-11!GO:0004842;ubiquitin-protein ligase activity;1.06490796970699e-10!GO:0006446;regulation of translational initiation;1.4051283349308e-10!GO:0050657;nucleic acid transport;1.49151581580676e-10!GO:0051236;establishment of RNA localization;1.49151581580676e-10!GO:0050658;RNA transport;1.49151581580676e-10!GO:0005794;Golgi apparatus;1.49151581580676e-10!GO:0006403;RNA localization;1.6294731115571e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.04176739999128e-10!GO:0006732;coenzyme metabolic process;2.22428832735408e-10!GO:0019787;small conjugating protein ligase activity;2.59834599342434e-10!GO:0006334;nucleosome assembly;2.68984149438616e-10!GO:0050789;regulation of biological process;5.05356758953047e-10!GO:0006261;DNA-dependent DNA replication;7.79380962938053e-10!GO:0031497;chromatin assembly;1.19725558207107e-09!GO:0042981;regulation of apoptosis;1.21499032549834e-09!GO:0048519;negative regulation of biological process;1.22398627325997e-09!GO:0046930;pore complex;1.25085298928487e-09!GO:0043067;regulation of programmed cell death;1.31610647575629e-09!GO:0065002;intracellular protein transport across a membrane;3.46346818425711e-09!GO:0016881;acid-amino acid ligase activity;4.24689088616097e-09!GO:0000775;chromosome, pericentric region;4.24689088616097e-09!GO:0016607;nuclear speck;4.39245109794414e-09!GO:0019222;regulation of metabolic process;4.55593338288588e-09!GO:0008026;ATP-dependent helicase activity;5.67132527913933e-09!GO:0042175;nuclear envelope-endoplasmic reticulum network;5.90354929219034e-09!GO:0006364;rRNA processing;9.36098831323334e-09!GO:0009056;catabolic process;9.91247153692745e-09!GO:0007005;mitochondrion organization and biogenesis;9.96790085817096e-09!GO:0008565;protein transporter activity;1.02002290103888e-08!GO:0017038;protein import;1.02080851473012e-08!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;1.08295770321467e-08!GO:0005789;endoplasmic reticulum membrane;1.22393990147182e-08!GO:0043566;structure-specific DNA binding;1.30435037695177e-08!GO:0043069;negative regulation of programmed cell death;1.30435037695177e-08!GO:0051028;mRNA transport;1.51291916102976e-08!GO:0016192;vesicle-mediated transport;1.60237725963504e-08!GO:0016072;rRNA metabolic process;2.11272291572373e-08!GO:0030532;small nuclear ribonucleoprotein complex;2.84836331531649e-08!GO:0043066;negative regulation of apoptosis;2.87651681863889e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;4.27953551393198e-08!GO:0004812;aminoacyl-tRNA ligase activity;4.27953551393198e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;4.27953551393198e-08!GO:0006916;anti-apoptosis;4.61367561591881e-08!GO:0032446;protein modification by small protein conjugation;4.78315668452485e-08!GO:0005813;centrosome;5.67553257776694e-08!GO:0007051;spindle organization and biogenesis;8.1353877053632e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;8.35338838863034e-08!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;9.00074741187536e-08!GO:0016567;protein ubiquitination;9.92656341959871e-08!GO:0043038;amino acid activation;1.06456787762375e-07!GO:0006418;tRNA aminoacylation for protein translation;1.06456787762375e-07!GO:0043039;tRNA aminoacylation;1.06456787762375e-07!GO:0051246;regulation of protein metabolic process;1.2951386561328e-07!GO:0016779;nucleotidyltransferase activity;1.44774977402664e-07!GO:0005815;microtubule organizing center;1.44774977402664e-07!GO:0016568;chromatin modification;1.5423643774652e-07!GO:0006357;regulation of transcription from RNA polymerase II promoter;1.61612179848349e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.66165818790981e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.8020786002636e-07!GO:0003697;single-stranded DNA binding;1.82958313377489e-07!GO:0051188;cofactor biosynthetic process;1.84014189818833e-07!GO:0009060;aerobic respiration;1.93817742196837e-07!GO:0005667;transcription factor complex;2.84173467399247e-07!GO:0005793;ER-Golgi intermediate compartment;3.20067092927353e-07!GO:0005839;proteasome core complex (sensu Eukaryota);3.71863498487001e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;4.04858016142404e-07!GO:0003924;GTPase activity;4.2968065298842e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;5.12866052264053e-07!GO:0043623;cellular protein complex assembly;5.9008494871872e-07!GO:0051329;interphase of mitotic cell cycle;6.05613587306128e-07!GO:0030120;vesicle coat;7.24369045615192e-07!GO:0030662;coated vesicle membrane;7.24369045615192e-07!GO:0048475;coated membrane;7.93746994862335e-07!GO:0030117;membrane coat;7.93746994862335e-07!GO:0016740;transferase activity;9.33560317734019e-07!GO:0000245;spliceosome assembly;9.53325625098366e-07!GO:0031323;regulation of cellular metabolic process;1.03506039944414e-06!GO:0007010;cytoskeleton organization and biogenesis;1.36843644986471e-06!GO:0045333;cellular respiration;1.48082576484053e-06!GO:0051170;nuclear import;1.53541088109937e-06!GO:0016564;transcription repressor activity;1.56828940309479e-06!GO:0004298;threonine endopeptidase activity;1.56828940309479e-06!GO:0005657;replication fork;1.61649348702746e-06!GO:0009259;ribonucleotide metabolic process;1.61680112087399e-06!GO:0006350;transcription;1.81238406005564e-06!GO:0015986;ATP synthesis coupled proton transport;1.83908555526297e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.83908555526297e-06!GO:0051325;interphase;1.96666521539617e-06!GO:0006163;purine nucleotide metabolic process;2.08352982136196e-06!GO:0016787;hydrolase activity;2.20508518938266e-06!GO:0006888;ER to Golgi vesicle-mediated transport;2.26321343389103e-06!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.32164404368075e-06!GO:0031324;negative regulation of cellular metabolic process;2.42099644549443e-06!GO:0006099;tricarboxylic acid cycle;4.0906695830323e-06!GO:0046356;acetyl-CoA catabolic process;4.0906695830323e-06!GO:0006606;protein import into nucleus;4.37985093723205e-06!GO:0065007;biological regulation;4.48415892854422e-06!GO:0042802;identical protein binding;4.54166101957826e-06!GO:0019829;cation-transporting ATPase activity;4.83402740540381e-06!GO:0000151;ubiquitin ligase complex;5.83145061680004e-06!GO:0009150;purine ribonucleotide metabolic process;5.93528206645613e-06!GO:0016563;transcription activator activity;5.95905947705067e-06!GO:0006084;acetyl-CoA metabolic process;6.97622128010419e-06!GO:0045259;proton-transporting ATP synthase complex;7.03664170161558e-06!GO:0009108;coenzyme biosynthetic process;7.65178297928078e-06!GO:0006164;purine nucleotide biosynthetic process;7.67865455675599e-06!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;7.96927042739493e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;7.96927042739493e-06!GO:0005768;endosome;8.12548150450311e-06!GO:0009260;ribonucleotide biosynthetic process;8.1814623784459e-06!GO:0007017;microtubule-based process;8.34898435395282e-06!GO:0045786;negative regulation of progression through cell cycle;8.46663183350365e-06!GO:0000786;nucleosome;8.58078755337017e-06!GO:0016491;oxidoreductase activity;9.11093853405975e-06!GO:0005762;mitochondrial large ribosomal subunit;1.0166859778583e-05!GO:0000315;organellar large ribosomal subunit;1.0166859778583e-05!GO:0007059;chromosome segregation;1.11892504689172e-05!GO:0015078;hydrogen ion transmembrane transporter activity;1.14848495926038e-05!GO:0009109;coenzyme catabolic process;1.22695768492894e-05!GO:0008094;DNA-dependent ATPase activity;1.26719650752346e-05!GO:0048522;positive regulation of cellular process;1.3130793684042e-05!GO:0005874;microtubule;1.41308512055625e-05!GO:0003713;transcription coactivator activity;1.4532071027203e-05!GO:0009141;nucleoside triphosphate metabolic process;1.62357670849048e-05!GO:0006793;phosphorus metabolic process;1.75485312650839e-05!GO:0006796;phosphate metabolic process;1.75485312650839e-05!GO:0046034;ATP metabolic process;1.80940670027102e-05!GO:0007088;regulation of mitosis;1.99933458382436e-05!GO:0005525;GTP binding;2.1218114278505e-05!GO:0009152;purine ribonucleotide biosynthetic process;2.1218114278505e-05!GO:0009199;ribonucleoside triphosphate metabolic process;2.1218114278505e-05!GO:0003714;transcription corepressor activity;2.38041223627309e-05!GO:0051187;cofactor catabolic process;2.38041223627309e-05!GO:0006754;ATP biosynthetic process;2.42041222314207e-05!GO:0006753;nucleoside phosphate metabolic process;2.42041222314207e-05!GO:0007243;protein kinase cascade;2.52637780142166e-05!GO:0009892;negative regulation of metabolic process;2.57556647775504e-05!GO:0003690;double-stranded DNA binding;2.63786349589323e-05!GO:0000776;kinetochore;2.67476983461497e-05!GO:0010468;regulation of gene expression;2.67476983461497e-05!GO:0019219;regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.67760630301905e-05!GO:0000075;cell cycle checkpoint;2.73112485962428e-05!GO:0009205;purine ribonucleoside triphosphate metabolic process;3.03247731665008e-05!GO:0009144;purine nucleoside triphosphate metabolic process;3.03247731665008e-05!GO:0003682;chromatin binding;3.65508131680659e-05!GO:0051427;hormone receptor binding;3.68968493156091e-05!GO:0009142;nucleoside triphosphate biosynthetic process;3.76455578825376e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;3.76455578825376e-05!GO:0016772;transferase activity, transferring phosphorus-containing groups;3.79385702874784e-05!GO:0003724;RNA helicase activity;3.92213378142375e-05!GO:0000226;microtubule cytoskeleton organization and biogenesis;3.94710995186996e-05!GO:0006613;cotranslational protein targeting to membrane;4.06380765664731e-05!GO:0051168;nuclear export;4.36851148513469e-05!GO:0016469;proton-transporting two-sector ATPase complex;4.80833936600805e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;5.47831012511948e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;5.47831012511948e-05!GO:0051052;regulation of DNA metabolic process;5.66925395839114e-05!GO:0016481;negative regulation of transcription;5.91612229750089e-05!GO:0032774;RNA biosynthetic process;6.52414814343888e-05!GO:0043021;ribonucleoprotein binding;7.18305718348739e-05!GO:0009117;nucleotide metabolic process;7.37210462152817e-05!GO:0006302;double-strand break repair;7.43583579390783e-05!GO:0035257;nuclear hormone receptor binding;7.90257470510286e-05!GO:0015631;tubulin binding;8.34402116363679e-05!GO:0006351;transcription, DNA-dependent;8.37851426118401e-05!GO:0006752;group transfer coenzyme metabolic process;8.49380882506136e-05!GO:0045893;positive regulation of transcription, DNA-dependent;9.39976886389711e-05!GO:0000314;organellar small ribosomal subunit;9.39976886389711e-05!GO:0005763;mitochondrial small ribosomal subunit;9.39976886389711e-05!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;9.71115487209034e-05!GO:0016853;isomerase activity;9.8803726671968e-05!GO:0003899;DNA-directed RNA polymerase activity;0.000114142531936676!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.000144491795657887!GO:0045941;positive regulation of transcription;0.000165393820931623!GO:0016363;nuclear matrix;0.0001685608551459!GO:0016310;phosphorylation;0.000175108344325071!GO:0003702;RNA polymerase II transcription factor activity;0.000178422361211755!GO:0006414;translational elongation;0.000180501616609721!GO:0006091;generation of precursor metabolites and energy;0.000183615749287507!GO:0048471;perinuclear region of cytoplasm;0.00018742816620753!GO:0008033;tRNA processing;0.000203213934904887!GO:0044431;Golgi apparatus part;0.000206334387599971!GO:0005788;endoplasmic reticulum lumen;0.000232271121141705!GO:0003729;mRNA binding;0.000275246003599772!GO:0003684;damaged DNA binding;0.000278955306368266!GO:0007052;mitotic spindle organization and biogenesis;0.000289241323685518!GO:0032561;guanyl ribonucleotide binding;0.000303022325636764!GO:0019001;guanyl nucleotide binding;0.000303022325636764!GO:0005048;signal sequence binding;0.000320032655754575!GO:0006275;regulation of DNA replication;0.000358130079211386!GO:0031252;leading edge;0.000367059755343765!GO:0005798;Golgi-associated vesicle;0.000368087686965342!GO:0007264;small GTPase mediated signal transduction;0.00037672918008358!GO:0005770;late endosome;0.000403986496856101!GO:0044440;endosomal part;0.000404490855077092!GO:0010008;endosome membrane;0.000404490855077092!GO:0051252;regulation of RNA metabolic process;0.000410105733481752!GO:0006612;protein targeting to membrane;0.000435383568448826!GO:0048468;cell development;0.000436971378829655!GO:0000922;spindle pole;0.000450881428098684!GO:0046483;heterocycle metabolic process;0.000485433859097507!GO:0009967;positive regulation of signal transduction;0.00052860955108809!GO:0008654;phospholipid biosynthetic process;0.00054075194433386!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000553196160011505!GO:0006402;mRNA catabolic process;0.00057242403891032!GO:0043681;protein import into mitochondrion;0.000600040354727681!GO:0006950;response to stress;0.000639798445221143!GO:0006839;mitochondrial transport;0.000713695853394327!GO:0008186;RNA-dependent ATPase activity;0.000743398033384063!GO:0045449;regulation of transcription;0.000743398033384063!GO:0050662;coenzyme binding;0.000766107797372418!GO:0045454;cell redox homeostasis;0.00078010991478269!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000802996574814532!GO:0019867;outer membrane;0.000867287696732072!GO:0031988;membrane-bound vesicle;0.000880461822294391!GO:0030036;actin cytoskeleton organization and biogenesis;0.000881333936047025!GO:0005876;spindle microtubule;0.000895052705061713!GO:0008250;oligosaccharyl transferase complex;0.000948362439477725!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.000959801067272974!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.000961412423904057!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000961831975292614!GO:0016023;cytoplasmic membrane-bound vesicle;0.000991381426552137!GO:0031968;organelle outer membrane;0.00104018389756422!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00106384570347078!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00106384570347078!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00106384570347078!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00109094265940626!GO:0032508;DNA duplex unwinding;0.00109094265940626!GO:0032392;DNA geometric change;0.00109094265940626!GO:0004576;oligosaccharyl transferase activity;0.00109164244344927!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00112652834043753!GO:0065009;regulation of a molecular function;0.0011571871626475!GO:0051920;peroxiredoxin activity;0.00125479310368846!GO:0006401;RNA catabolic process;0.00125868097537978!GO:0005637;nuclear inner membrane;0.00126107685874302!GO:0016859;cis-trans isomerase activity;0.00127511104358689!GO:0006626;protein targeting to mitochondrion;0.00127511104358689!GO:0005885;Arp2/3 protein complex;0.0012920890296781!GO:0005769;early endosome;0.00131930160504422!GO:0007093;mitotic cell cycle checkpoint;0.0013630961048519!GO:0003677;DNA binding;0.00138100573688769!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00138542046368574!GO:0000059;protein import into nucleus, docking;0.00139256517791422!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00148487991160217!GO:0030119;AP-type membrane coat adaptor complex;0.00149971687344687!GO:0030867;rough endoplasmic reticulum membrane;0.00164871956044649!GO:0030132;clathrin coat of coated pit;0.00168709274300531!GO:0003746;translation elongation factor activity;0.00175018903073255!GO:0001726;ruffle;0.00179285093967595!GO:0043488;regulation of mRNA stability;0.00186521775065006!GO:0043487;regulation of RNA stability;0.00186521775065006!GO:0009112;nucleobase metabolic process;0.0018659697871985!GO:0004004;ATP-dependent RNA helicase activity;0.00187514135733345!GO:0000082;G1/S transition of mitotic cell cycle;0.00190010508278803!GO:0016741;transferase activity, transferring one-carbon groups;0.00193715835761845!GO:0000139;Golgi membrane;0.0020490765404156!GO:0003678;DNA helicase activity;0.0020681900015119!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00206964247896659!GO:0008361;regulation of cell size;0.00207638626200046!GO:0031982;vesicle;0.00219279216355775!GO:0006891;intra-Golgi vesicle-mediated transport;0.00224079467892527!GO:0030118;clathrin coat;0.00233499633699964!GO:0008139;nuclear localization sequence binding;0.00238561406453848!GO:0005684;U2-dependent spliceosome;0.00243801313069221!GO:0006268;DNA unwinding during replication;0.00247415662584701!GO:0007006;mitochondrial membrane organization and biogenesis;0.00260218463372294!GO:0006289;nucleotide-excision repair;0.00264175311447784!GO:0019843;rRNA binding;0.00271559564106533!GO:0005773;vacuole;0.00273788980595579!GO:0005741;mitochondrial outer membrane;0.00274342035442674!GO:0006284;base-excision repair;0.00277227927613615!GO:0004674;protein serine/threonine kinase activity;0.00279281832776975!GO:0016049;cell growth;0.00279356609575585!GO:0006405;RNA export from nucleus;0.00279988944938499!GO:0006310;DNA recombination;0.00282667630852785!GO:0048518;positive regulation of biological process;0.00293441877596796!GO:0015980;energy derivation by oxidation of organic compounds;0.00307428632048354!GO:0008168;methyltransferase activity;0.00308755979570854!GO:0031410;cytoplasmic vesicle;0.00315425641861512!GO:0030131;clathrin adaptor complex;0.00327974455776693!GO:0000819;sister chromatid segregation;0.00330875128193879!GO:0030031;cell projection biogenesis;0.00336973660277912!GO:0018196;peptidyl-asparagine modification;0.00340842709214666!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00340842709214666!GO:0006355;regulation of transcription, DNA-dependent;0.00357954708054882!GO:0004527;exonuclease activity;0.00357992113234631!GO:0019899;enzyme binding;0.00359204932000575!GO:0044452;nucleolar part;0.00363753220776149!GO:0000070;mitotic sister chromatid segregation;0.0036675863957589!GO:0048500;signal recognition particle;0.00375694761478174!GO:0030663;COPI coated vesicle membrane;0.00391076258417021!GO:0030126;COPI vesicle coat;0.00391076258417021!GO:0033116;ER-Golgi intermediate compartment membrane;0.00393857698050651!GO:0031072;heat shock protein binding;0.00409277681913157!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.00413957409601703!GO:0015002;heme-copper terminal oxidase activity;0.00413957409601703!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.00413957409601703!GO:0004129;cytochrome-c oxidase activity;0.00413957409601703!GO:0008234;cysteine-type peptidase activity;0.00422310103744181!GO:0009116;nucleoside metabolic process;0.0042852290864861!GO:0051789;response to protein stimulus;0.00433839180071887!GO:0006986;response to unfolded protein;0.00433839180071887!GO:0001558;regulation of cell growth;0.00448039690639911!GO:0005905;coated pit;0.00450937955612726!GO:0006611;protein export from nucleus;0.00454192011463361!GO:0000792;heterochromatin;0.00461356727344531!GO:0030658;transport vesicle membrane;0.00464554382111173!GO:0048487;beta-tubulin binding;0.00471518699873238!GO:0008637;apoptotic mitochondrial changes;0.00480637075665079!GO:0008092;cytoskeletal protein binding;0.0048554755546317!GO:0004518;nuclease activity;0.00486103410975328!GO:0006352;transcription initiation;0.00523194246505489!GO:0051540;metal cluster binding;0.00536897006066325!GO:0051536;iron-sulfur cluster binding;0.00536897006066325!GO:0016584;nucleosome positioning;0.00536897006066325!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00538542347340728!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00562462540212652!GO:0006607;NLS-bearing substrate import into nucleus;0.00589915311221659!GO:0006979;response to oxidative stress;0.00598554748706266!GO:0030880;RNA polymerase complex;0.00602375192556884!GO:0000323;lytic vacuole;0.00602375192556884!GO:0005764;lysosome;0.00602375192556884!GO:0006417;regulation of translation;0.00626047086396!GO:0000049;tRNA binding;0.00626081283828991!GO:0006520;amino acid metabolic process;0.00636618848494012!GO:0045892;negative regulation of transcription, DNA-dependent;0.00638586073978705!GO:0006383;transcription from RNA polymerase III promoter;0.00639309251653562!GO:0003711;transcription elongation regulator activity;0.00640916102034817!GO:0030029;actin filament-based process;0.00655004417643779!GO:0008017;microtubule binding;0.00674571579073737!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.00688096491087561!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00697096593877202!GO:0031970;organelle envelope lumen;0.00699285158743896!GO:0051101;regulation of DNA binding;0.00710408638754258!GO:0005758;mitochondrial intermembrane space;0.00716141708677626!GO:0046983;protein dimerization activity;0.00730656879563829!GO:0005791;rough endoplasmic reticulum;0.0074663407589375!GO:0031124;mRNA 3'-end processing;0.00770834195518746!GO:0008312;7S RNA binding;0.0079280351226519!GO:0031529;ruffle organization and biogenesis;0.00799121207902167!GO:0030137;COPI-coated vesicle;0.00801291245343732!GO:0030133;transport vesicle;0.00808034520586314!GO:0042770;DNA damage response, signal transduction;0.0083273461600414!GO:0043596;nuclear replication fork;0.0083273461600414!GO:0035258;steroid hormone receptor binding;0.00847314522613189!GO:0048037;cofactor binding;0.00854576764098782!GO:0016044;membrane organization and biogenesis;0.00864868632130989!GO:0006270;DNA replication initiation;0.00868189990716506!GO:0000096;sulfur amino acid metabolic process;0.00870437901109125!GO:0043624;cellular protein complex disassembly;0.0088744804237355!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.00890208408960025!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.00890208408960025!GO:0043022;ribosome binding;0.0090087044429297!GO:0019752;carboxylic acid metabolic process;0.00935779145162283!GO:0030127;COPII vesicle coat;0.0094965361909915!GO:0012507;ER to Golgi transport vesicle membrane;0.0094965361909915!GO:0000725;recombinational repair;0.0094965361909915!GO:0000724;double-strand break repair via homologous recombination;0.0094965361909915!GO:0016891;endoribonuclease activity, producing 5'-phosphomonoesters;0.00963487438643656!GO:0007346;regulation of progression through mitotic cell cycle;0.00984822453069502!GO:0030660;Golgi-associated vesicle membrane;0.00987843881196204!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0099040141555495!GO:0030134;ER to Golgi transport vesicle;0.00992307747722295!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00992307747722295!GO:0043284;biopolymer biosynthetic process;0.0099320203803147!GO:0051656;establishment of organelle localization;0.0102621771129909!GO:0051287;NAD binding;0.0103143127342291!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0103143127342291!GO:0045047;protein targeting to ER;0.0103143127342291!GO:0005832;chaperonin-containing T-complex;0.0103680987033609!GO:0006082;organic acid metabolic process;0.0104094608938472!GO:0051087;chaperone binding;0.010609179352287!GO:0030176;integral to endoplasmic reticulum membrane;0.0106105877991752!GO:0016272;prefoldin complex;0.0106307197667644!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0106307197667644!GO:0015399;primary active transmembrane transporter activity;0.0106307197667644!GO:0046966;thyroid hormone receptor binding;0.0110527421670487!GO:0008632;apoptotic program;0.0112814949016893!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.0113362974724315!GO:0000428;DNA-directed RNA polymerase complex;0.0113362974724315!GO:0000086;G2/M transition of mitotic cell cycle;0.0113736856011365!GO:0005853;eukaryotic translation elongation factor 1 complex;0.0114052852652527!GO:0005663;DNA replication factor C complex;0.0115823286714169!GO:0016251;general RNA polymerase II transcription factor activity;0.0118040679114306!GO:0019904;protein domain specific binding;0.0122024125306504!GO:0031577;spindle checkpoint;0.0122790363880139!GO:0043065;positive regulation of apoptosis;0.0123089789634454!GO:0051338;regulation of transferase activity;0.0123725989151029!GO:0009893;positive regulation of metabolic process;0.0124753178792716!GO:0000910;cytokinesis;0.0126151452139635!GO:0008601;protein phosphatase type 2A regulator activity;0.0126994806334467!GO:0006118;electron transport;0.013235896918003!GO:0033673;negative regulation of kinase activity;0.0135980847483866!GO:0006469;negative regulation of protein kinase activity;0.0135980847483866!GO:0032984;macromolecular complex disassembly;0.0136409709484221!GO:0030330;DNA damage response, signal transduction by p53 class mediator;0.0138332927667415!GO:0005856;cytoskeleton;0.0146348549393837!GO:0043068;positive regulation of programmed cell death;0.0148348726611299!GO:0006144;purine base metabolic process;0.0148755373761405!GO:0042393;histone binding;0.0150409954366955!GO:0051539;4 iron, 4 sulfur cluster binding;0.0153593850768213!GO:0031625;ubiquitin protein ligase binding;0.0156966505630404!GO:0030032;lamellipodium biogenesis;0.0158303895058316!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.0159271814437409!GO:0006376;mRNA splice site selection;0.0159671836304254!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0159671836304254!GO:0043414;biopolymer methylation;0.0162167531060435!GO:0019783;small conjugating protein-specific protease activity;0.0164287596795335!GO:0008022;protein C-terminus binding;0.0166934392170437!GO:0006338;chromatin remodeling;0.0167802574955898!GO:0008283;cell proliferation;0.0168254794648894!GO:0016408;C-acyltransferase activity;0.017030199708643!GO:0043189;H4/H2A histone acetyltransferase complex;0.0170872562082701!GO:0051348;negative regulation of transferase activity;0.0171221581491429!GO:0000228;nuclear chromosome;0.0172297386345379!GO:0046982;protein heterodimerization activity;0.0172778165865795!GO:0046467;membrane lipid biosynthetic process;0.0177450438461154!GO:0051053;negative regulation of DNA metabolic process;0.0177745916794261!GO:0043130;ubiquitin binding;0.0178238659126737!GO:0032182;small conjugating protein binding;0.0178238659126737!GO:0043601;nuclear replisome;0.0182820809334859!GO:0030894;replisome;0.0182820809334859!GO:0004029;aldehyde dehydrogenase (NAD) activity;0.0185425219683617!GO:0009081;branched chain family amino acid metabolic process;0.0186201472482323!GO:0050790;regulation of catalytic activity;0.0187329131412361!GO:0031123;RNA 3'-end processing;0.0194370591842568!GO:0006595;polyamine metabolic process;0.0195585056634502!GO:0006378;mRNA polyadenylation;0.0197997811508835!GO:0045334;clathrin-coated endocytic vesicle;0.020229078494321!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0202407049014814!GO:0030521;androgen receptor signaling pathway;0.0206648941857096!GO:0016893;endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0208487739319071!GO:0051098;regulation of binding;0.0209841387263925!GO:0032259;methylation;0.0210176225623638!GO:0016197;endosome transport;0.021109180050387!GO:0016126;sterol biosynthetic process;0.0211225857177921!GO:0031326;regulation of cellular biosynthetic process;0.0211773915159845!GO:0005875;microtubule associated complex;0.0219497889530127!GO:0009451;RNA modification;0.0219871974745971!GO:0031406;carboxylic acid binding;0.0221700938588672!GO:0000152;nuclear ubiquitin ligase complex;0.0222380005689321!GO:0009303;rRNA transcription;0.0222428892559946!GO:0004843;ubiquitin-specific protease activity;0.0230099372772733!GO:0043549;regulation of kinase activity;0.0234323962313942!GO:0046474;glycerophospholipid biosynthetic process;0.0238680475947417!GO:0000123;histone acetyltransferase complex;0.0238878332558111!GO:0009165;nucleotide biosynthetic process;0.0240184748024098!GO:0008408;3'-5' exonuclease activity;0.0241407334671625!GO:0043241;protein complex disassembly;0.0243207660673409!GO:0017166;vinculin binding;0.0248300044710886!GO:0000178;exosome (RNase complex);0.0251018488098687!GO:0006354;RNA elongation;0.0256075595431369!GO:0015992;proton transport;0.0257786151074343!GO:0006818;hydrogen transport;0.0260531140296698!GO:0001836;release of cytochrome c from mitochondria;0.0262718363619476!GO:0030125;clathrin vesicle coat;0.0263402286017918!GO:0030665;clathrin coated vesicle membrane;0.0263402286017918!GO:0000209;protein polyubiquitination;0.0263402286017918!GO:0031570;DNA integrity checkpoint;0.0265192663438338!GO:0004300;enoyl-CoA hydratase activity;0.0265874510051252!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.026601548962757!GO:0016616;oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor;0.026601548962757!GO:0007265;Ras protein signal transduction;0.0266195654853052!GO:0045792;negative regulation of cell size;0.027258480036764!GO:0040008;regulation of growth;0.0274127127405134!GO:0005669;transcription factor TFIID complex;0.0282934186445619!GO:0006733;oxidoreduction coenzyme metabolic process;0.02873910861424!GO:0008536;Ran GTPase binding;0.0288339643036668!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0291067681971702!GO:0030308;negative regulation of cell growth;0.0298284696424417!GO:0047115;trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity;0.0298284696424417!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0298284696424417!GO:0006519;amino acid and derivative metabolic process;0.0298599107135153!GO:0005938;cell cortex;0.0299978968017997!GO:0016790;thiolester hydrolase activity;0.0304008393655229!GO:0006672;ceramide metabolic process;0.0305460998537343!GO:0009119;ribonucleoside metabolic process;0.0308162625283528!GO:0035267;NuA4 histone acetyltransferase complex;0.0314841118527559!GO:0030911;TPR domain binding;0.0320576661653934!GO:0032981;mitochondrial respiratory chain complex I assembly;0.0320782721763024!GO:0010257;NADH dehydrogenase complex assembly;0.0320782721763024!GO:0033108;mitochondrial respiratory chain complex assembly;0.0320782721763024!GO:0045045;secretory pathway;0.0321527115239722!GO:0016791;phosphoric monoester hydrolase activity;0.0325646977499469!GO:0008610;lipid biosynthetic process;0.0327925401248653!GO:0000118;histone deacetylase complex;0.032856961381347!GO:0000339;RNA cap binding;0.032947109623077!GO:0004221;ubiquitin thiolesterase activity;0.0332199157077699!GO:0046489;phosphoinositide biosynthetic process;0.0333279515194854!GO:0030128;clathrin coat of endocytic vesicle;0.0334099534632885!GO:0030669;clathrin-coated endocytic vesicle membrane;0.0334099534632885!GO:0030122;AP-2 adaptor complex;0.0334099534632885!GO:0008156;negative regulation of DNA replication;0.034273460724448!GO:0009411;response to UV;0.0344282293251278!GO:0031371;ubiquitin conjugating enzyme complex;0.0349158166654659!GO:0043154;negative regulation of caspase activity;0.0350717309899634!GO:0000184;mRNA catabolic process, nonsense-mediated decay;0.0353008030987846!GO:0032507;maintenance of cellular protein localization;0.0353620422261179!GO:0007007;inner mitochondrial membrane organization and biogenesis;0.0354666196375926!GO:0006650;glycerophospholipid metabolic process;0.0357136501599883!GO:0005092;GDP-dissociation inhibitor activity;0.0359594407776055!GO:0044262;cellular carbohydrate metabolic process;0.0360174646755495!GO:0006740;NADPH regeneration;0.0362881694837641!GO:0006098;pentose-phosphate shunt;0.0362881694837641!GO:0033170;DNA-protein loading ATPase activity;0.0366184214910265!GO:0003689;DNA clamp loader activity;0.0366184214910265!GO:0046519;sphingoid metabolic process;0.0367280328525414!GO:0031325;positive regulation of cellular metabolic process;0.0369300870753688!GO:0008180;signalosome;0.0370537832182521!GO:0007021;tubulin folding;0.0374390136622235!GO:0022890;inorganic cation transmembrane transporter activity;0.0374988039647541!GO:0007050;cell cycle arrest;0.03795814370734!GO:0045859;regulation of protein kinase activity;0.03795814370734!GO:0005083;small GTPase regulator activity;0.0380661981792727!GO:0016311;dephosphorylation;0.0380925387722424!GO:0005784;translocon complex;0.0380925387722424!GO:0007242;intracellular signaling cascade;0.0385320607181735!GO:0000307;cyclin-dependent protein kinase holoenzyme complex;0.0386251837060525!GO:0043492;ATPase activity, coupled to movement of substances;0.0390345561765586!GO:0007094;mitotic cell cycle spindle assembly checkpoint;0.0390345561765586!GO:0046588;negative regulation of calcium-dependent cell-cell adhesion;0.0390345561765586!GO:0046586;regulation of calcium-dependent cell-cell adhesion;0.0390345561765586!GO:0008652;amino acid biosynthetic process;0.0390345561765586!GO:0032200;telomere organization and biogenesis;0.0390345561765586!GO:0000723;telomere maintenance;0.0390345561765586!GO:0008538;proteasome activator activity;0.0393931939641531!GO:0016796;exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters;0.0396482840716443!GO:0006779;porphyrin biosynthetic process;0.0396482840716443!GO:0033014;tetrapyrrole biosynthetic process;0.0396482840716443!GO:0004003;ATP-dependent DNA helicase activity;0.0396718315983042!GO:0046112;nucleobase biosynthetic process;0.0401656987271681!GO:0006400;tRNA modification;0.0404854874311095!GO:0046822;regulation of nucleocytoplasmic transport;0.0406229894159397!GO:0022411;cellular component disassembly;0.041216095664248!GO:0005652;nuclear lamina;0.0418086291942775!GO:0009889;regulation of biosynthetic process;0.0418368017199308!GO:0030518;steroid hormone receptor signaling pathway;0.0418770776217629!GO:0004239;methionyl aminopeptidase activity;0.0419595956110321!GO:0048146;positive regulation of fibroblast proliferation;0.0421602883588834!GO:0008426;protein kinase C inhibitor activity;0.0424124142091091!GO:0031396;regulation of protein ubiquitination;0.0426647918084938!GO:0050178;phenylpyruvate tautomerase activity;0.0431381101064359!GO:0016620;oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor;0.0433122571742229!GO:0006695;cholesterol biosynthetic process;0.0433122571742229!GO:0006778;porphyrin metabolic process;0.0433122571742229!GO:0033013;tetrapyrrole metabolic process;0.0433122571742229!GO:0000793;condensed chromosome;0.0439577263142777!GO:0045944;positive regulation of transcription from RNA polymerase II promoter;0.0445869955906591!GO:0006984;ER-nuclear signaling pathway;0.0453357779634835!GO:0005850;eukaryotic translation initiation factor 2 complex;0.0453562142687649!GO:0006767;water-soluble vitamin metabolic process;0.0458952219640231!GO:0008757;S-adenosylmethionine-dependent methyltransferase activity;0.0461060474298095!GO:0006213;pyrimidine nucleoside metabolic process;0.0463991072100986!GO:0016614;oxidoreductase activity, acting on CH-OH group of donors;0.0469122141639148!GO:0007034;vacuolar transport;0.0470629216934662!GO:0006007;glucose catabolic process;0.0478496824921376!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.048168181972074!GO:0006541;glutamine metabolic process;0.0481929292702256!GO:0051289;protein homotetramerization;0.0482960493538347!GO:0001832;blastocyst growth;0.0483782257529139!GO:0000159;protein phosphatase type 2A complex;0.0483890824801898!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0483890824801898!GO:0003725;double-stranded RNA binding;0.048619353294122!GO:0030100;regulation of endocytosis;0.0486338665285193!GO:0005881;cytoplasmic microtubule;0.0486338665285193!GO:0050000;chromosome localization;0.0490392331775142!GO:0051303;establishment of chromosome localization;0.0490392331775142!GO:0030496;midbody;0.049479992492626 | |||
|sample_id=10717 | |sample_id=10717 | ||
|sample_note= | |sample_note= | ||
| Line 76: | Line 98: | ||
|sample_tissue=breast | |sample_tissue=breast | ||
|top_motifs=POU2F1..3:2.3157263219;VSX1,2:2.18099139764;ZEB1:1.63178903257;SNAI1..3:1.60392101409;POU1F1:1.57071519622;PITX1..3:1.55457296843;SP1:1.5113459458;E2F1..5:1.50679214151;NKX2-3_NKX2-5:1.41719004353;NFY{A,B,C}:1.40970113135;ADNP_IRX_SIX_ZHX:1.11073285013;TBX4,5:1.09723897721;CDC5L:1.08835308753;RBPJ:1.02583062838;FOXQ1:1.01183595704;TP53:0.949209893547;GFI1:0.896607425703;PAX8:0.846994181065;XCPE1{core}:0.845811233442;ZBTB16:0.835950950788;bHLH_family:0.767236235547;TFDP1:0.742952961847;TEAD1:0.686175008588;TEF:0.654314563926;STAT5{A,B}:0.61531656111;ZNF143:0.538993144175;ONECUT1,2:0.532614983636;FOXP1:0.514173627718;POU5F1:0.465718479713;FOX{I1,J2}:0.464386845544;TBP:0.425067334167;NKX2-1,4:0.416865715442;IKZF2:0.408776390504;TOPORS:0.386053617564;NR5A1,2:0.38249867588;OCT4_SOX2{dimer}:0.36499361327;HOX{A6,A7,B6,B7}:0.343415732441;NFIX:0.338317611457;NKX3-2:0.33562345421;FOXD3:0.333460688719;NANOG:0.306811148074;ARID5B:0.294108399338;SOX17:0.254824471035;CDX1,2,4:0.252380896571;MYOD1:0.24619245446;MYB:0.24035477462;HBP1_HMGB_SSRP1_UBTF:0.231832567888;ZNF148:0.229552650091;ZNF384:0.22844543566;PBX1:0.200621741488;AIRE:0.181132547148;HSF1,2:0.179415318037;SOX{8,9,10}:0.164804279797;LMO2:0.16413988076;FOS_FOS{B,L1}_JUN{B,D}:0.148734244801;NKX3-1:0.12868490536;PDX1:0.114868142651;NFE2L2:0.0990673353575;NFE2:0.0923311148452;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0916430921526;FOXL1:0.0828418630958;FOXM1:0.0771900003564;PAX4:0.0533842985885;NRF1:0.030857577063;ATF4:0.025348394737;NR6A1:0.0190784778994;ELK1,4_GABP{A,B1}:0.0147896100016;EP300:0.0104560668577;FOSL2:0.00794731875238;BACH2:-0.00669451330118;MED-1{core}:-0.0265832082174;NFKB1_REL_RELA:-0.033443223296;TLX1..3_NFIC{dimer}:-0.0353455405933;UFEwm:-0.0434230310909;RFX1:-0.070902713484;IRF1,2:-0.0717763411758;IRF7:-0.0831605336315;HIC1:-0.0883001922602;KLF4:-0.0907584856138;ZIC1..3:-0.09561793513;POU6F1:-0.0966039017148;HNF4A_NR2F1,2:-0.112109624305;EGR1..3:-0.155953853824;GFI1B:-0.163546845051;BREu{core}:-0.165129000776;HOX{A5,B5}:-0.166401967364;HOXA9_MEIS1:-0.18860658614;FOXO1,3,4:-0.209240743207;DMAP1_NCOR{1,2}_SMARC:-0.210116036667;STAT1,3:-0.213114812701;NKX6-1,2:-0.222919583079;NFIL3:-0.226448297874;POU3F1..4:-0.230665378495;PAX3,7:-0.237796996337;HIF1A:-0.240285187927;CEBPA,B_DDIT3:-0.241458811901;TFAP2B:-0.246361885001;FOXN1:-0.247010037889;IKZF1:-0.250995084713;HNF1A:-0.278576960125;PRRX1,2:-0.283711704162;ESRRA:-0.285737064706;T:-0.288951370371;JUN:-0.293202240884;HES1:-0.293673884432;FOX{F1,F2,J1}:-0.294925445595;PAX1,9:-0.312774078825;HLF:-0.313216309289;ZFP161:-0.324389613975;TFAP2{A,C}:-0.340472938257;ALX1:-0.354073748165;LEF1_TCF7_TCF7L1,2:-0.357115783981;HOX{A4,D4}:-0.394315203209;MTE{core}:-0.398195122081;GLI1..3:-0.403733594906;HAND1,2:-0.428592077654;MAZ:-0.428857699187;PATZ1:-0.430510064861;CREB1:-0.430928688145;LHX3,4:-0.443308904394;ATF2:-0.443504867438;MYBL2:-0.449200228626;CUX2:-0.452458528306;CRX:-0.463354654283;PAX2:-0.465221972986;ZNF423:-0.46526402743;MEF2{A,B,C,D}:-0.472261603677;DBP:-0.487076817569;EVI1:-0.491229957983;ATF5_CREB3:-0.503144699274;GATA4:-0.518177492302;GATA6:-0.52496458555;RFX2..5_RFXANK_RFXAP:-0.525153272871;PRDM1:-0.534053636301;AHR_ARNT_ARNT2:-0.549783102626;AR:-0.565507312928;PPARG:-0.571617593143;YY1:-0.584606736502;BPTF:-0.589675087303;GCM1,2:-0.592992667425;SOX2:-0.59795917666;PAX6:-0.598871925063;PAX5:-0.599535837322;EN1,2:-0.602488472144;SPIB:-0.607832778554;REST:-0.613361698639;ALX4:-0.623232558382;ETS1,2:-0.623414368013;EBF1:-0.635451040838;GTF2I:-0.653045817818;RUNX1..3:-0.654442364802;ZBTB6:-0.658532075163;NKX2-2,8:-0.663668173901;ATF6:-0.670729633476;ESR1:-0.676317797337;FOX{D1,D2}:-0.679604267898;FOXP3:-0.681083273578;SPI1:-0.682330439741;FOXA2:-0.743262787597;SRF:-0.757657540295;ELF1,2,4:-0.764141895774;MTF1:-0.774856888069;RREB1:-0.781380195076;TFCP2:-0.791720886372;GZF1:-0.811365471419;MYFfamily:-0.831281049069;ZNF238:-0.892405010678;STAT2,4,6:-0.896418211095;SMAD1..7,9:-0.907390397424;NFE2L1:-0.912055648697;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.931897090191;HMGA1,2:-0.938568333191;XBP1:-0.952733498178;GTF2A1,2:-0.96646435258;RXR{A,B,G}:-0.98207379988;TAL1_TCF{3,4,12}:-0.988430618668;NHLH1,2:-1.03462946412;TGIF1:-1.03856622266;SREBF1,2:-1.04204673605;SOX5:-1.08009019996;NR1H4:-1.08646547417;NR3C1:-1.0996458871;NANOG{mouse}:-1.12620362442;HMX1:-1.23485054142;RORA:-1.23824793361;NFATC1..3:-1.2610264232;TLX2:-1.38939012227;SPZ1:-1.45448746321;MZF1:-1.45848529175;MAFB:-1.60273765769;TFAP4:-1.65938533637;RXRA_VDR{dimer}:-1.67077989623 | |top_motifs=POU2F1..3:2.3157263219;VSX1,2:2.18099139764;ZEB1:1.63178903257;SNAI1..3:1.60392101409;POU1F1:1.57071519622;PITX1..3:1.55457296843;SP1:1.5113459458;E2F1..5:1.50679214151;NKX2-3_NKX2-5:1.41719004353;NFY{A,B,C}:1.40970113135;ADNP_IRX_SIX_ZHX:1.11073285013;TBX4,5:1.09723897721;CDC5L:1.08835308753;RBPJ:1.02583062838;FOXQ1:1.01183595704;TP53:0.949209893547;GFI1:0.896607425703;PAX8:0.846994181065;XCPE1{core}:0.845811233442;ZBTB16:0.835950950788;bHLH_family:0.767236235547;TFDP1:0.742952961847;TEAD1:0.686175008588;TEF:0.654314563926;STAT5{A,B}:0.61531656111;ZNF143:0.538993144175;ONECUT1,2:0.532614983636;FOXP1:0.514173627718;POU5F1:0.465718479713;FOX{I1,J2}:0.464386845544;TBP:0.425067334167;NKX2-1,4:0.416865715442;IKZF2:0.408776390504;TOPORS:0.386053617564;NR5A1,2:0.38249867588;OCT4_SOX2{dimer}:0.36499361327;HOX{A6,A7,B6,B7}:0.343415732441;NFIX:0.338317611457;NKX3-2:0.33562345421;FOXD3:0.333460688719;NANOG:0.306811148074;ARID5B:0.294108399338;SOX17:0.254824471035;CDX1,2,4:0.252380896571;MYOD1:0.24619245446;MYB:0.24035477462;HBP1_HMGB_SSRP1_UBTF:0.231832567888;ZNF148:0.229552650091;ZNF384:0.22844543566;PBX1:0.200621741488;AIRE:0.181132547148;HSF1,2:0.179415318037;SOX{8,9,10}:0.164804279797;LMO2:0.16413988076;FOS_FOS{B,L1}_JUN{B,D}:0.148734244801;NKX3-1:0.12868490536;PDX1:0.114868142651;NFE2L2:0.0990673353575;NFE2:0.0923311148452;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.0916430921526;FOXL1:0.0828418630958;FOXM1:0.0771900003564;PAX4:0.0533842985885;NRF1:0.030857577063;ATF4:0.025348394737;NR6A1:0.0190784778994;ELK1,4_GABP{A,B1}:0.0147896100016;EP300:0.0104560668577;FOSL2:0.00794731875238;BACH2:-0.00669451330118;MED-1{core}:-0.0265832082174;NFKB1_REL_RELA:-0.033443223296;TLX1..3_NFIC{dimer}:-0.0353455405933;UFEwm:-0.0434230310909;RFX1:-0.070902713484;IRF1,2:-0.0717763411758;IRF7:-0.0831605336315;HIC1:-0.0883001922602;KLF4:-0.0907584856138;ZIC1..3:-0.09561793513;POU6F1:-0.0966039017148;HNF4A_NR2F1,2:-0.112109624305;EGR1..3:-0.155953853824;GFI1B:-0.163546845051;BREu{core}:-0.165129000776;HOX{A5,B5}:-0.166401967364;HOXA9_MEIS1:-0.18860658614;FOXO1,3,4:-0.209240743207;DMAP1_NCOR{1,2}_SMARC:-0.210116036667;STAT1,3:-0.213114812701;NKX6-1,2:-0.222919583079;NFIL3:-0.226448297874;POU3F1..4:-0.230665378495;PAX3,7:-0.237796996337;HIF1A:-0.240285187927;CEBPA,B_DDIT3:-0.241458811901;TFAP2B:-0.246361885001;FOXN1:-0.247010037889;IKZF1:-0.250995084713;HNF1A:-0.278576960125;PRRX1,2:-0.283711704162;ESRRA:-0.285737064706;T:-0.288951370371;JUN:-0.293202240884;HES1:-0.293673884432;FOX{F1,F2,J1}:-0.294925445595;PAX1,9:-0.312774078825;HLF:-0.313216309289;ZFP161:-0.324389613975;TFAP2{A,C}:-0.340472938257;ALX1:-0.354073748165;LEF1_TCF7_TCF7L1,2:-0.357115783981;HOX{A4,D4}:-0.394315203209;MTE{core}:-0.398195122081;GLI1..3:-0.403733594906;HAND1,2:-0.428592077654;MAZ:-0.428857699187;PATZ1:-0.430510064861;CREB1:-0.430928688145;LHX3,4:-0.443308904394;ATF2:-0.443504867438;MYBL2:-0.449200228626;CUX2:-0.452458528306;CRX:-0.463354654283;PAX2:-0.465221972986;ZNF423:-0.46526402743;MEF2{A,B,C,D}:-0.472261603677;DBP:-0.487076817569;EVI1:-0.491229957983;ATF5_CREB3:-0.503144699274;GATA4:-0.518177492302;GATA6:-0.52496458555;RFX2..5_RFXANK_RFXAP:-0.525153272871;PRDM1:-0.534053636301;AHR_ARNT_ARNT2:-0.549783102626;AR:-0.565507312928;PPARG:-0.571617593143;YY1:-0.584606736502;BPTF:-0.589675087303;GCM1,2:-0.592992667425;SOX2:-0.59795917666;PAX6:-0.598871925063;PAX5:-0.599535837322;EN1,2:-0.602488472144;SPIB:-0.607832778554;REST:-0.613361698639;ALX4:-0.623232558382;ETS1,2:-0.623414368013;EBF1:-0.635451040838;GTF2I:-0.653045817818;RUNX1..3:-0.654442364802;ZBTB6:-0.658532075163;NKX2-2,8:-0.663668173901;ATF6:-0.670729633476;ESR1:-0.676317797337;FOX{D1,D2}:-0.679604267898;FOXP3:-0.681083273578;SPI1:-0.682330439741;FOXA2:-0.743262787597;SRF:-0.757657540295;ELF1,2,4:-0.764141895774;MTF1:-0.774856888069;RREB1:-0.781380195076;TFCP2:-0.791720886372;GZF1:-0.811365471419;MYFfamily:-0.831281049069;ZNF238:-0.892405010678;STAT2,4,6:-0.896418211095;SMAD1..7,9:-0.907390397424;NFE2L1:-0.912055648697;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.931897090191;HMGA1,2:-0.938568333191;XBP1:-0.952733498178;GTF2A1,2:-0.96646435258;RXR{A,B,G}:-0.98207379988;TAL1_TCF{3,4,12}:-0.988430618668;NHLH1,2:-1.03462946412;TGIF1:-1.03856622266;SREBF1,2:-1.04204673605;SOX5:-1.08009019996;NR1H4:-1.08646547417;NR3C1:-1.0996458871;NANOG{mouse}:-1.12620362442;HMX1:-1.23485054142;RORA:-1.23824793361;NFATC1..3:-1.2610264232;TLX2:-1.38939012227;SPZ1:-1.45448746321;MZF1:-1.45848529175;MAFB:-1.60273765769;TFAP4:-1.65938533637;RXRA_VDR{dimer}:-1.67077989623 | ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10717-109I6;search_select_hide=table117:FF:10717-109I6 | |||
}} | }} | ||
Latest revision as of 15:01, 3 June 2020
| Name: | acantholytic squamous carcinoma cell line:HCC1806 |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11844 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Sample information
RNA information
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| CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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| Download raw sequence, BAM & CTSS | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11844
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11844
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.729 |
| 10 | 10 | 0.589 |
| 100 | 100 | 0.276 |
| 101 | 101 | 0.392 |
| 102 | 102 | 0.638 |
| 103 | 103 | 0.338 |
| 104 | 104 | 0.844 |
| 105 | 105 | 0.541 |
| 106 | 106 | 0.813 |
| 107 | 107 | 0.695 |
| 108 | 108 | 0.509 |
| 109 | 109 | 0.341 |
| 11 | 11 | 0.195 |
| 110 | 110 | 0.647 |
| 111 | 111 | 0.734 |
| 112 | 112 | 0.232 |
| 113 | 113 | 0.149 |
| 114 | 114 | 0.0937 |
| 115 | 115 | 0.985 |
| 116 | 116 | 0.528 |
| 117 | 117 | 0.501 |
| 118 | 118 | 0.572 |
| 119 | 119 | 0.677 |
| 12 | 12 | 0.372 |
| 120 | 120 | 0.757 |
| 121 | 121 | 0.969 |
| 122 | 122 | 0.439 |
| 123 | 123 | 0.998 |
| 124 | 124 | 0.0685 |
| 125 | 125 | 0.961 |
| 126 | 126 | 0.423 |
| 127 | 127 | 0.989 |
| 128 | 128 | 0.358 |
| 129 | 129 | 0.719 |
| 13 | 13 | 0.0175 |
| 130 | 130 | 0.157 |
| 131 | 131 | 0.0485 |
| 132 | 132 | 0.426 |
| 133 | 133 | 0.00139 |
| 134 | 134 | 0.00794 |
| 135 | 135 | 0.03 |
| 136 | 136 | 0.0203 |
| 137 | 137 | 0.167 |
| 138 | 138 | 0.594 |
| 139 | 139 | 0.00416 |
| 14 | 14 | 0.475 |
| 140 | 140 | 0.0823 |
| 141 | 141 | 0.026 |
| 142 | 142 | 0.826 |
| 143 | 143 | 0.0405 |
| 144 | 144 | 0.206 |
| 145 | 145 | 0.64 |
| 146 | 146 | 0.932 |
| 147 | 147 | 0.992 |
| 148 | 148 | 0.0426 |
| 149 | 149 | 0.0505 |
| 15 | 15 | 0.431 |
| 150 | 150 | 0.389 |
| 151 | 151 | 0.464 |
| 152 | 152 | 0.498 |
| 153 | 153 | 0.643 |
| 154 | 154 | 0.818 |
| 155 | 155 | 0.451 |
| 156 | 156 | 0.867 |
| 157 | 157 | 0.506 |
| 158 | 158 | 0.297 |
| 159 | 159 | 0.269 |
| 16 | 16 | 0.995 |
| 160 | 160 | 0.21 |
| 161 | 161 | 0.673 |
| 162 | 162 | 0.309 |
| 163 | 163 | 0.597 |
| 164 | 164 | 0.676 |
| 165 | 165 | 0.541 |
| 166 | 166 | 0.434 |
| 167 | 167 | 0.402 |
| 168 | 168 | 0.81 |
| 169 | 169 | 0.747 |
| 17 | 17 | 0.471 |
| 18 | 18 | 0.204 |
| 19 | 19 | 0.0377 |
| 2 | 2 | 0.52 |
| 20 | 20 | 0.0929 |
| 21 | 21 | 0.867 |
| 22 | 22 | 0.372 |
| 23 | 23 | 0.0254 |
| 24 | 24 | 0.505 |
| 25 | 25 | 0.642 |
| 26 | 26 | 0.874 |
| 27 | 27 | 0.688 |
| 28 | 28 | 0.754 |
| 29 | 29 | 0.354 |
| 3 | 3 | 0.95 |
| 30 | 30 | 0.816 |
| 31 | 31 | 0.439 |
| 32 | 32 | 0.0144 |
| 33 | 33 | 0.121 |
| 34 | 34 | 0.143 |
| 35 | 35 | 0.00605 |
| 36 | 36 | 0.226 |
| 37 | 37 | 0.476 |
| 38 | 38 | 0.854 |
| 39 | 39 | 0.57 |
| 4 | 4 | 0.745 |
| 40 | 40 | 0.0402 |
| 41 | 41 | 0.181 |
| 42 | 42 | 0.825 |
| 43 | 43 | 0.149 |
| 44 | 44 | 0.864 |
| 45 | 45 | 0.872 |
| 46 | 46 | 0.162 |
| 47 | 47 | 0.498 |
| 48 | 48 | 0.938 |
| 49 | 49 | 0.141 |
| 5 | 5 | 0.164 |
| 50 | 50 | 0.25 |
| 51 | 51 | 0.756 |
| 52 | 52 | 0.857 |
| 53 | 53 | 0.593 |
| 54 | 54 | 0.439 |
| 55 | 55 | 0.341 |
| 56 | 56 | 0.994 |
| 57 | 57 | 0.623 |
| 58 | 58 | 0.252 |
| 59 | 59 | 0.114 |
| 6 | 6 | 0.942 |
| 60 | 60 | 0.423 |
| 61 | 61 | 0.869 |
| 62 | 62 | 0.0355 |
| 63 | 63 | 0.766 |
| 64 | 64 | 0.973 |
| 65 | 65 | 0.227 |
| 66 | 66 | 5.02115e-4 |
| 67 | 67 | 0.917 |
| 68 | 68 | 0.0913 |
| 69 | 69 | 0.938 |
| 7 | 7 | 0.87 |
| 70 | 70 | 0.0407 |
| 71 | 71 | 0.691 |
| 72 | 72 | 0.339 |
| 73 | 73 | 0.701 |
| 74 | 74 | 0.0659 |
| 75 | 75 | 0.349 |
| 76 | 76 | 0.866 |
| 77 | 77 | 0.491 |
| 78 | 78 | 0.271 |
| 79 | 79 | 0.266 |
| 8 | 8 | 0.798 |
| 80 | 80 | 0.0535 |
| 81 | 81 | 0.208 |
| 82 | 82 | 0.00698 |
| 83 | 83 | 0.332 |
| 84 | 84 | 0.634 |
| 85 | 85 | 0.00615 |
| 86 | 86 | 0.0949 |
| 87 | 87 | 0.0302 |
| 88 | 88 | 0.954 |
| 89 | 89 | 0.118 |
| 9 | 9 | 0.0213 |
| 90 | 90 | 0.309 |
| 91 | 91 | 0.0208 |
| 92 | 92 | 0.0419 |
| 93 | 93 | 0.572 |
| 94 | 94 | 0.129 |
| 95 | 95 | 0.148 |
| 96 | 96 | 0.0399 |
| 97 | 97 | 0.785 |
| 98 | 98 | 0.319 |
| 99 | 99 | 0.944 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11844
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102024 squamous cell carcinoma cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0000076 (squamous epithelial cell)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)
1749 (squamous cell carcinoma)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0102024 (squamous cell carcinoma cell line sample)
0101120 (epithelial cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA
